AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0541560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0541560 MtrunA17_Chr8g0385961 98.718 312 4 0 1 312 1 312 0.0 649
Msa0541560 MtrunA17_Chr1g0156031 48.857 350 131 11 1 312 1 340 7.04e-105 310
Msa0541560 MtrunA17_Chr6g0479911 52.336 107 51 0 206 312 183 289 4.41e-43 149
Msa0541560 MtrunA17_Chr8g0375531 53.846 104 48 0 209 312 177 280 1.13e-39 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0541560 AT2G21240.1 57.962 314 112 5 1 312 1 296 6.08e-127 364
Msa0541560 AT2G21240.2 57.962 314 112 5 1 312 1 296 6.08e-127 364
Msa0541560 AT4G38910.2 54.487 312 113 6 1 312 1 283 3.42e-114 332
Msa0541560 AT4G38910.1 55.872 281 97 5 33 312 4 258 6.95e-104 304
Msa0541560 AT5G42520.2 47.619 357 123 11 1 312 1 338 7.47e-90 271
Msa0541560 AT5G42520.1 47.619 357 127 12 1 312 1 342 8.94e-90 271
Msa0541560 AT5G42520.3 48.936 282 99 8 76 312 1 282 2.72e-76 235
Msa0541560 AT2G35550.2 45.806 155 77 1 165 312 72 226 1.64e-45 154
Msa0541560 AT2G35550.4 45.806 155 77 1 165 312 72 226 1.64e-45 154
Msa0541560 AT2G35550.3 45.806 155 77 1 165 312 72 226 1.64e-45 154
Msa0541560 AT2G35550.1 45.806 155 77 1 165 312 117 271 2.32e-45 155
Msa0541560 AT1G14685.1 52.137 117 56 0 196 312 163 279 3.33e-44 152
Msa0541560 AT1G14685.4 52.137 117 56 0 196 312 163 279 3.33e-44 152
Msa0541560 AT1G14685.3 52.137 117 56 0 196 312 163 279 3.33e-44 152
Msa0541560 AT1G14685.2 52.137 117 56 0 196 312 163 279 3.33e-44 152
Msa0541560 AT1G68120.1 55.769 104 46 0 209 312 166 269 1.12e-41 145
Msa0541560 AT2G01930.2 52.336 107 51 0 206 312 177 283 6.34e-41 144
Msa0541560 AT2G01930.1 52.336 107 51 0 206 312 177 283 6.34e-41 144

Find 114 sgRNAs with CRISPR-Local

Find 616 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGTTTATTTCTAGTTAC+TGG 0.160666 4_1:+25550203 Msa0541560:three_prime_UTR
ACCTACCAAAATAAAGAAAA+TGG 0.208626 4_1:+25549649 Msa0541560:CDS
CTTCTGTCATGTTGGATATA+TGG 0.216505 4_1:-25549508 None:intergenic
ATCTATACCATTGGATCTTA+AGG 0.242442 4_1:+25549991 Msa0541560:CDS
TTACAGCAATCGCATTTAAA+AGG 0.255052 4_1:-25550248 None:intergenic
TCAGAAGTTATAACAGTAAC+TGG 0.272157 4_1:-25549572 None:intergenic
CATTGGATCTTAAGGATTAC+TGG 0.283657 4_1:+25549999 Msa0541560:CDS
GATTAGTAATGTACAGAAAA+AGG 0.297885 4_1:-25550335 None:intergenic
TTTGTTCCTTTATTTGATGC+TGG 0.301136 4_1:-25549205 None:intergenic
TGGTGATAGGCGGTCTAAAA+AGG 0.310805 4_1:-25550095 None:intergenic
TTGCAACAGATGCGGTAAAT+TGG 0.345909 4_1:-25548987 None:intergenic
ACTCCAGTACACGTGCAAAC+TGG 0.357093 4_1:-25549785 None:intergenic
TTGTTCCTTTATTTGATGCT+GGG 0.361945 4_1:-25549204 None:intergenic
