Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538460 | RYR33127.1 | 71.350 | 363 | 70 | 4 | 159 | 487 | 45 | 407 | 3.48e-168 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538460 | sp|P10978|POLX_TOBAC | 35.833 | 360 | 189 | 5 | 163 | 485 | 42 | 396 | 1.45e-55 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538460 | A0A445B365 | 71.350 | 363 | 70 | 4 | 159 | 487 | 45 | 407 | 1.66e-168 | 520 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0216900 | Msa0538460 | 0.819327 | 1.231112e-52 | -8.615850e-47 |
| Msa0370690 | Msa0538460 | 0.825417 | 4.741285e-54 | -8.615850e-47 |
| Msa0538460 | Msa0538510 | 0.970434 | 1.302696e-131 | -8.615850e-47 |
| Msa0538460 | Msa0938190 | 0.830527 | 2.793516e-55 | -8.615850e-47 |
| Msa0538460 | Msa1032760 | 0.803364 | 3.611121e-49 | -8.615850e-47 |
| Msa0538460 | Msa1239000 | 0.804629 | 1.971266e-49 | -8.615850e-47 |
| Msa0538460 | Msa1247540 | 0.809047 | 2.295112e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538460 | MtrunA17_Chr4g0013161 | 89.308 | 159 | 17 | 0 | 1 | 159 | 1 | 159 | 5.78e-82 | 252 |
| Msa0538460 | MtrunA17_Chr7g0244491 | 56.707 | 164 | 63 | 4 | 1 | 159 | 1 | 161 | 2.86e-37 | 135 |
| Msa0538460 | MtrunA17_Chr8g0351181 | 28.926 | 363 | 211 | 6 | 162 | 485 | 40 | 394 | 3.03e-35 | 136 |
| Msa0538460 | MtrunA17_Chr8g0391561 | 21.867 | 407 | 274 | 6 | 120 | 484 | 30 | 434 | 7.35e-25 | 107 |
| Msa0538460 | MtrunA17_Chr5g0438101 | 51.546 | 97 | 40 | 2 | 11 | 101 | 15 | 110 | 1.17e-21 | 92.4 |
| Msa0538460 | MtrunA17_Chr8g0342611 | 39.850 | 133 | 77 | 2 | 175 | 305 | 53 | 184 | 1.26e-20 | 90.5 |
| Msa0538460 | MtrunA17_Chr4g0029381 | 29.944 | 177 | 91 | 4 | 205 | 371 | 1 | 154 | 6.21e-17 | 79.3 |
| Msa0538460 | MtrunA17_Chr3g0087561 | 33.582 | 134 | 66 | 3 | 357 | 468 | 37 | 169 | 5.19e-14 | 70.5 |
| Msa0538460 | MtrunA17_Chr3g0114561 | 46.809 | 94 | 43 | 1 | 11 | 97 | 19 | 112 | 2.58e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 97 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAATAATACCCTCTTATT+TGG | 0.126508 | 4_1:+17784433 | None:intergenic |
| TGCAAAATTGTTATGGAAAA+TGG | 0.165276 | 4_1:-17784044 | Msa0538460:CDS |
| CATCTTGCATGCATACAATT+TGG | 0.180856 | 4_1:+17784867 | None:intergenic |
| CTGTTGCAGTTCCATTTGTT+TGG | 0.199775 | 4_1:-17788915 | Msa0538460:CDS |
| TGAGAGAGATGTTGCGTTCT+TGG | 0.210667 | 4_1:-17784980 | Msa0538460:CDS |
| GTAGTAAACCACTTCCTATT+TGG | 0.227850 | 4_1:+17784248 | None:intergenic |
| AAAATCTTCCAAGTATCTTT+TGG | 0.274979 | 4_1:-17788776 | Msa0538460:CDS |
| GGTCGTCCCCGAGATAATTT+TGG | 0.290058 | 4_1:+17788642 | None:intergenic |
| GTCTTTAGAGAATGTATGTT+TGG | 0.305846 | 4_1:+17788873 | None:intergenic |
| TGTTGCAGTTCCATTTGTTT+GGG | 0.310743 | 4_1:-17788914 | Msa0538460:CDS |
| ACTACCTACCAAAGTATAAA+TGG | 0.319288 | 4_1:-17784230 | Msa0538460:CDS |
| AAAGGGATGACTAATGAAAA+AGG | 0.321666 | 4_1:-17784553 | Msa0538460:CDS |
| CTTGGTATACTAGAGGAAAA+TGG | 0.327765 | 4_1:-17784068 | Msa0538460:CDS |
| TGGAGGAAGGCAACTCAATC+TGG | 0.332793 | 4_1:-17784846 | Msa0538460:CDS |
| AAATGGTTGCAAAATTGTTA+TGG | 0.336791 | 4_1:-17784051 | Msa0538460:CDS |
| TCTCTCAAGGCATAAGATTA+TGG | 0.338340 | 4_1:+17784996 | None:intergenic |
| AATGTATGTTTGGGAGTTCC+AGG | 0.349044 | 4_1:+17788883 | None:intergenic |
| TGGTAAGTGGATGCTTGATT+CGG | 0.351031 | 4_1:-17784291 | Msa0538460:CDS |
| ACTTCCTATTTGGGCACATA+TGG | 0.356788 | 4_1:+17784258 | None:intergenic |
| TAGTAAACCACTTCCTATTT+GGG | 0.362719 | 4_1:+17784249 | None:intergenic |
| ATTACGTCAACAAGTTTGAT+AGG | 0.373033 | 4_1:-17784822 | Msa0538460:CDS |
| CAAGGATTCTTTGATACTAA+AGG | 0.379240 | 4_1:-17784571 | Msa0538460:CDS |
| AAGCACATTGTCCAAATAAG+AGG | 0.383114 | 4_1:-17784444 | Msa0538460:CDS |
| TCCTCATCCTTCTTACTCAT+AGG | 0.393031 | 4_1:+17785051 | None:intergenic |
| GGTAAGTGGATGCTTGATTC+GGG | 0.396161 | 4_1:-17784290 | Msa0538460:CDS |
| GAGTAAGAAGGATGAGGATT+GGG | 0.404144 | 4_1:-17785046 | Msa0538460:CDS |
| AAGGATTCTTTGATACTAAA+GGG | 0.406954 | 4_1:-17784570 | Msa0538460:CDS |
| TGAGACATGTTCCAAATTTG+CGG | 0.418291 | 4_1:-17784106 | Msa0538460:CDS |
| TCTAAAAGATGGGTGACAAT+TGG | 0.418920 | 4_1:+17788942 | None:intergenic |
| CACACCATATGTGCCCAAAT+AGG | 0.423092 | 4_1:-17784262 | Msa0538460:CDS |
| GATAAGAAGGTGGAGGTGTA+AGG | 0.431589 | 4_1:+17788839 | None:intergenic |
| GATTCTTCCAAAATTATCTC+GGG | 0.433513 | 4_1:-17788649 | Msa0538460:CDS |
| TCTTTAGAGAATGTATGTTT+GGG | 0.435030 | 4_1:+17788874 | None:intergenic |
| TAGGATTATATCAGAGTTGA+AGG | 0.435315 | 4_1:-17784803 | Msa0538460:CDS |
| TGGTTCGTTGGTTGTGATGA+AGG | 0.436916 | 4_1:-17784003 | Msa0538460:CDS |
| AATGAAGAAGTAACGGCGGC+TGG | 0.438520 | 4_1:-17784955 | Msa0538460:CDS |
| AAACAATGCCAAAAGATACT+TGG | 0.453513 | 4_1:+17788768 | None:intergenic |
| GCAACAGAAACTCTAAAAGA+TGG | 0.459895 | 4_1:+17788931 | None:intergenic |
| TGAGTAAGAAGGATGAGGAT+TGG | 0.476341 | 4_1:-17785047 | Msa0538460:CDS |
| ATAAGAAGGTGGAGGTGTAA+GGG | 0.477682 | 4_1:+17788840 | None:intergenic |
| AGATTCTTCCAAAATTATCT+CGG | 0.480227 | 4_1:-17788650 | Msa0538460:CDS |
| GGTTGAGATTCCCAAACAAA+TGG | 0.489006 | 4_1:+17788904 | None:intergenic |
| AGAAGAAAATTCTTAAGCTA+TGG | 0.489299 | 4_1:-17788610 | Msa0538460:CDS |
| CAACCATGCCGGTAAAATTG+AGG | 0.490792 | 4_1:-17784186 | Msa0538460:CDS |
| ATCTAAATCTACACCTCTTG+TGG | 0.491204 | 4_1:-17784506 | Msa0538460:CDS |
