AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0540440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540440 MtrunA17_Chr4g0002981 82.584 178 27 2 30 203 1113 1290 2.77e-92 293
Msa0540440 MtrunA17_Chr2g0333451 65.116 172 56 2 30 197 1118 1289 4.04e-60 202
Msa0540440 MtrunA17_Chr8g0354961 38.710 155 91 2 42 192 35 189 6.25e-28 103
Msa0540440 MtrunA17_Chr8g0354921 36.076 158 97 2 39 192 178 335 3.84e-25 100
Msa0540440 MtrunA17_Chr4g0049851 87.500 40 4 1 1 40 182 220 1.86e-15 73.9
Msa0540440 MtrunA17_Chr4g0049861 85.000 40 5 1 1 40 180 218 1.95e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540440 AT1G15780.1 57.229 166 65 3 35 194 1166 1331 1.88e-52 181
Msa0540440 AT1G15780.3 57.229 166 65 3 35 194 1188 1353 1.92e-52 181
Msa0540440 AT2G10440.2 43.671 158 72 3 40 192 694 839 9.39e-32 121
Msa0540440 AT2G10440.1 41.667 168 71 3 40 192 774 929 1.12e-31 121
Msa0540440 AT1G15780.2 51.961 102 43 3 35 130 1166 1267 5.44e-23 96.7

Find 72 sgRNAs with CRISPR-Local

Find 881 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTTGATTGTAGGAATTT+TGG 0.123361 4_1:-22670810 Msa0540440:five_prime_UTR
GGGAATCACGGCAATATAAT+TGG 0.209119 4_1:-22670604 Msa0540440:CDS
TGTGTATTCAATTGTGTATT+AGG 0.231834 4_1:+22671029 None:intergenic
GGAGAAGAATTAGGATAGTT+TGG 0.245726 4_1:+22669470 None:intergenic
TCTGAGTATGCACAACAATT+TGG 0.247064 4_1:-22669111 Msa0540440:CDS
GGATTCAACTGGTATGAATA+TGG 0.250214 4_1:+22669448 None:intergenic
AAAATTCAAAATTTGATTGT+AGG 0.273023 4_1:-22670818 Msa0540440:five_prime_UTR
TACTCATGTGACTTTATAAC+TGG 0.286556 4_1:+22660402 None:intergenic
TATTCAGCCTCTGCGCTTGC+TGG 0.298054 4_1:-22669498 Msa0540440:CDS
GCAGGTTAATCATGCCCTTT+TGG 0.305926 4_1:-22669788 Msa0540440:intron
ATGAATATGGGAGAAGAATT+AGG 0.311167 4_1:+22669461 None:intergenic
TCTCTATTTCGTTTAAGAAA+TGG 0.351637 4_1:+22660428 None:intergenic
AAGTCTTTGCTATATCCTTA+AGG 0.366345 4_1:+22669160 None:intergenic
TTCATATCCCTCTCAAGAAA+TGG 0.366645 4_1:+22670664 None:intergenic
GCTGCTGCTGACTGGGTTCA+CGG 0.370133 4_1:-22669682 Msa0540440:CDS
CTCACAACCTATGTCCCTTA+AGG 0.372725 4_1:-22669175 Msa0540440:CDS
TTTGCTGTATTTCTTCCAAA+AGG 0.392527 4_1:+22669773 None:intergenic
TTCCCCTTTCTTTGTCATGA+TGG 0.394444 4_1:+22670966 None:intergenic
TGGAACACTGCCGTTGTGAT+TGG 0.406671 4_1:-22670625 Msa0540440:CDS
CTACTACTGTGTCAATAATT+CGG 0.407805 4_1:+22669743 None:intergenic
TGAACCACGGAGAGGTCATT+TGG 0.409883 4_1:-22670645 Msa0540440:CDS
TCAGTTGATTCCCCGTCAAC+AGG 0.414927 4_1:+22670733 None:intergenic
GCTATTATTGAATAAACAAC+AGG 0.420767 4_1:+22660466 None:intergenic
CTGCTGCTGACTGGGTTCAC+GGG 0.422682 4_1:-22669681 Msa0540440:CDS
GGAACATTCAGCTCTAAGTA+TGG 0.422754 4_1:-22669084 Msa0540440:CDS
GCTATATCCTTAAGGGACAT+AGG 0.441593 4_1:+22669168 None:intergenic
AGTCTTTGCTATATCCTTAA+GGG 0.444176 4_1:+22669161 None:intergenic
AGCAAGCGCAGAGGCTGAAT+AGG 0.446990 4_1:+22669500 None:intergenic
CATGACAAAGAAAGGGGAAA+AGG 0.459323 4_1:-22670962 Msa0540440:five_prime_UTR
TTGCTGTATTTCTTCCAAAA+GGG 0.460068 4_1:+22669774 None:intergenic
GGAATCACGGCAATATAATT+GGG 0.467767 4_1:-22670603 Msa0540440:CDS
TTTCCATCATGACAAAGAAA+GGG 0.469508 4_1:-22670969 Msa0540440:five_prime_UTR
GGAACACTGCCGTTGTGATT+GGG 0.476635 4_1:-22670624 Msa0540440:CDS
TCATATCCCTCTCAAGAAAT+GGG 0.484312 4_1:+22670665 None:intergenic
TTATCTCACCGGGATTCAAC+TGG 0.484647 4_1:+22669437 None:intergenic
ATGGCAGGAGTTCACATCTT+GGG 0.498030 4_1:-22669058 Msa0540440:CDS
GAAGAATTAGGATAGTTTGG+AGG 0.499904 4_1:+22669473 None:intergenic
GATTCAACTGGTATGAATAT+GGG 0.502870 4_1:+22669449 None:intergenic
AATTTGCAGAACCTGTTGAC+GGG 0.505913 4_1:-22670744 Msa0540440:five_prime_UTR
CTCTAAGTATGGAGAATGGC+AGG 0.507662 4_1:-22669073 Msa0540440:CDS
AATAATGTTTGAAACCTCCT+AGG 0.509071 4_1:+22660509 None:intergenic
ACTAAAAGATATGAATAGAG+AGG 0.513043 4_1:+22671058 None:intergenic
ACACTTTATCGACCAAGAAA+AGG 0.517308 4_1:-22670881 Msa0540440:five_prime_UTR
GAAATAACACCGCGAGCAGT+AGG 0.532677 4_1:+22669132 None:intergenic
GAGTATGCACAACAATTTGG+TGG 0.545184 4_1:-22669108 Msa0540440:CDS
TTTATATAAACAAACATCGA+AGG 0.550825 4_1:+22670838 None:intergenic
AATGGCAGGAGTTCACATCT+TGG 0.551776 4_1:-22669059 Msa0540440:CDS
AGGTTGTGAGAAATTACATA+AGG 0.561974 4_1:+22669188 None:intergenic
TCTCATGTAGAGAAACCAAA+TGG 0.563059 4_1:+22670781 None:intergenic
TATAAGCCCATTTCTTGAGA+GGG 0.564013 4_1:-22670671 Msa0540440:CDS
AAAGATGGGCTGAGAGACAC+AGG 0.565080 4_1:+22669634 None:intergenic
GCCGTTGTGATTGGGAATCA+CGG 0.569579 4_1:-22670616 Msa0540440:CDS
TATTCATACCAGTTGAATCC+CGG 0.577197 4_1:-22669445 Msa0540440:intron
TTCCATCATGACAAAGAAAG+GGG 0.580011 4_1:-22670968 Msa0540440:five_prime_UTR
TTATGGCAGTAAGGGGAATG+AGG 0.581348 4_1:-22669247 Msa0540440:intron
CTTTGCACTGAAGTATAACA+TGG 0.585333 4_1:-22670698 Msa0540440:exon
TCTCTACATGAGAGAAGAAG+TGG 0.588571 4_1:-22670771 Msa0540440:five_prime_UTR
ATTTCGTTTAAGAAATGGAG+AGG 0.597227 4_1:+22660433 None:intergenic
CTAAAAGATATGAATAGAGA+GGG 0.597671 4_1:+22671059 None:intergenic
TCAGCTCTAAGTATGGAGAA+TGG 0.598733 4_1:-22669077 Msa0540440:CDS
ATATAAGCCCATTTCTTGAG+AGG 0.600910 4_1:-22670672 Msa0540440:CDS
GAATTTGCAGAACCTGTTGA+CGG 0.607240 4_1:-22670745 Msa0540440:five_prime_UTR
ACTTGTGATCCTACTGCTCG+CGG 0.635100 4_1:-22669141 Msa0540440:CDS
AATGAAACAACATTTGACAA+TGG 0.643959 4_1:+22669657 None:intergenic
TATGCACAACAATTTGGTGG+AGG 0.647411 4_1:-22669105 Msa0540440:CDS
CTTGAGAGGGATATGAACCA+CGG 0.660131 4_1:-22670658 Msa0540440:CDS
TATAATTGGGATACACGTGA+AGG 0.663204 4_1:-22670590 Msa0540440:intron
ATTTGCAGAACCTGTTGACG+GGG 0.676991 4_1:-22670743 Msa0540440:five_prime_UTR
GGAGGAACCAGCAAGCGCAG+AGG 0.697641 4_1:+22669491 None:intergenic
GCCGTGATTCCCAATCACAA+CGG 0.710117 4_1:+22670615 None:intergenic
GAGGGATATGAACCACGGAG+AGG 0.717220 4_1:-22670653 Msa0540440:CDS
TGTTCCAAATGACCTCTCCG+TGG 0.733020 4_1:+22670641 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACTATATAATTTTTCTA+GGG - chr4_1:22663238-22663257 Msa0540440:intron 10.0%
!!! ATATGTTTAATTTATGTATA+CGG - chr4_1:22664014-22664033 Msa0540440:intron 10.0%
!! TGATATAAATATTATTCTTT+CGG - chr4_1:22665005-22665024 Msa0540440:intron 10.0%
!!! TATAACTTTTAAAGTTAAAA+TGG - chr4_1:22667824-22667843 Msa0540440:intron 10.0%
!!! ATAACTTTTAAAGTTAAAAT+GGG - chr4_1:22667825-22667844 Msa0540440:intron 10.0%
!!! AAAACTATATAATTTTTCTA+GGG - chr4_1:22663238-22663257 Msa0540440:intron 10.0%
!!! ATATGTTTAATTTATGTATA+CGG - chr4_1:22664014-22664033 Msa0540440:intron 10.0%
!!! ACTATTTATAAAAATTTTGC+AGG - chr4_1:22660561-22660580 Msa0540440:intron 15.0%
!!! CTATTTATAAAAATTTTGCA+GGG - chr4_1:22660562-22660581 Msa0540440:intron 15.0%
!! AAAATTCAAAATTTGATTGT+AGG - chr4_1:22660670-22660689 Msa0540440:intron 15.0%
!! TGTATTAAAAAAATTTACAG+TGG + chr4_1:22661566-22661585 None:intergenic 15.0%
!!! CATATTTTGATTTTAAAGAT+GGG + chr4_1:22661871-22661890 None:intergenic 15.0%
!!! ACATATTTTGATTTTAAAGA+TGG + chr4_1:22661872-22661891 None:intergenic 15.0%
!! AAGATTATAAAACACAAATA+AGG + chr4_1:22661961-22661980 None:intergenic 15.0%
!!! TAGTGTTATTATATATGTTA+TGG - chr4_1:22662224-22662243 Msa0540440:intron 15.0%
!! AATGAATTATTCTTAAATAG+TGG - chr4_1:22662471-22662490 Msa0540440:intron 15.0%
!!! GAAAACTATATAATTTTTCT+AGG - chr4_1:22663237-22663256 Msa0540440:intron 15.0%
!!! TATTATCTTGATTCATTTTA+CGG + chr4_1:22664332-22664351 None:intergenic 15.0%
!! GATATAAATATTATTCTTTC+GGG - chr4_1:22665006-22665025 Msa0540440:intron 15.0%
!!! TATGAAAAAATATGATTTTC+TGG - chr4_1:22665939-22665958 Msa0540440:intron 15.0%
!!! TTTTGAATTCAATATCTTAA+CGG + chr4_1:22666454-22666473 None:intergenic 15.0%
!!! GATGTTTATAGATTTTAAAA+TGG - chr4_1:22666520-22666539 Msa0540440:intron 15.0%
!!! TTAAAATGGAATTTTTTTGT+AGG - chr4_1:22666534-22666553 Msa0540440:intron 15.0%
!!! TAAATTATGAAGTTTTCTTA+AGG - chr4_1:22666722-22666741 Msa0540440:intron 15.0%
!!! TAAGAAAATTTTCTAAACTT+TGG + chr4_1:22667946-22667965 None:intergenic 15.0%
!!! GAAAACTATATAATTTTTCT+AGG - chr4_1:22663237-22663256 Msa0540440:intron 15.0%
!!! TATTATCTTGATTCATTTTA+CGG + chr4_1:22664332-22664351 None:intergenic 15.0%
!! TGATGTAAATATTATTCATT+CGG - chr4_1:22670829-22670848 Msa0540440:five_prime_UTR 15.0%
!! TTTATATAAACAAACATCGA+AGG + chr4_1:22660653-22660672 None:intergenic 20.0%
!!! AAATTTGATTGTAGGAATTT+TGG - chr4_1:22660678-22660697 Msa0540440:intron 20.0%
!! ATTGCCATTAATATATGTTA+TGG - chr4_1:22661096-22661115 Msa0540440:intron 20.0%
!!! TTGATTTGCTTTTCTAAAAA+GGG - chr4_1:22661364-22661383 Msa0540440:intron 20.0%
!!! TGCTTTAATTTTGCTAATTT+TGG - chr4_1:22662094-22662113 Msa0540440:intron 20.0%
!! ATTCATGAAAAGTAACTTAA+TGG - chr4_1:22662553-22662572 Msa0540440:intron 20.0%
!!! AAGGATATTTAATTGGTTTT+TGG - chr4_1:22662670-22662689 Msa0540440:intron 20.0%
!!! AGGATATTTAATTGGTTTTT+GGG - chr4_1:22662671-22662690 Msa0540440:intron 20.0%
!!! ATAAGAAGAGATTTAAGTTA+GGG - chr4_1:22662902-22662921 Msa0540440:intron 20.0%
!! ACTTATGAATACTTGTTTAA+TGG - chr4_1:22663305-22663324 Msa0540440:intron 20.0%
!! TCTTAAACATAATCATACAT+GGG + chr4_1:22664445-22664464 None:intergenic 20.0%
!! TTCTTAAACATAATCATACA+TGG + chr4_1:22664446-22664465 None:intergenic 20.0%
!! AAGTTAAGATAAAACTATGA+CGG - chr4_1:22664662-22664681 Msa0540440:intron 20.0%
!!! AAGGATGTAATTTTTATGTA+TGG - chr4_1:22664945-22664964 Msa0540440:intron 20.0%
!! TTATATGTTCAGTAAGAATA+AGG - chr4_1:22665698-22665717 Msa0540440:intron 20.0%
!! ACATTAATCAATTCAATTCA+CGG + chr4_1:22665831-22665850 None:intergenic 20.0%
!! TTTGAATTCAATATCTTAAC+GGG + chr4_1:22666453-22666472 None:intergenic 20.0%
!!! AAGTTTACAAGATTTTAGAA+AGG - chr4_1:22666472-22666491 Msa0540440:intron 20.0%