AAATGGGCGAGGATTTAAAT+AGG 0.362648 4_1:+25549666 Msa0541560:CDS
TCTACATTTATAAAATTCAA+TGG 0.388885 4_1:+25550401 Msa0541560:three_prime_UTR
CTACATTTATAAAATTCAAT+GGG 0.390303 4_1:+25550402 Msa0541560:three_prime_UTR
GTAACGATTTGTTCCATGTC+TGG 0.409057 4_1:-25550023 None:intergenic
GTCCCAGTTTGCACGTGTAC+TGG 0.410401 4_1:+25549782 Msa0541560:CDS
CGTTGAATTCCACCATTGAA+TGG 0.413813 4_1:-25549455 None:intergenic
CAGTACTATTCCGACTTTGA+AGG 0.424329 4_1:-25549424 None:intergenic
ATGCGAGCATGGCGCTTGTT+CGG 0.428637 4_1:-25549896 None:intergenic
TGCCTGCCTTTCAGCCATAA+TGG 0.435049 4_1:-25549258 None:intergenic
ACCACGACAGTGCTACAAAT+GGG 0.437083 4_1:+25549808 Msa0541560:CDS
AAGCGCCATGCTCGCATTGG+AGG 0.439433 4_1:+25549902 Msa0541560:CDS
GGATCCCCAGCATCAAATAA+AGG 0.448615 4_1:+25549199 Msa0541560:CDS
GGATAATGCTCTACTGGAAC+GGG 0.450868 4_1:+25549385 Msa0541560:CDS
AGTAACTAGAAATAAACAAA+GGG 0.452868 4_1:-25550201 None:intergenic
CTCCAGTACACGTGCAAACT+GGG 0.457013 4_1:-25549784 None:intergenic
ACTGGCAACTTTCCATTCAA+TGG 0.459914 4_1:+25549443 Msa0541560:CDS
ATCTGAAAAGAATGAAGCCC+TGG 0.461756 4_1:+25549313 Msa0541560:CDS
GCATCTGTTGCAAAATCCTC+TGG 0.471306 4_1:+25548997 Msa0541560:five_prime_UTR
GACAAAGATCAAATCTGAAT+GGG 0.471460 4_1:+25549706 Msa0541560:CDS
GTGCTTCATCCCTCTGCCGA+AGG 0.475401 4_1:-25549352 None:intergenic
CAAATCTGAATGGGATAGGC+AGG 0.475987 4_1:+25549715 Msa0541560:CDS
GTCCATTATGGCTGAAAGGC+AGG 0.476045 4_1:+25549256 Msa0541560:CDS
CCATGATTTATCTATACCAT+TGG 0.476445 4_1:+25549982 Msa0541560:CDS
GGACAAAGATCAAATCTGAA+TGG 0.478623 4_1:+25549705 Msa0541560:CDS
TGGATATATGGTTTGAAGAA+TGG 0.483617 4_1:-25549496 None:intergenic
AACAAGCGCCATGCTCGCAT+TGG 0.488361 4_1:+25549899 Msa0541560:CDS
TCCGCCCTCCAATGCGAGCA+TGG 0.489587 4_1:-25549907 None:intergenic
ACTCGAAACAAATGAATGTC+AGG 0.491577 4_1:-25550064 None:intergenic
CCTACCAAAATAAAGAAAAT+GGG 0.492634 4_1:+25549650 Msa0541560:CDS
TGAAGAATGGTGCATCCGCT+TGG 0.493558 4_1:-25549483 None:intergenic
TACCACGACAGTGCTACAAA+TGG 0.496139 4_1:+25549807 Msa0541560:CDS
GGATGAAGCACTTGCTCAGA+AGG 0.502842 4_1:+25549364 Msa0541560:CDS
AATAGGAAGGCTTATTCTGA+AGG 0.504268 4_1:+25549683 Msa0541560:CDS
TCAGAAGGATAATGCTCTAC+TGG 0.507617 4_1:+25549379 Msa0541560:CDS
TGCTTGAGTTTAGCGCATGC+AGG 0.511532 4_1:+25550153 Msa0541560:three_prime_UTR
CTCAGTAGGTTTGCATCAGA+AGG 0.511971 4_1:+25549959 Msa0541560:CDS
TGAAAACGGTAGGCATAAGA+TGG 0.514492 4_1:+25549047 Msa0541560:CDS
AGCGCCATGCTCGCATTGGA+GGG 0.517752 4_1:+25549903 Msa0541560:CDS
GGGCTACGTCTCGAGCAGCC+AGG 0.518686 4_1:-25549331 None:intergenic
CTTCAAAGTCGGAATAGTAC+TGG 0.519466 4_1:+25549425 Msa0541560:CDS
TGTTCCTTTATTTGATGCTG+GGG 0.520374 4_1:-25549203 None:intergenic
