AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1068790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1068790 MtrunA17_Chr4g0002981 78.512 121 26 0 8 128 1170 1290 1.93e-60 200
Msa1068790 MtrunA17_Chr2g0333451 72.165 97 27 0 26 122 1193 1289 3.18e-41 145
Msa1068790 MtrunA17_Chr8g0354961 47.312 93 49 0 25 117 97 189 6.18e-24 91.3
Msa1068790 MtrunA17_Chr8g0354921 41.935 93 54 0 25 117 243 335 3.85e-19 81.3
Msa1068790 MtrunA17_Chr4g0052781 31.068 103 70 1 5 106 387 489 4.46e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1068790 AT1G15780.1 66.667 96 32 0 26 121 1238 1333 1.13e-37 135
Msa1068790 AT1G15780.3 66.667 96 32 0 26 121 1260 1355 1.29e-37 135
Msa1068790 AT2G10440.1 46.316 95 50 1 24 117 835 929 9.15e-21 87.0
Msa1068790 AT2G10440.2 48.352 91 46 1 28 117 749 839 1.35e-20 86.7

Find 92 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTTGATTGTAGGAATTT+TGG 0.123361 7_2:-64003699 Msa1068790:intron
CCAAAAGTTTAACAGTTTAA+AGG 0.155060 7_2:+64003248 None:intergenic
TGAATTTACAATTTATAAAT+TGG 0.173711 7_2:-64004678 Msa1068790:five_prime_UTR
TGGAAACTTGTCTATGAATA+TGG 0.187776 7_2:+64002341 None:intergenic
CCTGTATTTGAAACAGAATT+TGG 0.195313 7_2:-64003308 Msa1068790:five_prime_UTR
TACTCATGTGACTTTATAAA+TGG 0.206790 7_2:+64001738 None:intergenic
TGAACCACGGAGAGGTTATT+TGG 0.224777 7_2:-64003534 Msa1068790:five_prime_UTR
GGGAATCACAGCAATATAAT+TGG 0.229036 7_2:-64003493 Msa1068790:five_prime_UTR
TGAAAGCAGAAGCTCTTTAA+TGG 0.234252 7_2:-64004466 Msa1068790:intron
TCCGAGTATGCACAACAATT+TGG 0.240706 7_2:-64001994 Msa1068790:CDS
GGAGAAGAATTAGGATAGTT+TGG 0.245726 7_2:+64002363 None:intergenic
CCTTTAAACTGTTAAACTTT+TGG 0.262672 7_2:-64003248 Msa1068790:five_prime_UTR
CCAAATTCTGTTTCAAATAC+AGG 0.271594 7_2:+64003308 None:intergenic
CTTTGCACTGAAGTATAAAA+TGG 0.300553 7_2:-64003587 Msa1068790:five_prime_UTR
TATTCAGCCTCTGCGCTTGC+TGG 0.317270 7_2:-64002391 Msa1068790:CDS
ATAAAACAACTGACCTCTAT+TGG 0.336319 7_2:+64003158 None:intergenic
ACAAGGGTTGAAAACAATTT+CGG 0.340440 7_2:+64003214 None:intergenic
ATGAATATGGGAGAAGAATT+AGG 0.346819 7_2:+64002354 None:intergenic
CACTGAGAGTGCATATTATA+TGG 0.348615 7_2:-64003348 Msa1068790:five_prime_UTR
TCTCTATTTCGTTTAAGAAA+TGG 0.351637 7_2:+64001764 None:intergenic
CTCCTAGGCCAAAATTAAAA+AGG 0.352934 7_2:+64001860 None:intergenic
ATTGACATTAATATATGTTA+TGG 0.362701 7_2:-64003281 Msa1068790:five_prime_UTR
AAGTCTTTGCTATATCCTTA+AGG 0.366345 7_2:+64002043 None:intergenic
TTCATATCCCTCTCAAGAAA+TGG 0.366645 7_2:+64003553 None:intergenic
TTTACCTATCTATATTTGTA+TGG 0.367258 7_2:+64004850 None:intergenic
CTCACAACCTATGTCCCTTA+AGG 0.372725 7_2:-64002058 Msa1068790:CDS
AATGAATTATTCTTAAATAG+TGG 0.400998 7_2:-64001900 Msa1068790:three_prime_UTR
TGGAACACTGCCGTTGTGAT+TGG 0.411409 7_2:-64003514 Msa1068790:five_prime_UTR
TCAGTTGATTCCCCATCAAC+AGG 0.412350 7_2:+64003622 None:intergenic
AGTGAAAATACTAATCAGTT+AGG 0.415221 7_2:+64004628 None:intergenic
GCTATTATTGAATAAACAAC+AGG 0.420767 7_2:+64001802 None:intergenic
GGAACATTCAGCTCTAAGTA+TGG 0.422754 7_2:-64001967 Msa1068790:CDS
TGATCTCACCGGGATTCAAC+TGG 0.425301 7_2:+64002321 None:intergenic