| TTTCAGCAGATTACTTTCAA+AGG | 0.492999 | 4_1:-17788971 | Msa0538460:CDS |
| CAGTTCCACCATTTATACTT+TGG | 0.497631 | 4_1:+17784222 | None:intergenic |
| TAAGAAGGTGGAGGTGTAAG+GGG | 0.511212 | 4_1:+17788841 | None:intergenic |
| AACCATGCCGGTAAAATTGA+GGG | 0.516202 | 4_1:-17784185 | Msa0538460:CDS |
| GGAACATGTCTCACATTCAT+CGG | 0.519762 | 4_1:+17784116 | None:intergenic |
| AAGTAACGGCGGCTGGGGTG+TGG | 0.521105 | 4_1:-17784948 | Msa0538460:CDS |
| GTTCAAACATTGATGCTTGT+GGG | 0.522418 | 4_1:-17784703 | Msa0538460:CDS |
| TGAAGAAGTAACGGCGGCTG+GGG | 0.523031 | 4_1:-17784953 | Msa0538460:CDS |
| GCCGGTAAAATTGAGGGGTA+TGG | 0.524234 | 4_1:-17784179 | Msa0538460:CDS |
| AAAGCAATAACATGAGTGCT+TGG | 0.529489 | 4_1:+17784752 | None:intergenic |
| ATGAAGAAGTAACGGCGGCT+GGG | 0.529623 | 4_1:-17784954 | Msa0538460:CDS |
| TGCGAATCGCTGCTACAAGT+TGG | 0.533116 | 4_1:-17784630 | Msa0538460:CDS |
| TTCAGGGGTGAAAATGAAGA+TGG | 0.539909 | 4_1:-17788574 | Msa0538460:intron |
| CAAATTGTATGCATGCAAGA+TGG | 0.544720 | 4_1:-17784866 | Msa0538460:CDS |
| CAACAGAAACTCTAAAAGAT+GGG | 0.546913 | 4_1:+17788932 | None:intergenic |
| ATAAGAATCAAGATGCATGA+TGG | 0.548029 | 4_1:-17784152 | Msa0538460:CDS |
| GGAGGAAGGCAACTCAATCT+GGG | 0.554824 | 4_1:-17784845 | Msa0538460:CDS |
| GGTTCGTTGGTTGTGATGAA+GGG | 0.559036 | 4_1:-17784002 | Msa0538460:CDS |
| TTTGTTTGGGAATCTCAACC+TGG | 0.562667 | 4_1:-17788901 | Msa0538460:CDS |
| AAACATGGTCTTTCCACAAG+AGG | 0.570271 | 4_1:+17784493 | None:intergenic |
| AGTTCAAACATTGATGCTTG+TGG | 0.570311 | 4_1:-17784704 | Msa0538460:CDS |
| ACCTATGAGTAAGAAGGATG+AGG | 0.571466 | 4_1:-17785052 | Msa0538460:CDS |
| AATCAAGATGCATGATGGAA+TGG | 0.572247 | 4_1:-17784147 | Msa0538460:CDS |
| TATTTCTCTTGGTATACTAG+AGG | 0.580152 | 4_1:-17784075 | Msa0538460:CDS |
| ATATGTGCCCAAATAGGAAG+TGG | 0.585023 | 4_1:-17784256 | Msa0538460:CDS |
| TCCACCATTTATACTTTGGT+AGG | 0.586796 | 4_1:+17784226 | None:intergenic |
| GCATTGTTGAAATGATAAGA+AGG | 0.591984 | 4_1:+17788826 | None:intergenic |
| GAAGGTGGAGGTGTAAGGGG+AGG | 0.592725 | 4_1:+17788844 | None:intergenic |
| TAGCAGTGGAAGAGAATACA+AGG | 0.594414 | 4_1:-17784602 | Msa0538460:CDS |
| AGCACATTGTCCAAATAAGA+GGG | 0.596846 | 4_1:-17784443 | Msa0538460:intron |
| CTTGGTAAATGAAGAAGTAA+CGG | 0.606247 | 4_1:-17784962 | Msa0538460:CDS |
| AATTATCTCGGGGACGACCA+AGG | 0.607137 | 4_1:-17788638 | Msa0538460:CDS |
| AGAACGCAACATCTCTCTCA+AGG | 0.609793 | 4_1:+17784983 | None:intergenic |
| GAATACAAGGAACAAGCTCA+AGG | 0.613583 | 4_1:-17784589 | Msa0538460:CDS |
| CGATGACAAAGAAGATGATG+AGG | 0.616051 | 4_1:+17788702 | None:intergenic |
| ATTTGGGCACATATGGTGTG+AGG | 0.623984 | 4_1:+17784265 | None:intergenic |
| AGCTGACCACATTTAAAACA+TGG | 0.625475 | 4_1:+17784478 | None:intergenic |
| TATGCATGCAAGATGGAGGA+AGG | 0.626039 | 4_1:-17784859 | Msa0538460:CDS |
| TTGATGGCAATGAAAACGAA+GGG | 0.630243 | 4_1:+17788674 | None:intergenic |
| ACCTACCAAAGTATAAATGG+TGG | 0.632471 | 4_1:-17784227 | Msa0538460:CDS |
| ATTGATGGCAATGAAAACGA+AGG | 0.635141 | 4_1:+17788673 | None:intergenic |
| ATTGTATGCATGCAAGATGG+AGG | 0.640162 | 4_1:-17784863 | Msa0538460:CDS |
| TTAATGGGTAACAACCATGC+CGG | 0.642716 | 4_1:-17784197 | Msa0538460:CDS |
| CTCAAGGCATAAGATTATGG+CGG | 0.643964 | 4_1:+17784999 | None:intergenic |
| TTGTTGAAATGATAAGAAGG+TGG | 0.647192 | 4_1:+17788829 | None:intergenic |
| TTGAAATGATAAGAAGGTGG+AGG | 0.647831 | 4_1:+17788832 | None:intergenic |
| ATTCTTCCAAAATTATCTCG+GGG | 0.650660 | 4_1:-17788648 | Msa0538460:CDS |
| ACAAGTTGGATGTCTAGCAG+TGG | 0.651606 | 4_1:-17784616 | Msa0538460:CDS |
| ACCATGCCGGTAAAATTGAG+GGG | 0.661769 | 4_1:-17784184 | Msa0538460:CDS |
| AGGGATAAAGACTTCAGTGA+CGG | 0.665340 | 4_1:+17783976 | None:intergenic |
| GACTAGAACATCACTCGTAG+CGG | 0.682837 | 4_1:-17784659 | Msa0538460:CDS |
| GGTAAATGAAGAAGTAACGG+CGG | 0.723831 | 4_1:-17784959 | Msa0538460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTTTTTTTTTAAT+TGG | + | chr4_1:17787007-17787026 | None:intergenic | 0.0% |
| !! | AAACAAAAAAATAAAGTTTA+TGG | + | chr4_1:17784944-17784963 | None:intergenic | 10.0% |
| !!! | AATATTTGTTTTTTCATAAA+TGG | - | chr4_1:17786420-17786439 | Msa0538460:intron | 10.0% |
| !! | CACTAAATTAAAAAAATTTA+TGG | + | chr4_1:17786527-17786546 | None:intergenic | 10.0% |
| !!! | TATTTAATTTATACCTATAG+AGG | + | chr4_1:17785147-17785166 | None:intergenic | 15.0% |
| !! | TCTATAGGTATAAATTAAAT+AGG | - | chr4_1:17785146-17785165 | Msa0538460:intron | 15.0% |
| !! | ATCATAAATTTCATATACAA+AGG | - | chr4_1:17786737-17786756 | Msa0538460:intron | 15.0% |
| !!! | TTTTTTCTCATTCTTTTTGT+TGG | + | chr4_1:17784215-17784234 | None:intergenic | 20.0% |
| !!! | TTTTCTCAGTTAAACTTTAT+AGG | - | chr4_1:17784822-17784841 | Msa0538460:CDS | 20.0% |
| !! | CTATTAAGAAACTTGAATTA+TGG | + | chr4_1:17784867-17784886 | None:intergenic | 20.0% |
| !! | GAGATTACTTATAAAAGTAA+TGG | - | chr4_1:17785076-17785095 | Msa0538460:intron | 20.0% |
| !!! | TACAAGAAAATCTAAAATTG+AGG | + | chr4_1:17785531-17785550 | None:intergenic | 20.0% |
| !! | GTGGTTGTATTTAATTAATT+TGG | + | chr4_1:17785564-17785583 | None:intergenic | 20.0% |
| !! | TCATTAGTTAATATGTAATG+CGG | - | chr4_1:17785786-17785805 | Msa0538460:intron | 20.0% |
| !!! | AATTTAATTGGTATTAGCTT+GGG | + | chr4_1:17786029-17786048 | None:intergenic | 20.0% |
| !! | TTTGGAAAATGAAATATATC+AGG | + | chr4_1:17786074-17786093 | None:intergenic | 20.0% |