!! AACTTCATAATTTAACACAT+GGG + chr4_1:22666716-22666735 None:intergenic 20.0%
!! AAACTTCATAATTTAACACA+TGG + chr4_1:22666717-22666736 None:intergenic 20.0%
!! AATTATGATAAGTCTACTAT+GGG - chr4_1:22666841-22666860 Msa0540440:intron 20.0%
!! ATTACCATAATACTTTACTT+GGG + chr4_1:22666952-22666971 None:intergenic 20.0%
!! AAAGAATATGTACTATGATA+AGG - chr4_1:22667363-22667382 Msa0540440:intron 20.0%
!! TAACATTTCTTCTTTAATAC+CGG + chr4_1:22667493-22667512 None:intergenic 20.0%
!! ATGCATAACATATATCTTAT+AGG + chr4_1:22667617-22667636 None:intergenic 20.0%
!!! ATTTCGTAATGTTTTCTTTT+AGG - chr4_1:22667888-22667907 Msa0540440:intron 20.0%
!! TTGATGAATGTTATATGTAT+AGG - chr4_1:22668048-22668067 Msa0540440:intron 20.0%
!! ATTCATGAAAAGTAACTTAA+TGG - chr4_1:22662553-22662572 Msa0540440:intron 20.0%
!!! AAGGATATTTAATTGGTTTT+TGG - chr4_1:22662670-22662689 Msa0540440:intron 20.0%
!!! AGGATATTTAATTGGTTTTT+GGG - chr4_1:22662671-22662690 Msa0540440:intron 20.0%
!!! ATAAGAAGAGATTTAAGTTA+GGG - chr4_1:22662902-22662921 Msa0540440:intron 20.0%
!! TCTTAAACATAATCATACAT+GGG + chr4_1:22664445-22664464 None:intergenic 20.0%
!! TTCTTAAACATAATCATACA+TGG + chr4_1:22664446-22664465 None:intergenic 20.0%
!!! GTTTTATCTTAACTTGTTAT+AGG + chr4_1:22664657-22664676 None:intergenic 20.0%
!! AAGTTAAGATAAAACTATGA+CGG - chr4_1:22664662-22664681 Msa0540440:intron 20.0%
!!! AAGGATGTAATTTTTATGTA+TGG - chr4_1:22664945-22664964 Msa0540440:intron 20.0%
!! GATGTAAATATTATTCATTC+GGG - chr4_1:22670830-22670849 Msa0540440:five_prime_UTR 20.0%
! CTAAAAGATATGAATAGAGA+GGG + chr4_1:22660432-22660451 None:intergenic 25.0%
! ACTAAAAGATATGAATAGAG+AGG + chr4_1:22660433-22660452 None:intergenic 25.0%
! TGTGTATTCAATTGTGTATT+AGG + chr4_1:22660462-22660481 None:intergenic 25.0%
! TTTATTAGATAGCTGAAAGA+CGG + chr4_1:22660966-22660985 None:intergenic 25.0%
! TATTATATGGAAGGAAATAC+AGG - chr4_1:22661042-22661061 Msa0540440:intron 25.0%
! CATATTCTGTTTCAAATACA+CGG + chr4_1:22661071-22661090 None:intergenic 25.0%
! CCTACCATAACATATATTAA+TGG + chr4_1:22661103-22661122 None:intergenic 25.0%
! CCATTAATATATGTTATGGT+AGG - chr4_1:22661100-22661119 Msa0540440:intron 25.0%
! AAGTTTAACAGTTTAAAGGA+TGG + chr4_1:22661128-22661147 None:intergenic 25.0%
! CCAAAAGTTTAACAGTTTAA+AGG + chr4_1:22661132-22661151 None:intergenic 25.0%
!! CCTTTAAACTGTTAAACTTT+TGG - chr4_1:22661129-22661148 Msa0540440:intron 25.0%
! AATTATTCTAGCATACATGT+AGG - chr4_1:22661292-22661311 Msa0540440:intron 25.0%
! TTTAGAGAAATATGGAATAC+CGG + chr4_1:22661318-22661337 None:intergenic 25.0%
!!! GTTGATTTGCTTTTCTAAAA+AGG - chr4_1:22661363-22661382 Msa0540440:intron 25.0%
!! CATTTGGAATATGTTTGATA+TGG - chr4_1:22661467-22661486 Msa0540440:intron 25.0%
! ACTGTAAACTAATCAAACAT+GGG + chr4_1:22661521-22661540 None:intergenic 25.0%
! AACTGTAAACTAATCAAACA+TGG + chr4_1:22661522-22661541 None:intergenic 25.0%
! AAAATTTACAGTGGCTTAAT+GGG + chr4_1:22661557-22661576 None:intergenic 25.0%
! AAAAATTTACAGTGGCTTAA+TGG + chr4_1:22661558-22661577 None:intergenic 25.0%
! AATGAAACAACATTTGACAA+TGG + chr4_1:22661834-22661853 None:intergenic 25.0%
! AATATGTTTCACTACAAGTA+TGG - chr4_1:22661885-22661904 Msa0540440:intron 25.0%
! AATAATCAGTTGCAAAATCT+GGG + chr4_1:22661914-22661933 None:intergenic 25.0%
! AAATAATCAGTTGCAAAATC+TGG + chr4_1:22661915-22661934 None:intergenic 25.0%
! TTAGCAAAATTAAAGCATGT+GGG + chr4_1:22662091-22662110 None:intergenic 25.0%
! ATTAGCAAAATTAAAGCATG+TGG + chr4_1:22662092-22662111 None:intergenic 25.0%
! GCAGCAAAATTTAAAGATAA+GGG + chr4_1:22662187-22662206 None:intergenic 25.0%
! TTATATATGTTATGGCAGTA+AGG - chr4_1:22662232-22662251 Msa0540440:intron 25.0%
! TATATATGTTATGGCAGTAA+GGG - chr4_1:22662233-22662252 Msa0540440:intron 25.0%
! TGAATTAAATTCATCTGACA+CGG + chr4_1:22662538-22662557 None:intergenic 25.0%
! ACATAACTTATCTTGAATCA+TGG + chr4_1:22662819-22662838 None:intergenic 25.0%
!! AACCAAGCTTTTATAAACTT+AGG + chr4_1:22662855-22662874 None:intergenic 25.0%
! AACTTAAATCTCTTCTTATG+TGG + chr4_1:22662901-22662920 None:intergenic 25.0%
!! CATAAGAAGAGATTTAAGTT+AGG - chr4_1:22662901-22662920 Msa0540440:intron 25.0%
! GTTTAGACAAAGAAAGAAAA+AGG - chr4_1:22663095-22663114 Msa0540440:intron 25.0%
! TTCATAAGTATAAAGATGCA+TGG + chr4_1:22663294-22663313 None:intergenic 25.0%
!! ATGTTTTGTATTGAGGTTTT+TGG - chr4_1:22663376-22663395 Msa0540440:intron 25.0%
!! TGTTTTGTATTGAGGTTTTT+GGG - chr4_1:22663377-22663396 Msa0540440:intron 25.0%
! TTGTAGTGTATAATTAAGCA+TGG - chr4_1:22663717-22663736 Msa0540440:intron 25.0%
! AATTATGGCATGAGTTTAAT+GGG - chr4_1:22663748-22663767 Msa0540440:intron 25.0%
!! ATCTGAAACAAATAAGGATT+GGG + chr4_1:22664841-22664860 None:intergenic 25.0%
!! TATCTGAAACAAATAAGGAT+TGG + chr4_1:22664842-22664861 None:intergenic 25.0%
! TTAAATTACAACTAAGGTAG+TGG - chr4_1:22665160-22665179 Msa0540440:intron 25.0%
! TAAATTACAACTAAGGTAGT+GGG - chr4_1:22665161-22665180 Msa0540440:intron 25.0%
!!! AATGCTAAATTAAGTTGATC+AGG + chr4_1:22665230-22665249 None:intergenic 25.0%
! ATATTCAACTTCTTCACTTA+CGG + chr4_1:22665499-22665518 None:intergenic 25.0%
! TATGCAAAGGAAATATATTC+TGG - chr4_1:22665577-22665596 Msa0540440:intron 25.0%
!! GTTTGTTACATAAAAGATTG+TGG + chr4_1:22666125-22666144 None:intergenic 25.0%
! TTTCTTCCTTAGAAATCATA+GGG + chr4_1:22666184-22666203 None:intergenic 25.0%
!! TTTTCTTCCTTAGAAATCAT+AGG + chr4_1:22666185-22666204 None:intergenic 25.0%
! AATTAAGCAAAACATAGATC+CGG + chr4_1:22666418-22666437 None:intergenic 25.0%
! GAATTATGATAAGTCTACTA+TGG - chr4_1:22666840-22666859 Msa0540440:intron 25.0%
!! TATTCCCAAGTAAAGTATTA+TGG - chr4_1:22666945-22666964 Msa0540440:intron 25.0%
! CATTACCATAATACTTTACT+TGG + chr4_1:22666953-22666972 None:intergenic 25.0%
!! ATCTTCTTGAACTTTTCATA+TGG + chr4_1:22667042-22667061 None:intergenic 25.0%
! AAGTTCTCAAAATGTTAAGT+AGG - chr4_1:22667246-22667265 Msa0540440:intron 25.0%
! TTATGTAATCAGTCATGAAA+AGG - chr4_1:22667278-22667297 Msa0540440:intron 25.0%
! TATGTAATCAGTCATGAAAA+GGG - chr4_1:22667279-22667298 Msa0540440:intron 25.0%
!! GGTATTGAATTATTAAAGTG+TGG - chr4_1:22667465-22667484 Msa0540440:intron 25.0%
! AAGAAATGTTATGCAGAATA+AGG - chr4_1:22667502-22667521 Msa0540440:intron 25.0%
! AAGTTTCAAAACATCAAATC+CGG + chr4_1:22667547-22667566 None:intergenic 25.0%
! TTCAAGAATTCCATTATGAA+TGG - chr4_1:22667701-22667720 Msa0540440:intron 25.0%
! GTTTATATCTCCATTCATAA+TGG + chr4_1:22667714-22667733 None:intergenic 25.0%
! TAAAGTTAAAATGGGTAGTA+AGG - chr4_1:22667833-22667852 Msa0540440:intron 25.0%
! AAAGTTAAAATGGGTAGTAA+GGG - chr4_1:22667834-22667853 Msa0540440:intron 25.0%
! TTATACAATTATTCGTTCCA+AGG - chr4_1:22667911-22667930 Msa0540440:intron 25.0%
!! TTTTCTAAACTTTGGTACTT+GGG + chr4_1:22667938-22667957 None:intergenic 25.0%
!! ATTTTCTAAACTTTGGTACT+TGG + chr4_1:22667939-22667958 None:intergenic 25.0%
! AATGGTAATTAAGATCAAGA+AGG - chr4_1:22668135-22668154 Msa0540440:intron 25.0%
!! GTTTAGTTATATGTGGATTA+AGG - chr4_1:22668162-22668181 Msa0540440:intron 25.0%
! ATGACAAAACTTATCATCTA+TGG + chr4_1:22668255-22668274 None:intergenic 25.0%
!!! ATAAGTTTTGTCATGATGAT+TGG - chr4_1:22668261-22668280 Msa0540440:intron 25.0%
!!! GAGGACGAAATTTTTTTTAA+GGG - chr4_1:22668303-22668322 Msa0540440:intron 25.0%
!!! AGGACGAAATTTTTTTTAAG+GGG - chr4_1:22668304-22668323 Msa0540440:intron 25.0%
! TGAATTAAATTCATCTGACA+CGG + chr4_1:22662538-22662557 None:intergenic 25.0%
! ACATAACTTATCTTGAATCA+TGG + chr4_1:22662819-22662838 None:intergenic 25.0%
!! AACCAAGCTTTTATAAACTT+AGG + chr4_1:22662855-22662874 None:intergenic 25.0%
! AACTTAAATCTCTTCTTATG+TGG + chr4_1:22662901-22662920 None:intergenic 25.0%
!! CATAAGAAGAGATTTAAGTT+AGG - chr4_1:22662901-22662920 Msa0540440:intron 25.0%
! ACTTGTGAATACTTGTTTAA+TGG - chr4_1:22669145-22669164 Msa0540440:CDS 25.0%
!! ATGTTTTGTATTGAGGTTTT+TGG - chr4_1:22663376-22663395 Msa0540440:intron 25.0%
!! TGTTTTGTATTGAGGTTTTT+GGG - chr4_1:22663377-22663396 Msa0540440:intron 25.0%
! TTGTAGTGTATAATTAAGCA+TGG - chr4_1:22663717-22663736 Msa0540440:intron 25.0%
!! ATCTGAAACAAATAAGGATT+GGG + chr4_1:22664841-22664860 None:intergenic 25.0%
!! TATCTGAAACAAATAAGGAT+TGG + chr4_1:22664842-22664861 None:intergenic 25.0%
! GCTATTATTGAATAAACAAC+AGG + chr4_1:22671025-22671044 None:intergenic 25.0%
! TCTCTATTTCGTTTAAGAAA+TGG + chr4_1:22671063-22671082 None:intergenic 25.0%
! TTTTCCATCATGACAAAGAA+AGG - chr4_1:22660518-22660537 Msa0540440:three_prime_UTR 30.0%
TTTCCATCATGACAAAGAAA+GGG - chr4_1:22660519-22660538 Msa0540440:three_prime_UTR 30.0%
! CACTGAGAGTACATATTATA+TGG - chr4_1:22661029-22661048 Msa0540440:intron 30.0%
! GAGAGTACATATTATATGGA+AGG - chr4_1:22661033-22661052 Msa0540440:intron 30.0%
! CGTGTATTTGAAACAGAATA+TGG - chr4_1:22661069-22661088 Msa0540440:intron 30.0%
!!! TGTTAAACTTTTGGCTTGAA+TGG - chr4_1:22661138-22661157 Msa0540440:intron 30.0%
! ACAAGGGTTGAAAACAATTT+TGG + chr4_1:22661166-22661185 None:intergenic 30.0%
ATAAAACAACTGACCTCTAT+TGG + chr4_1:22661222-22661241 None:intergenic 30.0%
!! GGTCAGTTGTTTTATATTGA+TGG - chr4_1:22661227-22661246 Msa0540440:intron 30.0%
AGACATGTTAAACTCTTATC+TGG - chr4_1:22661251-22661270 Msa0540440:intron 30.0%
AAAGACGGTTTAGAGAAATA+TGG + chr4_1:22661326-22661345 None:intergenic 30.0%
AAACTCATAAAAGCGATTAG+AGG - chr4_1:22661417-22661436 Msa0540440:intron 30.0%
AACTCATAAAAGCGATTAGA+GGG - chr4_1:22661418-22661437 Msa0540440:intron 30.0%
ATATGCTACTGTCATTAACT+TGG - chr4_1:22661441-22661460 Msa0540440:intron 30.0%
TTGCTGTATTTCTTCCAAAA+GGG + chr4_1:22661717-22661736 None:intergenic 30.0%
! TTTGCTGTATTTCTTCCAAA+AGG + chr4_1:22661718-22661737 None:intergenic 30.0%