ACCAAATTGTTGTGCATACT+CGG 0.438409 7_2:+64001993 None:intergenic
GCTATATCCTTAAGGGACAT+AGG 0.441593 7_2:+64002051 None:intergenic
AGTCTTTGCTATATCCTTAA+GGG 0.444176 7_2:+64002044 None:intergenic
GGAATCACAGCAATATAATT+GGG 0.466717 7_2:-64003492 Msa1068790:five_prime_UTR
TACAATTTATAAATTGGCTA+TGG 0.472846 7_2:-64004672 Msa1068790:five_prime_UTR
GGAACACTGCCGTTGTGATT+GGG 0.476635 7_2:-64003513 Msa1068790:five_prime_UTR
GGAAACTTGTCTATGAATAT+GGG 0.483866 7_2:+64002342 None:intergenic
TCATATCCCTCTCAAGAAAT+GGG 0.484312 7_2:+64003554 None:intergenic
AGCAAGCGCAGAGGCTGAAT+AGG 0.488171 7_2:+64002393 None:intergenic
CAAATTCTGTTTCAAATACA+GGG 0.488273 7_2:+64003309 None:intergenic
TATTATATGGAAGGAAATAC+AGG 0.489742 7_2:-64003335 Msa1068790:five_prime_UTR
GAAATAACACCGCGAGCAGT+AGG 0.494316 7_2:+64002015 None:intergenic
CTCTGATGCAGAGAGGGCAT+TGG 0.495323 7_2:-64004543 Msa1068790:five_prime_UTR
ATGGCAGGAGTTCACATCTT+GGG 0.498030 7_2:-64001941 Msa1068790:CDS
GAAGAATTAGGATAGTTTGG+AGG 0.499904 7_2:+64002366 None:intergenic
GAATTTGCAGAACCTGTTGA+TGG 0.505729 7_2:-64003634 Msa1068790:five_prime_UTR
CTCTAAGTATGGAGAATGGC+AGG 0.507662 7_2:-64001956 Msa1068790:CDS
AATAATGTTTGAAACCTCCT+AGG 0.515891 7_2:+64001845 None:intergenic
GGGGCCATACAAATATAGAT+AGG 0.517603 7_2:-64004854 None:intergenic
AATACTAATCAGTTAGGAAG+AGG 0.518855 7_2:+64004634 None:intergenic
ACATTAATATATGTTATGGT+AGG 0.529598 7_2:-64003277 Msa1068790:five_prime_UTR
ACAAGTTTCCAGTTGAATCC+CGG 0.532358 7_2:-64002329 Msa1068790:intron
TATAAGCCCATTTCTTGAGA+GGG 0.534996 7_2:-64003560 Msa1068790:five_prime_UTR
CAATGCCCTCTCTGCATCAG+AGG 0.535640 7_2:+64004544 None:intergenic
TTCAACCCTTGTGCCACTGT+TGG 0.542711 7_2:-64003203 Msa1068790:CDS
AATTTGCAGAACCTGTTGAT+GGG 0.546882 7_2:-64003633 Msa1068790:five_prime_UTR
TGAAGCAATGTGGCCAATAG+AGG 0.548834 7_2:-64003171 Msa1068790:intron
AATGGCAGGAGTTCACATCT+TGG 0.551776 7_2:-64001942 Msa1068790:CDS
GAGTATGCACAACAATTTGG+TGG 0.553199 7_2:-64001991 Msa1068790:CDS
AAGTTTAACAGTTTAAAGGA+TGG 0.558412 7_2:+64003252 None:intergenic
AGGTTGTGAGAAATTACATA+AGG 0.561974 7_2:+64002071 None:intergenic
AACATCCTCTGATGCAGAGA+GGG 0.562027 7_2:-64004549 Msa1068790:five_prime_UTR
TACTAATCAGTTAGGAAGAG+GGG 0.567978 7_2:+64004636 None:intergenic
GAGAGTGCATATTATATGGA+AGG 0.573759 7_2:-64003344 Msa1068790:five_prime_UTR
TTCCCCTTCACAAAATCTAG+AGG 0.581754 7_2:-64004705 Msa1068790:five_prime_UTR
GGCATTGGAACATATTAATG+AGG 0.584362 7_2:-64004528 Msa1068790:five_prime_UTR
TCTCGTGTAGAGAAACCAAA+TGG 0.585598 7_2:+64003670 None:intergenic
TTATAAGCCCATTTCTTGAG+AGG 0.587724 7_2:-64003561 Msa1068790:five_prime_UTR
ATACTAATCAGTTAGGAAGA+GGG 0.588417 7_2:+64004635 None:intergenic
GCAATATAATTGGGATACAC+AGG 0.593877 7_2:-64003483 Msa1068790:five_prime_UTR
ATTTCGTTTAAGAAATGGAG+AGG 0.597227 7_2:+64001769 None:intergenic
AGTTCACCAACAGTGGCACA+AGG 0.598065 7_2:+64003197 None:intergenic
TTATGGCAGTAAAGGGAATG+AGG 0.598544 7_2:-64002130 Msa1068790:intron
TCAGCTCTAAGTATGGAGAA+TGG 0.598733 7_2:-64001960 Msa1068790:CDS
TTCAGTGAGTTCACCAACAG+TGG 0.610975 7_2:+64003190 None:intergenic
