Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603580 | AES92348.2 | 85.792 | 366 | 15 | 2 | 1 | 350 | 1 | 345 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0603580 | Msa1226510 | 0.800630 | 1.316734e-48 | -8.615850e-47 |
| Msa0539470 | Msa0603580 | 0.918223 | 2.029652e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603580 | MtrunA17_Chr7g0267191 | 83.843 | 229 | 10 | 2 | 148 | 350 | 1 | 228 | 1.14e-134 | 382 |
| Msa0603580 | MtrunA17_Chr4g0007281 | 45.455 | 220 | 100 | 4 | 148 | 349 | 1 | 218 | 3.56e-52 | 172 |
| Msa0603580 | MtrunA17_Chr8g0334551 | 32.759 | 174 | 93 | 8 | 16 | 183 | 25 | 180 | 1.88e-15 | 76.3 |
| Msa0603580 | MtrunA17_Chr2g0285481 | 30.723 | 166 | 106 | 5 | 16 | 174 | 26 | 189 | 3.37e-14 | 72.4 |
| Msa0603580 | MtrunA17_Chr1g0172741 | 30.723 | 166 | 106 | 5 | 16 | 174 | 26 | 189 | 3.63e-14 | 72.4 |
| Msa0603580 | MtrunA17_Chr8g0362511 | 26.203 | 187 | 120 | 5 | 16 | 190 | 71 | 251 | 1.23e-13 | 71.2 |
| Msa0603580 | MtrunA17_Chr5g0402821 | 25.893 | 336 | 197 | 14 | 23 | 346 | 25 | 320 | 5.11e-13 | 68.9 |
| Msa0603580 | MtrunA17_Chr2g0321391 | 37.615 | 109 | 58 | 4 | 66 | 174 | 3 | 101 | 2.84e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 75 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTTCACTTGAGGAATTA+TGG | 0.223714 | 4_2:-48163161 | Msa0603580:CDS |
| TAAATAATGATAGTGCATTT+TGG | 0.230389 | 4_2:-48162930 | Msa0603580:CDS |
| GCTGAAAACAATCTGGAAAA+AGG | 0.256549 | 4_2:-48162537 | Msa0603580:CDS |
| TTCGCAGGTCGAACAGAATT+AGG | 0.307499 | 4_2:+48163078 | None:intergenic |
| CTGCAATCACAGTTATTAAT+AGG | 0.315474 | 4_2:-48162566 | Msa0603580:CDS |
| GGAATCAAATAACGAAAATA+TGG | 0.331361 | 4_2:-48163615 | Msa0603580:CDS |
| TTAGGATGGGATCCTCTTAC+AGG | 0.335077 | 4_2:-48163359 | Msa0603580:CDS |
| CATCACCTTGACTAGATACT+TGG | 0.335090 | 4_2:+48162848 | None:intergenic |
| AGAGAATGTGGCACCCTCTA+TGG | 0.352571 | 4_2:-48163103 | Msa0603580:CDS |
| CAATTAAGCTTTCCTGTAAG+AGG | 0.385065 | 4_2:+48163347 | None:intergenic |
| AAGAGGAAAGGAAGACAATC+AGG | 0.404151 | 4_2:-48162711 | Msa0603580:CDS |
| TTGAATTCTGATGACAGTTC+GGG | 0.410374 | 4_2:-48162621 | Msa0603580:CDS |
| CTAGCCCCTTCCATGAAATC+AGG | 0.412393 | 4_2:+48162907 | None:intergenic |
| AGCTTTGTATCAAGTTCATT+AGG | 0.424867 | 4_2:-48163538 | Msa0603580:CDS |
| ATTGAATTCTGATGACAGTT+CGG | 0.428887 | 4_2:-48162622 | Msa0603580:CDS |
| TAATGATAGATTCAAACTCT+TGG | 0.444153 | 4_2:+48163477 | None:intergenic |
| TGAAGAAGGATTGGCGATTG+TGG | 0.455847 | 4_2:-48163409 | Msa0603580:CDS |
| AAGTTTGGAGAAACTGGCTT+AGG | 0.457167 | 4_2:-48163377 | Msa0603580:CDS |
| GATGGTTGCTGAAAACAATC+TGG | 0.458713 | 4_2:-48162544 | Msa0603580:CDS |
| ACGGCCGTGTATCATTTAGA+TGG | 0.463585 | 4_2:-48163511 | Msa0603580:CDS |
| ATGATGATGGAAGGAAATCT+TGG | 0.471631 | 4_2:-48162440 | Msa0603580:CDS |
| TTTGAAGACATTTATGCAGA+TGG | 0.480395 | 4_2:-48163129 | Msa0603580:CDS |
| AGTGCTAGTGTTTGATACTA+AGG | 0.488101 | 4_2:+48162656 | None:intergenic |
| TAACACCTTGGGTAGGCACT+TGG | 0.499297 | 4_2:+48162878 | None:intergenic |
| TAAGTATGATTATATGAAGA+AGG | 0.500387 | 4_2:-48163423 | Msa0603580:CDS |
| TTGGAGAAACTGGCTTAGGA+TGG | 0.507795 | 4_2:-48163373 | Msa0603580:CDS |
| GTGGTGGGATAGAAAGATTA+AGG | 0.512068 | 4_2:-48163315 | Msa0603580:intron |