AGTACTATTCCGACTTTGAA+GGG 0.520694 4_1:-25549423 None:intergenic
ATATGCTGCTTCTGTCATGT+TGG 0.532878 4_1:-25549516 None:intergenic
AGATCAAATCTGAATGGGAT+AGG 0.533258 4_1:+25549711 Msa0541560:CDS
TTGTTCGGAAGCTGTGGTAG+TGG 0.541295 4_1:-25549881 None:intergenic
CAAAATAAAGAAAATGGGCG+AGG 0.545395 4_1:+25549655 Msa0541560:CDS
GAGACGTAGCCCTTCGGCAG+AGG 0.546456 4_1:+25549342 Msa0541560:CDS
CCAATGGTATAGATAAATCA+TGG 0.547636 4_1:-25549982 None:intergenic
GGCTACGTCTCGAGCAGCCA+GGG 0.552588 4_1:-25549330 None:intergenic
CCCCATTTGTAGCACTGTCG+TGG 0.555932 4_1:-25549809 None:intergenic
ATTGGTCTCAAGAAGTCTTG+AGG 0.556886 4_1:-25548969 None:intergenic
CAGAAGTTATAACAGTAACT+GGG 0.557616 4_1:-25549571 None:intergenic
TTTAAATGTGCAGTGGAATG+TGG 0.558628 4_1:+25549178 Msa0541560:intron
CTGCTCGAGACGTAGCCCTT+CGG 0.563490 4_1:+25549336 Msa0541560:CDS
CTACAGAGGAGCACATTCCC+TGG 0.565304 4_1:+25549074 Msa0541560:CDS
AGACGTAGCCCTTCGGCAGA+GGG 0.565616 4_1:+25549343 Msa0541560:CDS
AGAACTTACAGCTACAGAAA+CGG 0.566961 4_1:-25546411 None:intergenic
ATGACACGGGTGAGGAAGGA+AGG 0.569855 4_1:+25546334 Msa0541560:five_prime_UTR
GGGCGAGGATTTAAATAGGA+AGG 0.570874 4_1:+25549670 Msa0541560:CDS
CTCTTGCAGCCCTTCAAAGT+CGG 0.574408 4_1:+25549414 Msa0541560:CDS
GATGACCACCAATATGAAAA+CGG 0.575020 4_1:+25549033 Msa0541560:CDS
AAGGATTACTGGGCCAGACA+TGG 0.576589 4_1:+25550010 Msa0541560:CDS
GCCATGCTCGCATTGGAGGG+CGG 0.577730 4_1:+25549906 Msa0541560:CDS
TGCTTCATCCCTCTGCCGAA+GGG 0.577861 4_1:-25549351 None:intergenic
CTGTAATCAAAACCATGCCT+TGG 0.580020 4_1:+25550119 Msa0541560:three_prime_UTR
AGGATAATGCTCTACTGGAA+CGG 0.583003 4_1:+25549384 Msa0541560:CDS
AAACATGACACGGGTGAGGA+AGG 0.583722 4_1:+25546330 Msa0541560:five_prime_UTR
GTACACGTGCAAACTGGGAC+AGG 0.585669 4_1:-25549779 None:intergenic
ATAGGAAGGCTTATTCTGAA+GGG 0.587900 4_1:+25549684 Msa0541560:CDS
ATTGGATCTTAAGGATTACT+GGG 0.588784 4_1:+25550000 Msa0541560:CDS
TCTTCTTGAACTTGAACTAG+AGG 0.590105 4_1:+25549283 Msa0541560:CDS
TTAGGTCCATTATGGCTGAA+AGG 0.590519 4_1:+25549252 Msa0541560:CDS
ATATCTTGCTGACCAAGGCA+TGG 0.593773 4_1:-25550131 None:intergenic
GAATGGGATAGGCAGGATGT+TGG 0.593838 4_1:+25549722 Msa0541560:CDS
CAGTAATCCTTAAGATCCAA+TGG 0.595456 4_1:-25549998 None:intergenic
AAAATCCTCTGGATGCAAGA+TGG 0.605878 4_1:+25549008 Msa0541560:exon
GGCAACTTTCCATTCAATGG+TGG 0.607937 4_1:+25549446 Msa0541560:CDS
TGGCGCTTGTTCGGAAGCTG+TGG 0.609294 4_1:-25549887 None:intergenic
TGATTACAGCTGGTGATAGG+CGG 0.611104 4_1:-25550105 None:intergenic
GGGAAAACATGACACGGGTG+AGG 0.613798 4_1:+25546326 None:intergenic
CCACGACAGTGCTACAAATG+GGG 0.618535 4_1:+25549809 Msa0541560:CDS
ATCGTCCATCTTGCATCCAG+AGG 0.621489 4_1:-25549013 None:intergenic
