Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539470 | AES92348.2 | 82.437 | 279 | 12 | 2 | 151 | 413 | 88 | 345 | 5.99e-156 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539470 | G7JD10 | 82.437 | 279 | 12 | 2 | 151 | 413 | 88 | 345 | 2.86e-156 | 454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0539470 | Msa0603580 | 0.918223 | 2.029652e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539470 | MtrunA17_Chr7g0267191 | 83.406 | 229 | 11 | 2 | 211 | 413 | 1 | 228 | 1.06e-133 | 383 |
| Msa0539470 | MtrunA17_Chr4g0014371 | 76.582 | 158 | 25 | 3 | 1 | 149 | 1 | 155 | 4.02e-78 | 238 |
| Msa0539470 | MtrunA17_Chr4g0007281 | 45.909 | 220 | 99 | 4 | 211 | 412 | 1 | 218 | 2.30e-51 | 172 |
| Msa0539470 | MtrunA17_Chr5g0444311 | 53.595 | 153 | 63 | 2 | 2 | 149 | 9 | 158 | 1.47e-46 | 166 |
| Msa0539470 | MtrunA17_Chr8g0362521 | 53.147 | 143 | 59 | 3 | 12 | 149 | 15 | 154 | 2.56e-42 | 154 |
| Msa0539470 | MtrunA17_Chr8g0362461 | 53.205 | 156 | 58 | 5 | 3 | 149 | 2 | 151 | 1.04e-40 | 149 |
| Msa0539470 | MtrunA17_Chr8g0360071 | 50.336 | 149 | 71 | 2 | 3 | 149 | 4 | 151 | 1.43e-38 | 144 |
| Msa0539470 | MtrunA17_Chr8g0363941 | 48.993 | 149 | 64 | 3 | 9 | 149 | 13 | 157 | 1.87e-38 | 137 |
| Msa0539470 | MtrunA17_Chr8g0362021 | 53.521 | 142 | 58 | 5 | 2 | 142 | 9 | 143 | 6.35e-37 | 140 |
| Msa0539470 | MtrunA17_Chr8g0362491 | 51.773 | 141 | 63 | 2 | 12 | 149 | 25 | 163 | 1.08e-35 | 136 |
| Msa0539470 | MtrunA17_Chr8g0360061 | 44.578 | 166 | 70 | 3 | 4 | 149 | 11 | 174 | 1.07e-33 | 131 |
| Msa0539470 | MtrunA17_Chr5g0405101 | 49.020 | 153 | 67 | 6 | 2 | 149 | 13 | 159 | 4.17e-31 | 117 |
| Msa0539470 | MtrunA17_Chr4g0025351 | 42.132 | 197 | 96 | 8 | 3 | 191 | 12 | 198 | 3.39e-30 | 121 |
| Msa0539470 | MtrunA17_Chr2g0319941 | 48.592 | 142 | 67 | 4 | 12 | 149 | 21 | 160 | 4.73e-30 | 120 |
| Msa0539470 | MtrunA17_Chr8g0362591 | 48.571 | 140 | 69 | 2 | 12 | 149 | 7 | 145 | 6.47e-30 | 120 |
| Msa0539470 | MtrunA17_Chr8g0363801 | 45.517 | 145 | 70 | 3 | 9 | 149 | 6 | 145 | 6.75e-30 | 113 |
| Msa0539470 | MtrunA17_Chr8g0362001 | 44.218 | 147 | 69 | 4 | 11 | 149 | 83 | 224 | 9.10e-28 | 112 |
| Msa0539470 | MtrunA17_Chr8g0363821 | 47.945 | 146 | 60 | 7 | 12 | 149 | 23 | 160 | 2.63e-27 | 112 |
| Msa0539470 | MtrunA17_Chr8g0340611 | 44.444 | 162 | 71 | 8 | 1 | 149 | 1 | 156 | 2.65e-27 | 106 |
| Msa0539470 | MtrunA17_Chr8g0373051 | 44.242 | 165 | 83 | 6 | 1 | 160 | 1 | 161 | 5.94e-27 | 110 |
| Msa0539470 | MtrunA17_Chr8g0363981 | 41.477 | 176 | 86 | 7 | 11 | 185 | 24 | 183 | 4.05e-25 | 106 |
| Msa0539470 | MtrunA17_Chr8g0369261 | 48.344 | 151 | 61 | 5 | 2 | 149 | 11 | 147 | 1.27e-24 | 105 |
| Msa0539470 | MtrunA17_Chr8g0363971 | 41.139 | 158 | 76 | 6 | 2 | 149 | 13 | 163 | 4.42e-24 | 103 |
| Msa0539470 | MtrunA17_Chr4g0011351 | 42.604 | 169 | 70 | 7 | 2 | 149 | 11 | 173 | 4.52e-23 | 96.3 |
| Msa0539470 | MtrunA17_Chr8g0340581 | 46.207 | 145 | 67 | 7 | 12 | 149 | 16 | 156 | 1.03e-22 | 94.4 |
| Msa0539470 | MtrunA17_Chr8g0340521 | 42.466 | 146 | 73 | 5 | 12 | 149 | 41 | 183 | 1.05e-22 | 94.7 |
| Msa0539470 | MtrunA17_Chr1g0166251 | 33.333 | 141 | 83 | 6 | 10 | 149 | 9 | 139 | 8.66e-13 | 69.3 |
| Msa0539470 | MtrunA17_Chr7g0226481 | 31.788 | 151 | 91 | 5 | 3 | 151 | 2 | 142 | 4.45e-12 | 67.0 |
| Msa0539470 | MtrunA17_Chr5g0431711 | 35.338 | 133 | 73 | 6 | 1 | 127 | 1 | 126 | 7.69e-12 | 66.6 |
| Msa0539470 | MtrunA17_Chr7g0227851 | 43.023 | 86 | 43 | 3 | 11 | 95 | 10 | 90 | 8.09e-12 | 66.2 |
| Msa0539470 | MtrunA17_Chr3g0142561 | 36.667 | 90 | 53 | 3 | 12 | 101 | 17 | 102 | 3.36e-11 | 60.5 |
| Msa0539470 | MtrunA17_Chr7g0227621 | 46.875 | 64 | 32 | 2 | 11 | 73 | 10 | 72 | 4.05e-11 | 59.7 |
| Msa0539470 | MtrunA17_Chr3g0138571 | 36.134 | 119 | 64 | 4 | 12 | 129 | 13 | 120 | 4.11e-11 | 64.3 |
| Msa0539470 | MtrunA17_Chr7g0227821 | 42.353 | 85 | 42 | 3 | 11 | 95 | 10 | 87 | 7.61e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 98 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGTTTGGATGGTGGTTT+TGG | 0.212661 | 4_1:+20438083 | None:intergenic |
| ATCCTTCACTTGAGGAATTA+TGG | 0.223714 | 4_1:-20436488 | Msa0539470:CDS |
| TAAATAATGATAGTGCATTT+TGG | 0.230389 | 4_1:-20436257 | Msa0539470:CDS |
| GGAGAAGATGTGGCGGAGTA+TGG | 0.237162 | 4_1:+20438116 | None:intergenic |
| GCTGAAAACAATCTGGAAAA+AGG | 0.256549 | 4_1:-20435866 | Msa0539470:CDS |
| AAGAATTGCATCTCACTTTA+CGG | 0.270990 | 4_1:-20437813 | Msa0539470:CDS |
| TTCGCAGGTCGAACAGAATT+AGG | 0.307499 | 4_1:+20436405 | None:intergenic |
| ACGTATAGAACACGTCTTTA+CGG | 0.313489 | 4_1:+20437881 | None:intergenic |
| CTGCAATCACAGTTATTAAT+AGG | 0.315474 | 4_1:-20435895 | Msa0539470:CDS |
| GATGCATGGGATCCTCTTAC+AGG | 0.327903 | 4_1:-20436686 | Msa0539470:CDS |
| CATCACCTTGACTAGATACT+TGG | 0.335090 | 4_1:+20436175 | None:intergenic |
| AGAGAATGTGGCACCCTCTA+TGG | 0.352571 | 4_1:-20436430 | Msa0539470:CDS |
| TCTTCCAGAGGTTGCGATAA+TGG | 0.357302 | 4_1:+20438046 | None:intergenic |
| CAATTAAGCTTTCCTGTAAG+AGG | 0.385065 | 4_1:+20436674 | None:intergenic |
| AAGAGGAAAGGAAGACAATC+AGG | 0.404151 | 4_1:-20436040 | Msa0539470:CDS |
| TTGAATTCTGATGACAGTTC+GGG | 0.410374 | 4_1:-20435950 | Msa0539470:CDS |
| CTAGCCCCTTCCATGAAATC+AGG | 0.412393 | 4_1:+20436234 | None:intergenic |
| ACGCTCGGTGTGCTTGTCTT+CGG | 0.422673 | 4_1:+20437993 | None:intergenic |
| ATTGAATTCTGATGACAGTT+CGG | 0.428887 | 4_1:-20435951 | Msa0539470:CDS |
| CGGTGTGCTTGTCTTCGGAT+TGG | 0.444201 | 4_1:+20437998 | None:intergenic |
| AAGTGAGATGCAATTCTTCA+AGG | 0.449824 | 4_1:+20437818 | None:intergenic |
| AGAACACGTCTTTACGGAAA+TGG | 0.454443 | 4_1:+20437887 | None:intergenic |
| GATGGTTGCTGAAAACAATC+TGG | 0.458713 | 4_1:-20435873 | Msa0539470:CDS |