CTACTACTGTGTCAATAATT+CGG + chr4_1:22661748-22661767 None:intergenic 30.0%
ATGAATATGGGAGAAGAATT+AGG + chr4_1:22662030-22662049 None:intergenic 30.0%
GATTCAACTGGTATGAATAT+GGG + chr4_1:22662042-22662061 None:intergenic 30.0%
AAAATGTTCCATTATCTCAC+CGG + chr4_1:22662065-22662084 None:intergenic 30.0%
TAGCAAAATTAAAGCATGTG+GGG + chr4_1:22662090-22662109 None:intergenic 30.0%
! GTATTTTCTCTTCCAAATAG+TGG - chr4_1:22662131-22662150 Msa0540440:intron 30.0%
CGCAGCAAAATTTAAAGATA+AGG + chr4_1:22662188-22662207 None:intergenic 30.0%
ATATATGTTATGGCAGTAAG+GGG - chr4_1:22662234-22662253 Msa0540440:intron 30.0%
AGGTTGTGAGAAATTACATA+AGG + chr4_1:22662303-22662322 None:intergenic 30.0%
! AGTCTTTGCTATATCCTTAA+GGG + chr4_1:22662330-22662349 None:intergenic 30.0%
! AAGTCTTTGCTATATCCTTA+AGG + chr4_1:22662331-22662350 None:intergenic 30.0%
! TGAAATTACCATTTTACCCT+TGG + chr4_1:22662644-22662663 None:intergenic 30.0%
ACGTGGAAAGGATATTTAAT+TGG - chr4_1:22662663-22662682 Msa0540440:intron 30.0%
AACTTATCTTGAATCATGGT+TGG + chr4_1:22662815-22662834 None:intergenic 30.0%
ATAAACTTAGGAGATCATGA+GGG + chr4_1:22662843-22662862 None:intergenic 30.0%
TATAAACTTAGGAGATCATG+AGG + chr4_1:22662844-22662863 None:intergenic 30.0%
CTCCTAAGTTTATAAAAGCT+TGG - chr4_1:22662850-22662869 Msa0540440:intron 30.0%
!!! ATAAAAGCTTGGTTTTGCTT+TGG - chr4_1:22662861-22662880 Msa0540440:intron 30.0%
!!! TAAAAGCTTGGTTTTGCTTT+GGG - chr4_1:22662862-22662881 Msa0540440:intron 30.0%
GTTAGAAACAAAGAGAAAGA+TGG - chr4_1:22662981-22663000 Msa0540440:intron 30.0%
AAAGATGGTTTGAAGATTGT+TGG - chr4_1:22662996-22663015 Msa0540440:intron 30.0%
AAGCAAGAAAACAACAAGAT+TGG - chr4_1:22663068-22663087 Msa0540440:intron 30.0%
!! GTTAAAAACACCATTTTTGC+AGG - chr4_1:22663399-22663418 Msa0540440:intron 30.0%
GAATTATGGCATGAGTTTAA+TGG - chr4_1:22663747-22663766 Msa0540440:intron 30.0%
AATGATAGCAAGAATCACTA+GGG - chr4_1:22663830-22663849 Msa0540440:intron 30.0%
TCTTCGCATATGATTATGAT+AGG - chr4_1:22663875-22663894 Msa0540440:intron 30.0%
ACTCTTACTTGTTCATAACA+TGG + chr4_1:22663945-22663964 None:intergenic 30.0%
AAGTAAGAGTTACCACTAAT+CGG - chr4_1:22663955-22663974 Msa0540440:intron 30.0%
AGACCATGATTAATAAGTGT+AGG - chr4_1:22664039-22664058 Msa0540440:intron 30.0%
TCGTATCTAAGTTCATTCAT+TGG + chr4_1:22664374-22664393 None:intergenic 30.0%
GCCATGATTATGTTATGTTT+AGG - chr4_1:22664552-22664571 Msa0540440:intron 30.0%
GCCTAAACATAACATAATCA+TGG + chr4_1:22664556-22664575 None:intergenic 30.0%
AGAATACACTCTATGTATCA+AGG + chr4_1:22664578-22664597 None:intergenic 30.0%
TGATACATAGAGTGTATTCT+TGG - chr4_1:22664578-22664597 Msa0540440:intron 30.0%
! CTGCTTATCTGAAACAAATA+AGG + chr4_1:22664847-22664866 None:intergenic 30.0%
CTTATTTGTTTCAGATAAGC+AGG - chr4_1:22664845-22664864 Msa0540440:intron 30.0%
AGTTGTAATTTAATGACCCA+AGG + chr4_1:22665153-22665172 None:intergenic 30.0%
GGGTCATTAAATTACAACTA+AGG - chr4_1:22665154-22665173 Msa0540440:intron 30.0%
! CAACAATTAGAACTTTTACC+CGG + chr4_1:22665198-22665217 None:intergenic 30.0%
TTAATTTAGCATTCGACGAT+TGG - chr4_1:22665237-22665256 Msa0540440:intron 30.0%
TATTCAACTTCTTCACTTAC+GGG + chr4_1:22665498-22665517 None:intergenic 30.0%
AACGGAATTATTGTATGCAA+AGG - chr4_1:22665564-22665583 Msa0540440:intron 30.0%
GAATGTAAGTACAAGACTAA+AGG - chr4_1:22665599-22665618 Msa0540440:intron 30.0%
AAGTACAAGACTAAAGGTTA+AGG - chr4_1:22665605-22665624 Msa0540440:intron 30.0%
! GGTTCTAATAATGAATGAGT+TGG - chr4_1:22665719-22665738 Msa0540440:intron 30.0%
!!! TTGTTTTTAAGACGATCGAA+AGG - chr4_1:22665879-22665898 Msa0540440:intron 30.0%
TAATAGCAAAATTACTCCAG+AGG - chr4_1:22666004-22666023 Msa0540440:intron 30.0%
! TTTCTAAGGAAGAAAATGCA+TGG - chr4_1:22666189-22666208 Msa0540440:intron 30.0%
AATGCATGGACAAGTATTAA+CGG - chr4_1:22666203-22666222 Msa0540440:intron 30.0%
AAGTATTAACGGAATCAATC+CGG - chr4_1:22666214-22666233 Msa0540440:intron 30.0%
!!! GTCAAAAAGTTTTAAGGTTC+CGG - chr4_1:22666287-22666306 Msa0540440:intron 30.0%
ATTAAGCAAAACATAGATCC+GGG + chr4_1:22666417-22666436 None:intergenic 30.0%
TTTAGAAAGGTAGACACATA+TGG - chr4_1:22666485-22666504 Msa0540440:intron 30.0%
TTAGAAAGGTAGACACATAT+GGG - chr4_1:22666486-22666505 Msa0540440:intron 30.0%
!!! TGGAATTTTTTTGTAGGTAC+CGG - chr4_1:22666540-22666559 Msa0540440:intron 30.0%
TAATTTAACACATGGGTCTT+TGG + chr4_1:22666709-22666728 None:intergenic 30.0%
TATGATAAGTGTATGTCATG+AGG - chr4_1:22666894-22666913 Msa0540440:intron 30.0%
AATAGACCTTATATTCTCAC+TGG + chr4_1:22666929-22666948 None:intergenic 30.0%
TTCAAGAAGATGATGCTAAT+AGG - chr4_1:22667051-22667070 Msa0540440:intron 30.0%
TCAAGAAGATGATGCTAATA+GGG - chr4_1:22667052-22667071 Msa0540440:intron 30.0%
CTCAAAATGTTAAGTAGGAA+AGG - chr4_1:22667251-22667270 Msa0540440:intron 30.0%
AAGAGAAATACATGTAAGAG+CGG - chr4_1:22667415-22667434 Msa0540440:intron 30.0%
GAATTATTAAAGTGTGGAAC+CGG - chr4_1:22667471-22667490 Msa0540440:intron 30.0%
TAGAATGAGATAATGATGTG+AGG - chr4_1:22667582-22667601 Msa0540440:intron 30.0%
CTTGTCTTACATACATATCT+TGG + chr4_1:22667652-22667671 None:intergenic 30.0%
TCATTTAACAAGTTCGACAT+AGG + chr4_1:22667768-22667787 None:intergenic 30.0%
!! TCGAACTTGTTAAATGATCA+CGG - chr4_1:22667771-22667790 Msa0540440:intron 30.0%
ATCATAATTCGAAATCTTCG+TGG + chr4_1:22667803-22667822 None:intergenic 30.0%
AGGCTATGTTTAGTTATATG+TGG - chr4_1:22668155-22668174 Msa0540440:intron 30.0%
!!! CGAGGACGAAATTTTTTTTA+AGG - chr4_1:22668302-22668321 Msa0540440:intron 30.0%
!!! GGACGAAATTTTTTTTAAGG+GGG - chr4_1:22668305-22668324 Msa0540440:intron 30.0%
!!! GACGAAATTTTTTTTAAGGG+GGG - chr4_1:22668306-22668325 Msa0540440:intron 30.0%
! TGTAAGATGTCAGCTTTATA+CGG - chr4_1:22668424-22668443 Msa0540440:intron 30.0%
! TGAAATTACCATTTTACCCT+TGG + chr4_1:22662644-22662663 None:intergenic 30.0%
ACGTGGAAAGGATATTTAAT+TGG - chr4_1:22662663-22662682 Msa0540440:intron 30.0%
AACTTATCTTGAATCATGGT+TGG + chr4_1:22662815-22662834 None:intergenic 30.0%
ATAAACTTAGGAGATCATGA+GGG + chr4_1:22662843-22662862 None:intergenic 30.0%
TATAAACTTAGGAGATCATG+AGG + chr4_1:22662844-22662863 None:intergenic 30.0%
CTCCTAAGTTTATAAAAGCT+TGG - chr4_1:22662850-22662869 Msa0540440:intron 30.0%
!!! ATAAAAGCTTGGTTTTGCTT+TGG - chr4_1:22662861-22662880 Msa0540440:intron 30.0%
!!! TAAAAGCTTGGTTTTGCTTT+GGG - chr4_1:22662862-22662881 Msa0540440:intron 30.0%
GTTAGAAACAAAGAGAAAGA+TGG - chr4_1:22662981-22663000 Msa0540440:intron 30.0%
AAAGATGGTTTGAAGATTGT+TGG - chr4_1:22662996-22663015 Msa0540440:intron 30.0%
AAGCAAGAAAACAACAAGAT+TGG - chr4_1:22663068-22663087 Msa0540440:intron 30.0%
GTTTAGACAAAGAAAGCAAA+AGG - chr4_1:22668935-22668954 Msa0540440:intron 30.0%
TTCACAAGTATAAAGATGCA+TGG + chr4_1:22669134-22669153 None:intergenic 30.0%
!! GTTAAAAACACCATTTTTGC+AGG - chr4_1:22663399-22663418 Msa0540440:intron 30.0%
GAATTATGGCATGAGTTTAA+CGG - chr4_1:22663747-22663766 Msa0540440:intron 30.0%
AATTATGGCATGAGTTTAAC+GGG - chr4_1:22669589-22669608 Msa0540440:intron 30.0%
AATGATAGCAAGAATCACTA+GGG - chr4_1:22663830-22663849 Msa0540440:intron 30.0%
TCTTCGCATATGATTATGAT+AGG - chr4_1:22663875-22663894 Msa0540440:intron 30.0%
ACTCTTACTTGTTCATAACA+TGG + chr4_1:22663945-22663964 None:intergenic 30.0%
AAGTAAGAGTTACCACTAAT+CGG - chr4_1:22663955-22663974 Msa0540440:intron 30.0%
AGACCATGATTAATAAGTGT+AGG - chr4_1:22664039-22664058 Msa0540440:intron 30.0%
TCGTATCTAAGTTCATTCAT+TGG + chr4_1:22664374-22664393 None:intergenic 30.0%
GCCATGATTATGTTATGTTT+AGG - chr4_1:22664552-22664571 Msa0540440:intron 30.0%
GCCTAAACATAACATAATCA+TGG + chr4_1:22664556-22664575 None:intergenic 30.0%
! CTGCTTATCTGAAACAAATA+AGG + chr4_1:22664847-22664866 None:intergenic 30.0%
CTTATTTGTTTCAGATAAGC+AGG - chr4_1:22664845-22664864 Msa0540440:intron 30.0%
!!! GACCTTTTTAATTTTTGCCT+AGG - chr4_1:22670962-22670981 Msa0540440:five_prime_UTR 30.0%
CTCCTAGGCAAAAATTAAAA+AGG + chr4_1:22670967-22670986 None:intergenic 30.0%
!!! CTTTTTAATTTTTGCCTAGG+AGG - chr4_1:22670965-22670984 Msa0540440:five_prime_UTR 30.0%
! AATAATGTTTGAAACCTCCT+AGG + chr4_1:22670982-22671001 None:intergenic 30.0%
ATTTCGTTTAAGAAATGGAG+AGG + chr4_1:22671058-22671077 None:intergenic 30.0%
TTCCATCATGACAAAGAAAG+GGG - chr4_1:22660520-22660539 Msa0540440:three_prime_UTR 35.0%
ACACTTTATCGACCAAGAAA+AGG - chr4_1:22660607-22660626 Msa0540440:intron 35.0%
! TCTCAAAGATAGCCTTTTCT+TGG + chr4_1:22660622-22660641 None:intergenic 35.0%
! GAATTTTGGATGATGCCATT+TGG - chr4_1:22660692-22660711 Msa0540440:intron 35.0%
TCTCATGTAGAGAAACCAAA+TGG + chr4_1:22660710-22660729 None:intergenic 35.0%
CTTTGCACTGAAGTATAACA+TGG - chr4_1:22660790-22660809 Msa0540440:intron 35.0%
ATATAAGCCCATTTCTTGAG+AGG - chr4_1:22660816-22660835 Msa0540440:intron 35.0%
TATAAGCCCATTTCTTGAGA+GGG - chr4_1:22660817-22660836 Msa0540440:intron 35.0%
TCATATCCCTCTCAAGAAAT+GGG + chr4_1:22660826-22660845 None:intergenic 35.0%
TTCATATCCCTCTCAAGAAA+TGG + chr4_1:22660827-22660846 None:intergenic 35.0%
GGAATCACGGCAATATAATT+GGG - chr4_1:22660885-22660904 Msa0540440:intron 35.0%
TATAATTGGGATACACGTGA+AGG - chr4_1:22660898-22660917 Msa0540440:intron 35.0%
CTTTCTACTTCCACTTCTAA+TGG - chr4_1:22660934-22660953 Msa0540440:intron 35.0%
TGAAGCAAGTACTTCAAAGA+CGG + chr4_1:22661341-22661360 None:intergenic 35.0%
! CAATAACCGATCTGATGTTT+TGG - chr4_1:22661644-22661663 Msa0540440:intron 35.0%
CAAAGACCAAAACATCAGAT+CGG + chr4_1:22661653-22661672 None:intergenic 35.0%
GATATAGAGTTTGTGTACTG+TGG - chr4_1:22661678-22661697 Msa0540440:intron 35.0%
GAAGAATTAGGATAGTTTGG+AGG + chr4_1:22662018-22662037 None:intergenic 35.0%
GGAGAAGAATTAGGATAGTT+TGG + chr4_1:22662021-22662040 None:intergenic 35.0%
GGATTCAACTGGTATGAATA+TGG + chr4_1:22662043-22662062 None:intergenic 35.0%