| ATGATTATATGAAGAAGGAT+TGG | 0.514126 | 4_2:-48163418 | Msa0603580:CDS |
| GATATGAATCATTATGAGAG+TGG | 0.516752 | 4_2:-48163006 | Msa0603580:CDS |
| TCGATATGATCCTCGTATCA+AGG | 0.519502 | 4_2:-48162959 | Msa0603580:CDS |
| TTCACAATCAAATGTTTCGC+AGG | 0.524012 | 4_2:+48163063 | None:intergenic |
| TTGGCCTGATTTCATGGAAG+GGG | 0.524765 | 4_2:-48162911 | Msa0603580:CDS |
| ATGAACATTGAGGATGATGA+TGG | 0.526027 | 4_2:-48162453 | Msa0603580:CDS |
| TTGAAGACATTTATGCAGAT+GGG | 0.527969 | 4_2:-48163128 | Msa0603580:CDS |
| TTTGGCCTGATTTCATGGAA+GGG | 0.532717 | 4_2:-48162912 | Msa0603580:CDS |
| TTGGGTAGCTCTAACACCTT+GGG | 0.533032 | 4_2:+48162867 | None:intergenic |
| AGAAAATCGTCAAGGAAAAG+AGG | 0.546060 | 4_2:-48162728 | Msa0603580:CDS |
| AATCACAGTTATTAATAGGA+TGG | 0.547499 | 4_2:-48162562 | Msa0603580:CDS |
| AGCTTAATTGTTCAGATGAG+TGG | 0.550035 | 4_2:-48163334 | Msa0603580:CDS |
| ATCAAATAACGAAAATATGG+AGG | 0.554059 | 4_2:-48163612 | Msa0603580:CDS |
| GATTGAGAATGAAGTGAGAC+GGG | 0.554128 | 4_2:-48162484 | Msa0603580:CDS |
| ATCAAGTTCATTAGGAAGAA+CGG | 0.557986 | 4_2:-48163530 | Msa0603580:CDS |
| GAGGATGAAGATGATGAAAG+TGG | 0.563940 | 4_2:-48163036 | Msa0603580:CDS |
| TGGAGAAACTGGCTTAGGAT+GGG | 0.565788 | 4_2:-48163372 | Msa0603580:CDS |
| TTCCATAATTCCTCAAGTGA+AGG | 0.570319 | 4_2:+48163159 | None:intergenic |
| CTTGGGTAGCTCTAACACCT+TGG | 0.571756 | 4_2:+48162866 | None:intergenic |
| CCGTGTATCATTTAGATGGA+AGG | 0.575435 | 4_2:-48163507 | Msa0603580:CDS |
| GTCAATAGATCCTTCACTTG+AGG | 0.578204 | 4_2:-48163169 | Msa0603580:CDS |
| ATCACCTTGACTAGATACTT+GGG | 0.586516 | 4_2:+48162849 | None:intergenic |
| GGCAGCCAAGTGCCTACCCA+AGG | 0.587341 | 4_2:-48162883 | Msa0603580:CDS |
| TGATTGAGAATGAAGTGAGA+CGG | 0.590637 | 4_2:-48162485 | Msa0603580:CDS |
| TAATTGTTCAGATGAGTGGT+GGG | 0.591982 | 4_2:-48163330 | Msa0603580:CDS |
| TGCAGATGGGACAGAGAATG+TGG | 0.593978 | 4_2:-48163115 | Msa0603580:CDS |
| TTAATTGTTCAGATGAGTGG+TGG | 0.594759 | 4_2:-48163331 | Msa0603580:CDS |
| ACATTTGATTGTGAATGTTG+AGG | 0.599133 | 4_2:-48163055 | Msa0603580:CDS |
| TCAAATAACGAAAATATGGA+GGG | 0.601566 | 4_2:-48163611 | Msa0603580:CDS |
| ATCGTCAAGGAAAAGAGGAA+AGG | 0.603694 | 4_2:-48162723 | Msa0603580:CDS |
| GAAAGGAAGACAATCAGGAG+GGG | 0.610966 | 4_2:-48162706 | Msa0603580:CDS |
| CCTTCCATCTAAATGATACA+CGG | 0.615406 | 4_2:+48163507 | None:intergenic |
| TATCATTAAGCGGAAATGTG+TGG | 0.622818 | 4_2:-48163462 | Msa0603580:CDS |
| AACAGAATTAGGATCCATAG+AGG | 0.624741 | 4_2:+48163089 | None:intergenic |
| ATCAAACACTAGCACTGCAG+TGG | 0.624776 | 4_2:-48162649 | Msa0603580:CDS |
| AGTTTGAATCTATCATTAAG+CGG | 0.624973 | 4_2:-48163472 | Msa0603580:CDS |
| TTTAATAAGTCCTTGATACG+AGG | 0.627188 | 4_2:+48162949 | None:intergenic |
| GGAAAGGAAGACAATCAGGA+GGG | 0.630567 | 4_2:-48162707 | Msa0603580:CDS |
| GCTACCCAAGTATCTAGTCA+AGG | 0.639894 | 4_2:-48162853 | Msa0603580:CDS |
| AGGAAAGGAAGACAATCAGG+AGG | 0.653504 | 4_2:-48162708 | Msa0603580:CDS |
| GATTTCATGGAAGGGGCTAG+CGG | 0.654207 | 4_2:-48162904 | Msa0603580:CDS |
| GGTGGCTAAGAAAATCGTCA+AGG | 0.655704 | 4_2:-48162736 | Msa0603580:CDS |
| AATAACGAAAATATGGAGGG+AGG | 0.657847 | 4_2:-48163608 | Msa0603580:CDS |
| GAATCATTATGAGAGTGGAG+AGG | 0.677587 | 4_2:-48163001 | Msa0603580:CDS |
| ACATTGAGGATGATGATGGA+AGG | 0.681603 | 4_2:-48162449 | Msa0603580:CDS |