| ATGATGATGGAAGGAAATCT+TGG | 0.471631 | 4_1:-20435769 | Msa0539470:CDS |
| GCGATAATGGCGGGAGATGA+GGG | 0.474032 | 4_1:+20438059 | None:intergenic |
| AGATGCAATTCTTCAAGGTC+TGG | 0.480288 | 4_1:+20437823 | None:intergenic |
| AGTGCTAGTGTTTGATACTA+AGG | 0.488101 | 4_1:+20435985 | None:intergenic |
| ACATGGGTACGTACCGCCAT+TGG | 0.488212 | 4_1:-20437847 | Msa0539470:CDS |
| CCCGCCATTATCGCAACCTC+TGG | 0.489631 | 4_1:-20438050 | Msa0539470:CDS |
| ACTCCTCACTTGCTCTAACC+TGG | 0.496134 | 4_1:-20437749 | Msa0539470:intron |
| TAACACCTTGGGTAGGCACT+TGG | 0.499297 | 4_1:+20436205 | None:intergenic |
| ATACGTCTTCGATTGATACA+TGG | 0.503798 | 4_1:-20437864 | Msa0539470:CDS |
| TTCTTCAAGGTCTGGTCCAA+TGG | 0.505625 | 4_1:+20437831 | None:intergenic |
| AGAAAATCATCAAGGAAAAG+AGG | 0.509942 | 4_1:-20436057 | Msa0539470:CDS |
| GTGGTGGGATAGAAAGATTA+AGG | 0.512068 | 4_1:-20436642 | Msa0539470:intron |
| TGCGATAATGGCGGGAGATG+AGG | 0.515129 | 4_1:+20438058 | None:intergenic |
| GATATGAATCATTATGAGAG+TGG | 0.516752 | 4_1:-20436333 | Msa0539470:CDS |
| CTTCAAACCTTCGATTTCGA+CGG | 0.519490 | 4_1:-20438021 | Msa0539470:CDS |
| TCGATATGATCCTCGTATCA+AGG | 0.519502 | 4_1:-20436286 | Msa0539470:CDS |
| TTCACAATCAAATGTTTCGC+AGG | 0.524012 | 4_1:+20436390 | None:intergenic |
| TTGGCCTGATTTCATGGAAG+GGG | 0.524765 | 4_1:-20436238 | Msa0539470:CDS |
| ATGAACATTGAGGATGATGA+TGG | 0.526027 | 4_1:-20435782 | Msa0539470:CDS |
| AGAAACTGGCTTAGGATGCA+TGG | 0.526148 | 4_1:-20436700 | Msa0539470:intron |
| TTTGGCCTGATTTCATGGAA+GGG | 0.532717 | 4_1:-20436239 | Msa0539470:CDS |
| TTGGGTAGCTCTAACACCTT+GGG | 0.533032 | 4_1:+20436194 | None:intergenic |
| ATGTGGCGGAGTATGGAGTC+TGG | 0.533839 | 4_1:+20438123 | None:intergenic |
| CCAGAGGTTGCGATAATGGC+GGG | 0.538761 | 4_1:+20438050 | None:intergenic |
| AATCACAGTTATTAATAGGA+TGG | 0.547499 | 4_1:-20435891 | Msa0539470:CDS |
| AGCTTAATTGTTCAGATGAG+TGG | 0.550035 | 4_1:-20436661 | Msa0539470:CDS |
| GATTGAGAATGAAGTGAGAC+GGG | 0.554128 | 4_1:-20435813 | Msa0539470:CDS |
| GAGGATGAAGATGATGAAAG+TGG | 0.563940 | 4_1:-20436363 | Msa0539470:CDS |
| TTCCATAATTCCTCAAGTGA+AGG | 0.570319 | 4_1:+20436486 | None:intergenic |
| AAGTGAGGAGTGCGAGTGGG+AGG | 0.570468 | 4_1:+20437761 | None:intergenic |
| TAGATTGCTTAGTCTGTCAA+TGG | 0.571696 | 4_1:+20438146 | None:intergenic |
| CTTGGGTAGCTCTAACACCT+TGG | 0.571756 | 4_1:+20436193 | None:intergenic |
| GAAACTGGCTTAGGATGCAT+GGG | 0.575543 | 4_1:-20436699 | Msa0539470:intron |
| GTCAATAGATCCTTCACTTG+AGG | 0.578204 | 4_1:-20436496 | Msa0539470:CDS |
| TTGAAGACAGTTATGCAGAT+GGG | 0.581966 | 4_1:-20436455 | Msa0539470:CDS |
| TTTGAAGACAGTTATGCAGA+TGG | 0.583657 | 4_1:-20436456 | Msa0539470:CDS |
| GATAATGGCGGGAGATGAGG+GGG | 0.584709 | 4_1:+20438061 | None:intergenic |
| GGAGGAAGGAGAAGATGTGG+CGG | 0.585984 | 4_1:+20438109 | None:intergenic |
| ATCACCTTGACTAGATACTT+GGG | 0.586516 | 4_1:+20436176 | None:intergenic |
| GGCAGCCAAGTGCCTACCCA+AGG | 0.587341 | 4_1:-20436210 | Msa0539470:CDS |
| TGATTGAGAATGAAGTGAGA+CGG | 0.590637 | 4_1:-20435814 | Msa0539470:CDS |
| TAATTGTTCAGATGAGTGGT+GGG | 0.591982 | 4_1:-20436657 | Msa0539470:CDS |
| AGACCAGGTTAGAGCAAGTG+AGG | 0.593011 | 4_1:+20437746 | None:intergenic |
| TGCAGATGGGACAGAGAATG+TGG | 0.593978 | 4_1:-20436442 | Msa0539470:CDS |
| TTAATTGTTCAGATGAGTGG+TGG | 0.594759 | 4_1:-20436658 | Msa0539470:CDS |
| TACGTCTTCGATTGATACAT+GGG | 0.597337 | 4_1:-20437863 | Msa0539470:CDS |
| GAGCAAGTGAGGAGTGCGAG+TGG | 0.598414 | 4_1:+20437757 | None:intergenic |
| GAGGACGGTGTTGACGAAGA+TGG | 0.598550 | 4_1:+20437957 | None:intergenic |
| ACATTTGATTGTGAATGTTG+AGG | 0.599133 | 4_1:-20436382 | Msa0539470:CDS |
| GGTGGCTAAGAAAATCATCA+AGG | 0.602795 | 4_1:-20436065 | Msa0539470:CDS |
| CGATAATGGCGGGAGATGAG+GGG | 0.602848 | 4_1:+20438060 | None:intergenic |
| ATCATCAAGGAAAAGAGGAA+AGG | 0.603284 | 4_1:-20436052 | Msa0539470:CDS |
| GGATTGGCCGTCGAAATCGA+AGG | 0.607219 | 4_1:+20438014 | None:intergenic |
| GAAAGGAAGACAATCAGGAG+GGG | 0.610966 | 4_1:-20436035 | Msa0539470:CDS |
| AGCAAGTGAGGAGTGCGAGT+GGG | 0.612042 | 4_1:+20437758 | None:intergenic |
| AGACTCACGTTGAGCGAGGA+CGG | 0.613550 | 4_1:+20437942 | None:intergenic |
| GGAGAAGAACATGAAACGCT+CGG | 0.618731 | 4_1:+20437978 | None:intergenic |
| AACAGAATTAGGATCCATAG+AGG | 0.624741 | 4_1:+20436416 | None:intergenic |
| ATCAAACACTAGCACTGCAG+TGG | 0.624776 | 4_1:-20435978 | Msa0539470:CDS |
| TTTAATAAGTCCTTGATACG+AGG | 0.627188 | 4_1:+20436276 | None:intergenic |
| GGAAAGGAAGACAATCAGGA+GGG | 0.630567 | 4_1:-20436036 | Msa0539470:CDS |
| TTGGGAGGAAGGAGAAGATG+TGG | 0.639437 | 4_1:+20438106 | None:intergenic |
| GCTACCCAAGTATCTAGTCA+AGG | 0.639894 | 4_1:-20436180 | Msa0539470:CDS |
| AGGTTTGAAGAGTCTTCCAG+AGG | 0.642486 | 4_1:+20438034 | None:intergenic |
| TTCAAGGTCTGGTCCAATGG+CGG | 0.643389 | 4_1:+20437834 | None:intergenic |
| TCCAGAGGTTGCGATAATGG+CGG | 0.649590 | 4_1:+20438049 | None:intergenic |
| AGGAAAGGAAGACAATCAGG+AGG | 0.653504 | 4_1:-20436037 | Msa0539470:CDS |
| GATTTCATGGAAGGGGCTAG+CGG | 0.654207 | 4_1:-20436231 | Msa0539470:CDS |
| GAATCATTATGAGAGTGGAG+AGG | 0.677587 | 4_1:-20436328 | Msa0539470:CDS |
| ACATTGAGGATGATGATGGA+AGG | 0.681603 | 4_1:-20435778 | Msa0539470:CDS |
| GTAGCTCTAACACCTTGGGT+AGG | 0.683455 | 4_1:+20436198 | None:intergenic |
| GATGAAGATGATGAAAGTGG+AGG | 0.688143 | 4_1:-20436360 | Msa0539470:CDS |
| ACAGAATTAGGATCCATAGA+GGG | 0.689455 | 4_1:+20436417 | None:intergenic |
| GTCGAGACTCACGTTGAGCG+AGG | 0.689803 | 4_1:+20437938 | None:intergenic |
| ATAATGGCGGGAGATGAGGG+GGG | 0.694795 | 4_1:+20438062 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | NNNNNNNNNTCCTAATAACT+AGG | - | chr4_1:20436535-20436554 | Msa0539470:intron | 15.0% |