| !! | TAGGAAAAATATTATCGAAT+AGG | - | chr4_1:17786139-17786158 | Msa0538460:intron | 20.0% |
| !!! | TATGTTGAAATAGATTTGTT+CGG | + | chr4_1:17786558-17786577 | None:intergenic | 20.0% |
| !! | AACAAATCTATTTCAACATA+GGG | - | chr4_1:17786558-17786577 | Msa0538460:intron | 20.0% |
| !! | TGAAATTTATGATTGCAATA+TGG | + | chr4_1:17786730-17786749 | None:intergenic | 20.0% |
| !! | AAATTTCATATACAAAGGAA+AGG | - | chr4_1:17786742-17786761 | Msa0538460:intron | 20.0% |
| !! | CATAATATTTCCAATAAAGT+AGG | - | chr4_1:17786805-17786824 | Msa0538460:intron | 20.0% |
| !! | ACAATGCATAATAATATGTA+AGG | - | chr4_1:17787162-17787181 | Msa0538460:intron | 20.0% |
| !!! | TTGACACGTTATTTTTTTTT+TGG | + | chr4_1:17787213-17787232 | None:intergenic | 20.0% |
| !!! | ATATTTGGTAATGCTAAATA+TGG | - | chr4_1:17787277-17787296 | Msa0538460:intron | 20.0% |
| !!! | ATATTTGGTAATGCTAAATA+TGG | - | chr4_1:17787277-17787296 | Msa0538460:intron | 20.0% |
| !!! | CAACTCTAAAATTTTAGAAT+TGG | + | chr4_1:17787766-17787785 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTTTCCAATACAA+TGG | - | chr4_1:17787796-17787815 | Msa0538460:intron | 20.0% |
| !! | TATGAAATCGAAAAATTCAA+TGG | - | chr4_1:17787851-17787870 | Msa0538460:intron | 20.0% |
| !!! | GAAAAAATGATTTTTCCTAT+TGG | - | chr4_1:17787873-17787892 | Msa0538460:intron | 20.0% |
| !! | TTAAATAATACCCTCTTATT+TGG | + | chr4_1:17788586-17788605 | None:intergenic | 20.0% |
| !! | TCTTTAGAGAATGTATGTTT+GGG | + | chr4_1:17784145-17784164 | None:intergenic | 25.0% |
| !! | AAAATCTTCCAAGTATCTTT+TGG | - | chr4_1:17784240-17784259 | Msa0538460:CDS | 25.0% |
| ! | TGTTTCAAAAACTAAACTTC+AGG | - | chr4_1:17784266-17784285 | Msa0538460:CDS | 25.0% |
| !!! | ATTTTGGAAGAATCTATTGA+TGG | + | chr4_1:17784361-17784380 | None:intergenic | 25.0% |
| ! | AGATTCTTCCAAAATTATCT+CGG | - | chr4_1:17784366-17784385 | Msa0538460:intron | 25.0% |
| ! | AGAAGAAAATTCTTAAGCTA+TGG | - | chr4_1:17784406-17784425 | Msa0538460:intron | 25.0% |
| !!! | TTCTGGTTTGGATAAAATTA+AGG | - | chr4_1:17784786-17784805 | Msa0538460:CDS | 25.0% |
| !!! | AATAAAGTTTATGGCTTGTT+TGG | + | chr4_1:17784935-17784954 | None:intergenic | 25.0% |
| ! | AGGTATAAATTAAATAGGCT+AGG | - | chr4_1:17785151-17785170 | Msa0538460:intron | 25.0% |
| ! | CATAATAGCAAACAATAACA+AGG | - | chr4_1:17785193-17785212 | Msa0538460:intron | 25.0% |
| !! | TCAATGTGCACAATATTTTA+TGG | - | chr4_1:17785429-17785448 | Msa0538460:intron | 25.0% |
| ! | CGATGCAATAAATATATTAC+AGG | + | chr4_1:17785483-17785502 | None:intergenic | 25.0% |
| ! | TATTCTACTCAACATTATCA+TGG | + | chr4_1:17785846-17785865 | None:intergenic | 25.0% |
| ! | GTACTAAGTCAAACTAAAAA+TGG | - | chr4_1:17785869-17785888 | Msa0538460:intron | 25.0% |
| ! | GGTAAATATATCTTGTAAGT+TGG | - | chr4_1:17785890-17785909 | Msa0538460:intron | 25.0% |
| ! | CAATTTAATTGGTATTAGCT+TGG | + | chr4_1:17786030-17786049 | None:intergenic | 25.0% |
| ! | CAAGCTAATACCAATTAAAT+TGG | - | chr4_1:17786028-17786047 | Msa0538460:intron | 25.0% |
| ! | CAATGTTGAACCAATTTAAT+TGG | + | chr4_1:17786041-17786060 | None:intergenic | 25.0% |
| ! | AGGACAATTAATGAGTTATT+TGG | + | chr4_1:17786092-17786111 | None:intergenic | 25.0% |
| !! | GTTTTTCGCTGAAAAATTTA+TGG | + | chr4_1:17786323-17786342 | None:intergenic | 25.0% |
| !!! | TAAATTTTTCAGCGAAAAAC+AGG | - | chr4_1:17786323-17786342 | Msa0538460:intron | 25.0% |
| !!! | TTTTTTTAATTTAGTGCGCT+AGG | - | chr4_1:17786531-17786550 | Msa0538460:intron | 25.0% |
| !!! | TTTTTTAATTTAGTGCGCTA+GGG | - | chr4_1:17786532-17786551 | Msa0538460:intron | 25.0% |
| ! | GAACAAATCTATTTCAACAT+AGG | - | chr4_1:17786557-17786576 | Msa0538460:intron | 25.0% |
| ! | ACAAATCTATTTCAACATAG+GGG | - | chr4_1:17786559-17786578 | Msa0538460:intron | 25.0% |
| ! | CACTAAGTGTTCAATAAAAA+TGG | - | chr4_1:17786769-17786788 | Msa0538460:intron | 25.0% |
| ! | AAGAATAAGTCCTACTTTAT+TGG | + | chr4_1:17786818-17786837 | None:intergenic | 25.0% |
| !!! | TCCAGGTTTTTAATTTTATC+AGG | - | chr4_1:17786870-17786889 | Msa0538460:intron | 25.0% |
| !!! | CCAGGTTTTTAATTTTATCA+GGG | - | chr4_1:17786871-17786890 | Msa0538460:intron | 25.0% |
| !!! | CAGGTTTTTAATTTTATCAG+GGG | - | chr4_1:17786872-17786891 | Msa0538460:intron | 25.0% |
| ! | CATAATAATATGTAAGGTCT+GGG | - | chr4_1:17787168-17787187 | Msa0538460:intron | 25.0% |
| ! | ATAATAATATGTAAGGTCTG+GGG | - | chr4_1:17787169-17787188 | Msa0538460:intron | 25.0% |
| !!! | ATTTTTTTTTTGGTGATGGT+CGG | + | chr4_1:17787203-17787222 | None:intergenic | 25.0% |
| !!! | CGTTATTTTTTTTTTGGTGA+TGG | + | chr4_1:17787207-17787226 | None:intergenic | 25.0% |
| ! | AAATAACGTGTCAAAAATAC+CGG | - | chr4_1:17787219-17787238 | Msa0538460:intron | 25.0% |
| ! | CATACAAGCAAAATAATTTG+TGG | + | chr4_1:17787516-17787535 | None:intergenic | 25.0% |
| !! | AAAATGATTTTTCCTATTGG+TGG | - | chr4_1:17787876-17787895 | Msa0538460:intron | 25.0% |
| ! | TATTTCATAAAAGTTGCACA+AGG | - | chr4_1:17787919-17787938 | Msa0538460:intron | 25.0% |
| ! | AAGGATTCTTTGATACTAAA+GGG | - | chr4_1:17788446-17788465 | Msa0538460:intron | 25.0% |
| !! | ATAAGATTTTTCCGCAAATT+TGG | + | chr4_1:17788924-17788943 | None:intergenic | 25.0% |
| ! | AAATGGTTGCAAAATTGTTA+TGG | - | chr4_1:17788965-17788984 | Msa0538460:CDS | 25.0% |
| ! | TGCAAAATTGTTATGGAAAA+TGG | - | chr4_1:17788972-17788991 | Msa0538460:CDS | 25.0% |