TATTCATACCAGTTGAATCC+CGG - chr4_1:22662043-22662062 Msa0540440:intron 35.0%
AAATGTTCCATTATCTCACC+GGG + chr4_1:22662064-22662083 None:intergenic 35.0%
TCTGAGTATGCACAACAATT+TGG - chr4_1:22662377-22662396 Msa0540440:intron 35.0%
GTTAATATACCGATACTGTC+AGG + chr4_1:22662509-22662528 None:intergenic 35.0%
! TGTAAGATGTCAGCTTTATG+CGG - chr4_1:22662584-22662603 Msa0540440:intron 35.0%
TCTTAAACACACTTAAGCCA+AGG - chr4_1:22662624-22662643 Msa0540440:intron 35.0%
CTTAAACACACTTAAGCCAA+GGG - chr4_1:22662625-22662644 Msa0540440:intron 35.0%
GGTAAAATGGTAATTTCACG+TGG - chr4_1:22662646-22662665 Msa0540440:intron 35.0%
AATGGTAATTTCACGTGGAA+AGG - chr4_1:22662651-22662670 Msa0540440:intron 35.0%
!! GATCAAACTTTTGGAAGAGT+TGG + chr4_1:22662793-22662812 None:intergenic 35.0%
! TCATGGTTGGATCAAACTTT+TGG + chr4_1:22662802-22662821 None:intergenic 35.0%
!!! AAAAGCTTGGTTTTGCTTTG+GGG - chr4_1:22662863-22662882 Msa0540440:intron 35.0%
!! AGTTAGGGTTTTGATCAAGT+TGG - chr4_1:22662917-22662936 Msa0540440:intron 35.0%
!! TCATGGAAGTTGGTAAATCA+AGG - chr4_1:22663029-22663048 Msa0540440:intron 35.0%
! AGAAAACAACAAGATTGGCT+TGG - chr4_1:22663073-22663092 Msa0540440:intron 35.0%
CAAAGAAAGAAAAAGGAGCA+AGG - chr4_1:22663102-22663121 Msa0540440:intron 35.0%
AAAGATGCATGGCATGAAAA+GGG + chr4_1:22663283-22663302 None:intergenic 35.0%
TAAAGATGCATGGCATGAAA+AGG + chr4_1:22663284-22663303 None:intergenic 35.0%
AAACATCCCAAGACATATTG+TGG + chr4_1:22663362-22663381 None:intergenic 35.0%
! TCTTGGGATGTTTTGTATTG+AGG - chr4_1:22663369-22663388 Msa0540440:intron 35.0%
! ATGGTGAGTAAACACCTTTT+CGG + chr4_1:22663483-22663502 None:intergenic 35.0%
AACATTTAAAGACCATGCCT+TGG + chr4_1:22663675-22663694 None:intergenic 35.0%
AGCATGGAGTAAGAGAATTA+TGG - chr4_1:22663733-22663752 Msa0540440:intron 35.0%
GTAGCAAGCAATAACTAAAG+CGG - chr4_1:22663770-22663789 Msa0540440:intron 35.0%
TAGCAAGCAATAACTAAAGC+GGG - chr4_1:22663771-22663790 Msa0540440:intron 35.0%
GAATGATAGCAAGAATCACT+AGG - chr4_1:22663829-22663848 Msa0540440:intron 35.0%
CTTACTTGTTCATAACATGG+TGG + chr4_1:22663942-22663961 None:intergenic 35.0%
AACTTAATCGAACCGATTAG+TGG + chr4_1:22663970-22663989 None:intergenic 35.0%
ACATACTTGATCGTTTACCT+CGG + chr4_1:22663994-22664013 None:intergenic 35.0%
CCACCTACACTTATTAATCA+TGG + chr4_1:22664045-22664064 None:intergenic 35.0%
CCATGATTAATAAGTGTAGG+TGG - chr4_1:22664042-22664061 Msa0540440:intron 35.0%
! ATTCATTTTACGGATAGTCC+CGG + chr4_1:22664322-22664341 None:intergenic 35.0%
CCAGATGGAAATTACTTCAA+GGG - chr4_1:22664888-22664907 Msa0540440:intron 35.0%
ACGTGCGTTAATATTAGTAC+TGG + chr4_1:22665061-22665080 None:intergenic 35.0%
TTTCTAGATACGTCTGGTAT+GGG - chr4_1:22665088-22665107 Msa0540440:intron 35.0%
TAATTTAATGACCCAAGGCA+CGG + chr4_1:22665148-22665167 None:intergenic 35.0%
AATGTAAGGCATGTTAAGAC+AGG - chr4_1:22665428-22665447 Msa0540440:intron 35.0%
ACAACTCTTACCGAAACTTT+CGG + chr4_1:22665538-22665557 None:intergenic 35.0%
ATGGAATTAGTAAGCTCTCA+GGG - chr4_1:22665646-22665665 Msa0540440:intron 35.0%
TGTTAATGCTTGTCATGCAA+AGG - chr4_1:22665848-22665867 Msa0540440:intron 35.0%
TCGAAAGGAATGATATGCAT+TGG - chr4_1:22665894-22665913 Msa0540440:intron 35.0%
CGAAAGGAATGATATGCATT+GGG - chr4_1:22665895-22665914 Msa0540440:intron 35.0%
! ATTAGCGCAATTTTCGCTAT+TGG + chr4_1:22665988-22666007 None:intergenic 35.0%
AAAAATGAAAATTTCGCCCC+AGG + chr4_1:22666047-22666066 None:intergenic 35.0%
CTTCTAATGTTGCCTTAAAC+CGG + chr4_1:22666236-22666255 None:intergenic 35.0%
GGCAACATTAGAAGTTAATG+CGG - chr4_1:22666242-22666261 Msa0540440:intron 35.0%
! GCTTGGGTCAAAAAGTTTTA+AGG - chr4_1:22666281-22666300 Msa0540440:intron 35.0%
CACTTTATCCATTCATATGC+CGG + chr4_1:22666309-22666328 None:intergenic 35.0%
TTAAGCAAAACATAGATCCG+GGG + chr4_1:22666416-22666435 None:intergenic 35.0%
!! CAGTCGTTACTCTAAAATCA+CGG + chr4_1:22666642-22666661 None:intergenic 35.0%
!!! GTGATTTTAGAGTAACGACT+GGG - chr4_1:22666641-22666660 Msa0540440:intron 35.0%
!!! TGATTTTAGAGTAACGACTG+GGG - chr4_1:22666642-22666661 Msa0540440:intron 35.0%
ACATAGTATGCGAGAATACA+AGG - chr4_1:22666784-22666803 Msa0540440:intron 35.0%
ACTCAACCAGTGAGAATATA+AGG - chr4_1:22666920-22666939 Msa0540440:intron 35.0%
CTATGAGATTCAATCTTGCA+AGG - chr4_1:22666984-22667003 Msa0540440:intron 35.0%
TATTGTGAGGTGCATGTTTA+TGG - chr4_1:22667007-22667026 Msa0540440:intron 35.0%
CAAGAAGATGATGCTAATAG+GGG - chr4_1:22667053-22667072 Msa0540440:intron 35.0%
TAAAGTTCCGACAGTAATCA+TGG - chr4_1:22667169-22667188 Msa0540440:intron 35.0%
CCATATTCCATGATTACTGT+CGG + chr4_1:22667179-22667198 None:intergenic 35.0%
ATCAGTCATGAAAAGGGATA+AGG - chr4_1:22667285-22667304 Msa0540440:intron 35.0%
ATGAAAAGGGATAAGGTATG+TGG - chr4_1:22667292-22667311 Msa0540440:intron 35.0%
! TCCTTTTTGTGACTCAAAGT+AGG - chr4_1:22667444-22667463 Msa0540440:intron 35.0%
ACCTACTTTGAGTCACAAAA+AGG + chr4_1:22667448-22667467 None:intergenic 35.0%
TAGTAATATGTGATCGCAAC+CGG - chr4_1:22667525-22667544 Msa0540440:intron 35.0%
AGATAATGATGTGAGGATCA+AGG - chr4_1:22667589-22667608 Msa0540440:intron 35.0%
GATAATGATGTGAGGATCAA+GGG - chr4_1:22667590-22667609 Msa0540440:intron 35.0%
TCATCAAATCTTACCTCACA+TGG + chr4_1:22668035-22668054 None:intergenic 35.0%
ATACGAGTCATCCATGAATT+TGG - chr4_1:22668102-22668121 Msa0540440:intron 35.0%
TACGAGTCATCCATGAATTT+GGG - chr4_1:22668103-22668122 Msa0540440:intron 35.0%
TCTTATTGCACCCAAATTCA+TGG + chr4_1:22668116-22668135 None:intergenic 35.0%
GAATTTGGGTGCAATAAGAA+TGG - chr4_1:22668117-22668136 Msa0540440:intron 35.0%
TCCATTCATATCTATCCGAA+GGG + chr4_1:22668215-22668234 None:intergenic 35.0%
TTCCATTCATATCTATCCGA+AGG + chr4_1:22668216-22668235 None:intergenic 35.0%
TAGTCGATCTCTAAATTTCG+AGG - chr4_1:22668284-22668303 Msa0540440:intron 35.0%
GTTAATATACCGATACTGTC+AGG + chr4_1:22662509-22662528 None:intergenic 35.0%
! GTAAGATGTCAGCTTTATAC+GGG - chr4_1:22668425-22668444 Msa0540440:intron 35.0%
! GCTTTATACGGGAAAAGTAT+CGG - chr4_1:22668436-22668455 Msa0540440:intron 35.0%
GGTAAAATGGTAATTTCACG+TGG - chr4_1:22662646-22662665 Msa0540440:intron 35.0%
AATGGTAATTTCACGTGGAA+AGG - chr4_1:22662651-22662670 Msa0540440:intron 35.0%
!! GATCAAACTTTTGGAAGAGT+TGG + chr4_1:22662793-22662812 None:intergenic 35.0%
! TCATGGTTGGATCAAACTTT+TGG + chr4_1:22662802-22662821 None:intergenic 35.0%
!!! AAAAGCTTGGTTTTGCTTTG+GGG - chr4_1:22662863-22662882 Msa0540440:intron 35.0%
!! AGTTAGGGTTTTGATCAAGT+TGG - chr4_1:22662917-22662936 Msa0540440:intron 35.0%
!! TCATGGAAGTTGGTAAATCA+AGG - chr4_1:22663029-22663048 Msa0540440:intron 35.0%
!!! TGTTGTTTTCTTGCTTTCCA+AGG + chr4_1:22663064-22663083 None:intergenic 35.0%
! AGAAAACAACAAGATTGGCT+TGG - chr4_1:22663073-22663092 Msa0540440:intron 35.0%
TAAACACATAATCCCAAGGT+GGG + chr4_1:22669047-22669066 None:intergenic 35.0%
TTAAACACATAATCCCAAGG+TGG + chr4_1:22669048-22669067 None:intergenic 35.0%
AGCTTAAACACATAATCCCA+AGG + chr4_1:22669051-22669070 None:intergenic 35.0%
AAAGATGCATGGCATGAAAA+GGG + chr4_1:22663283-22663302 None:intergenic 35.0%
TAAAGATGCATGGCATGAAA+AGG + chr4_1:22663284-22663303 None:intergenic 35.0%
AAACATCCCAAGACATATTG+TGG + chr4_1:22663362-22663381 None:intergenic 35.0%
! TCTTGGGATGTTTTGTATTG+AGG - chr4_1:22663369-22663388 Msa0540440:intron 35.0%
AAAGAATGCTCGAAGAAGAT+TGG + chr4_1:22669464-22669483 None:intergenic 35.0%
AACATTTAAAGACCATGCCT+TGG + chr4_1:22663675-22663694 None:intergenic 35.0%
GTAGCAAGCAATAACTAAAG+CGG - chr4_1:22663770-22663789 Msa0540440:intron 35.0%
TAGCAAGCAATAACTAAAGC+GGG - chr4_1:22663771-22663790 Msa0540440:intron 35.0%
GAATGATAGCAAGAATCACT+AGG - chr4_1:22663829-22663848 Msa0540440:intron 35.0%
CTTACTTGTTCATAACATGG+TGG + chr4_1:22663942-22663961 None:intergenic 35.0%
AACTTAATCGAACCGATTAG+TGG + chr4_1:22663970-22663989 None:intergenic 35.0%
ACATACTTGATCGTTTACCT+CGG + chr4_1:22663994-22664013 None:intergenic 35.0%
CCACCTACACTTATTAATCA+TGG + chr4_1:22664045-22664064 None:intergenic 35.0%
CCATGATTAATAAGTGTAGG+TGG - chr4_1:22664042-22664061 Msa0540440:intron 35.0%
! ATTCATTTTACGGATAGTCC+CGG + chr4_1:22664322-22664341 None:intergenic 35.0%
ACGTGCGTTAATATTAGTAC+TGG + chr4_1:22665061-22665080 None:intergenic 35.0%
TTTCTAGATACGTCTGGTAT+GGG - chr4_1:22665088-22665107 Msa0540440:intron 35.0%
TTCCCCTTTCTTTGTCATGA+TGG + chr4_1:22660525-22660544 None:intergenic 40.0%
CATGACAAAGAAAGGGGAAA+AGG - chr4_1:22660526-22660545 Msa0540440:three_prime_UTR 40.0%
TCTCTACATGAGAGAAGAAG+TGG - chr4_1:22660717-22660736 Msa0540440:intron 40.0%
GAATTTGCAGAACCTGTTGA+CGG - chr4_1:22660743-22660762 Msa0540440:intron 40.0%
AATTTGCAGAACCTGTTGAC+GGG - chr4_1:22660744-22660763 Msa0540440:intron 40.0%
GGGAATCACGGCAATATAAT+TGG - chr4_1:22660884-22660903 Msa0540440:intron 40.0%
ACGGTCTATTCCATTAGAAG+TGG + chr4_1:22660947-22660966 None:intergenic 40.0%
CACAACCATGTAACAAGAGT+CGG - chr4_1:22661000-22661019 Msa0540440:intron 40.0%
ATTCTAGCATACATGTAGGC+CGG - chr4_1:22661296-22661315 Msa0540440:intron 40.0%
! TGCTACTGTCATTAACTTGG+TGG - chr4_1:22661444-22661463 Msa0540440:intron 40.0%
! GTCATTAACTTGGTGGCATT+TGG - chr4_1:22661451-22661470 Msa0540440:intron 40.0%
!!! CGATCTGATGTTTTGGTCTT+TGG - chr4_1:22661651-22661670 Msa0540440:intron 40.0%
TTGTGTAGACTGCCACTATT+TGG + chr4_1:22662146-22662165 None:intergenic 40.0%
GCTATATCCTTAAGGGACAT+AGG + chr4_1:22662323-22662342 None:intergenic 40.0%
GAGTATGCACAACAATTTGG+TGG - chr4_1:22662380-22662399 Msa0540440:intron 40.0%
! TATGCACAACAATTTGGTGG+AGG - chr4_1:22662383-22662402 Msa0540440:intron 40.0%
!! GGAACATTCAGCTCTAAGTA+TGG - chr4_1:22662404-22662423 Msa0540440:intron 40.0%
!! TCAGCTCTAAGTATGGAGAA+TGG - chr4_1:22662411-22662430 Msa0540440:intron 40.0%