| !!! | GTTTTTTTTTTAGCAATATA+AGG | - | chr4_1:20436842-20436861 | Msa0539470:intron | 15.0% |
| !! | NNNNNNNNNTCCTAATAACT+AGG | - | chr4_1:20436535-20436554 | Msa0539470:intron | 15.0% |
| !!! | GTTTTTTTTTTAGCAATATA+AGG | - | chr4_1:20436842-20436861 | Msa0539470:intron | 15.0% |
| !! | ACTTATAATTCCTAGTTATT+AGG | + | chr4_1:20436548-20436567 | None:intergenic | 20.0% |
| !! | AAAACTAATTCCTAGTAATT+AGG | + | chr4_1:20436579-20436598 | None:intergenic | 20.0% |
| !! | ACTTTATCAAAACAAACTAA+TGG | + | chr4_1:20436945-20436964 | None:intergenic | 20.0% |
| !!! | GTTTTGATAAAGTTATAAGA+TGG | - | chr4_1:20436952-20436971 | Msa0539470:intron | 20.0% |
| !! | TAAGTATGATTATATGAAGA+AGG | - | chr4_1:20437165-20437184 | Msa0539470:intron | 20.0% |
| !!! | TAAATAATGATAGTGCATTT+TGG | - | chr4_1:20437662-20437681 | Msa0539470:intron | 20.0% |
| !! | ACTTATAATTCCTAGTTATT+AGG | + | chr4_1:20436548-20436567 | None:intergenic | 20.0% |
| !! | AAAACTAATTCCTAGTAATT+AGG | + | chr4_1:20436579-20436598 | None:intergenic | 20.0% |
| !! | ACTTTATCAAAACAAACTAA+TGG | + | chr4_1:20436945-20436964 | None:intergenic | 20.0% |
| !!! | GTTTTGATAAAGTTATAAGA+TGG | - | chr4_1:20436952-20436971 | Msa0539470:intron | 20.0% |
| !! | TAAGTATGATTATATGAAGA+AGG | - | chr4_1:20437165-20437184 | Msa0539470:intron | 20.0% |
| !!! | TAAATAATGATAGTGCATTT+TGG | - | chr4_1:20437662-20437681 | Msa0539470:intron | 20.0% |
| ! | ATAACCCTAAACAACAATAA+GGG | + | chr4_1:20436219-20436238 | None:intergenic | 25.0% |
| !!! | TTTTAGAGTAATAGTCGTTT+TGG | - | chr4_1:20436260-20436279 | Msa0539470:CDS | 25.0% |
| ! | NNNGTAAGTAAGTGTATTGA+AGG | + | chr4_1:20436427-20436446 | None:intergenic | 25.0% |
| !!! | AAGATTCTAAAACATACAAC+CGG | + | chr4_1:20436732-20436751 | None:intergenic | 25.0% |
| ! | GGAATCAAATAACGAAAATA+TGG | - | chr4_1:20436973-20436992 | Msa0539470:intron | 25.0% |
| ! | ATCAAATAACGAAAATATGG+AGG | - | chr4_1:20436976-20436995 | Msa0539470:intron | 25.0% |
| ! | TCAAATAACGAAAATATGGA+GGG | - | chr4_1:20436977-20436996 | Msa0539470:intron | 25.0% |
| !!! | AATCTTTTCATGGTCATTTT+CGG | + | chr4_1:20437023-20437042 | None:intergenic | 25.0% |
| ! | TAATGATAGATTCAAACTCT+TGG | + | chr4_1:20437114-20437133 | None:intergenic | 25.0% |
| ! | AGTTTGAATCTATCATTAAG+CGG | - | chr4_1:20437116-20437135 | Msa0539470:intron | 25.0% |
| ! | ATGATTATATGAAGAAGGAT+TGG | - | chr4_1:20437170-20437189 | Msa0539470:intron | 25.0% |
| !!! | TTGTGGAAATTTTTGAAGTT+TGG | - | chr4_1:20437196-20437215 | Msa0539470:intron | 25.0% |
| ! | AATCACAGTTATTAATAGGA+TGG | - | chr4_1:20438028-20438047 | Msa0539470:CDS | 25.0% |
| ! | ATAACCCTAAACAACAATAA+GGG | + | chr4_1:20436219-20436238 | None:intergenic | 25.0% |
| !!! | TTTTAGAGTAATAGTCGTTT+TGG | - | chr4_1:20436260-20436279 | Msa0539470:CDS | 25.0% |
| ! | NNNGTAAGTAAGTGTATTGA+AGG | + | chr4_1:20436427-20436446 | None:intergenic | 25.0% |
| !!! | AAGATTCTAAAACATACAAC+CGG | + | chr4_1:20436732-20436751 | None:intergenic | 25.0% |
| ! | GGAATCAAATAACGAAAATA+TGG | - | chr4_1:20436973-20436992 | Msa0539470:intron | 25.0% |
| ! | ATCAAATAACGAAAATATGG+AGG | - | chr4_1:20436976-20436995 | Msa0539470:intron | 25.0% |
| ! | TCAAATAACGAAAATATGGA+GGG | - | chr4_1:20436977-20436996 | Msa0539470:intron | 25.0% |
| !!! | AATCTTTTCATGGTCATTTT+CGG | + | chr4_1:20437023-20437042 | None:intergenic | 25.0% |
| ! | TAATGATAGATTCAAACTCT+TGG | + | chr4_1:20437114-20437133 | None:intergenic | 25.0% |
| ! | AGTTTGAATCTATCATTAAG+CGG | - | chr4_1:20437116-20437135 | Msa0539470:intron | 25.0% |
| ! | ATGATTATATGAAGAAGGAT+TGG | - | chr4_1:20437170-20437189 | Msa0539470:intron | 25.0% |
| !!! | TTGTGGAAATTTTTGAAGTT+TGG | - | chr4_1:20437196-20437215 | Msa0539470:intron | 25.0% |
| ! | AATCACAGTTATTAATAGGA+TGG | - | chr4_1:20438028-20438047 | Msa0539470:CDS | 25.0% |
| AAGAATTGCATCTCACTTTA+CGG | - | chr4_1:20436106-20436125 | Msa0539470:intron | 30.0% | |
| CATAACCCTAAACAACAATA+AGG | + | chr4_1:20436220-20436239 | None:intergenic | 30.0% | |
| CACATTTAATTACACATTCG+AGG | + | chr4_1:20436287-20436306 | None:intergenic | 30.0% | |
| GTTGATCAATCCTAATTACT+AGG | - | chr4_1:20436566-20436585 | Msa0539470:intron | 30.0% | |
| ACGTTCCAGTAAATTACAAA+TGG | - | chr4_1:20436602-20436621 | Msa0539470:intron | 30.0% | |
| CGTTCCAGTAAATTACAAAT+GGG | - | chr4_1:20436603-20436622 | Msa0539470:intron | 30.0% | |
| GAAATCGAAACAAAAACGAA+AGG | + | chr4_1:20436700-20436719 | None:intergenic | 30.0% | |
| TTTCGATTTCGTTATCATTC+CGG | - | chr4_1:20436710-20436729 | Msa0539470:intron | 30.0% | |
| !! | TCTAGCTCATTTTGTTGTAT+TGG | - | chr4_1:20436760-20436779 | Msa0539470:intron | 30.0% |
| CAGTGAGAAAAAAACAAAGA+TGG | + | chr4_1:20436820-20436839 | None:intergenic | 30.0% | |
| TTAGCAATATAAGGTGACAT+TGG | - | chr4_1:20436851-20436870 | Msa0539470:intron | 30.0% | |
| CTTGATTAAATGAGATGTAG+AGG | - | chr4_1:20436879-20436898 | Msa0539470:intron | 30.0% | |
| ! | AGCTTTGTATCAAGTTCATT+AGG | - | chr4_1:20437050-20437069 | Msa0539470:intron | 30.0% |
| ATCAAGTTCATTAGGAAGAA+CGG | - | chr4_1:20437058-20437077 | Msa0539470:intron | 30.0% | |
| !!! | TTTTTGAAGTTTGGAGAAAC+TGG | - | chr4_1:20437205-20437224 | Msa0539470:intron | 30.0% |
| ! | TTTCAATATTCCCCTTTTGT+AGG | - | chr4_1:20437369-20437388 | Msa0539470:intron | 30.0% |
| !! | ATTACGAAACTTTTTAGCCT+CGG | + | chr4_1:20437401-20437420 | None:intergenic | 30.0% |
| ACATTTGATTGTGAATGTTG+AGG | - | chr4_1:20437537-20437556 | Msa0539470:intron | 30.0% | |
| GATATGAATCATTATGAGAG+TGG | - | chr4_1:20437586-20437605 | Msa0539470:intron | 30.0% | |
| TTTAATAAGTCCTTGATACG+AGG | + | chr4_1:20437646-20437665 | None:intergenic | 30.0% | |