TCTCTACACGAGAGAAGAAG+TGG 0.622564 7_2:-64003660 Msa1068790:five_prime_UTR
ACTTGTGATCCTACTGCTCG+CGG 0.635100 7_2:-64002024 Msa1068790:CDS
ACTAATCAGTTAGGAAGAGG+GGG 0.637427 7_2:+64004637 None:intergenic
TATGCACAACAATTTGGTGG+AGG 0.647411 7_2:-64001988 Msa1068790:CDS
CTTGAGAGGGATATGAACCA+CGG 0.660131 7_2:-64003547 Msa1068790:five_prime_UTR
TATAATTGGGATACACAGGA+AGG 0.665482 7_2:-64003479 Msa1068790:intron
ATTTGCAGAACCTGTTGATG+GGG 0.680787 7_2:-64003632 Msa1068790:five_prime_UTR
GAACATCCTCTGATGCAGAG+AGG 0.691498 7_2:-64004550 Msa1068790:five_prime_UTR
GGAGGAACCAGCAAGCGCAG+AGG 0.697641 7_2:+64002384 None:intergenic
GTTCACCAACAGTGGCACAA+GGG 0.707791 7_2:+64003198 None:intergenic
GAGGGATATGAACCACGGAG+AGG 0.717220 7_2:-64003542 Msa1068790:five_prime_UTR
GCTGTGATTCCCAATCACAA+CGG 0.738812 7_2:+64003504 None:intergenic
TGTTCCAAATAACCTCTCCG+TGG 0.747550 7_2:+64003530 None:intergenic
GTGAACTCACTGAAGCAATG+TGG 0.756724 7_2:-64003181 Msa1068790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATTTACAATTTATAAAT+TGG - chr7_2:64001914-64001933 Msa1068790:exon 10.0%
!! AAAATTCAAAATTTGATTGT+AGG - chr7_2:64002885-64002904 Msa1068790:intron 15.0%
!! ATTGACATTAATATATGTTA+TGG - chr7_2:64003311-64003330 Msa1068790:five_prime_UTR 15.0%
!! TGTATTAAAAAAAATTACAG+TGG + chr7_2:64003781-64003800 None:intergenic 15.0%
!! AATGAATTATTCTTAAATAG+TGG - chr7_2:64004692-64004711 Msa1068790:five_prime_UTR 15.0%
!! TACAATTTATAAATTGGCTA+TGG - chr7_2:64001920-64001939 Msa1068790:exon 20.0%
!! TTTATATAAACAAACATCGA+AGG + chr7_2:64002868-64002887 None:intergenic 20.0%
!!! AAATTTGATTGTAGGAATTT+TGG - chr7_2:64002893-64002912 Msa1068790:intron 20.0%
!! ACATTAATATATGTTATGGT+AGG - chr7_2:64003315-64003334 Msa1068790:five_prime_UTR 20.0%
!! TTTAGAGAAATATGGAATAT+CGG + chr7_2:64003533-64003552 None:intergenic 20.0%
!!! TTGATTTGCTTTTCTAAAAA+GGG - chr7_2:64003579-64003598 Msa1068790:five_prime_UTR 20.0%
!!! CATATTGAGATTTTAAAGAT+GGG + chr7_2:64004086-64004105 None:intergenic 20.0%
!!! TGCTTTAATTTTGCTAATTT+CGG - chr7_2:64004315-64004334 Msa1068790:intron 20.0%
!!! TAGTGTTATTATATACGTTA+TGG - chr7_2:64004445-64004464 Msa1068790:intron 20.0%
!!! TATGAAGACCTTTTTAATTT+TGG - chr7_2:64004724-64004743 Msa1068790:five_prime_UTR 20.0%
! AGTGAAAATACTAATCAGTT+AGG + chr7_2:64001967-64001986 None:intergenic 25.0%
!! TAACTGATTAGTATTTTCAC+TGG - chr7_2:64001966-64001985 Msa1068790:CDS 25.0%
!! AGTGAGTATAAAGCATTAAA+GGG + chr7_2:64002651-64002670 None:intergenic 25.0%
!! TAGTGAGTATAAAGCATTAA+AGG + chr7_2:64002652-64002671 None:intergenic 25.0%
! TTTATTAGATAGCTGAAAGA+CGG + chr7_2:64003181-64003200 None:intergenic 25.0%
! TATTATATGGAAGGAAATAC+AGG - chr7_2:64003257-64003276 Msa1068790:five_prime_UTR 25.0%
! CAAATTCTGTTTCAAATACA+GGG + chr7_2:64003286-64003305 None:intergenic 25.0%
! AAGTTTAACAGTTTAAAGGA+TGG + chr7_2:64003343-64003362 None:intergenic 25.0%
! CCAAAAGTTTAACAGTTTAA+AGG + chr7_2:64003347-64003366 None:intergenic 25.0%
!! CCTTTAAACTGTTAAACTTT+TGG - chr7_2:64003344-64003363 Msa1068790:five_prime_UTR 25.0%
! AAACATGTTAAACTCTTATC+TGG - chr7_2:64003466-64003485 Msa1068790:intron 25.0%