AATATACCGATACTGTCAGG+CGG + chr4_1:22662506-22662525 None:intergenic 40.0%
AATTCATCTGACACGGTCAA+CGG + chr4_1:22662531-22662550 None:intergenic 40.0%
! GTAAGATGTCAGCTTTATGC+GGG - chr4_1:22662585-22662604 Msa0540440:intron 40.0%
! GCTTTATGCGGGAAAAGTAT+CGG - chr4_1:22662596-22662615 Msa0540440:intron 40.0%
CACTTAAGCCAAGGGTAAAA+TGG - chr4_1:22662633-22662652 Msa0540440:intron 40.0%
CTTTCATCCTTTCTCTCTCT+AGG - chr4_1:22662710-22662729 Msa0540440:intron 40.0%
CTTGATCTTGTGCAAGCTAT+GGG - chr4_1:22662949-22662968 Msa0540440:intron 40.0%
TGCAAGCTATGGGTTCTTTA+TGG - chr4_1:22662959-22662978 Msa0540440:intron 40.0%
! TTGAAGATTGTTGGTGAGCT+AGG - chr4_1:22663005-22663024 Msa0540440:intron 40.0%
! TGAAGATTGTTGGTGAGCTA+GGG - chr4_1:22663006-22663025 Msa0540440:intron 40.0%
!! TGGAAGTTGGTAAATCAAGG+AGG - chr4_1:22663032-22663051 Msa0540440:intron 40.0%
AATCAAGGAGGAAGAAGCTT+TGG - chr4_1:22663044-22663063 Msa0540440:intron 40.0%
!! GGTTTGGTTTGTTGATGCTT+AGG - chr4_1:22663131-22663150 Msa0540440:intron 40.0%
! TGTTGATGCTTAGGAGCTTT+TGG - chr4_1:22663140-22663159 Msa0540440:intron 40.0%
! GTTGATGCTTAGGAGCTTTT+GGG - chr4_1:22663141-22663160 Msa0540440:intron 40.0%
GAATCAAGTGCAATCATGCT+TGG - chr4_1:22663163-22663182 Msa0540440:intron 40.0%
GAAACACATAATCCCAAGGT+GGG + chr4_1:22663207-22663226 None:intergenic 40.0%
TGAAACACATAATCCCAAGG+TGG + chr4_1:22663208-22663227 None:intergenic 40.0%
AGCTGAAACACATAATCCCA+AGG + chr4_1:22663211-22663230 None:intergenic 40.0%
! TTGTGGTGCTAGAAGTCATA+TGG + chr4_1:22663345-22663364 None:intergenic 40.0%
TCTAGCACCACAATATGTCT+TGG - chr4_1:22663352-22663371 Msa0540440:intron 40.0%
CTAGCACCACAATATGTCTT+GGG - chr4_1:22663353-22663372 Msa0540440:intron 40.0%
!! AAACACCATTTTTGCAGGTC+TGG - chr4_1:22663404-22663423 Msa0540440:intron 40.0%
TGGACTGTTATAACTCGCAA+CGG - chr4_1:22663424-22663443 Msa0540440:intron 40.0%
AAAGAATGCTCGAAGAAGAC+TGG + chr4_1:22663623-22663642 None:intergenic 40.0%
CCTTGGAATCATGTATTGAG+GGG + chr4_1:22663658-22663677 None:intergenic 40.0%
GCCTTGGAATCATGTATTGA+GGG + chr4_1:22663659-22663678 None:intergenic 40.0%
TGCCTTGGAATCATGTATTG+AGG + chr4_1:22663660-22663679 None:intergenic 40.0%
CAATACATGATTCCAAGGCA+TGG - chr4_1:22663660-22663679 Msa0540440:intron 40.0%
CAAGAATCACTAGGGTGATT+AGG - chr4_1:22663838-22663857 Msa0540440:intron 40.0%
!! ACACCTACGTCTTGTTTACT+CGG + chr4_1:22664151-22664170 None:intergenic 40.0%
TACGTACATCGGTCATGTAT+GGG - chr4_1:22664274-22664293 Msa0540440:intron 40.0%
GTCATGTATGGGATTGTTCT+CGG - chr4_1:22664285-22664304 Msa0540440:intron 40.0%
TCATGTATGGGATTGTTCTC+GGG - chr4_1:22664286-22664305 Msa0540440:intron 40.0%
! TTCATTTTACGGATAGTCCC+GGG + chr4_1:22664321-22664340 None:intergenic 40.0%
ATGATACCGATGACGATCTT+AGG - chr4_1:22664500-22664519 Msa0540440:intron 40.0%
ATTCTAAACCGGACGATTAG+GGG + chr4_1:22664529-22664548 None:intergenic 40.0%
GATTCTAAACCGGACGATTA+GGG + chr4_1:22664530-22664549 None:intergenic 40.0%
ATCATGGCACGATTCTAAAC+CGG + chr4_1:22664540-22664559 None:intergenic 40.0%
AGAGTGTATTCTTGGCAATG+CGG - chr4_1:22664586-22664605 Msa0540440:intron 40.0%
TTCACTTCCTATACGTGTCA+TGG + chr4_1:22664633-22664652 None:intergenic 40.0%
TAGGCTATAGGCAACCTTAA+GGG + chr4_1:22664782-22664801 None:intergenic 40.0%
GCAGGATGTTTATGCATGAT+CGG - chr4_1:22664863-22664882 Msa0540440:intron 40.0%
GCCAGATGGAAATTACTTCA+AGG - chr4_1:22664887-22664906 Msa0540440:intron 40.0%
CCCTTGAAGTAATTTCCATC+TGG + chr4_1:22664891-22664910 None:intergenic 40.0%
CTTTCTAGATACGTCTGGTA+TGG - chr4_1:22665087-22665106 Msa0540440:intron 40.0%
! TCTGGTATGGGTGTTACAAT+TGG - chr4_1:22665100-22665119 Msa0540440:intron 40.0%
GTTACAATTGGTATCAGAGC+AGG - chr4_1:22665112-22665131 Msa0540440:intron 40.0%
TTAGCATTCGACGATTGGAA+TGG - chr4_1:22665242-22665261 Msa0540440:intron 40.0%
TCACATACTTCATTCCTCCT+GGG + chr4_1:22665289-22665308 None:intergenic 40.0%
ATCACATACTTCATTCCTCC+TGG + chr4_1:22665290-22665309 None:intergenic 40.0%
AGGAGGAATGAAGTATGTGA+TGG - chr4_1:22665289-22665308 Msa0540440:intron 40.0%
AAGAGTTTGATCGTGCCAAA+AGG - chr4_1:22665364-22665383 Msa0540440:intron 40.0%
! TTAGTTCACAAGCCACCTTT+TGG + chr4_1:22665382-22665401 None:intergenic 40.0%
CTTAACATGCCTTACATTCC+CGG + chr4_1:22665426-22665445 None:intergenic 40.0%
CTAACCATGACCGAAAGTTT+CGG - chr4_1:22665525-22665544 Msa0540440:intron 40.0%
GTTTCGGTAAGAGTTGTTGT+TGG - chr4_1:22665541-22665560 Msa0540440:intron 40.0%
! GGTAAGAGTTGTTGTTGGAA+CGG - chr4_1:22665546-22665565 Msa0540440:intron 40.0%
GAGAAGTCGACATATGTTGA+TGG - chr4_1:22665627-22665646 Msa0540440:intron 40.0%
GATGGAATTAGTAAGCTCTC+AGG - chr4_1:22665645-22665664 Msa0540440:intron 40.0%
CAGGGATTGAGATATGAGAA+CGG - chr4_1:22665664-22665683 Msa0540440:intron 40.0%
! ATAAGTTGAGCCGTTCTTAG+CGG - chr4_1:22665749-22665768 Msa0540440:intron 40.0%
GATATGCATTGGGATACTTG+AGG - chr4_1:22665905-22665924 Msa0540440:intron 40.0%
ATTTCGCTAATAGCGAACCT+GGG - chr4_1:22666027-22666046 Msa0540440:intron 40.0%
! AAACCTGTCATTTCGTCTCT+AGG - chr4_1:22666072-22666091 Msa0540440:intron 40.0%
! AACCTGTCATTTCGTCTCTA+GGG - chr4_1:22666073-22666092 Msa0540440:intron 40.0%
TAGGGTCAGTAGTAGCTATT+GGG - chr4_1:22666091-22666110 Msa0540440:intron 40.0%
GTCACACCCTATGATTTCTA+AGG - chr4_1:22666175-22666194 Msa0540440:intron 40.0%
AACGGAATCAATCCGGTTTA+AGG - chr4_1:22666221-22666240 Msa0540440:intron 40.0%
TTAAGGTTCCGGCATATGAA+TGG - chr4_1:22666298-22666317 Msa0540440:intron 40.0%
CGGCATATGAATGGATAAAG+TGG - chr4_1:22666307-22666326 Msa0540440:intron 40.0%
AAGAAAGTTATGAGTACCCC+CGG - chr4_1:22666396-22666415 Msa0540440:intron 40.0%
TAAGCAAAACATAGATCCGG+GGG + chr4_1:22666415-22666434 None:intergenic 40.0%
!!! CGTGATTTTAGAGTAACGAC+TGG - chr4_1:22666640-22666659 Msa0540440:intron 40.0%
!! CAATCTTGCAAGGTATTGTG+AGG - chr4_1:22666994-22667013 Msa0540440:intron 40.0%
TGAAGTTTCAGTCGTCTCAA+GGG - chr4_1:22667085-22667104 Msa0540440:intron 40.0%
GTCTCAAGGGATTAGGATAT+TGG - chr4_1:22667098-22667117 Msa0540440:intron 40.0%
! GGATATTGGTTAAAGCCAAC+TGG - chr4_1:22667112-22667131 Msa0540440:intron 40.0%
! TATTGGTTAAAGCCAACTGG+TGG - chr4_1:22667115-22667134 Msa0540440:intron 40.0%
ATTGGTTAAAGCCAACTGGT+GGG - chr4_1:22667116-22667135 Msa0540440:intron 40.0%
CCGACAGTAATCATGGAATA+TGG - chr4_1:22667176-22667195 Msa0540440:intron 40.0%
GACTCCAACTAAGTATGACA+AGG - chr4_1:22667319-22667338 Msa0540440:intron 40.0%
CCTTCCTTGTCATACTTAGT+TGG + chr4_1:22667326-22667345 None:intergenic 40.0%
CCAACTAAGTATGACAAGGA+AGG - chr4_1:22667323-22667342 Msa0540440:intron 40.0%
AAATGGGTAGTAAGGGACTT+TGG - chr4_1:22667841-22667860 Msa0540440:intron 40.0%
! TCGTATAACTTGTCGTAGAG+AGG + chr4_1:22668088-22668107 None:intergenic 40.0%
! GTGGATTAAGGAACAAGATG+AGG - chr4_1:22668174-22668193 Msa0540440:intron 40.0%
ACATGAAGCGATAAACCCTT+CGG - chr4_1:22668197-22668216 Msa0540440:intron 40.0%
ACCCTTCGGATAGATATGAA+TGG - chr4_1:22668211-22668230 Msa0540440:intron 40.0%
AATATACCGATACTGTCAGG+CGG + chr4_1:22662506-22662525 None:intergenic 40.0%
AATTCATCTGACACGGTCAA+CGG + chr4_1:22662531-22662550 None:intergenic 40.0%
TCTTAAACACGCTTAAGCCA+AGG - chr4_1:22668464-22668483 Msa0540440:intron 40.0%
CTTAAACACGCTTAAGCCAA+GGG - chr4_1:22668465-22668484 Msa0540440:intron 40.0%
CTTGATCTTGTGCAAGCTAT+GGG - chr4_1:22662949-22662968 Msa0540440:intron 40.0%
TGCAAGCTATGGGTTCTTTA+TGG - chr4_1:22662959-22662978 Msa0540440:intron 40.0%
! TTGAAGATTGTTGGTGAGCT+AGG - chr4_1:22663005-22663024 Msa0540440:intron 40.0%
! TGAAGATTGTTGGTGAGCTA+GGG - chr4_1:22663006-22663025 Msa0540440:intron 40.0%
!! TGGAAGTTGGTAAATCAAGG+AGG - chr4_1:22663032-22663051 Msa0540440:intron 40.0%
CAAAGAAAGCAAAAGGAGCA+AGG - chr4_1:22668942-22668961 Msa0540440:intron 40.0%
!! GGTTTGGTTTGTTGATGCTT+AGG - chr4_1:22663131-22663150 Msa0540440:intron 40.0%
! TGTTGATGCTTAGGAGCTTT+TGG - chr4_1:22663140-22663159 Msa0540440:intron 40.0%
! GTTGATGCTTAGGAGCTTTT+GGG - chr4_1:22663141-22663160 Msa0540440:intron 40.0%
GAATCAAGTGCAATCATGCT+TGG - chr4_1:22663163-22663182 Msa0540440:intron 40.0%
! TTGTGGTGCTAGAAGTCATA+TGG + chr4_1:22663345-22663364 None:intergenic 40.0%
TCTAGCACCACAATATGTCT+TGG - chr4_1:22663352-22663371 Msa0540440:intron 40.0%
CTAGCACCACAATATGTCTT+GGG - chr4_1:22663353-22663372 Msa0540440:intron 40.0%
!! AAACACCATTTTTGCAGGTC+TGG - chr4_1:22663404-22663423 Msa0540440:intron 40.0%
TGGACTGTTATAACTCGCAA+CGG - chr4_1:22663424-22663443 Msa0540440:intron 40.0%
CCTTGGAATCATGTATTGAG+GGG + chr4_1:22663658-22663677 None:intergenic 40.0%
GCCTTGGAATCATGTATTGA+GGG + chr4_1:22663659-22663678 None:intergenic 40.0%
TGCCTTGGAATCATGTATTG+AGG + chr4_1:22663660-22663679 None:intergenic 40.0%
CAATACATGATTCCAAGGCA+TGG - chr4_1:22663660-22663679 Msa0540440:intron 40.0%
AGCATGGCGTAAGAGAATTA+TGG - chr4_1:22669574-22669593 Msa0540440:intron 40.0%
CAAGAATCACTAGGGTGATT+AGG - chr4_1:22663838-22663857 Msa0540440:intron 40.0%
!! ACACCTACGTCTTGTTTACT+CGG + chr4_1:22664151-22664170 None:intergenic 40.0%
TACGTACATCGGTCATGTAT+GGG - chr4_1:22664274-22664293 Msa0540440:intron 40.0%
GTCATGTATGGGATTGTTCT+CGG - chr4_1:22664285-22664304 Msa0540440:intron 40.0%
TCATGTATGGGATTGTTCTC+GGG - chr4_1:22664286-22664305 Msa0540440:intron 40.0%
! TTCATTTTACGGATAGTCCC+GGG + chr4_1:22664321-22664340 None:intergenic 40.0%
ATGATACCGATGACGATCTT+AGG - chr4_1:22664500-22664519 Msa0540440:intron 40.0%
ATTCTAAACCGGACGATTAG+GGG + chr4_1:22664529-22664548 None:intergenic 40.0%
GATTCTAAACCGGACGATTA+GGG + chr4_1:22664530-22664549 None:intergenic 40.0%
ATCATGGCACGATTCTAAAC+CGG + chr4_1:22664540-22664559 None:intergenic 40.0%