| GTAGCTCTAACACCTTGGGT+AGG | 0.683455 | 4_2:+48162871 | None:intergenic |
| GATGAAGATGATGAAAGTGG+AGG | 0.688143 | 4_2:-48163033 | Msa0603580:CDS |
| ACAGAATTAGGATCCATAGA+GGG | 0.689455 | 4_2:+48163090 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGTATGATTATATGAAGA+AGG | - | chr4_2:48162610-48162629 | Msa0603580:CDS | 20.0% |
| !!! | TAAATAATGATAGTGCATTT+TGG | - | chr4_2:48163103-48163122 | Msa0603580:CDS | 20.0% |
| !! | TAAGTATGATTATATGAAGA+AGG | - | chr4_2:48162610-48162629 | Msa0603580:CDS | 20.0% |
| !!! | TAAATAATGATAGTGCATTT+TGG | - | chr4_2:48163103-48163122 | Msa0603580:CDS | 20.0% |
| ! | GGAATCAAATAACGAAAATA+TGG | - | chr4_2:48162418-48162437 | Msa0603580:CDS | 25.0% |
| ! | ATCAAATAACGAAAATATGG+AGG | - | chr4_2:48162421-48162440 | Msa0603580:CDS | 25.0% |
| ! | TCAAATAACGAAAATATGGA+GGG | - | chr4_2:48162422-48162441 | Msa0603580:CDS | 25.0% |
| !!! | AATCTTTTCATGGTCATTTT+CGG | + | chr4_2:48162468-48162487 | None:intergenic | 25.0% |
| ! | TAATGATAGATTCAAACTCT+TGG | + | chr4_2:48162559-48162578 | None:intergenic | 25.0% |
| ! | AGTTTGAATCTATCATTAAG+CGG | - | chr4_2:48162561-48162580 | Msa0603580:CDS | 25.0% |
| ! | ATGATTATATGAAGAAGGAT+TGG | - | chr4_2:48162615-48162634 | Msa0603580:CDS | 25.0% |
| !!! | TTGTGGAAATTTTTGAAGTT+TGG | - | chr4_2:48162641-48162660 | Msa0603580:CDS | 25.0% |
| !!! | TTTTTTTTGTACCATTTCCT+TGG | + | chr4_2:48163260-48163279 | None:intergenic | 25.0% |
| ! | AATCACAGTTATTAATAGGA+TGG | - | chr4_2:48163471-48163490 | Msa0603580:CDS | 25.0% |
| ! | GGAATCAAATAACGAAAATA+TGG | - | chr4_2:48162418-48162437 | Msa0603580:CDS | 25.0% |
| ! | ATCAAATAACGAAAATATGG+AGG | - | chr4_2:48162421-48162440 | Msa0603580:CDS | 25.0% |
| ! | TCAAATAACGAAAATATGGA+GGG | - | chr4_2:48162422-48162441 | Msa0603580:CDS | 25.0% |
| !!! | AATCTTTTCATGGTCATTTT+CGG | + | chr4_2:48162468-48162487 | None:intergenic | 25.0% |
| ! | TAATGATAGATTCAAACTCT+TGG | + | chr4_2:48162559-48162578 | None:intergenic | 25.0% |
| ! | AGTTTGAATCTATCATTAAG+CGG | - | chr4_2:48162561-48162580 | Msa0603580:CDS | 25.0% |
| ! | ATGATTATATGAAGAAGGAT+TGG | - | chr4_2:48162615-48162634 | Msa0603580:CDS | 25.0% |
| !!! | TTGTGGAAATTTTTGAAGTT+TGG | - | chr4_2:48162641-48162660 | Msa0603580:CDS | 25.0% |
| !!! | TTTTTTTTGTACCATTTCCT+TGG | + | chr4_2:48163260-48163279 | None:intergenic | 25.0% |
| ! | AATCACAGTTATTAATAGGA+TGG | - | chr4_2:48163471-48163490 | Msa0603580:CDS | 25.0% |
| ! | AGCTTTGTATCAAGTTCATT+AGG | - | chr4_2:48162495-48162514 | Msa0603580:CDS | 30.0% |
| ATCAAGTTCATTAGGAAGAA+CGG | - | chr4_2:48162503-48162522 | Msa0603580:CDS | 30.0% | |
| !!! | TTTTTGAAGTTTGGAGAAAC+TGG | - | chr4_2:48162650-48162669 | Msa0603580:CDS | 30.0% |
| ! | TTTCAATATTCCCCTTTTGT+AGG | - | chr4_2:48162810-48162829 | Msa0603580:intron | 30.0% |
| !! | ATTACGAAACTTTTTAGCCT+CGG | + | chr4_2:48162842-48162861 | None:intergenic | 30.0% |
| TTTGAAGACATTTATGCAGA+TGG | - | chr4_2:48162904-48162923 | Msa0603580:CDS | 30.0% | |
| TTGAAGACATTTATGCAGAT+GGG | - | chr4_2:48162905-48162924 | Msa0603580:CDS | 30.0% | |
| ACATTTGATTGTGAATGTTG+AGG | - | chr4_2:48162978-48162997 | Msa0603580:CDS | 30.0% | |
| GATATGAATCATTATGAGAG+TGG | - | chr4_2:48163027-48163046 | Msa0603580:CDS | 30.0% | |
| TTTAATAAGTCCTTGATACG+AGG | + | chr4_2:48163087-48163106 | None:intergenic | 30.0% | |