| !!! | GGAGTTTTAAAAATTGTATG+TGG | - | chr4_1:17788993-17789012 | Msa0538460:CDS | 25.0% |
| TTTCAGCAGATTACTTTCAA+AGG | - | chr4_1:17784045-17784064 | Msa0538460:CDS | 30.0% | |
| ! | CAACAGAAACTCTAAAAGAT+GGG | + | chr4_1:17784087-17784106 | None:intergenic | 30.0% |
| ! | GTCTTTAGAGAATGTATGTT+TGG | + | chr4_1:17784146-17784165 | None:intergenic | 30.0% |
| TTGTTGAAATGATAAGAAGG+TGG | + | chr4_1:17784190-17784209 | None:intergenic | 30.0% | |
| GCATTGTTGAAATGATAAGA+AGG | + | chr4_1:17784193-17784212 | None:intergenic | 30.0% | |
| AAACAATGCCAAAAGATACT+TGG | + | chr4_1:17784251-17784270 | None:intergenic | 30.0% | |
| TTCAAAAACTAAACTTCAGG+AGG | - | chr4_1:17784269-17784288 | Msa0538460:CDS | 30.0% | |
| GATTCTTCCAAAATTATCTC+GGG | - | chr4_1:17784367-17784386 | Msa0538460:intron | 30.0% | |
| ATTCTTCCAAAATTATCTCG+GGG | - | chr4_1:17784368-17784387 | Msa0538460:intron | 30.0% | |
| ! | GAATTTTCTTCTACTAACCT+TGG | + | chr4_1:17784398-17784417 | None:intergenic | 30.0% |
| !!! | ATGGATCTTCTTTTGATTTC+AGG | - | chr4_1:17784425-17784444 | Msa0538460:intron | 30.0% |
| !!! | TGGATCTTCTTTTGATTTCA+GGG | - | chr4_1:17784426-17784445 | Msa0538460:intron | 30.0% |
| !! | TCAATGTTGGTAATACTTTG+AGG | + | chr4_1:17784697-17784716 | None:intergenic | 30.0% |
| GTTTAACTGAGAAAAACTGT+AGG | + | chr4_1:17784817-17784836 | None:intergenic | 30.0% | |
| TTAGGCATCATGTTAAACAT+TGG | + | chr4_1:17785260-17785279 | None:intergenic | 30.0% | |
| !!! | AATGTTTTGGCAAACAACTT+AGG | + | chr4_1:17785278-17785297 | None:intergenic | 30.0% |
| ! | CTCAAACAGGTAAAATGTTT+TGG | + | chr4_1:17785291-17785310 | None:intergenic | 30.0% |
| GTTTGTGATATACTATACCA+TGG | + | chr4_1:17785394-17785413 | None:intergenic | 30.0% | |
| TGAGTAGAAACACATACAAT+GGG | + | chr4_1:17785654-17785673 | None:intergenic | 30.0% | |
| ATGAGTAGAAACACATACAA+TGG | + | chr4_1:17785655-17785674 | None:intergenic | 30.0% | |
| ! | AGATTCAGAACTGTTTTATC+AGG | - | chr4_1:17785731-17785750 | Msa0538460:intron | 30.0% |
| ! | GATTCAGAACTGTTTTATCA+GGG | - | chr4_1:17785732-17785751 | Msa0538460:intron | 30.0% |
| ! | TTGTAAGTTGGATGAACTTA+GGG | - | chr4_1:17785902-17785921 | Msa0538460:intron | 30.0% |
| ATGCTGCAAATATCACTTAT+AGG | - | chr4_1:17786120-17786139 | Msa0538460:intron | 30.0% | |
| GTTGCAATTACATTGCAAAA+TGG | - | chr4_1:17786180-17786199 | Msa0538460:intron | 30.0% | |
| AATTTATGGCTTAGTGTTAG+AGG | + | chr4_1:17786513-17786532 | None:intergenic | 30.0% | |
| !!! | TATAAAGGATTTTGAGGTCT+CGG | + | chr4_1:17786669-17786688 | None:intergenic | 30.0% |
| ! | CCACAATATAAAGGATTTTG+AGG | + | chr4_1:17786675-17786694 | None:intergenic | 30.0% |
| CCTCAAAATCCTTTATATTG+TGG | - | chr4_1:17786672-17786691 | Msa0538460:intron | 30.0% | |
| CAATTGTAGCCACAATATAA+AGG | + | chr4_1:17786684-17786703 | None:intergenic | 30.0% | |
| !!! | TGCAATATGGTTTTAAACAG+CGG | + | chr4_1:17786717-17786736 | None:intergenic | 30.0% |
| GTGTTCAATAAAAATGGCTA+TGG | - | chr4_1:17786775-17786794 | Msa0538460:intron | 30.0% | |
| ! | CATATATGCATGACTTTTGA+TGG | + | chr4_1:17786841-17786860 | None:intergenic | 30.0% |
| CATATATGAAAAACTTCTCC+AGG | - | chr4_1:17786853-17786872 | Msa0538460:intron | 30.0% | |
| CCCTGATAAAATTAAAAACC+TGG | + | chr4_1:17786874-17786893 | None:intergenic | 30.0% | |
| ATTGCAAATGAAAATCAGGT+TGG | + | chr4_1:17786921-17786940 | None:intergenic | 30.0% | |
| CTCTATTGCAAATGAAAATC+AGG | + | chr4_1:17786925-17786944 | None:intergenic | 30.0% | |
| GCATAATAATATGTAAGGTC+TGG | - | chr4_1:17787167-17787186 | Msa0538460:intron | 30.0% | |
| !!! | TTTTTTTTTTGGTGATGGTC+GGG | + | chr4_1:17787202-17787221 | None:intergenic | 30.0% |
| AATATTATTCCCACAGTTTC+CGG | + | chr4_1:17787262-17787281 | None:intergenic | 30.0% | |
| GAAACTGTGGGAATAATATT+TGG | - | chr4_1:17787262-17787281 | Msa0538460:intron | 30.0% | |
| ATGCAAAAGAAAGTTTACTC+CGG | - | chr4_1:17787315-17787334 | Msa0538460:intron | 30.0% | |
| AAGTTTACTCCGGTAAATTA+TGG | - | chr4_1:17787325-17787344 | Msa0538460:intron | 30.0% | |
| ATTACTCCTCCATAATTTAC+CGG | + | chr4_1:17787337-17787356 | None:intergenic | 30.0% | |
| GTAAATTATGGAGGAGTAAT+AGG | - | chr4_1:17787337-17787356 | Msa0538460:intron | 30.0% | |
| AAGGAATATAAGTGAGATGT+GGG | - | chr4_1:17787360-17787379 | Msa0538460:intron | 30.0% | |
| TGAGATGTGGGAATAATATT+TGG | - | chr4_1:17787372-17787391 | Msa0538460:intron | 30.0% | |
| ATGCAAAAGAAAGTTTACTC+CGG | - | chr4_1:17787315-17787334 | Msa0538460:intron | 30.0% | |
| AAGTTTACTCCGGTAAATTA+TGG | - | chr4_1:17787325-17787344 | Msa0538460:intron | 30.0% | |
| ATTACTCCTCCATAATTTAC+CGG | + | chr4_1:17787337-17787356 | None:intergenic | 30.0% | |
| GTAAATTATGGAGGAGTAAT+AGG | - | chr4_1:17787337-17787356 | Msa0538460:intron | 30.0% | |
| ACAAAAACCTATGAGTAAGA+AGG | - | chr4_1:17787958-17787977 | Msa0538460:intron | 30.0% | |
| CTTGGTAAATGAAGAAGTAA+CGG | - | chr4_1:17788054-17788073 | Msa0538460:intron | 30.0% | |
| ATTACGTCAACAAGTTTGAT+AGG | - | chr4_1:17788194-17788213 | Msa0538460:intron | 30.0% | |
| TAGGATTATATCAGAGTTGA+AGG | - | chr4_1:17788213-17788232 | Msa0538460:intron | 30.0% | |
| CAAGGATTCTTTGATACTAA+AGG | - | chr4_1:17788445-17788464 | Msa0538460:intron | 30.0% | |
| AAAGGGATGACTAATGAAAA+AGG | - | chr4_1:17788463-17788482 | Msa0538460:intron | 30.0% | |
| !! | GAAAGACCATGTTTTAAATG+TGG | - | chr4_1:17788532-17788551 | Msa0538460:intron | 30.0% |
| TAGTAAACCACTTCCTATTT+GGG | + | chr4_1:17788770-17788789 | None:intergenic | 30.0% | |