| !!! | GTTTTTTTGTACCATTTCCT+TGG | + | chr4_1:20437819-20437838 | None:intergenic | 30.0% |
| AGAAAATCATCAAGGAAAAG+AGG | - | chr4_1:20437862-20437881 | Msa0539470:CDS | 30.0% | |
| ATTGAATTCTGATGACAGTT+CGG | - | chr4_1:20437968-20437987 | Msa0539470:CDS | 30.0% | |
| CTGCAATCACAGTTATTAAT+AGG | - | chr4_1:20438024-20438043 | Msa0539470:CDS | 30.0% | |
| CTGAAAACAATCTGGAAAAA+GGG | - | chr4_1:20438054-20438073 | Msa0539470:CDS | 30.0% | |
| ! | GGACATTTTTATGAACATTG+AGG | - | chr4_1:20438127-20438146 | Msa0539470:CDS | 30.0% |
| AAGAATTGCATCTCACTTTA+CGG | - | chr4_1:20436106-20436125 | Msa0539470:intron | 30.0% | |
| CATAACCCTAAACAACAATA+AGG | + | chr4_1:20436220-20436239 | None:intergenic | 30.0% | |
| CACATTTAATTACACATTCG+AGG | + | chr4_1:20436287-20436306 | None:intergenic | 30.0% | |
| GTTGATCAATCCTAATTACT+AGG | - | chr4_1:20436566-20436585 | Msa0539470:intron | 30.0% | |
| ACGTTCCAGTAAATTACAAA+TGG | - | chr4_1:20436602-20436621 | Msa0539470:intron | 30.0% | |
| CGTTCCAGTAAATTACAAAT+GGG | - | chr4_1:20436603-20436622 | Msa0539470:intron | 30.0% | |
| GAAATCGAAACAAAAACGAA+AGG | + | chr4_1:20436700-20436719 | None:intergenic | 30.0% | |
| TTTCGATTTCGTTATCATTC+CGG | - | chr4_1:20436710-20436729 | Msa0539470:intron | 30.0% | |
| !! | TCTAGCTCATTTTGTTGTAT+TGG | - | chr4_1:20436760-20436779 | Msa0539470:intron | 30.0% |
| CAGTGAGAAAAAAACAAAGA+TGG | + | chr4_1:20436820-20436839 | None:intergenic | 30.0% | |
| TTAGCAATATAAGGTGACAT+TGG | - | chr4_1:20436851-20436870 | Msa0539470:intron | 30.0% | |
| CTTGATTAAATGAGATGTAG+AGG | - | chr4_1:20436879-20436898 | Msa0539470:intron | 30.0% | |
| ! | AGCTTTGTATCAAGTTCATT+AGG | - | chr4_1:20437050-20437069 | Msa0539470:intron | 30.0% |
| ATCAAGTTCATTAGGAAGAA+CGG | - | chr4_1:20437058-20437077 | Msa0539470:intron | 30.0% | |
| !!! | TTTTTGAAGTTTGGAGAAAC+TGG | - | chr4_1:20437205-20437224 | Msa0539470:intron | 30.0% |
| ! | TTTCAATATTCCCCTTTTGT+AGG | - | chr4_1:20437369-20437388 | Msa0539470:intron | 30.0% |
| !! | ATTACGAAACTTTTTAGCCT+CGG | + | chr4_1:20437401-20437420 | None:intergenic | 30.0% |
| ACATTTGATTGTGAATGTTG+AGG | - | chr4_1:20437537-20437556 | Msa0539470:intron | 30.0% | |
| GATATGAATCATTATGAGAG+TGG | - | chr4_1:20437586-20437605 | Msa0539470:intron | 30.0% | |
| TTTAATAAGTCCTTGATACG+AGG | + | chr4_1:20437646-20437665 | None:intergenic | 30.0% | |
| !!! | GTTTTTTTGTACCATTTCCT+TGG | + | chr4_1:20437819-20437838 | None:intergenic | 30.0% |
| AGAAAATCATCAAGGAAAAG+AGG | - | chr4_1:20437862-20437881 | Msa0539470:CDS | 30.0% | |
| ATTGAATTCTGATGACAGTT+CGG | - | chr4_1:20437968-20437987 | Msa0539470:CDS | 30.0% | |
| CTGCAATCACAGTTATTAAT+AGG | - | chr4_1:20438024-20438043 | Msa0539470:CDS | 30.0% | |
| CTGAAAACAATCTGGAAAAA+GGG | - | chr4_1:20438054-20438073 | Msa0539470:CDS | 30.0% | |
| ! | GGACATTTTTATGAACATTG+AGG | - | chr4_1:20438127-20438146 | Msa0539470:CDS | 30.0% |
| TAGATTGCTTAGTCTGTCAA+TGG | + | chr4_1:20435776-20435795 | None:intergenic | 35.0% | |
| ACGTATAGAACACGTCTTTA+CGG | + | chr4_1:20436041-20436060 | None:intergenic | 35.0% | |
| ATACGTCTTCGATTGATACA+TGG | - | chr4_1:20436055-20436074 | Msa0539470:CDS | 35.0% | |
| TACGTCTTCGATTGATACAT+GGG | - | chr4_1:20436056-20436075 | Msa0539470:CDS | 35.0% | |
| AAGTGAGATGCAATTCTTCA+AGG | + | chr4_1:20436104-20436123 | None:intergenic | 35.0% | |
| ! | ATAAGGGAAGGAAGTTTTAC+CGG | + | chr4_1:20436203-20436222 | None:intergenic | 35.0% |
| !! | TCCTTCCCTTATTGTTGTTT+AGG | - | chr4_1:20436211-20436230 | Msa0539470:CDS | 35.0% |
| !! | CCTTCCCTTATTGTTGTTTA+GGG | - | chr4_1:20436212-20436231 | Msa0539470:CDS | 35.0% |
| CAGTCCCATTTGTAATTTAC+TGG | + | chr4_1:20436610-20436629 | None:intergenic | 35.0% | |
| !!! | CATTTTGTTGTATTGGCTTC+AGG | - | chr4_1:20436767-20436786 | Msa0539470:intron | 35.0% |
| AATAACGAAAATATGGAGGG+AGG | - | chr4_1:20436980-20436999 | Msa0539470:intron | 35.0% | |
| ! | AGGGAGGAATGACTTTTAAA+TGG | - | chr4_1:20436996-20437015 | Msa0539470:intron | 35.0% |
| ! | GCTCAGCAAAAATCTTTTCA+TGG | + | chr4_1:20437033-20437052 | None:intergenic | 35.0% |
| CCTTCCATCTAAATGATACA+CGG | + | chr4_1:20437084-20437103 | None:intergenic | 35.0% | |
| TATCATTAAGCGGAAATGTG+TGG | - | chr4_1:20437126-20437145 | Msa0539470:intron | 35.0% | |
| CAATTAAGCTTTCCTGTAAG+AGG | + | chr4_1:20437248-20437267 | None:intergenic | 35.0% | |
| AGCTTAATTGTTCAGATGAG+TGG | - | chr4_1:20437258-20437277 | Msa0539470:intron | 35.0% | |
| TTAATTGTTCAGATGAGTGG+TGG | - | chr4_1:20437261-20437280 | Msa0539470:intron | 35.0% | |
| TAATTGTTCAGATGAGTGGT+GGG | - | chr4_1:20437262-20437281 | Msa0539470:intron | 35.0% | |
| !! | TTACGAAACTTTTTAGCCTC+GGG | + | chr4_1:20437400-20437419 | None:intergenic | 35.0% |
| ATCCTTCACTTGAGGAATTA+TGG | - | chr4_1:20437431-20437450 | Msa0539470:intron | 35.0% | |
| TTCCATAATTCCTCAAGTGA+AGG | + | chr4_1:20437436-20437455 | None:intergenic | 35.0% | |
| TTTGAAGACAGTTATGCAGA+TGG | - | chr4_1:20437463-20437482 | Msa0539470:intron | 35.0% | |
| TTGAAGACAGTTATGCAGAT+GGG | - | chr4_1:20437464-20437483 | Msa0539470:intron | 35.0% | |
| ACAGAATTAGGATCCATAGA+GGG | + | chr4_1:20437505-20437524 | None:intergenic | 35.0% | |
| AACAGAATTAGGATCCATAG+AGG | + | chr4_1:20437506-20437525 | None:intergenic | 35.0% | |
| TTCACAATCAAATGTTTCGC+AGG | + | chr4_1:20437532-20437551 | None:intergenic | 35.0% | |
| ATCACCTTGACTAGATACTT+GGG | + | chr4_1:20437746-20437765 | None:intergenic | 35.0% | |
| TTGGTTAACTTCAACATGTC+TGG | + | chr4_1:20437788-20437807 | None:intergenic | 35.0% | |
| AAAAACTGCATTCACTCCAA+AGG | - | chr4_1:20437833-20437852 | Msa0539470:CDS | 35.0% | |
| ! | ATGATTTTCTTAGCCACCTT+TGG | + | chr4_1:20437852-20437871 | None:intergenic | 35.0% |