| ATTGAATTCTGATGACAGTT+CGG | - | chr4_2:48163411-48163430 | Msa0603580:CDS | 30.0% | |
| CTGCAATCACAGTTATTAAT+AGG | - | chr4_2:48163467-48163486 | Msa0603580:CDS | 30.0% | |
| CTGAAAACAATCTGGAAAAA+GGG | - | chr4_2:48163497-48163516 | Msa0603580:CDS | 30.0% | |
| ! | GGACATTTTTATGAACATTG+AGG | - | chr4_2:48163570-48163589 | Msa0603580:CDS | 30.0% |
| ! | AGCTTTGTATCAAGTTCATT+AGG | - | chr4_2:48162495-48162514 | Msa0603580:CDS | 30.0% |
| ATCAAGTTCATTAGGAAGAA+CGG | - | chr4_2:48162503-48162522 | Msa0603580:CDS | 30.0% | |
| !!! | TTTTTGAAGTTTGGAGAAAC+TGG | - | chr4_2:48162650-48162669 | Msa0603580:CDS | 30.0% |
| ! | TTTCAATATTCCCCTTTTGT+AGG | - | chr4_2:48162810-48162829 | Msa0603580:intron | 30.0% |
| !! | ATTACGAAACTTTTTAGCCT+CGG | + | chr4_2:48162842-48162861 | None:intergenic | 30.0% |
| TTTGAAGACATTTATGCAGA+TGG | - | chr4_2:48162904-48162923 | Msa0603580:CDS | 30.0% | |
| TTGAAGACATTTATGCAGAT+GGG | - | chr4_2:48162905-48162924 | Msa0603580:CDS | 30.0% | |
| ACATTTGATTGTGAATGTTG+AGG | - | chr4_2:48162978-48162997 | Msa0603580:CDS | 30.0% | |
| GATATGAATCATTATGAGAG+TGG | - | chr4_2:48163027-48163046 | Msa0603580:CDS | 30.0% | |
| TTTAATAAGTCCTTGATACG+AGG | + | chr4_2:48163087-48163106 | None:intergenic | 30.0% | |
| ATTGAATTCTGATGACAGTT+CGG | - | chr4_2:48163411-48163430 | Msa0603580:CDS | 30.0% | |
| CTGCAATCACAGTTATTAAT+AGG | - | chr4_2:48163467-48163486 | Msa0603580:CDS | 30.0% | |
| CTGAAAACAATCTGGAAAAA+GGG | - | chr4_2:48163497-48163516 | Msa0603580:CDS | 30.0% | |
| ! | GGACATTTTTATGAACATTG+AGG | - | chr4_2:48163570-48163589 | Msa0603580:CDS | 30.0% |
| AATAACGAAAATATGGAGGG+AGG | - | chr4_2:48162425-48162444 | Msa0603580:CDS | 35.0% | |
| ! | AGGGAGGAATGACTTTTAAA+TGG | - | chr4_2:48162441-48162460 | Msa0603580:CDS | 35.0% |
| ! | GCTCAGCAAAAATCTTTTCA+TGG | + | chr4_2:48162478-48162497 | None:intergenic | 35.0% |
| CCTTCCATCTAAATGATACA+CGG | + | chr4_2:48162529-48162548 | None:intergenic | 35.0% | |
| TATCATTAAGCGGAAATGTG+TGG | - | chr4_2:48162571-48162590 | Msa0603580:CDS | 35.0% | |
| CAATTAAGCTTTCCTGTAAG+AGG | + | chr4_2:48162689-48162708 | None:intergenic | 35.0% | |
| AGCTTAATTGTTCAGATGAG+TGG | - | chr4_2:48162699-48162718 | Msa0603580:CDS | 35.0% | |
| TTAATTGTTCAGATGAGTGG+TGG | - | chr4_2:48162702-48162721 | Msa0603580:CDS | 35.0% | |
| TAATTGTTCAGATGAGTGGT+GGG | - | chr4_2:48162703-48162722 | Msa0603580:CDS | 35.0% | |
| !! | TTACGAAACTTTTTAGCCTC+GGG | + | chr4_2:48162841-48162860 | None:intergenic | 35.0% |
| ATCCTTCACTTGAGGAATTA+TGG | - | chr4_2:48162872-48162891 | Msa0603580:CDS | 35.0% | |
| TTCCATAATTCCTCAAGTGA+AGG | + | chr4_2:48162877-48162896 | None:intergenic | 35.0% | |
| ACAGAATTAGGATCCATAGA+GGG | + | chr4_2:48162946-48162965 | None:intergenic | 35.0% | |
| AACAGAATTAGGATCCATAG+AGG | + | chr4_2:48162947-48162966 | None:intergenic | 35.0% | |
| TTCACAATCAAATGTTTCGC+AGG | + | chr4_2:48162973-48162992 | None:intergenic | 35.0% | |
| ATCACCTTGACTAGATACTT+GGG | + | chr4_2:48163187-48163206 | None:intergenic | 35.0% | |
| TTGGTTAACTTCAACATGTC+TGG | + | chr4_2:48163229-48163248 | None:intergenic | 35.0% | |
| AAAAACTGCATTCACTCCAA+AGG | - | chr4_2:48163276-48163295 | Msa0603580:intron | 35.0% | |
| AGAAAATCGTCAAGGAAAAG+AGG | - | chr4_2:48163305-48163324 | Msa0603580:intron | 35.0% | |