! AATTATTCTAGCATAGATGT+AGG - chr7_2:64003507-64003526 Msa1068790:five_prime_UTR 25.0%
!!! GTTGATTTGCTTTTCTAAAA+AGG - chr7_2:64003578-64003597 Msa1068790:five_prime_UTR 25.0%
! AAACTCATAAAAGCTATTAG+AGG - chr7_2:64003632-64003651 Msa1068790:five_prime_UTR 25.0%
! AACTCATAAAAGCTATTAGA+GGG - chr7_2:64003633-64003652 Msa1068790:five_prime_UTR 25.0%
!! CATTTGGAATATGTTTGATT+TGG - chr7_2:64003682-64003701 Msa1068790:five_prime_UTR 25.0%
! AAAAATTACAGTGGCTTAAT+GGG + chr7_2:64003772-64003791 None:intergenic 25.0%
! AAAAAATTACAGTGGCTTAA+TGG + chr7_2:64003773-64003792 None:intergenic 25.0%
! TTGTTGTATTTCTTCCAAAA+GGG + chr7_2:64003932-64003951 None:intergenic 25.0%
!! TTTGTTGTATTTCTTCCAAA+AGG + chr7_2:64003933-64003952 None:intergenic 25.0%
! AATGAAAGAACATTTGACAA+TGG + chr7_2:64004049-64004068 None:intergenic 25.0%
!!! GCATATTGAGATTTTAAAGA+TGG + chr7_2:64004087-64004106 None:intergenic 25.0%
! AAAAATCAGTTGCAAAATCT+GGG + chr7_2:64004129-64004148 None:intergenic 25.0%
! AAAAAATCAGTTGCAAAATC+TGG + chr7_2:64004130-64004149 None:intergenic 25.0%
! AAGGTGATAAAACACAATTA+AGG + chr7_2:64004172-64004191 None:intergenic 25.0%
! TTAGCAAAATTAAAGCATGT+GGG + chr7_2:64004312-64004331 None:intergenic 25.0%
! ATTAGCAAAATTAAAGCATG+TGG + chr7_2:64004313-64004332 None:intergenic 25.0%
! GCAGCAAAATTTAAAGATAA+GGG + chr7_2:64004408-64004427 None:intergenic 25.0%
! GCTATTATTGAATAAACAAC+AGG + chr7_2:64004793-64004812 None:intergenic 25.0%
! TCTCTATTTCGTTTAAGAAA+TGG + chr7_2:64004831-64004850 None:intergenic 25.0%
! AAACCTCTAGATTTTGTGAA+GGG + chr7_2:64001893-64001912 None:intergenic 30.0%
! AAAACCTCTAGATTTTGTGA+AGG + chr7_2:64001894-64001913 None:intergenic 30.0%
ATACTAATCAGTTAGGAAGA+GGG + chr7_2:64001960-64001979 None:intergenic 30.0%
AATACTAATCAGTTAGGAAG+AGG + chr7_2:64001961-64001980 None:intergenic 30.0%
TTGCAGCATAATATAAGAAG+AGG + chr7_2:64002158-64002177 None:intergenic 30.0%
GCGTAAATTACTACACTAAA+AGG + chr7_2:64002304-64002323 None:intergenic 30.0%
!! AATAAGTGTGAATGGGTTAT+AGG + chr7_2:64002608-64002627 None:intergenic 30.0%
!! AACCCATTCACACTTATTTT+TGG - chr7_2:64002610-64002629 Msa1068790:intron 30.0%
TGCCAAAAATAAGTGTGAAT+GGG + chr7_2:64002615-64002634 None:intergenic 30.0%
TTGCCAAAAATAAGTGTGAA+TGG + chr7_2:64002616-64002635 None:intergenic 30.0%
!!! ACACTTATTTTTGGCAATTC+TGG - chr7_2:64002619-64002638 Msa1068790:intron 30.0%
!!! CACTTATTTTTGGCAATTCT+GGG - chr7_2:64002620-64002639 Msa1068790:intron 30.0%
!!! ACTTATTTTTGGCAATTCTG+GGG - chr7_2:64002621-64002640 Msa1068790:intron 30.0%
! GTGAGTATAAAGCATTAAAG+GGG + chr7_2:64002650-64002669 None:intergenic 30.0%
TTGTGTATTCAATTGTTTGC+AGG + chr7_2:64002678-64002697 None:intergenic 30.0%
! TTTTCCATCATGACAAAGAA+AGG - chr7_2:64002733-64002752 Msa1068790:intron 30.0%
TTTCCATCATGACAAAGAAA+GGG - chr7_2:64002734-64002753 Msa1068790:intron 30.0%
CTTTGCACTGAAGTATAAAA+TGG - chr7_2:64003005-64003024 Msa1068790:intron 30.0%
GGAATCACAGCAATATAATT+GGG - chr7_2:64003100-64003119 Msa1068790:intron 30.0%
CCAAATTCTGTTTCAAATAC+AGG + chr7_2:64003287-64003306 None:intergenic 30.0%
! CCTGTATTTGAAACAGAATT+TGG - chr7_2:64003284-64003303 Msa1068790:five_prime_UTR 30.0%