| ATCATCAAGGAAAAGAGGAA+AGG | - | chr4_1:20437867-20437886 | Msa0539470:CDS | 35.0% | |
| AGTGCTAGTGTTTGATACTA+AGG | + | chr4_1:20437937-20437956 | None:intergenic | 35.0% | |
| TTGAATTCTGATGACAGTTC+GGG | - | chr4_1:20437969-20437988 | Msa0539470:CDS | 35.0% | |
| GCTGAAAACAATCTGGAAAA+AGG | - | chr4_1:20438053-20438072 | Msa0539470:CDS | 35.0% | |
| TGATTGAGAATGAAGTGAGA+CGG | - | chr4_1:20438105-20438124 | Msa0539470:CDS | 35.0% | |
| ATGAACATTGAGGATGATGA+TGG | - | chr4_1:20438137-20438156 | Msa0539470:CDS | 35.0% | |
| !! | ATGATGATGGAAGGAAATCT+TGG | - | chr4_1:20438150-20438169 | Msa0539470:CDS | 35.0% |
| TAGATTGCTTAGTCTGTCAA+TGG | + | chr4_1:20435776-20435795 | None:intergenic | 35.0% | |
| ACGTATAGAACACGTCTTTA+CGG | + | chr4_1:20436041-20436060 | None:intergenic | 35.0% | |
| ATACGTCTTCGATTGATACA+TGG | - | chr4_1:20436055-20436074 | Msa0539470:CDS | 35.0% | |
| TACGTCTTCGATTGATACAT+GGG | - | chr4_1:20436056-20436075 | Msa0539470:CDS | 35.0% | |
| AAGTGAGATGCAATTCTTCA+AGG | + | chr4_1:20436104-20436123 | None:intergenic | 35.0% | |
| ! | ATAAGGGAAGGAAGTTTTAC+CGG | + | chr4_1:20436203-20436222 | None:intergenic | 35.0% |
| !! | TCCTTCCCTTATTGTTGTTT+AGG | - | chr4_1:20436211-20436230 | Msa0539470:CDS | 35.0% |
| !! | CCTTCCCTTATTGTTGTTTA+GGG | - | chr4_1:20436212-20436231 | Msa0539470:CDS | 35.0% |
| CAGTCCCATTTGTAATTTAC+TGG | + | chr4_1:20436610-20436629 | None:intergenic | 35.0% | |
| !!! | CATTTTGTTGTATTGGCTTC+AGG | - | chr4_1:20436767-20436786 | Msa0539470:intron | 35.0% |
| AATAACGAAAATATGGAGGG+AGG | - | chr4_1:20436980-20436999 | Msa0539470:intron | 35.0% | |
| ! | AGGGAGGAATGACTTTTAAA+TGG | - | chr4_1:20436996-20437015 | Msa0539470:intron | 35.0% |
| ! | GCTCAGCAAAAATCTTTTCA+TGG | + | chr4_1:20437033-20437052 | None:intergenic | 35.0% |
| CCTTCCATCTAAATGATACA+CGG | + | chr4_1:20437084-20437103 | None:intergenic | 35.0% | |
| TATCATTAAGCGGAAATGTG+TGG | - | chr4_1:20437126-20437145 | Msa0539470:intron | 35.0% | |
| CAATTAAGCTTTCCTGTAAG+AGG | + | chr4_1:20437248-20437267 | None:intergenic | 35.0% | |
| AGCTTAATTGTTCAGATGAG+TGG | - | chr4_1:20437258-20437277 | Msa0539470:intron | 35.0% | |
| TTAATTGTTCAGATGAGTGG+TGG | - | chr4_1:20437261-20437280 | Msa0539470:intron | 35.0% | |
| TAATTGTTCAGATGAGTGGT+GGG | - | chr4_1:20437262-20437281 | Msa0539470:intron | 35.0% | |
| !! | TTACGAAACTTTTTAGCCTC+GGG | + | chr4_1:20437400-20437419 | None:intergenic | 35.0% |
| ATCCTTCACTTGAGGAATTA+TGG | - | chr4_1:20437431-20437450 | Msa0539470:intron | 35.0% | |
| TTCCATAATTCCTCAAGTGA+AGG | + | chr4_1:20437436-20437455 | None:intergenic | 35.0% | |
| TTTGAAGACAGTTATGCAGA+TGG | - | chr4_1:20437463-20437482 | Msa0539470:intron | 35.0% | |
| TTGAAGACAGTTATGCAGAT+GGG | - | chr4_1:20437464-20437483 | Msa0539470:intron | 35.0% | |
| ACAGAATTAGGATCCATAGA+GGG | + | chr4_1:20437505-20437524 | None:intergenic | 35.0% | |
| AACAGAATTAGGATCCATAG+AGG | + | chr4_1:20437506-20437525 | None:intergenic | 35.0% | |
| TTCACAATCAAATGTTTCGC+AGG | + | chr4_1:20437532-20437551 | None:intergenic | 35.0% | |
| ATCACCTTGACTAGATACTT+GGG | + | chr4_1:20437746-20437765 | None:intergenic | 35.0% | |
| TTGGTTAACTTCAACATGTC+TGG | + | chr4_1:20437788-20437807 | None:intergenic | 35.0% | |
| AAAAACTGCATTCACTCCAA+AGG | - | chr4_1:20437833-20437852 | Msa0539470:CDS | 35.0% | |
| ! | ATGATTTTCTTAGCCACCTT+TGG | + | chr4_1:20437852-20437871 | None:intergenic | 35.0% |
| ATCATCAAGGAAAAGAGGAA+AGG | - | chr4_1:20437867-20437886 | Msa0539470:CDS | 35.0% | |
| AGTGCTAGTGTTTGATACTA+AGG | + | chr4_1:20437937-20437956 | None:intergenic | 35.0% | |
| TTGAATTCTGATGACAGTTC+GGG | - | chr4_1:20437969-20437988 | Msa0539470:CDS | 35.0% | |
| GCTGAAAACAATCTGGAAAA+AGG | - | chr4_1:20438053-20438072 | Msa0539470:CDS | 35.0% | |
| TGATTGAGAATGAAGTGAGA+CGG | - | chr4_1:20438105-20438124 | Msa0539470:CDS | 35.0% | |
| ATGAACATTGAGGATGATGA+TGG | - | chr4_1:20438137-20438156 | Msa0539470:CDS | 35.0% | |
| !! | ATGATGATGGAAGGAAATCT+TGG | - | chr4_1:20438150-20438169 | Msa0539470:CDS | 35.0% |
| !!! | TTTGGATGGTGGTTTTGGTT+GGG | + | chr4_1:20435834-20435853 | None:intergenic | 40.0% |
| CTTCAAACCTTCGATTTCGA+CGG | - | chr4_1:20435898-20435917 | Msa0539470:CDS | 40.0% | |
| AGAACACGTCTTTACGGAAA+TGG | + | chr4_1:20436035-20436054 | None:intergenic | 40.0% | |
| AGATGCAATTCTTCAAGGTC+TGG | + | chr4_1:20436099-20436118 | None:intergenic | 40.0% | |
| CCCTAAACAACAATAAGGGA+AGG | + | chr4_1:20436215-20436234 | None:intergenic | 40.0% | |
| ! | CTCTTTTCCTCTGTAATTGC+TGG | - | chr4_1:20436671-20436690 | Msa0539470:CDS | 40.0% |
| ! | GCTTCAGGCATTTTTGTATC+AGG | - | chr4_1:20436782-20436801 | Msa0539470:intron | 40.0% |
| CCGTGTATCATTTAGATGGA+AGG | - | chr4_1:20437081-20437100 | Msa0539470:intron | 40.0% | |
| ! | AAGTTTGGAGAAACTGGCTT+AGG | - | chr4_1:20437211-20437230 | Msa0539470:intron | 40.0% |
| ! | GTGGTGGGATAGAAAGATTA+AGG | - | chr4_1:20437277-20437296 | Msa0539470:intron | 40.0% |
| GTCAATAGATCCTTCACTTG+AGG | - | chr4_1:20437423-20437442 | Msa0539470:intron | 40.0% | |
| GAGGATGAAGATGATGAAAG+TGG | - | chr4_1:20437556-20437575 | Msa0539470:intron | 40.0% | |
| GATGAAGATGATGAAAGTGG+AGG | - | chr4_1:20437559-20437578 | Msa0539470:intron | 40.0% | |
| GAATCATTATGAGAGTGGAG+AGG | - | chr4_1:20437591-20437610 | Msa0539470:intron | 40.0% | |
| TCGATATGATCCTCGTATCA+AGG | - | chr4_1:20437633-20437652 | Msa0539470:intron | 40.0% | |
| !! | TGCATTTTGGCCTGATTTCA+TGG | - | chr4_1:20437675-20437694 | Msa0539470:intron | 40.0% |
| ! | TTTTGGCCTGATTTCATGGA+AGG | - | chr4_1:20437679-20437698 | Msa0539470:intron | 40.0% |
| TTTGGCCTGATTTCATGGAA+GGG | - | chr4_1:20437680-20437699 | Msa0539470:intron | 40.0% | |