| AGTGCTAGTGTTTGATACTA+AGG | + | chr4_2:48163380-48163399 | None:intergenic | 35.0% | |
| TTGAATTCTGATGACAGTTC+GGG | - | chr4_2:48163412-48163431 | Msa0603580:CDS | 35.0% | |
| GCTGAAAACAATCTGGAAAA+AGG | - | chr4_2:48163496-48163515 | Msa0603580:CDS | 35.0% | |
| TGATTGAGAATGAAGTGAGA+CGG | - | chr4_2:48163548-48163567 | Msa0603580:CDS | 35.0% | |
| ATGAACATTGAGGATGATGA+TGG | - | chr4_2:48163580-48163599 | Msa0603580:CDS | 35.0% | |
| !! | ATGATGATGGAAGGAAATCT+TGG | - | chr4_2:48163593-48163612 | Msa0603580:CDS | 35.0% |
| AATAACGAAAATATGGAGGG+AGG | - | chr4_2:48162425-48162444 | Msa0603580:CDS | 35.0% | |
| ! | AGGGAGGAATGACTTTTAAA+TGG | - | chr4_2:48162441-48162460 | Msa0603580:CDS | 35.0% |
| ! | GCTCAGCAAAAATCTTTTCA+TGG | + | chr4_2:48162478-48162497 | None:intergenic | 35.0% |
| CCTTCCATCTAAATGATACA+CGG | + | chr4_2:48162529-48162548 | None:intergenic | 35.0% | |
| TATCATTAAGCGGAAATGTG+TGG | - | chr4_2:48162571-48162590 | Msa0603580:CDS | 35.0% | |
| CAATTAAGCTTTCCTGTAAG+AGG | + | chr4_2:48162689-48162708 | None:intergenic | 35.0% | |
| AGCTTAATTGTTCAGATGAG+TGG | - | chr4_2:48162699-48162718 | Msa0603580:CDS | 35.0% | |
| TTAATTGTTCAGATGAGTGG+TGG | - | chr4_2:48162702-48162721 | Msa0603580:CDS | 35.0% | |
| TAATTGTTCAGATGAGTGGT+GGG | - | chr4_2:48162703-48162722 | Msa0603580:CDS | 35.0% | |
| !! | TTACGAAACTTTTTAGCCTC+GGG | + | chr4_2:48162841-48162860 | None:intergenic | 35.0% |
| ATCCTTCACTTGAGGAATTA+TGG | - | chr4_2:48162872-48162891 | Msa0603580:CDS | 35.0% | |
| TTCCATAATTCCTCAAGTGA+AGG | + | chr4_2:48162877-48162896 | None:intergenic | 35.0% | |
| ACAGAATTAGGATCCATAGA+GGG | + | chr4_2:48162946-48162965 | None:intergenic | 35.0% | |
| AACAGAATTAGGATCCATAG+AGG | + | chr4_2:48162947-48162966 | None:intergenic | 35.0% | |
| TTCACAATCAAATGTTTCGC+AGG | + | chr4_2:48162973-48162992 | None:intergenic | 35.0% | |
| ATCACCTTGACTAGATACTT+GGG | + | chr4_2:48163187-48163206 | None:intergenic | 35.0% | |
| TTGGTTAACTTCAACATGTC+TGG | + | chr4_2:48163229-48163248 | None:intergenic | 35.0% | |
| AAAAACTGCATTCACTCCAA+AGG | - | chr4_2:48163276-48163295 | Msa0603580:intron | 35.0% | |
| AGAAAATCGTCAAGGAAAAG+AGG | - | chr4_2:48163305-48163324 | Msa0603580:intron | 35.0% | |
| AGTGCTAGTGTTTGATACTA+AGG | + | chr4_2:48163380-48163399 | None:intergenic | 35.0% | |
| TTGAATTCTGATGACAGTTC+GGG | - | chr4_2:48163412-48163431 | Msa0603580:CDS | 35.0% | |
| GCTGAAAACAATCTGGAAAA+AGG | - | chr4_2:48163496-48163515 | Msa0603580:CDS | 35.0% | |
| TGATTGAGAATGAAGTGAGA+CGG | - | chr4_2:48163548-48163567 | Msa0603580:CDS | 35.0% | |
| ATGAACATTGAGGATGATGA+TGG | - | chr4_2:48163580-48163599 | Msa0603580:CDS | 35.0% | |
| !! | ATGATGATGGAAGGAAATCT+TGG | - | chr4_2:48163593-48163612 | Msa0603580:CDS | 35.0% |
| CCGTGTATCATTTAGATGGA+AGG | - | chr4_2:48162526-48162545 | Msa0603580:CDS | 40.0% | |
| ! | AAGTTTGGAGAAACTGGCTT+AGG | - | chr4_2:48162656-48162675 | Msa0603580:CDS | 40.0% |
| ! | GTGGTGGGATAGAAAGATTA+AGG | - | chr4_2:48162718-48162737 | Msa0603580:CDS | 40.0% |
| GTCAATAGATCCTTCACTTG+AGG | - | chr4_2:48162864-48162883 | Msa0603580:CDS | 40.0% | |
| GAGGATGAAGATGATGAAAG+TGG | - | chr4_2:48162997-48163016 | Msa0603580:CDS | 40.0% | |
| GATGAAGATGATGAAAGTGG+AGG | - | chr4_2:48163000-48163019 | Msa0603580:CDS | 40.0% | |