! TGTTAAACTTTTGGCATGAA+TGG - chr7_2:64003353-64003372 Msa1068790:five_prime_UTR 30.0%
ACAAGGGTTGAAAACAATTT+CGG + chr7_2:64003381-64003400 None:intergenic 30.0%
ATAAAACAACTGACCTCTAT+TGG + chr7_2:64003437-64003456 None:intergenic 30.0%
!! GGTCAGTTGTTTTATATTGA+TGG - chr7_2:64003442-64003461 Msa1068790:intron 30.0%
AAAGACGGTTTAGAGAAATA+TGG + chr7_2:64003541-64003560 None:intergenic 30.0%
ATATGCTACTGTCATTAACT+TGG - chr7_2:64003656-64003675 Msa1068790:five_prime_UTR 30.0%
CTACTACTGTGTCAATAATT+CGG + chr7_2:64003963-64003982 None:intergenic 30.0%
ATGAATATGGGAGAAGAATT+AGG + chr7_2:64004241-64004260 None:intergenic 30.0%
GGAAACTTGTCTATGAATAT+GGG + chr7_2:64004253-64004272 None:intergenic 30.0%
TGGAAACTTGTCTATGAATA+TGG + chr7_2:64004254-64004273 None:intergenic 30.0%
TAGCAAAATTAAAGCATGTG+GGG + chr7_2:64004311-64004330 None:intergenic 30.0%
! GTATTTTCTCTTCCAAATAG+TGG - chr7_2:64004352-64004371 Msa1068790:intron 30.0%
CGCAGCAAAATTTAAAGATA+AGG + chr7_2:64004409-64004428 None:intergenic 30.0%
TATATACGTTATGGCAGTAA+AGG - chr7_2:64004454-64004473 Msa1068790:intron 30.0%
ATATACGTTATGGCAGTAAA+GGG - chr7_2:64004455-64004474 Msa1068790:intron 30.0%
AGGTTGTGAGAAATTACATA+AGG + chr7_2:64004524-64004543 None:intergenic 30.0%
! AGTCTTTGCTATATCCTTAA+GGG + chr7_2:64004551-64004570 None:intergenic 30.0%
! AAGTCTTTGCTATATCCTTA+AGG + chr7_2:64004552-64004571 None:intergenic 30.0%
! AATAATGTTTGAAACCTCCT+AGG + chr7_2:64004750-64004769 None:intergenic 30.0%
ATTTCGTTTAAGAAATGGAG+AGG + chr7_2:64004826-64004845 None:intergenic 30.0%
AAAAACAGTCTACTGCTTGA+TGG - chr7_2:64001834-64001853 Msa1068790:three_prime_UTR 35.0%
! AACCTCTAGATTTTGTGAAG+GGG + chr7_2:64001892-64001911 None:intergenic 35.0%
TACTAATCAGTTAGGAAGAG+GGG + chr7_2:64001959-64001978 None:intergenic 35.0%
! GGCATTGGAACATATTAATG+AGG - chr7_2:64002064-64002083 Msa1068790:CDS 35.0%
TGAAAGCAGAAGCTCTTTAA+TGG - chr7_2:64002126-64002145 Msa1068790:intron 35.0%
GTTAACCAACTCGAATCAAT+TGG + chr7_2:64002326-64002345 None:intergenic 35.0%
ATATCAGCTGAGTAGATATG+AGG - chr7_2:64002357-64002376 Msa1068790:CDS 35.0%
GAAATATCCATAGCAGCAAT+TGG + chr7_2:64002436-64002455 None:intergenic 35.0%
AAGTTGTCTACTTCAGACTA+TGG - chr7_2:64002467-64002486 Msa1068790:intron 35.0%
!!! CTTATTTTTGGCAATTCTGG+GGG - chr7_2:64002622-64002641 Msa1068790:intron 35.0%
TTTCCCTTTCTTTGTCATGA+TGG + chr7_2:64002740-64002759 None:intergenic 35.0%
CATGACAAAGAAAGGGAAAA+AGG - chr7_2:64002741-64002760 Msa1068790:intron 35.0%
ACACTTTATCGACCAAGAAA+AGG - chr7_2:64002822-64002841 Msa1068790:intron 35.0%
! TCTCAAAGATAGCCTTTTCT+TGG + chr7_2:64002837-64002856 None:intergenic 35.0%
! GAATTTTGGATGATGCCATT+TGG - chr7_2:64002907-64002926 Msa1068790:intron 35.0%
AATTTGCAGAACCTGTTGAT+GGG - chr7_2:64002959-64002978 Msa1068790:intron 35.0%
TTATAAGCCCATTTCTTGAG+AGG - chr7_2:64003031-64003050 Msa1068790:intron 35.0%
TATAAGCCCATTTCTTGAGA+GGG - chr7_2:64003032-64003051 Msa1068790:intron 35.0%
TCATATCCCTCTCAAGAAAT+GGG + chr7_2:64003041-64003060 None:intergenic 35.0%
TTCATATCCCTCTCAAGAAA+TGG + chr7_2:64003042-64003061 None:intergenic 35.0%