| ACTACCTACCAAAGTATAAA+TGG | - | chr4_1:17788786-17788805 | Msa0538460:CDS | 30.0% | |
| !! | AAATGGTGGAACTGTTTTAA+TGG | - | chr4_1:17788803-17788822 | Msa0538460:CDS | 30.0% |
| !!! | AATGGTGGAACTGTTTTAAT+GGG | - | chr4_1:17788804-17788823 | Msa0538460:CDS | 30.0% |
| ATAAGAATCAAGATGCATGA+TGG | - | chr4_1:17788864-17788883 | Msa0538460:CDS | 30.0% | |
| ! | CGGAAAAATCTTATTTCTCT+TGG | - | chr4_1:17788930-17788949 | Msa0538460:CDS | 30.0% |
| TATTTCTCTTGGTATACTAG+AGG | - | chr4_1:17788941-17788960 | Msa0538460:CDS | 30.0% | |
| AAAAATTGTATGTGGTTCGT+TGG | - | chr4_1:17789001-17789020 | Msa0538460:CDS | 30.0% | |
| TCTAAAAGATGGGTGACAAT+TGG | + | chr4_1:17784077-17784096 | None:intergenic | 35.0% | |
| ! | GCAACAGAAACTCTAAAAGA+TGG | + | chr4_1:17784088-17784107 | None:intergenic | 35.0% |
| TGTTGCAGTTCCATTTGTTT+GGG | - | chr4_1:17784102-17784121 | Msa0538460:CDS | 35.0% | |
| TTGAAATGATAAGAAGGTGG+AGG | + | chr4_1:17784187-17784206 | None:intergenic | 35.0% | |
| ! | TTGATGGCAATGAAAACGAA+GGG | + | chr4_1:17784345-17784364 | None:intergenic | 35.0% |
| ! | ATTGATGGCAATGAAAACGA+AGG | + | chr4_1:17784346-17784365 | None:intergenic | 35.0% |
| !!! | GGATCTTCTTTTGATTTCAG+GGG | - | chr4_1:17784427-17784446 | Msa0538460:intron | 35.0% |
| ! | AATACCTTCAATCTGAAGTG+TGG | + | chr4_1:17784590-17784609 | None:intergenic | 35.0% |
| TTGAATGTAACCACATGTGT+CGG | + | chr4_1:17784654-17784673 | None:intergenic | 35.0% | |
| ! | TGTCAAATGTTGCTTAGAGT+TGG | - | chr4_1:17784763-17784782 | Msa0538460:CDS | 35.0% |
| TAGCTTAACTCATCCTCTAT+AGG | - | chr4_1:17785131-17785150 | Msa0538460:intron | 35.0% | |
| ! | ACCTGTTTGAGCTAATTTGT+CGG | - | chr4_1:17785300-17785319 | Msa0538460:intron | 35.0% |
| TCCATATGCACATGTAACTT+GGG | + | chr4_1:17785368-17785387 | None:intergenic | 35.0% | |
| TGTGATATACTATACCATGG+TGG | + | chr4_1:17785391-17785410 | None:intergenic | 35.0% | |
| GAGTAGAAACACATACAATG+GGG | + | chr4_1:17785653-17785672 | None:intergenic | 35.0% | |
| ! | CTTGTAAGTTGGATGAACTT+AGG | - | chr4_1:17785901-17785920 | Msa0538460:intron | 35.0% |
| ! | TGTAAGTTGGATGAACTTAG+GGG | - | chr4_1:17785903-17785922 | Msa0538460:intron | 35.0% |
| AAGTGATATTTGCAGCATTG+CGG | + | chr4_1:17786118-17786137 | None:intergenic | 35.0% | |
| !!! | TAGGTTTTAAATTGCAGTCG+CGG | - | chr4_1:17786158-17786177 | Msa0538460:intron | 35.0% |
| CCATTAAATTGACAGCTCTA+CGG | + | chr4_1:17786226-17786245 | None:intergenic | 35.0% | |
| GCTGTCAATTTAATGGAGTT+CGG | - | chr4_1:17786230-17786249 | Msa0538460:intron | 35.0% | |
| !! | ATTTTTCAGCGAAAAACAGG+TGG | - | chr4_1:17786326-17786345 | Msa0538460:intron | 35.0% |
| !!! | CTTGATGGAGGTTTTTTATG+AGG | - | chr4_1:17786598-17786617 | Msa0538460:intron | 35.0% |
| !!! | TTTTTTTTTGGTGATGGTCG+GGG | + | chr4_1:17787201-17787220 | None:intergenic | 35.0% |
| TCAAAAATACCGGAAACTGT+GGG | - | chr4_1:17787229-17787248 | Msa0538460:intron | 35.0% | |
| TTTACTCCGGTAAATTATGG+AGG | - | chr4_1:17787328-17787347 | Msa0538460:intron | 35.0% | |
| ATTATGGAGGAGTAATAGGA+AGG | - | chr4_1:17787341-17787360 | Msa0538460:intron | 35.0% | |
| GAAGGAATATAAGTGAGATG+TGG | - | chr4_1:17787359-17787378 | Msa0538460:intron | 35.0% | |
| TTTACTCCGGTAAATTATGG+AGG | - | chr4_1:17787328-17787347 | Msa0538460:intron | 35.0% | |
| ATTATGGAGGAGTAATAGGA+AGG | - | chr4_1:17787341-17787360 | Msa0538460:intron | 35.0% | |
| AGGAAGGATATATAAGTGAG+AGG | - | chr4_1:17787467-17787486 | Msa0538460:intron | 35.0% | |
| AAGTGAGAGGCTTATATTTG+TGG | - | chr4_1:17787480-17787499 | Msa0538460:intron | 35.0% | |
| ACATAGAGTGTAACAAAGTG+AGG | - | chr4_1:17787583-17787602 | Msa0538460:intron | 35.0% | |
| ACTAGTAGAAGCCATTGTAT+TGG | + | chr4_1:17787810-17787829 | None:intergenic | 35.0% | |
| AATACAATGGCTTCTACTAG+TGG | - | chr4_1:17787809-17787828 | Msa0538460:intron | 35.0% | |
| TCTCTCAAGGCATAAGATTA+TGG | + | chr4_1:17788023-17788042 | None:intergenic | 35.0% | |
| CATCTTGCATGCATACAATT+TGG | + | chr4_1:17788152-17788171 | None:intergenic | 35.0% | |
| CAAATTGTATGCATGCAAGA+TGG | - | chr4_1:17788150-17788169 | Msa0538460:intron | 35.0% | |
| AAAGCAATAACATGAGTGCT+TGG | + | chr4_1:17788267-17788286 | None:intergenic | 35.0% | |
| ! | ACTAGATTTTCGTAAGACTC+TGG | + | chr4_1:17788295-17788314 | None:intergenic | 35.0% |
| AGTTCAAACATTGATGCTTG+TGG | - | chr4_1:17788312-17788331 | Msa0538460:intron | 35.0% | |
| GTTCAAACATTGATGCTTGT+GGG | - | chr4_1:17788313-17788332 | Msa0538460:intron | 35.0% | |
| ! | TGTGGGTGATACTCTAAAAA+TGG | - | chr4_1:17788330-17788349 | Msa0538460:intron | 35.0% |
| ATCTAAATCTACACCTCTTG+TGG | - | chr4_1:17788510-17788529 | Msa0538460:intron | 35.0% | |
| ! | AGCTGACCACATTTAAAACA+TGG | + | chr4_1:17788541-17788560 | None:intergenic | 35.0% |
| AAGCACATTGTCCAAATAAG+AGG | - | chr4_1:17788572-17788591 | Msa0538460:intron | 35.0% | |
| AGCACATTGTCCAAATAAGA+GGG | - | chr4_1:17788573-17788592 | Msa0538460:intron | 35.0% | |
| !! | CAAATCTTGTTGTTTGCCTT+TGG | + | chr4_1:17788634-17788653 | None:intergenic | 35.0% |
| GAGTTATGTCTCAAATGAAG+AGG | - | chr4_1:17788662-17788681 | Msa0538460:CDS | 35.0% | |
| TCCACTTACCAAAAATGTTG+CGG | + | chr4_1:17788716-17788735 | None:intergenic | 35.0% | |
| GTAGTAAACCACTTCCTATT+TGG | + | chr4_1:17788771-17788790 | None:intergenic | 35.0% | |
| ACCTACCAAAGTATAAATGG+TGG | - | chr4_1:17788789-17788808 | Msa0538460:CDS | 35.0% | |