| GAATCATTATGAGAGTGGAG+AGG | - | chr4_2:48163032-48163051 | Msa0603580:CDS | 40.0% | |
| TCGATATGATCCTCGTATCA+AGG | - | chr4_2:48163074-48163093 | Msa0603580:CDS | 40.0% | |
| !! | TGCATTTTGGCCTGATTTCA+TGG | - | chr4_2:48163116-48163135 | Msa0603580:CDS | 40.0% |
| ! | TTTTGGCCTGATTTCATGGA+AGG | - | chr4_2:48163120-48163139 | Msa0603580:CDS | 40.0% |
| TTTGGCCTGATTTCATGGAA+GGG | - | chr4_2:48163121-48163140 | Msa0603580:CDS | 40.0% | |
| CATCACCTTGACTAGATACT+TGG | + | chr4_2:48163188-48163207 | None:intergenic | 40.0% | |
| TTAACTTCAACATGTCTGGC+AGG | + | chr4_2:48163225-48163244 | None:intergenic | 40.0% | |
| TTTGTACCATTTCCTTGGCT+AGG | + | chr4_2:48163255-48163274 | None:intergenic | 40.0% | |
| ! | ACGATTTTCTTAGCCACCTT+TGG | + | chr4_2:48163295-48163314 | None:intergenic | 40.0% |
| ATCGTCAAGGAAAAGAGGAA+AGG | - | chr4_2:48163310-48163329 | Msa0603580:intron | 40.0% | |
| AAGAGGAAAGGAAGACAATC+AGG | - | chr4_2:48163322-48163341 | Msa0603580:CDS | 40.0% | |
| GATGGTTGCTGAAAACAATC+TGG | - | chr4_2:48163489-48163508 | Msa0603580:CDS | 40.0% | |
| GATTGAGAATGAAGTGAGAC+GGG | - | chr4_2:48163549-48163568 | Msa0603580:CDS | 40.0% | |
| !! | ACATTGAGGATGATGATGGA+AGG | - | chr4_2:48163584-48163603 | Msa0603580:CDS | 40.0% |
| CCGTGTATCATTTAGATGGA+AGG | - | chr4_2:48162526-48162545 | Msa0603580:CDS | 40.0% | |
| ! | AAGTTTGGAGAAACTGGCTT+AGG | - | chr4_2:48162656-48162675 | Msa0603580:CDS | 40.0% |
| ! | GTGGTGGGATAGAAAGATTA+AGG | - | chr4_2:48162718-48162737 | Msa0603580:CDS | 40.0% |
| GTCAATAGATCCTTCACTTG+AGG | - | chr4_2:48162864-48162883 | Msa0603580:CDS | 40.0% | |
| GAGGATGAAGATGATGAAAG+TGG | - | chr4_2:48162997-48163016 | Msa0603580:CDS | 40.0% | |
| GATGAAGATGATGAAAGTGG+AGG | - | chr4_2:48163000-48163019 | Msa0603580:CDS | 40.0% | |
| GAATCATTATGAGAGTGGAG+AGG | - | chr4_2:48163032-48163051 | Msa0603580:CDS | 40.0% | |
| TCGATATGATCCTCGTATCA+AGG | - | chr4_2:48163074-48163093 | Msa0603580:CDS | 40.0% | |
| !! | TGCATTTTGGCCTGATTTCA+TGG | - | chr4_2:48163116-48163135 | Msa0603580:CDS | 40.0% |
| ! | TTTTGGCCTGATTTCATGGA+AGG | - | chr4_2:48163120-48163139 | Msa0603580:CDS | 40.0% |
| TTTGGCCTGATTTCATGGAA+GGG | - | chr4_2:48163121-48163140 | Msa0603580:CDS | 40.0% | |
| CATCACCTTGACTAGATACT+TGG | + | chr4_2:48163188-48163207 | None:intergenic | 40.0% | |
| TTAACTTCAACATGTCTGGC+AGG | + | chr4_2:48163225-48163244 | None:intergenic | 40.0% | |
| TTTGTACCATTTCCTTGGCT+AGG | + | chr4_2:48163255-48163274 | None:intergenic | 40.0% | |
| ! | ACGATTTTCTTAGCCACCTT+TGG | + | chr4_2:48163295-48163314 | None:intergenic | 40.0% |
| ATCGTCAAGGAAAAGAGGAA+AGG | - | chr4_2:48163310-48163329 | Msa0603580:intron | 40.0% | |
| AAGAGGAAAGGAAGACAATC+AGG | - | chr4_2:48163322-48163341 | Msa0603580:CDS | 40.0% | |
| GATGGTTGCTGAAAACAATC+TGG | - | chr4_2:48163489-48163508 | Msa0603580:CDS | 40.0% | |
| GATTGAGAATGAAGTGAGAC+GGG | - | chr4_2:48163549-48163568 | Msa0603580:CDS | 40.0% | |
| !! | ACATTGAGGATGATGATGGA+AGG | - | chr4_2:48163584-48163603 | Msa0603580:CDS | 40.0% |
| ACGGCCGTGTATCATTTAGA+TGG | - | chr4_2:48162522-48162541 | Msa0603580:CDS | 45.0% | |
| ! | TGAAGAAGGATTGGCGATTG+TGG | - | chr4_2:48162624-48162643 | Msa0603580:CDS | 45.0% |
| ! | TTGGAGAAACTGGCTTAGGA+TGG | - | chr4_2:48162660-48162679 | Msa0603580:CDS | 45.0% |