GGGAATCACAGCAATATAAT+TGG - chr7_2:64003099-64003118 Msa1068790:intron 35.0%
GCAATATAATTGGGATACAC+AGG - chr7_2:64003109-64003128 Msa1068790:intron 35.0%
TATAATTGGGATACACAGGA+AGG - chr7_2:64003113-64003132 Msa1068790:intron 35.0%
CTTTCTACTTCCACTTCTAA+TGG - chr7_2:64003149-64003168 Msa1068790:intron 35.0%
! CACTGAGAGTGCATATTATA+TGG - chr7_2:64003244-64003263 Msa1068790:exon 35.0%
! GAGAGTGCATATTATATGGA+AGG - chr7_2:64003248-64003267 Msa1068790:five_prime_UTR 35.0%
TGAAGCAAGTACTTCAAAGA+CGG + chr7_2:64003556-64003575 None:intergenic 35.0%
! CAATAACCGATCTGATGTTT+TGG - chr7_2:64003859-64003878 Msa1068790:intron 35.0%
CAAAGACCAAAACATCAGAT+CGG + chr7_2:64003868-64003887 None:intergenic 35.0%
GATATAGAGTTTGTGTACTG+TGG - chr7_2:64003893-64003912 Msa1068790:intron 35.0%
ATCTCAATATGCTTCACTAC+AGG - chr7_2:64004095-64004114 Msa1068790:intron 35.0%
AATATGCTTCACTACAGGTA+TGG - chr7_2:64004100-64004119 Msa1068790:intron 35.0%
GAAGAATTAGGATAGTTTGG+AGG + chr7_2:64004229-64004248 None:intergenic 35.0%
GGAGAAGAATTAGGATAGTT+TGG + chr7_2:64004232-64004251 None:intergenic 35.0%
AAAATGTTCCATGATCTCAC+CGG + chr7_2:64004285-64004304 None:intergenic 35.0%
AGCAAAATTAAAGCATGTGG+GGG + chr7_2:64004310-64004329 None:intergenic 35.0%
ACCAAATTGTTGTGCATACT+CGG + chr7_2:64004602-64004621 None:intergenic 35.0%
!!! GACCTTTTTAATTTTGGCCT+AGG - chr7_2:64004730-64004749 Msa1068790:five_prime_UTR 35.0%
CTCCTAGGCCAAAATTAAAA+AGG + chr7_2:64004735-64004754 None:intergenic 35.0%
!!! CTTTTTAATTTTGGCCTAGG+AGG - chr7_2:64004733-64004752 Msa1068790:five_prime_UTR 35.0%
TTCCCCTTCACAAAATCTAG+AGG - chr7_2:64001887-64001906 Msa1068790:three_prime_UTR 40.0%
ACTAATCAGTTAGGAAGAGG+GGG + chr7_2:64001958-64001977 None:intergenic 40.0%
AGCAGAAGCTCTTTAATGGT+TGG - chr7_2:64002130-64002149 Msa1068790:intron 40.0%
!! TTACGCCAATTGATTCGAGT+TGG - chr7_2:64002318-64002337 Msa1068790:intron 40.0%
TGATTGTCCAATTGCTGCTA+TGG - chr7_2:64002426-64002445 Msa1068790:intron 40.0%
TTGTCTACTTCAGACTATGG+TGG - chr7_2:64002470-64002489 Msa1068790:intron 40.0%
CTTAAAGCCTACTTTCACCT+AGG - chr7_2:64002505-64002524 Msa1068790:intron 40.0%
AAGCTTTCCTAGGTGAAAGT+AGG + chr7_2:64002515-64002534 None:intergenic 40.0%
!! TCACCTAGGAAAGCTTTAAG+AGG - chr7_2:64002519-64002538 Msa1068790:intron 40.0%
!! CACCTAGGAAAGCTTTAAGA+GGG - chr7_2:64002520-64002539 Msa1068790:intron 40.0%
TTAAGAGGGTCTTTCTTTGC+TGG - chr7_2:64002534-64002553 Msa1068790:intron 40.0%
! CAGACACCTTTTCTTCTTGT+TGG + chr7_2:64002561-64002580 None:intergenic 40.0%
TCTCGTGTAGAGAAACCAAA+TGG + chr7_2:64002925-64002944 None:intergenic 40.0%
GAATTTGCAGAACCTGTTGA+TGG - chr7_2:64002958-64002977 Msa1068790:intron 40.0%
ATTTGCAGAACCTGTTGATG+GGG - chr7_2:64002960-64002979 Msa1068790:intron 40.0%
ACGGTCTATTCCATTAGAAG+TGG + chr7_2:64003162-64003181 None:intergenic 40.0%
CAGAACCATGTAACAAGAGT+CGG - chr7_2:64003215-64003234 Msa1068790:CDS 40.0%
! TGCTACTGTCATTAACTTGG+TGG - chr7_2:64003659-64003678 Msa1068790:five_prime_UTR 40.0%
! GTCATTAACTTGGTGGCATT+TGG - chr7_2:64003666-64003685 Msa1068790:five_prime_UTR 40.0%
!!! CGATCTGATGTTTTGGTCTT+TGG - chr7_2:64003866-64003885 Msa1068790:intron 40.0%