| CATCACCTTGACTAGATACT+TGG | + | chr4_1:20437747-20437766 | None:intergenic | 40.0% | |
| TTAACTTCAACATGTCTGGC+AGG | + | chr4_1:20437784-20437803 | None:intergenic | 40.0% | |
| TTTGTACCATTTCCTTGGCT+AGG | + | chr4_1:20437814-20437833 | None:intergenic | 40.0% | |
| GGTGGCTAAGAAAATCATCA+AGG | - | chr4_1:20437854-20437873 | Msa0539470:CDS | 40.0% | |
| AAGAGGAAAGGAAGACAATC+AGG | - | chr4_1:20437879-20437898 | Msa0539470:CDS | 40.0% | |
| GATGGTTGCTGAAAACAATC+TGG | - | chr4_1:20438046-20438065 | Msa0539470:CDS | 40.0% | |
| GATTGAGAATGAAGTGAGAC+GGG | - | chr4_1:20438106-20438125 | Msa0539470:CDS | 40.0% | |
| !! | ACATTGAGGATGATGATGGA+AGG | - | chr4_1:20438141-20438160 | Msa0539470:CDS | 40.0% |
| !!! | TTTGGATGGTGGTTTTGGTT+GGG | + | chr4_1:20435834-20435853 | None:intergenic | 40.0% |
| CTTCAAACCTTCGATTTCGA+CGG | - | chr4_1:20435898-20435917 | Msa0539470:CDS | 40.0% | |
| AGAACACGTCTTTACGGAAA+TGG | + | chr4_1:20436035-20436054 | None:intergenic | 40.0% | |
| AGATGCAATTCTTCAAGGTC+TGG | + | chr4_1:20436099-20436118 | None:intergenic | 40.0% | |
| CCCTAAACAACAATAAGGGA+AGG | + | chr4_1:20436215-20436234 | None:intergenic | 40.0% | |
| ! | CTCTTTTCCTCTGTAATTGC+TGG | - | chr4_1:20436671-20436690 | Msa0539470:CDS | 40.0% |
| ! | GCTTCAGGCATTTTTGTATC+AGG | - | chr4_1:20436782-20436801 | Msa0539470:intron | 40.0% |
| CCGTGTATCATTTAGATGGA+AGG | - | chr4_1:20437081-20437100 | Msa0539470:intron | 40.0% | |
| ! | AAGTTTGGAGAAACTGGCTT+AGG | - | chr4_1:20437211-20437230 | Msa0539470:intron | 40.0% |
| ! | GTGGTGGGATAGAAAGATTA+AGG | - | chr4_1:20437277-20437296 | Msa0539470:intron | 40.0% |
| GTCAATAGATCCTTCACTTG+AGG | - | chr4_1:20437423-20437442 | Msa0539470:intron | 40.0% | |
| GAGGATGAAGATGATGAAAG+TGG | - | chr4_1:20437556-20437575 | Msa0539470:intron | 40.0% | |
| GATGAAGATGATGAAAGTGG+AGG | - | chr4_1:20437559-20437578 | Msa0539470:intron | 40.0% | |
| GAATCATTATGAGAGTGGAG+AGG | - | chr4_1:20437591-20437610 | Msa0539470:intron | 40.0% | |
| TCGATATGATCCTCGTATCA+AGG | - | chr4_1:20437633-20437652 | Msa0539470:intron | 40.0% | |
| !! | TGCATTTTGGCCTGATTTCA+TGG | - | chr4_1:20437675-20437694 | Msa0539470:intron | 40.0% |
| ! | TTTTGGCCTGATTTCATGGA+AGG | - | chr4_1:20437679-20437698 | Msa0539470:intron | 40.0% |
| TTTGGCCTGATTTCATGGAA+GGG | - | chr4_1:20437680-20437699 | Msa0539470:intron | 40.0% | |
| CATCACCTTGACTAGATACT+TGG | + | chr4_1:20437747-20437766 | None:intergenic | 40.0% | |
| TTAACTTCAACATGTCTGGC+AGG | + | chr4_1:20437784-20437803 | None:intergenic | 40.0% | |
| TTTGTACCATTTCCTTGGCT+AGG | + | chr4_1:20437814-20437833 | None:intergenic | 40.0% | |
| GGTGGCTAAGAAAATCATCA+AGG | - | chr4_1:20437854-20437873 | Msa0539470:CDS | 40.0% | |
| AAGAGGAAAGGAAGACAATC+AGG | - | chr4_1:20437879-20437898 | Msa0539470:CDS | 40.0% | |
| GATGGTTGCTGAAAACAATC+TGG | - | chr4_1:20438046-20438065 | Msa0539470:CDS | 40.0% | |
| GATTGAGAATGAAGTGAGAC+GGG | - | chr4_1:20438106-20438125 | Msa0539470:CDS | 40.0% | |
| !! | ACATTGAGGATGATGATGGA+AGG | - | chr4_1:20438141-20438160 | Msa0539470:CDS | 40.0% |
| !!! | GTTTGGATGGTGGTTTTGGT+TGG | + | chr4_1:20435835-20435854 | None:intergenic | 45.0% |
| !! | GGTTGTTTGGATGGTGGTTT+TGG | + | chr4_1:20435839-20435858 | None:intergenic | 45.0% |
| TCTTCCAGAGGTTGCGATAA+TGG | + | chr4_1:20435876-20435895 | None:intergenic | 45.0% | |
| AGGTTTGAAGAGTCTTCCAG+AGG | + | chr4_1:20435888-20435907 | None:intergenic | 45.0% | |
| GGAGAAGAACATGAAACGCT+CGG | + | chr4_1:20435944-20435963 | None:intergenic | 45.0% | |
| TTCTTCAAGGTCTGGTCCAA+TGG | + | chr4_1:20436091-20436110 | None:intergenic | 45.0% | |
| ! | AGTTTTACCGGAGAAAGACC+AGG | + | chr4_1:20436191-20436210 | None:intergenic | 45.0% |
| AAGGACTCCAGCAATTACAG+AGG | + | chr4_1:20436681-20436700 | None:intergenic | 45.0% | |
| ACGGCCGTGTATCATTTAGA+TGG | - | chr4_1:20437077-20437096 | Msa0539470:intron | 45.0% | |
| ! | TGAAGAAGGATTGGCGATTG+TGG | - | chr4_1:20437179-20437198 | Msa0539470:intron | 45.0% |
| ! | AGAAACTGGCTTAGGATGCA+TGG | - | chr4_1:20437219-20437238 | Msa0539470:intron | 45.0% |
| ! | GAAACTGGCTTAGGATGCAT+GGG | - | chr4_1:20437220-20437239 | Msa0539470:intron | 45.0% |
| TCGGGTTTCTCCTACAAAAG+GGG | + | chr4_1:20437382-20437401 | None:intergenic | 45.0% | |
| CTCGGGTTTCTCCTACAAAA+GGG | + | chr4_1:20437383-20437402 | None:intergenic | 45.0% | |
| TTCGCAGGTCGAACAGAATT+AGG | + | chr4_1:20437517-20437536 | None:intergenic | 45.0% | |
| TTGGCCTGATTTCATGGAAG+GGG | - | chr4_1:20437681-20437700 | Msa0539470:intron | 45.0% | |
| !! | TTGGGTAGCTCTAACACCTT+GGG | + | chr4_1:20437728-20437747 | None:intergenic | 45.0% |
| GCTACCCAAGTATCTAGTCA+AGG | - | chr4_1:20437739-20437758 | Msa0539470:intron | 45.0% | |
| AACATGTCTGGCAGGTACTT+GGG | + | chr4_1:20437776-20437795 | None:intergenic | 45.0% | |
| GTTAACCAAGTACCTAGCCA+AGG | - | chr4_1:20437799-20437818 | Msa0539470:CDS | 45.0% | |
| CATTTCCTTGGCTAGGTACT+TGG | + | chr4_1:20437807-20437826 | None:intergenic | 45.0% | |
| CAAGTACCTAGCCAAGGAAA+TGG | - | chr4_1:20437805-20437824 | Msa0539470:CDS | 45.0% | |
| AACTGCATTCACTCCAAAGG+TGG | - | chr4_1:20437836-20437855 | Msa0539470:CDS | 45.0% | |
| AGGAAAGGAAGACAATCAGG+AGG | - | chr4_1:20437882-20437901 | Msa0539470:CDS | 45.0% | |
| GGAAAGGAAGACAATCAGGA+GGG | - | chr4_1:20437883-20437902 | Msa0539470:CDS | 45.0% | |
| GAAAGGAAGACAATCAGGAG+GGG | - | chr4_1:20437884-20437903 | Msa0539470:CDS | 45.0% | |
| ATCAAACACTAGCACTGCAG+TGG | - | chr4_1:20437941-20437960 | Msa0539470:CDS | 45.0% | |
| !! | TGGAAAAAGGGAGTGCTTTG+TGG | - | chr4_1:20438066-20438085 | Msa0539470:CDS | 45.0% |
| !!! | GTTTGGATGGTGGTTTTGGT+TGG | + | chr4_1:20435835-20435854 | None:intergenic | 45.0% |