| TCCACCATTTATACTTTGGT+AGG | + | chr4_1:17788793-17788812 | None:intergenic | 35.0% | |
| CAGTTCCACCATTTATACTT+TGG | + | chr4_1:17788797-17788816 | None:intergenic | 35.0% | |
| ! | AATCAAGATGCATGATGGAA+TGG | - | chr4_1:17788869-17788888 | Msa0538460:CDS | 35.0% |
| TGAGACATGTTCCAAATTTG+CGG | - | chr4_1:17788910-17788929 | Msa0538460:CDS | 35.0% | |
| CTTGGTATACTAGAGGAAAA+TGG | - | chr4_1:17788948-17788967 | Msa0538460:CDS | 35.0% | |
| CTGTTGCAGTTCCATTTGTT+TGG | - | chr4_1:17784101-17784120 | Msa0538460:CDS | 40.0% | |
| GGTTGAGATTCCCAAACAAA+TGG | + | chr4_1:17784115-17784134 | None:intergenic | 40.0% | |
| TTTGTTTGGGAATCTCAACC+TGG | - | chr4_1:17784115-17784134 | Msa0538460:CDS | 40.0% | |
| AATGTATGTTTGGGAGTTCC+AGG | + | chr4_1:17784136-17784155 | None:intergenic | 40.0% | |
| ! | ATAAGAAGGTGGAGGTGTAA+GGG | + | chr4_1:17784179-17784198 | None:intergenic | 40.0% |
| CGATGACAAAGAAGATGATG+AGG | + | chr4_1:17784317-17784336 | None:intergenic | 40.0% | |
| TTCAGGGGTGAAAATGAAGA+TGG | - | chr4_1:17784442-17784461 | Msa0538460:intron | 40.0% | |
| CCAAAGCACAAAGTAGAAGT+TGG | + | chr4_1:17784478-17784497 | None:intergenic | 40.0% | |
| CCAACTTCTACTTTGTGCTT+TGG | - | chr4_1:17784475-17784494 | Msa0538460:CDS | 40.0% | |
| GCTTCCAAAGTAACTACAAG+AGG | - | chr4_1:17784527-17784546 | Msa0538460:CDS | 40.0% | |
| ! | GTGTCGGTATTGTATGATGT+TGG | + | chr4_1:17784638-17784657 | None:intergenic | 40.0% |
| TCATACAATACCGACACATG+TGG | - | chr4_1:17784641-17784660 | Msa0538460:CDS | 40.0% | |
| CAACATTGACGTTTCAGTGT+CGG | - | chr4_1:17784708-17784727 | Msa0538460:CDS | 40.0% | |
| ! | ATGTTGCTTAGAGTTGGTTC+TGG | - | chr4_1:17784769-17784788 | Msa0538460:CDS | 40.0% |
| TCCCAAGTTACATGTGCATA+TGG | - | chr4_1:17785364-17785383 | Msa0538460:intron | 40.0% | |
| GTCCATATGCACATGTAACT+TGG | + | chr4_1:17785369-17785388 | None:intergenic | 40.0% | |
| CTCTCGACTTTCAAGCTTAT+TGG | - | chr4_1:17785586-17785605 | Msa0538460:intron | 40.0% | |
| GAAGCTTAGCCCATCTAAAT+TGG | - | chr4_1:17785953-17785972 | Msa0538460:intron | 40.0% | |
| ! | TTGGTATTAGCTTGGGATCT+GGG | + | chr4_1:17786022-17786041 | None:intergenic | 40.0% |
| ! | ATTGGTATTAGCTTGGGATC+TGG | + | chr4_1:17786023-17786042 | None:intergenic | 40.0% |
| AGTGATATTTGCAGCATTGC+GGG | + | chr4_1:17786117-17786136 | None:intergenic | 40.0% | |
| CCGTAGAGCTGTCAATTTAA+TGG | - | chr4_1:17786223-17786242 | Msa0538460:intron | 40.0% | |
| AACATAGGGGCCAACATTAA+AGG | - | chr4_1:17786572-17786591 | Msa0538460:intron | 40.0% | |
| ACATAGGGGCCAACATTAAA+GGG | - | chr4_1:17786573-17786592 | Msa0538460:intron | 40.0% | |
| CATCAAGTCCCCTTTAATGT+TGG | + | chr4_1:17786585-17786604 | None:intergenic | 40.0% | |
| CAACATTAAAGGGGACTTGA+TGG | - | chr4_1:17786583-17786602 | Msa0538460:intron | 40.0% | |
| ! | TTATGAGGAGCTTTGTGCTT+TGG | - | chr4_1:17786613-17786632 | Msa0538460:intron | 40.0% |
| ! | TATGAGGAGCTTTGTGCTTT+GGG | - | chr4_1:17786614-17786633 | Msa0538460:intron | 40.0% |
| ! | TGTGGCTACAATTGCTGTTA+CGG | - | chr4_1:17786690-17786709 | Msa0538460:intron | 40.0% |
| ATGCAGCTATCTTATGCTTG+AGG | + | chr4_1:17786981-17787000 | None:intergenic | 40.0% | |
| CGTGACTCACAACTAGAATT+TGG | + | chr4_1:17787031-17787050 | None:intergenic | 40.0% | |
| GTCAAAAATACCGGAAACTG+TGG | - | chr4_1:17787228-17787247 | Msa0538460:intron | 40.0% | |
| GGTATTATTCCCACAGTTTC+CGG | + | chr4_1:17787241-17787260 | None:intergenic | 40.0% | |
| GGAAACTGTGGGAATAATAC+CGG | - | chr4_1:17787240-17787259 | Msa0538460:intron | 40.0% | |
| GGAATAATACCGGAAACTGT+GGG | - | chr4_1:17787250-17787269 | Msa0538460:intron | 40.0% | |
| !! | TTGGCTCTGATACCAATTGT+TGG | + | chr4_1:17787747-17787766 | None:intergenic | 40.0% |
| ! | TTCTACTAGTGGATCAGTCA+AGG | - | chr4_1:17787820-17787839 | Msa0538460:intron | 40.0% |
| TTTCATCTGCATCCACCAAT+AGG | + | chr4_1:17787891-17787910 | None:intergenic | 40.0% | |
| ! | AAAGTTGCACAAGGCATTAG+CGG | - | chr4_1:17787928-17787947 | Msa0538460:intron | 40.0% |
| ACCTATGAGTAAGAAGGATG+AGG | - | chr4_1:17787964-17787983 | Msa0538460:intron | 40.0% | |
| TCCTCATCCTTCTTACTCAT+AGG | + | chr4_1:17787968-17787987 | None:intergenic | 40.0% | |
| TGAGTAAGAAGGATGAGGAT+TGG | - | chr4_1:17787969-17787988 | Msa0538460:intron | 40.0% | |
| GAGTAAGAAGGATGAGGATT+GGG | - | chr4_1:17787970-17787989 | Msa0538460:intron | 40.0% | |
| CTCAAGGCATAAGATTATGG+CGG | + | chr4_1:17788020-17788039 | None:intergenic | 40.0% | |
| GGTAAATGAAGAAGTAACGG+CGG | - | chr4_1:17788057-17788076 | Msa0538460:intron | 40.0% | |
| ATTGTATGCATGCAAGATGG+AGG | - | chr4_1:17788153-17788172 | Msa0538460:intron | 40.0% | |
| TAGCAGTGGAAGAGAATACA+AGG | - | chr4_1:17788414-17788433 | Msa0538460:intron | 40.0% | |
| GAATACAAGGAACAAGCTCA+AGG | - | chr4_1:17788427-17788446 | Msa0538460:intron | 40.0% | |
| AAACATGGTCTTTCCACAAG+AGG | + | chr4_1:17788526-17788545 | None:intergenic | 40.0% | |
| ! | TTTGGAGTTGTTGTCGTTGT+TGG | + | chr4_1:17788616-17788635 | None:intergenic | 40.0% |
| AACAACGACAACAACTCCAA+AGG | - | chr4_1:17788615-17788634 | Msa0538460:CDS | 40.0% | |
| AGGCAAACAACAAGATTTGC+CGG | - | chr4_1:17788635-17788654 | Msa0538460:CDS | 40.0% | |
| ! | CAGAAAGACCGCAACATTTT+TGG | - | chr4_1:17788705-17788724 | Msa0538460:CDS | 40.0% |
| !!! | ACCGCAACATTTTTGGTAAG+TGG | - | chr4_1:17788712-17788731 | Msa0538460:CDS | 40.0% |