AGAGTGTATTCTTGGCAATG+CGG - chr4_1:22664586-22664605 Msa0540440:intron 40.0%
TTCACTTCCTATACGTGTCA+TGG + chr4_1:22664633-22664652 None:intergenic 40.0%
GCAGGATGTTTATGCATGAT+CGG - chr4_1:22664863-22664882 Msa0540440:intron 40.0%
CCCTTGAAGTAATTTCCATC+CGG + chr4_1:22664891-22664910 None:intergenic 40.0%
CCGGATGGAAATTACTTCAA+GGG - chr4_1:22670712-22670731 Msa0540440:five_prime_UTR 40.0%
CTTTCTAGATACGTCTGGTA+TGG - chr4_1:22665087-22665106 Msa0540440:intron 40.0%
ATTTGCAGAACCTGTTGACG+GGG - chr4_1:22660745-22660764 Msa0540440:intron 45.0%
CTTGAGAGGGATATGAACCA+CGG - chr4_1:22660830-22660849 Msa0540440:intron 45.0%
AGTCTCCGACTCTTGTTACA+TGG + chr4_1:22661008-22661027 None:intergenic 45.0%
TTCAGTGAGTTCACCAACAG+TGG + chr4_1:22661190-22661209 None:intergenic 45.0%
GTGAACTCACTGAAGCAATG+TGG - chr4_1:22661196-22661215 Msa0540440:intron 45.0%
TGAAGCAATGTGGCCAATAG+AGG - chr4_1:22661206-22661225 Msa0540440:intron 45.0%
TAGAGTTTGTGTACTGTGGC+AGG - chr4_1:22661682-22661701 Msa0540440:intron 45.0%
! GCAGGTTAATCATGCCCTTT+TGG - chr4_1:22661700-22661719 Msa0540440:intron 45.0%
TTATCTCACCGGGATTCAAC+TGG + chr4_1:22662054-22662073 None:intergenic 45.0%
GTTGAATCCCGGTGAGATAA+TGG - chr4_1:22662054-22662073 Msa0540440:intron 45.0%
TTATGGCAGTAAGGGGAATG+AGG - chr4_1:22662241-22662260 Msa0540440:intron 45.0%
CTCACAACCTATGTCCCTTA+AGG - chr4_1:22662313-22662332 Msa0540440:intron 45.0%
CTCTAAGTATGGAGAATGGC+AGG - chr4_1:22662415-22662434 Msa0540440:intron 45.0%
AATGGCAGGAGTTCACATCT+TGG - chr4_1:22662429-22662448 Msa0540440:intron 45.0%
ATGGCAGGAGTTCACATCTT+GGG - chr4_1:22662430-22662449 Msa0540440:intron 45.0%
AATATCCCGCCTGACAGTAT+CGG - chr4_1:22662497-22662516 Msa0540440:intron 45.0%
ATATACCGATACTGTCAGGC+GGG + chr4_1:22662505-22662524 None:intergenic 45.0%
CAAGAAGCCTAGAGAGAGAA+AGG + chr4_1:22662720-22662739 None:intergenic 45.0%
GCGTGGAACAAAAGAGAAGA+AGG + chr4_1:22662756-22662775 None:intergenic 45.0%
TGGAAGAGTTGGAGAAGAGA+GGG + chr4_1:22662782-22662801 None:intergenic 45.0%
TTGGAAGAGTTGGAGAAGAG+AGG + chr4_1:22662783-22662802 None:intergenic 45.0%
GCTTGATCTTGTGCAAGCTA+TGG - chr4_1:22662948-22662967 Msa0540440:intron 45.0%
AGAAAAAGGAGCAAGGAGCT+AGG - chr4_1:22663109-22663128 Msa0540440:intron 45.0%
GAAAAAGGAGCAAGGAGCTA+GGG - chr4_1:22663110-22663129 Msa0540440:intron 45.0%
TCCTTAGATAGTTCCCACCT+TGG - chr4_1:22663191-22663210 Msa0540440:intron 45.0%
CCTTAGATAGTTCCCACCTT+GGG - chr4_1:22663192-22663211 Msa0540440:intron 45.0%
ACAGTCCAGACCTGCAAAAA+TGG + chr4_1:22663412-22663431 None:intergenic 45.0%
! GTGAGTAAACACCTTTTCGG+TGG + chr4_1:22663480-22663499 None:intergenic 45.0%
CCCCTCAATACATGATTCCA+AGG - chr4_1:22663655-22663674 Msa0540440:intron 45.0%
AGTTCTCGACTACTATGTCG+AGG + chr4_1:22663808-22663827 None:intergenic 45.0%
! TCGGTTCGATTAAGTTTCCG+AGG - chr4_1:22663974-22663993 Msa0540440:intron 45.0%
! TGTCTCTTGCTATCCACATC+AGG - chr4_1:22664067-22664086 Msa0540440:intron 45.0%
! GTCTCTTGCTATCCACATCA+GGG - chr4_1:22664068-22664087 Msa0540440:intron 45.0%
! TCTCTTGCTATCCACATCAG+GGG - chr4_1:22664069-22664088 Msa0540440:intron 45.0%
ATCCACATCAGGGGGATAAA+AGG - chr4_1:22664078-22664097 Msa0540440:intron 45.0%
TCCACATCAGGGGGATAAAA+GGG - chr4_1:22664079-22664098 Msa0540440:intron 45.0%
TGAGAACGATTCAAGCCGTA+AGG - chr4_1:22664112-22664131 Msa0540440:intron 45.0%
GAGAACGATTCAAGCCGTAA+GGG - chr4_1:22664113-22664132 Msa0540440:intron 45.0%
! TTGTTTACTCGGTGACATGC+GGG + chr4_1:22664140-22664159 None:intergenic 45.0%
! CTTGTTTACTCGGTGACATG+CGG + chr4_1:22664141-22664160 None:intergenic 45.0%
TCACCGAGTAAACAAGACGT+AGG - chr4_1:22664145-22664164 Msa0540440:intron 45.0%
CATGACCGATGTACGTACAT+CGG + chr4_1:22664271-22664290 None:intergenic 45.0%
GTACGTACATCGGTCATGTA+TGG - chr4_1:22664273-22664292 Msa0540440:intron 45.0%
CATGTATGGGATTGTTCTCG+GGG - chr4_1:22664287-22664306 Msa0540440:intron 45.0%
GGGAAACCTAAGATCGTCAT+CGG + chr4_1:22664509-22664528 None:intergenic 45.0%
TTAGGTTTCCCCTAATCGTC+CGG - chr4_1:22664518-22664537 Msa0540440:intron 45.0%
CGATTCTAAACCGGACGATT+AGG + chr4_1:22664531-22664550 None:intergenic 45.0%
ACTTCCTATACGTGTCATGG+CGG + chr4_1:22664630-22664649 None:intergenic 45.0%
TGGGGACTTGCATACTTAGA+CGG + chr4_1:22664703-22664722 None:intergenic 45.0%
CGGTTGATTATACGTGTGTG+GGG + chr4_1:22664721-22664740 None:intergenic 45.0%
CCGGTTGATTATACGTGTGT+GGG + chr4_1:22664722-22664741 None:intergenic 45.0%
CCCACACACGTATAATCAAC+CGG - chr4_1:22664719-22664738 Msa0540440:intron 45.0%
GTGTCTACAATACAACCTGC+CGG + chr4_1:22664741-22664760 None:intergenic 45.0%
CAGGTTGTATTGTAGACACG+TGG - chr4_1:22664742-22664761 Msa0540440:intron 45.0%
CAACCTTAAGGGGAAACCTA+CGG + chr4_1:22664771-22664790 None:intergenic 45.0%
AGGCTATAGGCAACCTTAAG+GGG + chr4_1:22664781-22664800 None:intergenic 45.0%
CTAGGCTATAGGCAACCTTA+AGG + chr4_1:22664783-22664802 None:intergenic 45.0%
CTTAAGGTTGCCTATAGCCT+AGG - chr4_1:22664781-22664800 Msa0540440:intron 45.0%
GCCTATAGCCTAGGATTTAG+CGG - chr4_1:22664790-22664809 Msa0540440:intron 45.0%
TCCGCTAAATCCTAGGCTAT+AGG + chr4_1:22664794-22664813 None:intergenic 45.0%
AGTGAGTTCCGCTAAATCCT+AGG + chr4_1:22664801-22664820 None:intergenic 45.0%
GCAGGGCGATATGAACATTA+AGG - chr4_1:22664926-22664945 Msa0540440:intron 45.0%
CCAGACGTATCTAGAAAGTC+TGG + chr4_1:22665085-22665104 None:intergenic 45.0%
CCAGACTTTCTAGATACGTC+TGG - chr4_1:22665082-22665101 Msa0540440:intron 45.0%
!! AACTAAGGTAGTGGGACCAT+TGG - chr4_1:22665169-22665188 Msa0540440:intron 45.0%
!! ACTAAGGTAGTGGGACCATT+GGG - chr4_1:22665170-22665189 Msa0540440:intron 45.0%
! AACTTTTACCCGGAACCCAA+TGG + chr4_1:22665188-22665207 None:intergenic 45.0%
! AGTATGTGATGGAGATGCAC+TGG - chr4_1:22665300-22665319 Msa0540440:intron 45.0%
AGTTTGATCGTGCCAAAAGG+TGG - chr4_1:22665367-22665386 Msa0540440:intron 45.0%
CTTACCGAAACTTTCGGTCA+TGG + chr4_1:22665532-22665551 None:intergenic 45.0%
TCGCTATTAGCGAAATCCTC+TGG + chr4_1:22666023-22666042 None:intergenic 45.0%
GATTTCGCTAATAGCGAACC+TGG - chr4_1:22666026-22666045 Msa0540440:intron 45.0%
TTTCGCTAATAGCGAACCTG+GGG - chr4_1:22666028-22666047 Msa0540440:intron 45.0%
CTAGGGTCAGTAGTAGCTAT+TGG - chr4_1:22666090-22666109 Msa0540440:intron 45.0%
AGGGTCAGTAGTAGCTATTG+GGG - chr4_1:22666092-22666111 Msa0540440:intron 45.0%
CAAGAGTTGACGAAGAGCTT+GGG - chr4_1:22666265-22666284 Msa0540440:intron 45.0%
ATACACGTGCATGAGATGGA+AGG - chr4_1:22666330-22666349 Msa0540440:intron 45.0%
TGCATGAGATGGAAGGTAAG+TGG - chr4_1:22666337-22666356 Msa0540440:intron 45.0%
GAGATGGAAGGTAAGTGGTA+AGG - chr4_1:22666342-22666361 Msa0540440:intron 45.0%
GGTAGACACATATGGGTGAT+TGG - chr4_1:22666493-22666512 Msa0540440:intron 45.0%
TCTACGTGAGTCGTAACAAC+CGG + chr4_1:22666562-22666581 None:intergenic 45.0%
TTGTTACGACTCACGTAGAG+TGG - chr4_1:22666563-22666582 Msa0540440:intron 45.0%
TGTTACGACTCACGTAGAGT+GGG - chr4_1:22666564-22666583 Msa0540440:intron 45.0%
TAAACTCACCGGAACTAAGG+TGG - chr4_1:22666588-22666607 Msa0540440:intron 45.0%
AAACTCACCGGAACTAAGGT+GGG - chr4_1:22666589-22666608 Msa0540440:intron 45.0%
GTGTTATCCCACCTTAGTTC+CGG + chr4_1:22666599-22666618 None:intergenic 45.0%
GAGGTGCATGTTTATGGCAA+TGG - chr4_1:22667013-22667032 Msa0540440:intron 45.0%
GTGAAGTTTCAGTCGTCTCA+AGG - chr4_1:22667084-22667103 Msa0540440:intron 45.0%
TTCAGTCGTCTCAAGGGATT+AGG - chr4_1:22667091-22667110 Msa0540440:intron 45.0%
!! AGCCTTCGTTAGAAGCACTA+TGG - chr4_1:22667213-22667232 Msa0540440:intron 45.0%
!! GCCTTCGTTAGAAGCACTAT+GGG - chr4_1:22667214-22667233 Msa0540440:intron 45.0%
TCCCATAGTGCTTCTAACGA+AGG + chr4_1:22667218-22667237 None:intergenic 45.0%
TAAACCGTGAGTTATGCACG+AGG - chr4_1:22667729-22667748 Msa0540440:intron 45.0%
ACTTCCTCGTGCATAACTCA+CGG + chr4_1:22667736-22667755 None:intergenic 45.0%
AACTTTGGTACTTGGGTCCT+TGG + chr4_1:22667931-22667950 None:intergenic 45.0%
! TGCGACACATGAGAGTATGT+AGG - chr4_1:22668006-22668025 Msa0540440:intron 45.0%
! GCGACACATGAGAGTATGTA+GGG - chr4_1:22668007-22668026 Msa0540440:intron 45.0%
! AGTATGTAGGGTACCATGTG+AGG - chr4_1:22668019-22668038 Msa0540440:intron 45.0%
AATATCCCGCCTGACAGTAT+CGG - chr4_1:22662497-22662516 Msa0540440:intron 45.0%
ATATACCGATACTGTCAGGC+GGG + chr4_1:22662505-22662524 None:intergenic 45.0%
CGCTTAAGCCAAGGGTAAAA+TGG - chr4_1:22668473-22668492 Msa0540440:intron 45.0%
CTTGCATCCTTTCTCTCTCT+AGG - chr4_1:22668550-22668569 Msa0540440:intron 45.0%
CAAGAAGCCTAGAGAGAGAA+AGG + chr4_1:22662720-22662739 None:intergenic 45.0%
TGGAAGAGTTGGAGAAGAGA+GGG + chr4_1:22662782-22662801 None:intergenic 45.0%
TTGGAAGAGTTGGAGAAGAG+AGG + chr4_1:22662783-22662802 None:intergenic 45.0%
GCTTGATCTTGTGCAAGCTA+TGG - chr4_1:22662948-22662967 Msa0540440:intron 45.0%
AATCAAGGAGGAAGAAGCCT+TGG - chr4_1:22668884-22668903 Msa0540440:intron 45.0%
TCCTTAGATAGTTCCCACCT+TGG - chr4_1:22663191-22663210 Msa0540440:intron 45.0%
CCTTAGATAGTTCCCACCTT+GGG - chr4_1:22663192-22663211 Msa0540440:intron 45.0%
ACAGTCCAGACCTGCAAAAA+TGG + chr4_1:22663412-22663431 None:intergenic 45.0%
TGGCGAGTAAACACCTCTTT+CGG + chr4_1:22669323-22669342 None:intergenic 45.0%
TCGAAGAAGATTGGACCGAA+CGG + chr4_1:22669455-22669474 None:intergenic 45.0%
CCCCTCAATACATGATTCCA+AGG - chr4_1:22663655-22663674 Msa0540440:intron 45.0%
AGTTCTCGACTACTATGTCG+AGG + chr4_1:22663808-22663827 None:intergenic 45.0%
! TCGGTTCGATTAAGTTTCCG+AGG - chr4_1:22663974-22663993 Msa0540440:intron 45.0%
! TGTCTCTTGCTATCCACATC+AGG - chr4_1:22664067-22664086 Msa0540440:intron 45.0%
! GTCTCTTGCTATCCACATCA+GGG - chr4_1:22664068-22664087 Msa0540440:intron 45.0%
! TCTCTTGCTATCCACATCAG+GGG - chr4_1:22664069-22664088 Msa0540440:intron 45.0%