| !! | GGTTGTTTGGATGGTGGTTT+TGG | + | chr4_1:20435839-20435858 | None:intergenic | 45.0% |
| TCTTCCAGAGGTTGCGATAA+TGG | + | chr4_1:20435876-20435895 | None:intergenic | 45.0% | |
| AGGTTTGAAGAGTCTTCCAG+AGG | + | chr4_1:20435888-20435907 | None:intergenic | 45.0% | |
| GGAGAAGAACATGAAACGCT+CGG | + | chr4_1:20435944-20435963 | None:intergenic | 45.0% | |
| TTCTTCAAGGTCTGGTCCAA+TGG | + | chr4_1:20436091-20436110 | None:intergenic | 45.0% | |
| ! | AGTTTTACCGGAGAAAGACC+AGG | + | chr4_1:20436191-20436210 | None:intergenic | 45.0% |
| AAGGACTCCAGCAATTACAG+AGG | + | chr4_1:20436681-20436700 | None:intergenic | 45.0% | |
| ACGGCCGTGTATCATTTAGA+TGG | - | chr4_1:20437077-20437096 | Msa0539470:intron | 45.0% | |
| ! | TGAAGAAGGATTGGCGATTG+TGG | - | chr4_1:20437179-20437198 | Msa0539470:intron | 45.0% |
| ! | AGAAACTGGCTTAGGATGCA+TGG | - | chr4_1:20437219-20437238 | Msa0539470:intron | 45.0% |
| ! | GAAACTGGCTTAGGATGCAT+GGG | - | chr4_1:20437220-20437239 | Msa0539470:intron | 45.0% |
| TCGGGTTTCTCCTACAAAAG+GGG | + | chr4_1:20437382-20437401 | None:intergenic | 45.0% | |
| CTCGGGTTTCTCCTACAAAA+GGG | + | chr4_1:20437383-20437402 | None:intergenic | 45.0% | |
| TTCGCAGGTCGAACAGAATT+AGG | + | chr4_1:20437517-20437536 | None:intergenic | 45.0% | |
| TTGGCCTGATTTCATGGAAG+GGG | - | chr4_1:20437681-20437700 | Msa0539470:intron | 45.0% | |
| !! | TTGGGTAGCTCTAACACCTT+GGG | + | chr4_1:20437728-20437747 | None:intergenic | 45.0% |
| GCTACCCAAGTATCTAGTCA+AGG | - | chr4_1:20437739-20437758 | Msa0539470:intron | 45.0% | |
| AACATGTCTGGCAGGTACTT+GGG | + | chr4_1:20437776-20437795 | None:intergenic | 45.0% | |
| GTTAACCAAGTACCTAGCCA+AGG | - | chr4_1:20437799-20437818 | Msa0539470:CDS | 45.0% | |
| CATTTCCTTGGCTAGGTACT+TGG | + | chr4_1:20437807-20437826 | None:intergenic | 45.0% | |
| CAAGTACCTAGCCAAGGAAA+TGG | - | chr4_1:20437805-20437824 | Msa0539470:CDS | 45.0% | |
| AACTGCATTCACTCCAAAGG+TGG | - | chr4_1:20437836-20437855 | Msa0539470:CDS | 45.0% | |
| AGGAAAGGAAGACAATCAGG+AGG | - | chr4_1:20437882-20437901 | Msa0539470:CDS | 45.0% | |
| GGAAAGGAAGACAATCAGGA+GGG | - | chr4_1:20437883-20437902 | Msa0539470:CDS | 45.0% | |
| GAAAGGAAGACAATCAGGAG+GGG | - | chr4_1:20437884-20437903 | Msa0539470:CDS | 45.0% | |
| ATCAAACACTAGCACTGCAG+TGG | - | chr4_1:20437941-20437960 | Msa0539470:CDS | 45.0% | |
| !! | TGGAAAAAGGGAGTGCTTTG+TGG | - | chr4_1:20438066-20438085 | Msa0539470:CDS | 45.0% |
| TTGGGAGGAAGGAGAAGATG+TGG | + | chr4_1:20435816-20435835 | None:intergenic | 50.0% | |
| ! | TCCAGAGGTTGCGATAATGG+CGG | + | chr4_1:20435873-20435892 | None:intergenic | 50.0% |
| TTCAAGGTCTGGTCCAATGG+CGG | + | chr4_1:20436088-20436107 | None:intergenic | 50.0% | |
| ACTCCTCACTTGCTCTAACC+TGG | - | chr4_1:20436170-20436189 | Msa0539470:CDS | 50.0% | |
| AGACCAGGTTAGAGCAAGTG+AGG | + | chr4_1:20436176-20436195 | None:intergenic | 50.0% | |
| ! | GCTCTAACCTGGTCTTTCTC+CGG | - | chr4_1:20436181-20436200 | Msa0539470:CDS | 50.0% |
| GATGCATGGGATCCTCTTAC+AGG | - | chr4_1:20437233-20437252 | Msa0539470:intron | 50.0% | |
| CCTCGGGTTTCTCCTACAAA+AGG | + | chr4_1:20437384-20437403 | None:intergenic | 50.0% | |
| ! | CCTTTTGTAGGAGAAACCCG+AGG | - | chr4_1:20437381-20437400 | Msa0539470:intron | 50.0% |
| TGCAGATGGGACAGAGAATG+TGG | - | chr4_1:20437477-20437496 | Msa0539470:intron | 50.0% | |
| AGAGAATGTGGCACCCTCTA+TGG | - | chr4_1:20437489-20437508 | Msa0539470:intron | 50.0% | |
| CTAGCCCCTTCCATGAAATC+AGG | + | chr4_1:20437688-20437707 | None:intergenic | 50.0% | |
| GATTTCATGGAAGGGGCTAG+CGG | - | chr4_1:20437688-20437707 | Msa0539470:intron | 50.0% | |
| TAACACCTTGGGTAGGCACT+TGG | + | chr4_1:20437717-20437736 | None:intergenic | 50.0% | |
| !! | GTAGCTCTAACACCTTGGGT+AGG | + | chr4_1:20437724-20437743 | None:intergenic | 50.0% |
| !! | CTTGGGTAGCTCTAACACCT+TGG | + | chr4_1:20437729-20437748 | None:intergenic | 50.0% |
| CAACATGTCTGGCAGGTACT+TGG | + | chr4_1:20437777-20437796 | None:intergenic | 50.0% | |
| TTGGGAGGAAGGAGAAGATG+TGG | + | chr4_1:20435816-20435835 | None:intergenic | 50.0% | |
| ! | TCCAGAGGTTGCGATAATGG+CGG | + | chr4_1:20435873-20435892 | None:intergenic | 50.0% |
| TTCAAGGTCTGGTCCAATGG+CGG | + | chr4_1:20436088-20436107 | None:intergenic | 50.0% | |
| ACTCCTCACTTGCTCTAACC+TGG | - | chr4_1:20436170-20436189 | Msa0539470:CDS | 50.0% | |
| AGACCAGGTTAGAGCAAGTG+AGG | + | chr4_1:20436176-20436195 | None:intergenic | 50.0% | |
| ! | GCTCTAACCTGGTCTTTCTC+CGG | - | chr4_1:20436181-20436200 | Msa0539470:CDS | 50.0% |
| GATGCATGGGATCCTCTTAC+AGG | - | chr4_1:20437233-20437252 | Msa0539470:intron | 50.0% | |
| CCTCGGGTTTCTCCTACAAA+AGG | + | chr4_1:20437384-20437403 | None:intergenic | 50.0% | |
| ! | CCTTTTGTAGGAGAAACCCG+AGG | - | chr4_1:20437381-20437400 | Msa0539470:intron | 50.0% |
| TGCAGATGGGACAGAGAATG+TGG | - | chr4_1:20437477-20437496 | Msa0539470:intron | 50.0% | |
| AGAGAATGTGGCACCCTCTA+TGG | - | chr4_1:20437489-20437508 | Msa0539470:intron | 50.0% | |
| CTAGCCCCTTCCATGAAATC+AGG | + | chr4_1:20437688-20437707 | None:intergenic | 50.0% | |
| GATTTCATGGAAGGGGCTAG+CGG | - | chr4_1:20437688-20437707 | Msa0539470:intron | 50.0% | |
| TAACACCTTGGGTAGGCACT+TGG | + | chr4_1:20437717-20437736 | None:intergenic | 50.0% | |
| !! | GTAGCTCTAACACCTTGGGT+AGG | + | chr4_1:20437724-20437743 | None:intergenic | 50.0% |
| !! | CTTGGGTAGCTCTAACACCT+TGG | + | chr4_1:20437729-20437748 | None:intergenic | 50.0% |
| CAACATGTCTGGCAGGTACT+TGG | + | chr4_1:20437777-20437796 | None:intergenic | 50.0% | |
| ! | ATGTGGCGGAGTATGGAGTC+TGG | + | chr4_1:20435799-20435818 | None:intergenic | 55.0% |
| ! | GGAGAAGATGTGGCGGAGTA+TGG | + | chr4_1:20435806-20435825 | None:intergenic | 55.0% |