| ! | TGGAGAAACTGGCTTAGGAT+GGG | - | chr4_2:48162661-48162680 | Msa0603580:CDS | 45.0% |
| TTAGGATGGGATCCTCTTAC+AGG | - | chr4_2:48162674-48162693 | Msa0603580:CDS | 45.0% | |
| TCGGGTTTCTCCTACAAAAG+GGG | + | chr4_2:48162823-48162842 | None:intergenic | 45.0% | |
| CTCGGGTTTCTCCTACAAAA+GGG | + | chr4_2:48162824-48162843 | None:intergenic | 45.0% | |
| TTCGCAGGTCGAACAGAATT+AGG | + | chr4_2:48162958-48162977 | None:intergenic | 45.0% | |
| TTGGCCTGATTTCATGGAAG+GGG | - | chr4_2:48163122-48163141 | Msa0603580:CDS | 45.0% | |
| !! | TTGGGTAGCTCTAACACCTT+GGG | + | chr4_2:48163169-48163188 | None:intergenic | 45.0% |
| GCTACCCAAGTATCTAGTCA+AGG | - | chr4_2:48163180-48163199 | Msa0603580:CDS | 45.0% | |
| AACATGTCTGGCAGGTACTT+GGG | + | chr4_2:48163217-48163236 | None:intergenic | 45.0% | |
| GTTAACCAAGTACCTAGCCA+AGG | - | chr4_2:48163240-48163259 | Msa0603580:intron | 45.0% | |
| CATTTCCTTGGCTAGGTACT+TGG | + | chr4_2:48163248-48163267 | None:intergenic | 45.0% | |
| CAAGTACCTAGCCAAGGAAA+TGG | - | chr4_2:48163246-48163265 | Msa0603580:intron | 45.0% | |
| AACTGCATTCACTCCAAAGG+TGG | - | chr4_2:48163279-48163298 | Msa0603580:intron | 45.0% | |
| GGTGGCTAAGAAAATCGTCA+AGG | - | chr4_2:48163297-48163316 | Msa0603580:intron | 45.0% | |
| AGGAAAGGAAGACAATCAGG+AGG | - | chr4_2:48163325-48163344 | Msa0603580:CDS | 45.0% | |
| GGAAAGGAAGACAATCAGGA+GGG | - | chr4_2:48163326-48163345 | Msa0603580:CDS | 45.0% | |
| GAAAGGAAGACAATCAGGAG+GGG | - | chr4_2:48163327-48163346 | Msa0603580:CDS | 45.0% | |
| ATCAAACACTAGCACTGCAG+TGG | - | chr4_2:48163384-48163403 | Msa0603580:CDS | 45.0% | |
| !! | TGGAAAAAGGGAGTGCTTTG+TGG | - | chr4_2:48163509-48163528 | Msa0603580:CDS | 45.0% |
| ACGGCCGTGTATCATTTAGA+TGG | - | chr4_2:48162522-48162541 | Msa0603580:CDS | 45.0% | |
| ! | TGAAGAAGGATTGGCGATTG+TGG | - | chr4_2:48162624-48162643 | Msa0603580:CDS | 45.0% |
| ! | TTGGAGAAACTGGCTTAGGA+TGG | - | chr4_2:48162660-48162679 | Msa0603580:CDS | 45.0% |
| ! | TGGAGAAACTGGCTTAGGAT+GGG | - | chr4_2:48162661-48162680 | Msa0603580:CDS | 45.0% |
| TTAGGATGGGATCCTCTTAC+AGG | - | chr4_2:48162674-48162693 | Msa0603580:CDS | 45.0% | |
| TCGGGTTTCTCCTACAAAAG+GGG | + | chr4_2:48162823-48162842 | None:intergenic | 45.0% | |
| CTCGGGTTTCTCCTACAAAA+GGG | + | chr4_2:48162824-48162843 | None:intergenic | 45.0% | |
| TTCGCAGGTCGAACAGAATT+AGG | + | chr4_2:48162958-48162977 | None:intergenic | 45.0% | |
| TTGGCCTGATTTCATGGAAG+GGG | - | chr4_2:48163122-48163141 | Msa0603580:CDS | 45.0% | |
| !! | TTGGGTAGCTCTAACACCTT+GGG | + | chr4_2:48163169-48163188 | None:intergenic | 45.0% |
| GCTACCCAAGTATCTAGTCA+AGG | - | chr4_2:48163180-48163199 | Msa0603580:CDS | 45.0% | |
| AACATGTCTGGCAGGTACTT+GGG | + | chr4_2:48163217-48163236 | None:intergenic | 45.0% | |
| GTTAACCAAGTACCTAGCCA+AGG | - | chr4_2:48163240-48163259 | Msa0603580:intron | 45.0% | |
| CATTTCCTTGGCTAGGTACT+TGG | + | chr4_2:48163248-48163267 | None:intergenic | 45.0% | |
| CAAGTACCTAGCCAAGGAAA+TGG | - | chr4_2:48163246-48163265 | Msa0603580:intron | 45.0% | |
| AACTGCATTCACTCCAAAGG+TGG | - | chr4_2:48163279-48163298 | Msa0603580:intron | 45.0% | |
| GGTGGCTAAGAAAATCGTCA+AGG | - | chr4_2:48163297-48163316 | Msa0603580:intron | 45.0% | |
| AGGAAAGGAAGACAATCAGG+AGG | - | chr4_2:48163325-48163344 | Msa0603580:CDS | 45.0% | |