ATCCACATCAGGGGGATAAA+AGG - chr4_1:22664078-22664097 Msa0540440:intron 45.0%
TCCACATCAGGGGGATAAAA+GGG - chr4_1:22664079-22664098 Msa0540440:intron 45.0%
TGAGAACGATTCAAGCCGTA+AGG - chr4_1:22664112-22664131 Msa0540440:intron 45.0%
GAGAACGATTCAAGCCGTAA+GGG - chr4_1:22664113-22664132 Msa0540440:intron 45.0%
! TTGTTTACTCGGTGACATGC+GGG + chr4_1:22664140-22664159 None:intergenic 45.0%
! CTTGTTTACTCGGTGACATG+CGG + chr4_1:22664141-22664160 None:intergenic 45.0%
TCACCGAGTAAACAAGACGT+AGG - chr4_1:22664145-22664164 Msa0540440:intron 45.0%
CATGACCGATGTACGTACAT+CGG + chr4_1:22664271-22664290 None:intergenic 45.0%
GTACGTACATCGGTCATGTA+TGG - chr4_1:22664273-22664292 Msa0540440:intron 45.0%
CATGTATGGGATTGTTCTCG+GGG - chr4_1:22664287-22664306 Msa0540440:intron 45.0%
GGGAAACCTAAGATCGTCAT+CGG + chr4_1:22664509-22664528 None:intergenic 45.0%
TTAGGTTTCCCCTAATCGTC+CGG - chr4_1:22664518-22664537 Msa0540440:intron 45.0%
CGATTCTAAACCGGACGATT+AGG + chr4_1:22664531-22664550 None:intergenic 45.0%
ACTTCCTATACGTGTCATGG+CGG + chr4_1:22664630-22664649 None:intergenic 45.0%
TGGGGACTTGCATACTTAGA+CGG + chr4_1:22664703-22664722 None:intergenic 45.0%
CGGTTGATTATACGTGTGTG+GGG + chr4_1:22664721-22664740 None:intergenic 45.0%
CCGGTTGATTATACGTGTGT+GGG + chr4_1:22664722-22664741 None:intergenic 45.0%
CCCACACACGTATAATCAAC+CGG - chr4_1:22664719-22664738 Msa0540440:intron 45.0%
GTGTCTACAATACAACCTGC+CGG + chr4_1:22664741-22664760 None:intergenic 45.0%
CAGGTTGTATTGTAGACACG+TGG - chr4_1:22664742-22664761 Msa0540440:intron 45.0%
TAGGCTATAGGCAACCTCAA+GGG + chr4_1:22670606-22670625 None:intergenic 45.0%
GCCTATAGCCTAGGATTTAG+CGG - chr4_1:22664790-22664809 Msa0540440:intron 45.0%
TCCGCTAAATCCTAGGCTAT+AGG + chr4_1:22664794-22664813 None:intergenic 45.0%
AGTGAGTTCCGCTAAATCCT+AGG + chr4_1:22664801-22664820 None:intergenic 45.0%
TGTTTATGCATGATCGGAGC+CGG - chr4_1:22664869-22664888 Msa0540440:intron 45.0%
GCCGGATGGAAATTACTTCA+AGG - chr4_1:22670711-22670730 Msa0540440:five_prime_UTR 45.0%
GCAGGGCGATATGAACATTA+AGG - chr4_1:22664926-22664945 Msa0540440:intron 45.0%
CCAGACGTATCTAGAAAGTC+TGG + chr4_1:22665085-22665104 None:intergenic 45.0%
CCAGACTTTCTAGATACGTC+TGG - chr4_1:22665082-22665101 Msa0540440:intron 45.0%
! TCTGGTATGGGTGTTACAAG+TGG - chr4_1:22670924-22670943 Msa0540440:five_prime_UTR 45.0%
! TCAGTTGATTCCCCGTCAAC+AGG + chr4_1:22660758-22660777 None:intergenic 50.0%
TGAACCACGGAGAGGTCATT+TGG - chr4_1:22660843-22660862 Msa0540440:intron 50.0%
TGTTCCAAATGACCTCTCCG+TGG + chr4_1:22660850-22660869 None:intergenic 50.0%
TGGAACACTGCCGTTGTGAT+TGG - chr4_1:22660863-22660882 Msa0540440:intron 50.0%
GGAACACTGCCGTTGTGATT+GGG - chr4_1:22660864-22660883 Msa0540440:intron 50.0%
GCCGTTGTGATTGGGAATCA+CGG - chr4_1:22660872-22660891 Msa0540440:intron 50.0%
GCCGTGATTCCCAATCACAA+CGG + chr4_1:22660876-22660895 None:intergenic 50.0%
! TTCAACCCTTGTGCCACTGT+TGG - chr4_1:22661174-22661193 Msa0540440:intron 50.0%
GTTCACCAACAGTGGCACAA+GGG + chr4_1:22661182-22661201 None:intergenic 50.0%
AGTTCACCAACAGTGGCACA+AGG + chr4_1:22661183-22661202 None:intergenic 50.0%
!! AAAGATGGGCTGAGAGACAC+AGG + chr4_1:22661857-22661876 None:intergenic 50.0%
ACTTGTGATCCTACTGCTCG+CGG - chr4_1:22662347-22662366 Msa0540440:intron 50.0%
GAAATAACACCGCGAGCAGT+AGG + chr4_1:22662359-22662378 None:intergenic 50.0%
AGAGTTGGAGAAGAGAGGGA+GGG + chr4_1:22662778-22662797 None:intergenic 50.0%
AAGAGTTGGAGAAGAGAGGG+AGG + chr4_1:22662779-22662798 None:intergenic 50.0%
! TTGTTGGTGAGCTAGGGTCA+TGG - chr4_1:22663012-22663031 Msa0540440:intron 50.0%
TGAGCTAGGGTCATGGAAGT+TGG - chr4_1:22663019-22663038 Msa0540440:intron 50.0%
CCCAAGGTGGGAACTATCTA+AGG + chr4_1:22663195-22663214 None:intergenic 50.0%
GCAAGCAAACACCACCGAAA+AGG - chr4_1:22663466-22663485 Msa0540440:intron 50.0%
TACTCACCATGAACTCGCAG+TGG - chr4_1:22663493-22663512 Msa0540440:intron 50.0%
TGGACCGAATGGAGGTGAAA+GGG + chr4_1:22663603-22663622 None:intergenic 50.0%
AAGAAGACTGGACCGAATGG+AGG + chr4_1:22663611-22663630 None:intergenic 50.0%
TCGAAGAAGACTGGACCGAA+TGG + chr4_1:22663614-22663633 None:intergenic 50.0%
GCATAGCAAGCATCTAGTCG+TGG - chr4_1:22663897-22663916 Msa0540440:intron 50.0%
! CTCTTGCTATCCACATCAGG+GGG - chr4_1:22664070-22664089 Msa0540440:intron 50.0%
CCACATCAGGGGGATAAAAG+GGG - chr4_1:22664080-22664099 Msa0540440:intron 50.0%
! TGTCTCTTGTTATCCACGCC+AGG - chr4_1:22664174-22664193 Msa0540440:intron 50.0%
! GTCTCTTGTTATCCACGCCA+GGG - chr4_1:22664175-22664194 Msa0540440:intron 50.0%
! TCTCTTGTTATCCACGCCAG+GGG - chr4_1:22664176-22664195 Msa0540440:intron 50.0%
GGAGTCCGATGTACGTACAT+CGG - chr4_1:22664263-22664282 Msa0540440:intron 50.0%
! ATTTTACGGATAGTCCCGGG+TGG + chr4_1:22664318-22664337 None:intergenic 50.0%
GCCGGTTGATTATACGTGTG+TGG + chr4_1:22664723-22664742 None:intergenic 50.0%
CACACGTATAATCAACCGGC+AGG - chr4_1:22664723-22664742 Msa0540440:intron 50.0%
TGACCGTAGGTTTCCCCTTA+AGG - chr4_1:22664765-22664784 Msa0540440:intron 50.0%
TATGCATGATCGGAGCCAGA+TGG - chr4_1:22664873-22664892 Msa0540440:intron 50.0%
CATTCCTCCTGGGTCCTATT+CGG + chr4_1:22665279-22665298 None:intergenic 50.0%
GTGAGTTCTCCGGGAATGTA+AGG - chr4_1:22665414-22665433 Msa0540440:intron 50.0%
ACAGGATGTTCCGACAACGT+TGG - chr4_1:22665446-22665465 Msa0540440:intron 50.0%
CAGGATGTTCCGACAACGTT+GGG - chr4_1:22665447-22665466 Msa0540440:intron 50.0%
AGCATCTCACCCAACGTTGT+CGG + chr4_1:22665459-22665478 None:intergenic 50.0%
TCCACTTCGTCCGCTAAGAA+CGG + chr4_1:22665762-22665781 None:intergenic 50.0%
GACCCTAGAGACGAAATGAC+AGG + chr4_1:22666078-22666097 None:intergenic 50.0%
GGGTCAGTAGTAGCTATTGG+GGG - chr4_1:22666093-22666112 Msa0540440:intron 50.0%
GCAAGAGTTGACGAAGAGCT+TGG - chr4_1:22666264-22666283 Msa0540440:intron 50.0%
GTGGATACACGTGCATGAGA+TGG - chr4_1:22666326-22666345 Msa0540440:intron 50.0%
!! GTAGAGTGGGCTAAACTCAC+CGG - chr4_1:22666577-22666596 Msa0540440:intron 50.0%
GGCTAAACTCACCGGAACTA+AGG - chr4_1:22666585-22666604 Msa0540440:intron 50.0%
! ACATGGGTCTTTGGCGTTGA+CGG + chr4_1:22666700-22666719 None:intergenic 50.0%
GCGTGGAACAAGAGAGAAGA+AGG + chr4_1:22668596-22668615 None:intergenic 50.0%
AGAGTTGGAGAAGAGAGGGA+GGG + chr4_1:22662778-22662797 None:intergenic 50.0%
AAGAGTTGGAGAAGAGAGGG+AGG + chr4_1:22662779-22662798 None:intergenic 50.0%
! TTGTTGGTGAGCTAGGGTCA+TGG - chr4_1:22663012-22663031 Msa0540440:intron 50.0%
TGAGCTAGGGTCATGGAAGT+TGG - chr4_1:22663019-22663038 Msa0540440:intron 50.0%
AGCAAAAGGAGCAAGGAGCT+AGG - chr4_1:22668949-22668968 Msa0540440:intron 50.0%
GCAAAAGGAGCAAGGAGCTA+GGG - chr4_1:22668950-22668969 Msa0540440:intron 50.0%
CCCAAGGTGGGAACTATCTA+AGG + chr4_1:22663195-22663214 None:intergenic 50.0%
CAAGCAAACACCACCGAAAG+AGG - chr4_1:22669307-22669326 Msa0540440:intron 50.0%
CGAGTAAACACCTCTTTCGG+TGG + chr4_1:22669320-22669339 None:intergenic 50.0%
AAGAAGATTGGACCGAACGG+AGG + chr4_1:22669452-22669471 None:intergenic 50.0%
GCATAGCAAGCATCTAGTCG+TGG - chr4_1:22663897-22663916 Msa0540440:intron 50.0%
! CTCTTGCTATCCACATCAGG+GGG - chr4_1:22664070-22664089 Msa0540440:intron 50.0%
CCACATCAGGGGGATAAAAG+GGG - chr4_1:22664080-22664099 Msa0540440:intron 50.0%
! TGTCTCTTGTTATCCACGCC+AGG - chr4_1:22664174-22664193 Msa0540440:intron 50.0%
! GTCTCTTGTTATCCACGCCA+GGG - chr4_1:22664175-22664194 Msa0540440:intron 50.0%
! TCTCTTGTTATCCACGCCAG+GGG - chr4_1:22664176-22664195 Msa0540440:intron 50.0%
GGAGTCCGATGTACGTACAT+CGG - chr4_1:22664263-22664282 Msa0540440:intron 50.0%
! ATTTTACGGATAGTCCCGGG+TGG + chr4_1:22664318-22664337 None:intergenic 50.0%
GCCGGTTGATTATACGTGTG+TGG + chr4_1:22664723-22664742 None:intergenic 50.0%
CACACGTATAATCAACCGGC+AGG - chr4_1:22664723-22664742 Msa0540440:intron 50.0%
CAACCTCAAGGGGAAACCTA+CGG + chr4_1:22670595-22670614 None:intergenic 50.0%
AGGCTATAGGCAACCTCAAG+GGG + chr4_1:22670605-22670624 None:intergenic 50.0%
CTAGGCTATAGGCAACCTCA+AGG + chr4_1:22670607-22670626 None:intergenic 50.0%
CTTGAGGTTGCCTATAGCCT+AGG - chr4_1:22670605-22670624 Msa0540440:CDS 50.0%
GAGGGATATGAACCACGGAG+AGG - chr4_1:22660835-22660854 Msa0540440:intron 55.0%
AGCAAGCGCAGAGGCTGAAT+AGG + chr4_1:22661991-22662010 None:intergenic 55.0%
TATTCAGCCTCTGCGCTTGC+TGG - chr4_1:22661990-22662009 Msa0540440:intron 55.0%
AGGAGCAAGGAGCTAGGGTT+TGG - chr4_1:22663115-22663134 Msa0540440:intron 55.0%
TCGGTGGTGTTTGCTTGCCA+TGG + chr4_1:22663464-22663483 None:intergenic 55.0%
TACTCGCCACTGCGAGTTCA+TGG + chr4_1:22663502-22663521 None:intergenic 55.0%
GGCGAGTAAGTAACTCGCAG+TGG - chr4_1:22663514-22663533 Msa0540440:intron 55.0%
AGTAACTCGCAGTGGCGAGT+AGG - chr4_1:22663522-22663541 Msa0540440:intron 55.0%
ACTCGCAGTGGCGAGTAACA+TGG - chr4_1:22663548-22663567 Msa0540440:intron 55.0%
CTCGCAGTGGCGAGTAACAT+GGG - chr4_1:22663549-22663568 Msa0540440:intron 55.0%
CAGGCCCTTTCACCTCCATT+CGG - chr4_1:22663596-22663615 Msa0540440:intron 55.0%
CTGGACCGAATGGAGGTGAA+AGG + chr4_1:22663604-22663623 None:intergenic 55.0%
! CCCCTTTTATCCCCCTGATG+TGG + chr4_1:22664083-22664102 None:intergenic 55.0%
! CTCTTGTTATCCACGCCAGG+GGG - chr4_1:22664177-22664196 Msa0540440:intron 55.0%
TTATCCACGCCAGGGGGATA+CGG - chr4_1:22664183-22664202 Msa0540440:intron 55.0%
TACGGGAGGTTCTCGACCTA+AGG - chr4_1:22664201-22664220 Msa0540440:intron 55.0%
ACGGGAGGTTCTCGACCTAA+GGG - chr4_1:22664202-22664221 Msa0540440:intron 55.0%
GGTTCTCGACCTAAGGGGAA+CGG - chr4_1:22664208-22664227 Msa0540440:intron 55.0%
CGGCTTAAACCGTTCCCCTT+AGG + chr4_1:22664220-22664239 None:intergenic 55.0%
GGGAACGGTTTAAGCCGCAA+GGG - chr4_1:22664223-22664242 Msa0540440:intron 55.0%
GTACGTACATCGGACTCCCT+CGG + chr4_1:22664261-22664280 None:intergenic 55.0%
ATACGTGTCATGGCGGTCGA+GGG + chr4_1:22664623-22664642 None:intergenic 55.0%