| TGGTAAGTGGATGCTTGATT+CGG | - | chr4_1:17788725-17788744 | Msa0538460:CDS | 40.0% | |
| ACTTCCTATTTGGGCACATA+TGG | + | chr4_1:17788761-17788780 | None:intergenic | 40.0% | |
| ATATGTGCCCAAATAGGAAG+TGG | - | chr4_1:17788760-17788779 | Msa0538460:CDS | 40.0% | |
| ! | TTAATGGGTAACAACCATGC+CGG | - | chr4_1:17788819-17788838 | Msa0538460:CDS | 40.0% |
| AACCATGCCGGTAAAATTGA+GGG | - | chr4_1:17788831-17788850 | Msa0538460:CDS | 40.0% | |
| ! | ACCATACCCCTCAATTTTAC+CGG | + | chr4_1:17788841-17788860 | None:intergenic | 40.0% |
| GGAACATGTCTCACATTCAT+CGG | + | chr4_1:17788903-17788922 | None:intergenic | 40.0% | |
| ! | TAAGAAGGTGGAGGTGTAAG+GGG | + | chr4_1:17784178-17784197 | None:intergenic | 45.0% |
| ! | GATAAGAAGGTGGAGGTGTA+AGG | + | chr4_1:17784180-17784199 | None:intergenic | 45.0% |
| CACGCCTCTTGTAGTTACTT+TGG | + | chr4_1:17784534-17784553 | None:intergenic | 45.0% | |
| GCATCCACACTTCAGATTGA+AGG | - | chr4_1:17784583-17784602 | Msa0538460:CDS | 45.0% | |
| CGACACTGAAACGTCAATGT+TGG | + | chr4_1:17784710-17784729 | None:intergenic | 45.0% | |
| !! | GCTTAGAGTTGGTTCTGGTT+TGG | - | chr4_1:17784774-17784793 | Msa0538460:CDS | 45.0% |
| GCCGACAAATTAGCTCAAAC+AGG | + | chr4_1:17785304-17785323 | None:intergenic | 45.0% | |
| ! | TTGAGCTAATTTGTCGGCAG+AGG | - | chr4_1:17785306-17785325 | Msa0538460:intron | 45.0% |
| AGCTTGAAAGTCGAGAGAAG+TGG | + | chr4_1:17785583-17785602 | None:intergenic | 45.0% | |
| ! | AACACATACAATGGGGCACT+TGG | + | chr4_1:17785646-17785665 | None:intergenic | 45.0% |
| TAGCCCATCTAAATTGGCAC+CGG | - | chr4_1:17785959-17785978 | Msa0538460:intron | 45.0% | |
| ! | TCTCCGGTGCCAATTTAGAT+GGG | + | chr4_1:17785965-17785984 | None:intergenic | 45.0% |
| ATCTCAGGTTCGATTCTCTC+CGG | + | chr4_1:17785981-17786000 | None:intergenic | 45.0% | |
| TCGAACCTGAGATCTCAAGT+AGG | - | chr4_1:17785988-17786007 | Msa0538460:intron | 45.0% | |
| ACGGCATAGTGGTTGCAATT+TGG | + | chr4_1:17786207-17786226 | None:intergenic | 45.0% | |
| TTTAATGGAGTTCGGAGCTC+CGG | - | chr4_1:17786238-17786257 | Msa0538460:intron | 45.0% | |
| TTTCAGCGAAAAACAGGTGG+TGG | - | chr4_1:17786329-17786348 | Msa0538460:intron | 45.0% | |
| TTCAGCGAAAAACAGGTGGT+GGG | - | chr4_1:17786330-17786349 | Msa0538460:intron | 45.0% | |
| ATCACAGCCATCAACACTAC+CGG | + | chr4_1:17786385-17786404 | None:intergenic | 45.0% | |
| GTGTTAGAGGCTACTGTTAG+AGG | + | chr4_1:17786500-17786519 | None:intergenic | 45.0% | |
| CATAGGGGCCAACATTAAAG+GGG | - | chr4_1:17786574-17786593 | Msa0538460:intron | 45.0% | |
| CATTAAAGGGGACTTGATGG+AGG | - | chr4_1:17786586-17786605 | Msa0538460:intron | 45.0% | |
| ! | ATGAGGAGCTTTGTGCTTTG+GGG | - | chr4_1:17786615-17786634 | Msa0538460:intron | 45.0% |
| GGGCTTAATTGACACCTCTA+GGG | - | chr4_1:17786635-17786654 | Msa0538460:intron | 45.0% | |
| GTTGGCATGTTCTGCATTTC+TGG | + | chr4_1:17786903-17786922 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr4_1:17787139-17787158 | Msa0538460:intron | 45.0% |
| GGGAATAATACCGGAAACTG+TGG | - | chr4_1:17787249-17787268 | Msa0538460:intron | 45.0% | |
| ! | ACTAGTGGATCAGTCAAGGT+CGG | - | chr4_1:17787824-17787843 | Msa0538460:intron | 45.0% |
| ! | AAGTTGCACAAGGCATTAGC+GGG | - | chr4_1:17787929-17787948 | Msa0538460:intron | 45.0% |
| AGAACGCAACATCTCTCTCA+AGG | + | chr4_1:17788036-17788055 | None:intergenic | 45.0% | |
| TGAGAGAGATGTTGCGTTCT+TGG | - | chr4_1:17788036-17788055 | Msa0538460:intron | 45.0% | |
| TATGCATGCAAGATGGAGGA+AGG | - | chr4_1:17788157-17788176 | Msa0538460:intron | 45.0% | |
| GACTAGAACATCACTCGTAG+CGG | - | chr4_1:17788357-17788376 | Msa0538460:intron | 45.0% | |
| ! | ACAAGTTGGATGTCTAGCAG+TGG | - | chr4_1:17788400-17788419 | Msa0538460:intron | 45.0% |
| CAAACAACAAGATTTGCCGG+AGG | - | chr4_1:17788638-17788657 | Msa0538460:CDS | 45.0% | |
| ! | TTTGAGACATAACTCGCCTC+CGG | + | chr4_1:17788657-17788676 | None:intergenic | 45.0% |
| GGTAAGTGGATGCTTGATTC+GGG | - | chr4_1:17788726-17788745 | Msa0538460:CDS | 45.0% | |
| ATTTGGGCACATATGGTGTG+AGG | + | chr4_1:17788754-17788773 | None:intergenic | 45.0% | |
| CACACCATATGTGCCCAAAT+AGG | - | chr4_1:17788754-17788773 | Msa0538460:CDS | 45.0% | |
| CAACCATGCCGGTAAAATTG+AGG | - | chr4_1:17788830-17788849 | Msa0538460:CDS | 45.0% | |
| ACCATGCCGGTAAAATTGAG+GGG | - | chr4_1:17788832-17788851 | Msa0538460:CDS | 45.0% | |
| ! | TGGTTCGTTGGTTGTGATGA+AGG | - | chr4_1:17789013-17789032 | Msa0538460:CDS | 45.0% |
| ! | GGTTCGTTGGTTGTGATGAA+GGG | - | chr4_1:17789014-17789033 | Msa0538460:CDS | 45.0% |
| !! | AAAATAATAATTATAATTAG+TGG | - | chr4_1:17786465-17786484 | Msa0538460:intron | 5.0% |
| !! | AAATAATAATTATAATTAGT+GGG | - | chr4_1:17786466-17786485 | Msa0538460:intron | 5.0% |
| ! | GGTCGTCCCCGAGATAATTT+TGG | + | chr4_1:17784377-17784396 | None:intergenic | 50.0% |
| AATTATCTCGGGGACGACCA+AGG | - | chr4_1:17784378-17784397 | Msa0538460:intron | 50.0% | |
| TTTGTCGGCAGAGGAGTTGA+TGG | - | chr4_1:17785315-17785334 | Msa0538460:intron | 50.0% | |
| CATGTGCATATGGACCACCA+TGG | - | chr4_1:17785374-17785393 | Msa0538460:intron | 50.0% | |
| TTATTGGATCCCCAGCAGTG+CGG | - | chr4_1:17785602-17785621 | Msa0538460:intron | 50.0% | |
| ! | CTCTCCGGTGCCAATTTAGA+TGG | + | chr4_1:17785966-17785985 | None:intergenic | 50.0% |
| GTGCTCCTACTTGAGATCTC+AGG | + | chr4_1:17785996-17786015 | None:intergenic | 50.0% | |
| TATTTGCAGCATTGCGGGTG+AGG | + | chr4_1:17786112-17786131 | None:intergenic | 50.0% | |