| GGAAAGGAAGACAATCAGGA+GGG | - | chr4_2:48163326-48163345 | Msa0603580:CDS | 45.0% | |
| GAAAGGAAGACAATCAGGAG+GGG | - | chr4_2:48163327-48163346 | Msa0603580:CDS | 45.0% | |
| ATCAAACACTAGCACTGCAG+TGG | - | chr4_2:48163384-48163403 | Msa0603580:CDS | 45.0% | |
| !! | TGGAAAAAGGGAGTGCTTTG+TGG | - | chr4_2:48163509-48163528 | Msa0603580:CDS | 45.0% |
| CCTCGGGTTTCTCCTACAAA+AGG | + | chr4_2:48162825-48162844 | None:intergenic | 50.0% | |
| ! | CCTTTTGTAGGAGAAACCCG+AGG | - | chr4_2:48162822-48162841 | Msa0603580:intron | 50.0% |
| TGCAGATGGGACAGAGAATG+TGG | - | chr4_2:48162918-48162937 | Msa0603580:CDS | 50.0% | |
| AGAGAATGTGGCACCCTCTA+TGG | - | chr4_2:48162930-48162949 | Msa0603580:CDS | 50.0% | |
| CTAGCCCCTTCCATGAAATC+AGG | + | chr4_2:48163129-48163148 | None:intergenic | 50.0% | |
| GATTTCATGGAAGGGGCTAG+CGG | - | chr4_2:48163129-48163148 | Msa0603580:CDS | 50.0% | |
| TAACACCTTGGGTAGGCACT+TGG | + | chr4_2:48163158-48163177 | None:intergenic | 50.0% | |
| !! | GTAGCTCTAACACCTTGGGT+AGG | + | chr4_2:48163165-48163184 | None:intergenic | 50.0% |
| !! | CTTGGGTAGCTCTAACACCT+TGG | + | chr4_2:48163170-48163189 | None:intergenic | 50.0% |
| CAACATGTCTGGCAGGTACT+TGG | + | chr4_2:48163218-48163237 | None:intergenic | 50.0% | |
| CCTCGGGTTTCTCCTACAAA+AGG | + | chr4_2:48162825-48162844 | None:intergenic | 50.0% | |
| ! | CCTTTTGTAGGAGAAACCCG+AGG | - | chr4_2:48162822-48162841 | Msa0603580:intron | 50.0% |
| TGCAGATGGGACAGAGAATG+TGG | - | chr4_2:48162918-48162937 | Msa0603580:CDS | 50.0% | |
| AGAGAATGTGGCACCCTCTA+TGG | - | chr4_2:48162930-48162949 | Msa0603580:CDS | 50.0% | |
| CTAGCCCCTTCCATGAAATC+AGG | + | chr4_2:48163129-48163148 | None:intergenic | 50.0% | |
| GATTTCATGGAAGGGGCTAG+CGG | - | chr4_2:48163129-48163148 | Msa0603580:CDS | 50.0% | |
| TAACACCTTGGGTAGGCACT+TGG | + | chr4_2:48163158-48163177 | None:intergenic | 50.0% | |
| !! | GTAGCTCTAACACCTTGGGT+AGG | + | chr4_2:48163165-48163184 | None:intergenic | 50.0% |
| !! | CTTGGGTAGCTCTAACACCT+TGG | + | chr4_2:48163170-48163189 | None:intergenic | 50.0% |
| CAACATGTCTGGCAGGTACT+TGG | + | chr4_2:48163218-48163237 | None:intergenic | 50.0% | |
| GGCAGCCAAGTGCCTACCCA+AGG | - | chr4_2:48163150-48163169 | Msa0603580:CDS | 65.0% | |
| GGCAGCCAAGTGCCTACCCA+AGG | - | chr4_2:48163150-48163169 | Msa0603580:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 48162416 | 48163639 | 48162416 | ID=Msa0603580;Name=Msa0603580 |
| chr4_2 | mRNA | 48162416 | 48163639 | 48162416 | ID=Msa0603580-mRNA-1;Parent=Msa0603580;Name=Msa0603580-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|350 |
| chr4_2 | exon | 48163316 | 48163639 | 48163316 | ID=Msa0603580-mRNA-1:exon:11088;Parent=Msa0603580-mRNA-1 |
| chr4_2 | exon | 48162837 | 48163223 | 48162837 | ID=Msa0603580-mRNA-1:exon:11087;Parent=Msa0603580-mRNA-1 |
| chr4_2 | exon | 48162416 | 48162757 | 48162416 | ID=Msa0603580-mRNA-1:exon:11086;Parent=Msa0603580-mRNA-1 |
| chr4_2 | CDS | 48163316 | 48163639 | 48163316 | ID=Msa0603580-mRNA-1:cds;Parent=Msa0603580-mRNA-1 |
| chr4_2 | CDS | 48162837 | 48163223 | 48162837 | ID=Msa0603580-mRNA-1:cds;Parent=Msa0603580-mRNA-1 |
| chr4_2 | CDS | 48162416 | 48162757 | 48162416 | ID=Msa0603580-mRNA-1:cds;Parent=Msa0603580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