ACAAGTTTCCAGTTGAATCC+CGG - chr7_2:64004263-64004282 Msa1068790:intron 40.0%
AAATGTTCCATGATCTCACC+GGG + chr7_2:64004284-64004303 None:intergenic 40.0%
TTGTGTAGACTGCCACTATT+TGG + chr7_2:64004367-64004386 None:intergenic 40.0%
TTATGGCAGTAAAGGGAATG+AGG - chr7_2:64004462-64004481 Msa1068790:intron 40.0%
GCTATATCCTTAAGGGACAT+AGG + chr7_2:64004544-64004563 None:intergenic 40.0%
TCCGAGTATGCACAACAATT+TGG - chr7_2:64004598-64004617 Msa1068790:five_prime_UTR 40.0%
GAGTATGCACAACAATTTGG+TGG - chr7_2:64004601-64004620 Msa1068790:five_prime_UTR 40.0%
! TATGCACAACAATTTGGTGG+AGG - chr7_2:64004604-64004623 Msa1068790:five_prime_UTR 40.0%
!! GGAACATTCAGCTCTAAGTA+TGG - chr7_2:64004625-64004644 Msa1068790:five_prime_UTR 40.0%
!! TCAGCTCTAAGTATGGAGAA+TGG - chr7_2:64004632-64004651 Msa1068790:five_prime_UTR 40.0%
AACATCCTCTGATGCAGAGA+GGG - chr7_2:64002043-64002062 Msa1068790:CDS 45.0%
TCAGCTGAGTAGATATGAGG+AGG - chr7_2:64002360-64002379 Msa1068790:CDS 45.0%
GACCCTCTTAAAGCTTTCCT+AGG + chr7_2:64002525-64002544 None:intergenic 45.0%
GCTGGACCAACAAGAAGAAA+AGG - chr7_2:64002552-64002571 Msa1068790:intron 45.0%
TCTCTACACGAGAGAAGAAG+TGG - chr7_2:64002932-64002951 Msa1068790:intron 45.0%
! TCAGTTGATTCCCCATCAAC+AGG + chr7_2:64002973-64002992 None:intergenic 45.0%
CTTGAGAGGGATATGAACCA+CGG - chr7_2:64003045-64003064 Msa1068790:intron 45.0%
TGAACCACGGAGAGGTTATT+TGG - chr7_2:64003058-64003077 Msa1068790:intron 45.0%
TGTTCCAAATAACCTCTCCG+TGG + chr7_2:64003065-64003084 None:intergenic 45.0%
GCTGTGATTCCCAATCACAA+CGG + chr7_2:64003091-64003110 None:intergenic 45.0%
AGTCTCCGACTCTTGTTACA+TGG + chr7_2:64003223-64003242 None:intergenic 45.0%
TTCAGTGAGTTCACCAACAG+TGG + chr7_2:64003405-64003424 None:intergenic 45.0%
GTGAACTCACTGAAGCAATG+TGG - chr7_2:64003411-64003430 Msa1068790:intron 45.0%
TGAAGCAATGTGGCCAATAG+AGG - chr7_2:64003421-64003440 Msa1068790:intron 45.0%
TAGAGTTTGTGTACTGTGGC+AGG - chr7_2:64003897-64003916 Msa1068790:intron 45.0%
! GCAGGTTAATCATGCCCTTT+TGG - chr7_2:64003915-64003934 Msa1068790:intron 45.0%
AGGCTGAATAGGTGACTGTA+AGG + chr7_2:64004191-64004210 None:intergenic 45.0%
CTCACAACCTATGTCCCTTA+AGG - chr7_2:64004534-64004553 Msa1068790:five_prime_UTR 45.0%
CTCTAAGTATGGAGAATGGC+AGG - chr7_2:64004636-64004655 Msa1068790:five_prime_UTR 45.0%
AATGGCAGGAGTTCACATCT+TGG - chr7_2:64004650-64004669 Msa1068790:five_prime_UTR 45.0%
ATGGCAGGAGTTCACATCTT+GGG - chr7_2:64004651-64004670 Msa1068790:five_prime_UTR 45.0%
AATCAGTTAGGAAGAGGGGG+TGG + chr7_2:64001955-64001974 None:intergenic 50.0%
GAACATCCTCTGATGCAGAG+AGG - chr7_2:64002042-64002061 Msa1068790:CDS 50.0%
TGGAACACTGCCGTTGTGAT+TGG - chr7_2:64003078-64003097 Msa1068790:intron 50.0%
GGAACACTGCCGTTGTGATT+GGG - chr7_2:64003079-64003098 Msa1068790:intron 50.0%
! TTCAACCCTTGTGCCACTGT+TGG - chr7_2:64003389-64003408 Msa1068790:intron 50.0%
GTTCACCAACAGTGGCACAA+GGG + chr7_2:64003397-64003416 None:intergenic 50.0%
AGTTCACCAACAGTGGCACA+AGG + chr7_2:64003398-64003417 None:intergenic 50.0%
!! AAAGATGGGCTGAGAGACAC+AGG + chr7_2:64004072-64004091 None:intergenic 50.0%