| TTGACAGCTCTACGGCATAG+TGG | + | chr4_1:17786218-17786237 | None:intergenic | 50.0% | |
| GACCTACATAACTCCACCAC+CGG | + | chr4_1:17786278-17786297 | None:intergenic | 50.0% | |
| GGTGGAGTTATGTAGGTCGA+CGG | - | chr4_1:17786280-17786299 | Msa0538460:intron | 50.0% | |
| GGCTACTGTTAGAGGCTTCA+AGG | + | chr4_1:17786492-17786511 | None:intergenic | 50.0% | |
| GGGGCTTAATTGACACCTCT+AGG | - | chr4_1:17786634-17786653 | Msa0538460:intron | 50.0% | |
| ACTCGTGAGCTTAGCTCAGT+TGG | - | chr4_1:17787134-17787153 | Msa0538460:intron | 50.0% | |
| ACCAATTGTTGGTGCAGCAG+CGG | + | chr4_1:17787736-17787755 | None:intergenic | 50.0% | |
| AATGAAGAAGTAACGGCGGC+TGG | - | chr4_1:17788061-17788080 | Msa0538460:intron | 50.0% | |
| ATGAAGAAGTAACGGCGGCT+GGG | - | chr4_1:17788062-17788081 | Msa0538460:intron | 50.0% | |
| TGGAGGAAGGCAACTCAATC+TGG | - | chr4_1:17788170-17788189 | Msa0538460:intron | 50.0% | |
| GGAGGAAGGCAACTCAATCT+GGG | - | chr4_1:17788171-17788190 | Msa0538460:intron | 50.0% | |
| TGCGAATCGCTGCTACAAGT+TGG | - | chr4_1:17788386-17788405 | Msa0538460:intron | 50.0% | |
| ! | ACCCCTCAATTTTACCGGCA+TGG | + | chr4_1:17788836-17788855 | None:intergenic | 50.0% |
| GCCGGTAAAATTGAGGGGTA+TGG | - | chr4_1:17788837-17788856 | Msa0538460:CDS | 50.0% | |
| CGTTCGATCAGCTCGAACAG+TGG | - | chr4_1:17784505-17784524 | Msa0538460:CDS | 55.0% | |
| ! | TGGGGCACTTGGATCCCTTA+CGG | + | chr4_1:17785635-17785654 | None:intergenic | 55.0% |
| !! | CTCCGGTGGTGGAGTTATGT+AGG | - | chr4_1:17786273-17786292 | Msa0538460:intron | 55.0% |
| GGAGTTATGTAGGTCGACGG+TGG | - | chr4_1:17786283-17786302 | Msa0538460:intron | 55.0% | |
| !! | AGCGAAAAACAGGTGGTGGG+CGG | - | chr4_1:17786333-17786352 | Msa0538460:intron | 55.0% |
| TCCGCTGCTGCACCAACAAT+TGG | - | chr4_1:17787732-17787751 | Msa0538460:intron | 55.0% | |
| TGAAGAAGTAACGGCGGCTG+GGG | - | chr4_1:17788063-17788082 | Msa0538460:intron | 55.0% | |
| ! | GAAGGTGGAGGTGTAAGGGG+AGG | + | chr4_1:17784175-17784194 | None:intergenic | 60.0% |
| AGTGCGGTGCAGCACCGTAA+GGG | - | chr4_1:17785618-17785637 | Msa0538460:intron | 60.0% | |
| TGTAGGTCGACGGTGGTGCA+CGG | - | chr4_1:17786290-17786309 | Msa0538460:intron | 60.0% | |
| !! | GAAAAACAGGTGGTGGGCGG+TGG | - | chr4_1:17786336-17786355 | Msa0538460:intron | 60.0% |
| ! | CGGAGCTCCGGTAGTGTTGA+TGG | - | chr4_1:17786375-17786394 | Msa0538460:intron | 60.0% |
| !! | TTGACACCTCTAGGGTGCCG+CGG | - | chr4_1:17786643-17786662 | Msa0538460:intron | 60.0% |
| !!! | GGATTTTGAGGTCTCGGCCG+CGG | + | chr4_1:17786663-17786682 | None:intergenic | 60.0% |
| CAGTGCGGTGCAGCACCGTA+AGG | - | chr4_1:17785617-17785636 | Msa0538460:intron | 65.0% | |
| CTCCACCACCGGAGCTACGT+GGG | + | chr4_1:17786267-17786286 | None:intergenic | 65.0% | |
| ACTCCACCACCGGAGCTACG+TGG | + | chr4_1:17786268-17786287 | None:intergenic | 65.0% | |
| AGCTCCGACAGCCACCCTAC+CGG | + | chr4_1:17786362-17786381 | None:intergenic | 65.0% | |
| TAGGGTGGCTGTCGGAGCTC+CGG | - | chr4_1:17786363-17786382 | Msa0538460:intron | 65.0% | |
| AAGTAACGGCGGCTGGGGTG+TGG | - | chr4_1:17788068-17788087 | Msa0538460:intron | 65.0% | |
| ! | GGTGCTGCACCGCACTGCTG+GGG | + | chr4_1:17785614-17785633 | None:intergenic | 70.0% |
| !! | CGGTGCTGCACCGCACTGCT+GGG | + | chr4_1:17785615-17785634 | None:intergenic | 70.0% |
| !! | ACGGTGCTGCACCGCACTGC+TGG | + | chr4_1:17785616-17785635 | None:intergenic | 70.0% |
| TCCGGCGACCCACGTAGCTC+CGG | - | chr4_1:17786256-17786275 | Msa0538460:intron | 70.0% | |
| ACCGGAGCTACGTGGGTCGC+CGG | + | chr4_1:17786260-17786279 | None:intergenic | 70.0% | |
| GACCCACGTAGCTCCGGTGG+TGG | - | chr4_1:17786262-17786281 | Msa0538460:intron | 70.0% | |
| AGGTCGACGGTGGTGCACGG+TGG | - | chr4_1:17786293-17786312 | Msa0538460:intron | 70.0% | |
| !! | AACAGGTGGTGGGCGGTGGC+CGG | - | chr4_1:17786340-17786359 | Msa0538460:intron | 70.0% |
| GTGGCCGGTAGGGTGGCTGT+CGG | - | chr4_1:17786355-17786374 | Msa0538460:intron | 70.0% | |
| GGCGACCCACGTAGCTCCGG+TGG | - | chr4_1:17786259-17786278 | Msa0538460:intron | 75.0% | |
| !! | GTGGTGGGCGGTGGCCGGTA+GGG | - | chr4_1:17786345-17786364 | Msa0538460:intron | 75.0% |
| TCTCGGCCGCGGCACCCTAG+AGG | + | chr4_1:17786652-17786671 | None:intergenic | 75.0% | |
| !!! | GGTGGTGGGCGGTGGCCGGT+AGG | - | chr4_1:17786344-17786363 | Msa0538460:intron | 80.0% |
| ! | GTGGGCGGTGGCCGGTAGGG+TGG | - | chr4_1:17786348-17786367 | Msa0538460:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 17783989 | 17789049 | 17783989 | ID=Msa0538460;Name=Msa0538460 |
| chr4_1 | mRNA | 17783989 | 17789049 | 17783989 | ID=Msa0538460-mRNA-1;Parent=Msa0538460;Name=Msa0538460-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|0.66|1|1|3|0|487 |
| chr4_1 | exon | 17788575 | 17789049 | 17788575 | ID=Msa0538460-mRNA-1:exon:5290;Parent=Msa0538460-mRNA-1 |
| chr4_1 | exon | 17784444 | 17785090 | 17784444 | ID=Msa0538460-mRNA-1:exon:5289;Parent=Msa0538460-mRNA-1 |
| chr4_1 | exon | 17783989 | 17784330 | 17783989 | ID=Msa0538460-mRNA-1:exon:5288;Parent=Msa0538460-mRNA-1 |
| chr4_1 | CDS | 17788575 | 17789049 | 17788575 | ID=Msa0538460-mRNA-1:cds;Parent=Msa0538460-mRNA-1 |
| chr4_1 | CDS | 17784444 | 17785090 | 17784444 | ID=Msa0538460-mRNA-1:cds;Parent=Msa0538460-mRNA-1 |
| chr4_1 | CDS | 17783989 | 17784330 | 17783989 | ID=Msa0538460-mRNA-1:cds;Parent=Msa0538460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