TATACGTGTCATGGCGGTCG+AGG + chr4_1:22664624-22664643 None:intergenic 55.0%
TCGACCGCCATGACACGTAT+AGG - chr4_1:22664623-22664642 Msa0540440:intron 55.0%
TGTAGACACGTGGTGACCGT+AGG - chr4_1:22664752-22664771 Msa0540440:intron 55.0%
GGTTCGTTCGTGAAGCTGCA+GGG - chr4_1:22664909-22664928 Msa0540440:intron 55.0%
! GTCGATTCAGACCGTGCCTT+GGG - chr4_1:22665134-22665153 Msa0540440:intron 55.0%
! GTAGTGGGACCATTGGGTTC+CGG - chr4_1:22665176-22665195 Msa0540440:intron 55.0%
TAGTGGGACCATTGGGTTCC+GGG - chr4_1:22665177-22665196 Msa0540440:intron 55.0%
TGGATGCCTGAGAGCCGAAT+AGG - chr4_1:22665262-22665281 Msa0540440:intron 55.0%
CCACTCTGATTCCCACCAGT+TGG + chr4_1:22667130-22667149 None:intergenic 55.0%
CCAACTGGTGGGAATCAGAG+TGG - chr4_1:22667127-22667146 Msa0540440:intron 55.0%
AGGAGCAAGGAGCTAGGGTT+TGG - chr4_1:22663115-22663134 Msa0540440:intron 55.0%
TCGGTGGTGTTTGCTTGCCA+TGG + chr4_1:22663464-22663483 None:intergenic 55.0%
TACTCGCCATGAACTCGCAG+TGG - chr4_1:22669334-22669353 Msa0540440:intron 55.0%
TACTCGCCACTGCGAGTTCA+TGG + chr4_1:22663502-22663521 None:intergenic 55.0%
GGCGAGTAAGTAACTCGCAG+TGG - chr4_1:22663514-22663533 Msa0540440:intron 55.0%
AGTAACTCGCAGTGGCGAGT+AGG - chr4_1:22663522-22663541 Msa0540440:intron 55.0%
ACTCGCAGTGGCGAGTAACA+TGG - chr4_1:22663548-22663567 Msa0540440:intron 55.0%
CTCGCAGTGGCGAGTAACAT+GGG - chr4_1:22663549-22663568 Msa0540440:intron 55.0%
TGGACCGAACGGAGGTGAAA+GGG + chr4_1:22669444-22669463 None:intergenic 55.0%
TTGGACCGAACGGAGGTGAA+AGG + chr4_1:22669445-22669464 None:intergenic 55.0%
! CCCCTTTTATCCCCCTGATG+TGG + chr4_1:22664083-22664102 None:intergenic 55.0%
! CTCTTGTTATCCACGCCAGG+GGG - chr4_1:22664177-22664196 Msa0540440:intron 55.0%
TTATCCACGCCAGGGGGATA+CGG - chr4_1:22664183-22664202 Msa0540440:intron 55.0%
TACGGGAGGTTCTCGACCTA+AGG - chr4_1:22664201-22664220 Msa0540440:intron 55.0%
ACGGGAGGTTCTCGACCTAA+GGG - chr4_1:22664202-22664221 Msa0540440:intron 55.0%
GGTTCTCGACCTAAGGGGAA+CGG - chr4_1:22664208-22664227 Msa0540440:intron 55.0%
CGGCTTAAACCGTTCCCCTT+AGG + chr4_1:22664220-22664239 None:intergenic 55.0%
GGGAACGGTTTAAGCCGCAA+GGG - chr4_1:22664223-22664242 Msa0540440:intron 55.0%
ACGTACATCGGACTCCCTTG+CGG + chr4_1:22670083-22670102 None:intergenic 55.0%
ATACGTGTCATGGCGGTCGA+GGG + chr4_1:22664623-22664642 None:intergenic 55.0%
TATACGTGTCATGGCGGTCG+AGG + chr4_1:22664624-22664643 None:intergenic 55.0%
TCGACCGCCATGACACGTAT+AGG - chr4_1:22664623-22664642 Msa0540440:intron 55.0%
TGTAGACACGTGGTGACCGT+AGG - chr4_1:22664752-22664771 Msa0540440:intron 55.0%
TGACCGTAGGTTTCCCCTTG+AGG - chr4_1:22670589-22670608 Msa0540440:intron 55.0%
TATGCATGATCGGAGCCGGA+TGG - chr4_1:22670697-22670716 Msa0540440:exon 55.0%
GGTTCGTTCGTGAAGCTGCA+GGG - chr4_1:22664909-22664928 Msa0540440:intron 55.0%
! AGCTGCTGCTGCTGCTGACT+GGG - chr4_1:22661799-22661818 Msa0540440:intron 60.0%
! GCTGCTGCTGACTGGGTTCA+CGG - chr4_1:22661806-22661825 Msa0540440:intron 60.0%
! CTGCTGCTGACTGGGTTCAC+GGG - chr4_1:22661807-22661826 Msa0540440:intron 60.0%
CGGCGAGCAATTACTCGCCA+TGG - chr4_1:22663444-22663463 Msa0540440:intron 60.0%
GCGAGTAGGTGAACTCGCAG+TGG - chr4_1:22663536-22663555 Msa0540440:intron 60.0%
GCAGTGGCGAGTAACATGGG+TGG - chr4_1:22663552-22663571 Msa0540440:intron 60.0%
GAGGTGAAAGGGCCTGAAGC+GGG + chr4_1:22663592-22663611 None:intergenic 60.0%
GGAGGTGAAAGGGCCTGAAG+CGG + chr4_1:22663593-22663612 None:intergenic 60.0%
GGTGACATGCGGGTCCCTTA+CGG + chr4_1:22664130-22664149 None:intergenic 60.0%
TATCCACGCCAGGGGGATAC+GGG - chr4_1:22664184-22664203 Msa0540440:intron 60.0%
CGGGAGGTTCTCGACCTAAG+GGG - chr4_1:22664203-22664222 Msa0540440:intron 60.0%
GGGGAACGGTTTAAGCCGCA+AGG - chr4_1:22664222-22664241 Msa0540440:intron 60.0%
GTTCTCGGGGTTACTCCACC+CGG - chr4_1:22664300-22664319 Msa0540440:intron 60.0%
TTCTCGGGGTTACTCCACCC+GGG - chr4_1:22664301-22664320 Msa0540440:intron 60.0%
TACGTGTCATGGCGGTCGAG+GGG + chr4_1:22664622-22664641 None:intergenic 60.0%
GGGTTCGTTCGTGAAGCTGC+AGG - chr4_1:22664908-22664927 Msa0540440:intron 60.0%
! GGTCGATTCAGACCGTGCCT+TGG - chr4_1:22665133-22665152 Msa0540440:intron 60.0%
CTGGGTCCTATTCGGCTCTC+AGG + chr4_1:22665271-22665290 None:intergenic 60.0%
CTGAGAGCCGAATAGGACCC+AGG - chr4_1:22665269-22665288 Msa0540440:intron 60.0%
AGAGCCGAATAGGACCCAGG+AGG - chr4_1:22665272-22665291 Msa0540440:intron 60.0%
! GCCGTTCTTAGCGGACGAAG+TGG - chr4_1:22665758-22665777 Msa0540440:intron 60.0%
CGGCGAGCAATTACTCGCCA+TGG - chr4_1:22663444-22663463 Msa0540440:intron 60.0%
GCGAGTAGGTGAACTCGCAG+TGG - chr4_1:22663536-22663555 Msa0540440:intron 60.0%
GCAGTGGCGAGTAACATGGG+TGG - chr4_1:22663552-22663571 Msa0540440:intron 60.0%
GAGGTGAAAGGGCCTGAAGC+GGG + chr4_1:22663592-22663611 None:intergenic 60.0%
GGAGGTGAAAGGGCCTGAAG+CGG + chr4_1:22663593-22663612 None:intergenic 60.0%
CAGGCCCTTTCACCTCCGTT+CGG - chr4_1:22669437-22669456 Msa0540440:intron 60.0%
GGTGACATGCGGGTCCCTTA+CGG + chr4_1:22664130-22664149 None:intergenic 60.0%
TATCCACGCCAGGGGGATAC+GGG - chr4_1:22664184-22664203 Msa0540440:intron 60.0%
CGGGAGGTTCTCGACCTAAG+GGG - chr4_1:22664203-22664222 Msa0540440:intron 60.0%
GGGGAACGGTTTAAGCCGCA+AGG - chr4_1:22664222-22664241 Msa0540440:intron 60.0%
GTTCTCGGGGTTACTCCACC+CGG - chr4_1:22664300-22664319 Msa0540440:intron 60.0%
TTCTCGGGGTTACTCCACCC+GGG - chr4_1:22664301-22664320 Msa0540440:intron 60.0%
TACGTGTCATGGCGGTCGAG+GGG + chr4_1:22664622-22664641 None:intergenic 60.0%
GGGTTCGTTCGTGAAGCTGC+AGG - chr4_1:22664908-22664927 Msa0540440:intron 60.0%
CAGCTGCTGCTGCTGCTGAC+TGG - chr4_1:22661798-22661817 Msa0540440:intron 65.0%
GGAGGAACCAGCAAGCGCAG+AGG + chr4_1:22662000-22662019 None:intergenic 65.0%
TGGAGAAGAGAGGGAGGGCG+TGG + chr4_1:22662773-22662792 None:intergenic 65.0%
GCACCCTGTTTGCCCGCTTC+AGG - chr4_1:22663577-22663596 Msa0540440:intron 65.0%
GGGCCTGAAGCGGGCAAACA+GGG + chr4_1:22663583-22663602 None:intergenic 65.0%
AGGGCCTGAAGCGGGCAAAC+AGG + chr4_1:22663584-22663603 None:intergenic 65.0%
GAGAACCTCCCGTATCCCCC+TGG + chr4_1:22664195-22664214 None:intergenic 65.0%
ACGTGTCATGGCGGTCGAGG+GGG + chr4_1:22664621-22664640 None:intergenic 65.0%
TGGAGAAGAGAGGGAGGGCG+TGG + chr4_1:22662773-22662792 None:intergenic 65.0%
GCACCCTGTTTGCCCGCTTC+AGG - chr4_1:22663577-22663596 Msa0540440:intron 65.0%
GGGCCTGAAGCGGGCAAACA+GGG + chr4_1:22663583-22663602 None:intergenic 65.0%
AGGGCCTGAAGCGGGCAAAC+AGG + chr4_1:22663584-22663603 None:intergenic 65.0%
GAGAACCTCCCGTATCCCCC+TGG + chr4_1:22664195-22664214 None:intergenic 65.0%
ACGTGTCATGGCGGTCGAGG+GGG + chr4_1:22664621-22664640 None:intergenic 65.0%
! GGTGTCGTGCGGGTCCCTTG+CGG + chr4_1:22664240-22664259 None:intergenic 70.0%
AAGGGACCCGCACGACACCG+AGG - chr4_1:22664241-22664260 Msa0540440:intron 70.0%
AGGGACCCGCACGACACCGA+GGG - chr4_1:22664242-22664261 Msa0540440:intron 70.0%
!! GGACTCCCTCGGTGTCGTGC+GGG + chr4_1:22664250-22664269 None:intergenic 70.0%
!! CGGACTCCCTCGGTGTCGTG+CGG + chr4_1:22664251-22664270 None:intergenic 70.0%
CCTCCCGTATCCCCCTGGCG+TGG + chr4_1:22664190-22664209 None:intergenic 75.0%
CCACGCCAGGGGGATACGGG+AGG - chr4_1:22664187-22664206 Msa0540440:intron 75.0%
CCTCCCGTATCCCCCTGGCG+TGG + chr4_1:22664190-22664209 None:intergenic 75.0%
CCACGCCAGGGGGATACGGG+AGG - chr4_1:22664187-22664206 Msa0540440:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 22660409 22671101 22660409 ID=Msa0540440;Name=Msa0540440
chr4_1 mRNA 22660409 22671101 22660409 ID=Msa0540440-mRNA-1;Parent=Msa0540440;Name=Msa0540440-mRNA-1;_AED=0.12;_eAED=0.12;_QI=400|1|1|1|0.75|0.6|5|176|203
chr4_1 exon 22660409 22660567 22660409 ID=Msa0540440-mRNA-1:exon:6319;Parent=Msa0540440-mRNA-1
chr4_1 exon 22669021 22669260 22669021 ID=Msa0540440-mRNA-1:exon:6318;Parent=Msa0540440-mRNA-1
chr4_1 exon 22669446 22669525 22669446 ID=Msa0540440-mRNA-1:exon:6317;Parent=Msa0540440-mRNA-1
chr4_1 exon 22669609 22669806 22669609 ID=Msa0540440-mRNA-1:exon:6316;Parent=Msa0540440-mRNA-1
chr4_1 exon 22670591 22671101 22670591 ID=Msa0540440-mRNA-1:exon:6315;Parent=Msa0540440-mRNA-1
chr4_1 five_prime_UTR 22670702 22671101 22670702 ID=Msa0540440-mRNA-1:five_prime_utr;Parent=Msa0540440-mRNA-1
chr4_1 CDS 22670591 22670701 22670591 ID=Msa0540440-mRNA-1:cds;Parent=Msa0540440-mRNA-1
chr4_1 CDS 22669609 22669806 22669609 ID=Msa0540440-mRNA-1:cds;Parent=Msa0540440-mRNA-1
chr4_1 CDS 22669446 22669525 22669446 ID=Msa0540440-mRNA-1:cds;Parent=Msa0540440-mRNA-1
chr4_1 CDS 22669038 22669260 22669038 ID=Msa0540440-mRNA-1:cds;Parent=Msa0540440-mRNA-1
chr4_1 three_prime_UTR 22669021 22669037 22669021 ID=Msa0540440-mRNA-1:three_prime_utr;Parent=Msa0540440-mRNA-1
chr4_1 three_prime_UTR 22660409 22660567 22660409 ID=Msa0540440-mRNA-1:three_prime_utr;Parent=Msa0540440-mRNA-1
Gene Sequence

>Msa0540440

ATGGTGAATATAAGCCCATTTCTTGAGAGGGATATGAACCACGGAGAGGTCATTTGGAACACTGCCGTTGTGATTGGGAATCACGGCAATATAATTGGGATACACGTGAAGGTTAATCATGCCCTTTTGGAAGAAATACAGCAAATTAATCGCCGAATTATTGACACAGTAGTAGACATAAGTAATGAAGATGTTGATTCAACTACAGCTGCTGCTGCTGCTGACTGGGTTCACGGGACCATTGTCAAATGTTGTTTCATTCCTGTGTCTCTCAGCCCATCTTTAAAATCAAAATATGTTTCACTACAATCGCCTATTCAGCCTCTGCGCTTGCTGGTTCCTCCAAACTATCCTAATTCTTCTCCCATATTCATACCAGTTGAATCCCGTAAGGGGAATGAGGATCTTTCAAAGAAAGCAAAAGTGAAGCTTAGCATGTCCTTATGTAATTTCTCACAACCTATGTCCCTTAAGGATATAGCAAAGACTTGTGATCCTACTGCTCGCGGTGTTATTTCTGAGTATGCACAACAATTTGGTGGAGGAACATTCAGCTCTAAGTATGGAGAATGGCAGGAGTTCACATCTTGGGAAGATTTGTTAGCTGCATAA
Protein sequence

>Msa0540440

MVNISPFLERDMNHGEVIWNTAVVIGNHGNIIGIHVKVNHALLEEIQQINRRIIDTVVDISNEDVDSTTAAAAADWVHGTIVKCCFIPVSLSPSLKSKYVSLQSPIQPLRLLVPPNYPNSSPIFIPVESRKGNEDLSKKAKVKLSMSLCNFSQPMSLKDIAKTCDPTARGVISEYAQQFGGGTFSSKYGEWQEFTSWEDLLAA*