TGATCTCACCGGGATTCAAC+TGG + chr7_2:64004274-64004293 None:intergenic 50.0%
GTTGAATCCCGGTGAGATCA+TGG - chr7_2:64004274-64004293 Msa1068790:intron 50.0%
ACTTGTGATCCTACTGCTCG+CGG - chr7_2:64004568-64004587 Msa1068790:five_prime_UTR 50.0%
GAAATAACACCGCGAGCAGT+AGG + chr7_2:64004580-64004599 None:intergenic 50.0%
CAATGCCCTCTCTGCATCAG+AGG + chr7_2:64002051-64002070 None:intergenic 55.0%
! CTCTGATGCAGAGAGGGCAT+TGG - chr7_2:64002049-64002068 Msa1068790:CDS 55.0%
GAGGGATATGAACCACGGAG+AGG - chr7_2:64003050-64003069 Msa1068790:intron 55.0%
! CTGCTGCTGAGTGGGTTCAT+GGG - chr7_2:64004022-64004041 Msa1068790:intron 55.0%
AGCAAGCGCAGAGGCTGAAT+AGG + chr7_2:64004202-64004221 None:intergenic 55.0%
TATTCAGCCTCTGCGCTTGC+TGG - chr7_2:64004201-64004220 Msa1068790:intron 55.0%
AGCTGCTGCTGCTGCTGAGT+GGG - chr7_2:64004014-64004033 Msa1068790:intron 60.0%
! GCTGCTGCTGAGTGGGTTCA+TGG - chr7_2:64004021-64004040 Msa1068790:intron 60.0%
CAGCTGCTGCTGCTGCTGAG+TGG - chr7_2:64004013-64004032 Msa1068790:intron 65.0%
GGAGGAACCAGCAAGCGCAG+AGG + chr7_2:64004211-64004230 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 64001745 64004869 64001745 ID=Msa1068790;Name=Msa1068790
chr7_2 mRNA 64001745 64004869 64001745 ID=Msa1068790-mRNA-1;Parent=Msa1068790;Name=Msa1068790-mRNA-1;_AED=0.15;_eAED=0.15;_QI=767|0.75|1|1|0.25|0.6|5|176|128
chr7_2 exon 64001745 64002143 64001745 ID=Msa1068790-mRNA-1:exon:13319;Parent=Msa1068790-mRNA-1
chr7_2 exon 64002330 64002418 64002330 ID=Msa1068790-mRNA-1:exon:13318;Parent=Msa1068790-mRNA-1
chr7_2 exon 64003172 64003382 64003172 ID=Msa1068790-mRNA-1:exon:13317;Parent=Msa1068790-mRNA-1
chr7_2 exon 64003480 64003707 64003480 ID=Msa1068790-mRNA-1:exon:13316;Parent=Msa1068790-mRNA-1
chr7_2 exon 64004467 64004869 64004467 ID=Msa1068790-mRNA-1:exon:13315;Parent=Msa1068790-mRNA-1
chr7_2 five_prime_UTR 64004467 64004869 64004467 ID=Msa1068790-mRNA-1:five_prime_utr;Parent=Msa1068790-mRNA-1
chr7_2 five_prime_UTR 64003480 64003707 64003480 ID=Msa1068790-mRNA-1:five_prime_utr;Parent=Msa1068790-mRNA-1
chr7_2 five_prime_UTR 64003247 64003382 64003247 ID=Msa1068790-mRNA-1:five_prime_utr;Parent=Msa1068790-mRNA-1
chr7_2 CDS 64003172 64003246 64003172 ID=Msa1068790-mRNA-1:cds;Parent=Msa1068790-mRNA-1
chr7_2 CDS 64002330 64002418 64002330 ID=Msa1068790-mRNA-1:cds;Parent=Msa1068790-mRNA-1
chr7_2 CDS 64001921 64002143 64001921 ID=Msa1068790-mRNA-1:cds;Parent=Msa1068790-mRNA-1
chr7_2 three_prime_UTR 64001745 64001920 64001745 ID=Msa1068790-mRNA-1:three_prime_utr;Parent=Msa1068790-mRNA-1
Gene Sequence

>Msa1068790

ATGAATGGCGCCGAAATTGTTTTCAACCCTTGTGCCACTGTTGGTGAACTCACTGAAGCAATGTGGCCAATAGAGTCACCTATTCAGCCTCTGCGCTTGCTGGTTCCTCCAAACTATCCTAATTCTTCTCCCATATTCATAGACAAGTTTCCAGTTGAATCCCGTAAAGGGAATGAGGATCTTTCAGAGAAAGCAAAAGTGAAGCTTAGCATGTCCTTATGTAATTTCTCACAACCTATGTCCCTTAAGGATATAGCAAAGACTTGTGATCCTACTGCTCGCGGTGTTATTTCCGAGTATGCACAACAATTTGGTGGAGGAACATTCAGCTCTAAGTATGGAGAATGGCAGGAGTTCACATCTTGGGAAGATTTGTTAGCTGCATAA
Protein sequence

>Msa1068790

MNGAEIVFNPCATVGELTEAMWPIESPIQPLRLLVPPNYPNSSPIFIDKFPVESRKGNEDLSEKAKVKLSMSLCNFSQPMSLKDIAKTCDPTARGVISEYAQQFGGGTFSSKYGEWQEFTSWEDLLAA*