| GGAGGAAGGAGAAGATGTGG+CGG | + | chr4_1:20435813-20435832 | None:intergenic | 55.0% | |
| !!! | GGTGGTTTTGGTTGGGAGGA+AGG | + | chr4_1:20435827-20435846 | None:intergenic | 55.0% |
| !!! | GGATGGTGGTTTTGGTTGGG+AGG | + | chr4_1:20435831-20435850 | None:intergenic | 55.0% |
| GATGAGGGGGGTTGTTTGGA+TGG | + | chr4_1:20435848-20435867 | None:intergenic | 55.0% | |
| ! | ATAATGGCGGGAGATGAGGG+GGG | + | chr4_1:20435860-20435879 | None:intergenic | 55.0% |
| ! | GATAATGGCGGGAGATGAGG+GGG | + | chr4_1:20435861-20435880 | None:intergenic | 55.0% |
| ! | CGATAATGGCGGGAGATGAG+GGG | + | chr4_1:20435862-20435881 | None:intergenic | 55.0% |
| ! | GCGATAATGGCGGGAGATGA+GGG | + | chr4_1:20435863-20435882 | None:intergenic | 55.0% |
| ! | TGCGATAATGGCGGGAGATG+AGG | + | chr4_1:20435864-20435883 | None:intergenic | 55.0% |
| ! | CCAGAGGTTGCGATAATGGC+GGG | + | chr4_1:20435872-20435891 | None:intergenic | 55.0% |
| !! | GGATTGGCCGTCGAAATCGA+AGG | + | chr4_1:20435908-20435927 | None:intergenic | 55.0% |
| CGGTGTGCTTGTCTTCGGAT+TGG | + | chr4_1:20435924-20435943 | None:intergenic | 55.0% | |
| !! | ACGCTCGGTGTGCTTGTCTT+CGG | + | chr4_1:20435929-20435948 | None:intergenic | 55.0% |
| !! | GAGGACGGTGTTGACGAAGA+TGG | + | chr4_1:20435965-20435984 | None:intergenic | 55.0% |
| AGACTCACGTTGAGCGAGGA+CGG | + | chr4_1:20435980-20435999 | None:intergenic | 55.0% | |
| ACATGGGTACGTACCGCCAT+TGG | - | chr4_1:20436072-20436091 | Msa0539470:intron | 55.0% | |
| ! | AGCAAGTGAGGAGTGCGAGT+GGG | + | chr4_1:20436164-20436183 | None:intergenic | 55.0% |
| ! | ATGTGGCGGAGTATGGAGTC+TGG | + | chr4_1:20435799-20435818 | None:intergenic | 55.0% |
| ! | GGAGAAGATGTGGCGGAGTA+TGG | + | chr4_1:20435806-20435825 | None:intergenic | 55.0% |
| GGAGGAAGGAGAAGATGTGG+CGG | + | chr4_1:20435813-20435832 | None:intergenic | 55.0% | |
| !!! | GGTGGTTTTGGTTGGGAGGA+AGG | + | chr4_1:20435827-20435846 | None:intergenic | 55.0% |
| !!! | GGATGGTGGTTTTGGTTGGG+AGG | + | chr4_1:20435831-20435850 | None:intergenic | 55.0% |
| GATGAGGGGGGTTGTTTGGA+TGG | + | chr4_1:20435848-20435867 | None:intergenic | 55.0% | |
| ! | ATAATGGCGGGAGATGAGGG+GGG | + | chr4_1:20435860-20435879 | None:intergenic | 55.0% |
| ! | GATAATGGCGGGAGATGAGG+GGG | + | chr4_1:20435861-20435880 | None:intergenic | 55.0% |
| ! | CGATAATGGCGGGAGATGAG+GGG | + | chr4_1:20435862-20435881 | None:intergenic | 55.0% |
| ! | GCGATAATGGCGGGAGATGA+GGG | + | chr4_1:20435863-20435882 | None:intergenic | 55.0% |
| ! | TGCGATAATGGCGGGAGATG+AGG | + | chr4_1:20435864-20435883 | None:intergenic | 55.0% |
| ! | CCAGAGGTTGCGATAATGGC+GGG | + | chr4_1:20435872-20435891 | None:intergenic | 55.0% |
| !! | GGATTGGCCGTCGAAATCGA+AGG | + | chr4_1:20435908-20435927 | None:intergenic | 55.0% |
| CGGTGTGCTTGTCTTCGGAT+TGG | + | chr4_1:20435924-20435943 | None:intergenic | 55.0% | |
| !! | ACGCTCGGTGTGCTTGTCTT+CGG | + | chr4_1:20435929-20435948 | None:intergenic | 55.0% |
| !! | GAGGACGGTGTTGACGAAGA+TGG | + | chr4_1:20435965-20435984 | None:intergenic | 55.0% |
| AGACTCACGTTGAGCGAGGA+CGG | + | chr4_1:20435980-20435999 | None:intergenic | 55.0% | |
| ACATGGGTACGTACCGCCAT+TGG | - | chr4_1:20436072-20436091 | Msa0539470:intron | 55.0% | |
| ! | AGCAAGTGAGGAGTGCGAGT+GGG | + | chr4_1:20436164-20436183 | None:intergenic | 55.0% |
| GAGGGGGGTTGTTTGGATGG+TGG | + | chr4_1:20435845-20435864 | None:intergenic | 60.0% | |
| GGGAGATGAGGGGGGTTGTT+TGG | + | chr4_1:20435852-20435871 | None:intergenic | 60.0% | |
| CCCGCCATTATCGCAACCTC+TGG | - | chr4_1:20435869-20435888 | Msa0539470:CDS | 60.0% | |
| GTCGAGACTCACGTTGAGCG+AGG | + | chr4_1:20435984-20436003 | None:intergenic | 60.0% | |
| ! | AAGTGAGGAGTGCGAGTGGG+AGG | + | chr4_1:20436161-20436180 | None:intergenic | 60.0% |
| ! | GAGCAAGTGAGGAGTGCGAG+TGG | + | chr4_1:20436165-20436184 | None:intergenic | 60.0% |
| GAGGGGGGTTGTTTGGATGG+TGG | + | chr4_1:20435845-20435864 | None:intergenic | 60.0% | |
| GGGAGATGAGGGGGGTTGTT+TGG | + | chr4_1:20435852-20435871 | None:intergenic | 60.0% | |
| CCCGCCATTATCGCAACCTC+TGG | - | chr4_1:20435869-20435888 | Msa0539470:CDS | 60.0% | |
| GTCGAGACTCACGTTGAGCG+AGG | + | chr4_1:20435984-20436003 | None:intergenic | 60.0% | |
| ! | AAGTGAGGAGTGCGAGTGGG+AGG | + | chr4_1:20436161-20436180 | None:intergenic | 60.0% |
| ! | GAGCAAGTGAGGAGTGCGAG+TGG | + | chr4_1:20436165-20436184 | None:intergenic | 60.0% |
| GGCAGCCAAGTGCCTACCCA+AGG | - | chr4_1:20437709-20437728 | Msa0539470:intron | 65.0% | |
| GGCAGCCAAGTGCCTACCCA+AGG | - | chr4_1:20437709-20437728 | Msa0539470:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 20435745 | 20438196 | 20435745 | ID=Msa0539470;Name=Msa0539470 |
| chr4_1 | mRNA | 20435745 | 20438196 | 20435745 | ID=Msa0539470-mRNA-1;Parent=Msa0539470;Name=Msa0539470-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|1|1|4|0|413 |
| chr4_1 | exon | 20437750 | 20438196 | 20437750 | ID=Msa0539470-mRNA-1:exon:5866;Parent=Msa0539470-mRNA-1 |
| chr4_1 | exon | 20436643 | 20436708 | 20436643 | ID=Msa0539470-mRNA-1:exon:5865;Parent=Msa0539470-mRNA-1 |
| chr4_1 | exon | 20436164 | 20436550 | 20436164 | ID=Msa0539470-mRNA-1:exon:5864;Parent=Msa0539470-mRNA-1 |
| chr4_1 | exon | 20435745 | 20436086 | 20435745 | ID=Msa0539470-mRNA-1:exon:5863;Parent=Msa0539470-mRNA-1 |
| chr4_1 | CDS | 20437750 | 20438196 | 20437750 | ID=Msa0539470-mRNA-1:cds;Parent=Msa0539470-mRNA-1 |
| chr4_1 | CDS | 20436643 | 20436708 | 20436643 | ID=Msa0539470-mRNA-1:cds;Parent=Msa0539470-mRNA-1 |
| chr4_1 | CDS | 20436164 | 20436550 | 20436164 | ID=Msa0539470-mRNA-1:cds;Parent=Msa0539470-mRNA-1 |
| chr4_1 | CDS | 20435745 | 20436086 | 20435745 | ID=Msa0539470-mRNA-1:cds;Parent=Msa0539470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