CAGTAACTAGAAATAAACAA+AGG 0.621529 4_1:-25550202 None:intergenic
CATAAGATGGACTACTACAG+AGG 0.628336 4_1:+25549060 Msa0541560:CDS
CAAGCATATCTTGCTGACCA+AGG 0.631537 4_1:-25550136 None:intergenic
ATTGGAGGGCGGAAAATGAG+CGG 0.633747 4_1:+25549917 Msa0541560:CDS
AACTAGAAATAAACAAAGGG+GGG 0.635667 4_1:-25550198 None:intergenic
TACATTTATAAAATTCAATG+GGG 0.636608 4_1:+25550403 Msa0541560:three_prime_UTR
TAACTAGAAATAAACAAAGG+GGG 0.640263 4_1:-25550199 None:intergenic
TCATCTAACTAAGAGAACAA+AGG 0.650253 4_1:+25549607 Msa0541560:CDS
CACGACAGTGCTACAAATGG+GGG 0.651085 4_1:+25549810 Msa0541560:CDS
AGTTATAACAGTAACTGGGG+AGG 0.670600 4_1:-25549567 None:intergenic
TGGGAAGGGAAAACATGACA+CGG 0.674207 4_1:+25546320 None:intergenic
ACCACCAATATGAAAACGGT+AGG 0.675140 4_1:+25549037 Msa0541560:CDS
AGAAGTTATAACAGTAACTG+GGG 0.682187 4_1:-25549570 None:intergenic
GTAACTAGAAATAAACAAAG+GGG 0.686632 4_1:-25550200 None:intergenic
GGGAAGGGAAAACATGACAC+GGG 0.699552 4_1:+25546321 None:intergenic
TGGATGCATTGACAATGTAG+TGG 0.702687 4_1:-25549861 None:intergenic
GAATTCAACGTGGATCCAAG+CGG 0.708406 4_1:+25549468 Msa0541560:CDS
TTCAATGGTGGAATTCAACG+TGG 0.712678 4_1:+25549458 Msa0541560:CDS
AGAAGCAGCATATAGCACGA+CGG 0.752304 4_1:+25549526 Msa0541560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTATTCATAACTA+GGG - chr4_1:25549234-25549253 None:intergenic 10.0%
!!! TAATTTTTTTATTCATAACT+AGG - chr4_1:25549235-25549254 None:intergenic 10.0%
!! TAGTTATGAATAAAAAAATT+AGG + chr4_1:25549234-25549253 Msa0541560:CDS 10.0%
!! TATAAATGTAGAAAAATAAA+GGG - chr4_1:25550393-25550412 None:intergenic 10.0%
!! TTATAAATGTAGAAAAATAA+AGG - chr4_1:25550394-25550413 None:intergenic 10.0%
!!! AATTTTTTTATTCATAACTA+GGG - chr4_1:25549234-25549253 None:intergenic 10.0%
!!! TAATTTTTTTATTCATAACT+AGG - chr4_1:25549235-25549254 None:intergenic 10.0%
!! TAGTTATGAATAAAAAAATT+AGG + chr4_1:25549234-25549253 Msa0541560:CDS 10.0%
!! TATAAATGTAGAAAAATAAA+GGG - chr4_1:25550393-25550412 None:intergenic 10.0%
!! TTATAAATGTAGAAAAATAA+AGG - chr4_1:25550394-25550413 None:intergenic 10.0%
!! GAATAATAAAAATGGTAATT+GGG - chr4_1:25546518-25546537 None:intergenic 15.0%
!! AGAATAATAAAAATGGTAAT+TGG - chr4_1:25546519-25546538 None:intergenic 15.0%
!! AAAAAAACTATTTAAGGAAA+GGG - chr4_1:25547592-25547611 None:intergenic 15.0%
!! AAAAAAAACTATTTAAGGAA+AGG - chr4_1:25547593-25547612 None:intergenic 15.0%
!! TAATGTTAAAGACATATATA+TGG - chr4_1:25548133-25548152 None:intergenic 15.0%
!! TACAACTAATAAATTAAACT+TGG - chr4_1:25548798-25548817 None:intergenic 15.0%
!! TTTAAAAAATCAATAATCTC+TGG - chr4_1:25548949-25548968 None:intergenic 15.0%
!! TCTACATTTATAAAATTCAA+TGG + chr4_1:25550401-25550420 Msa0541560:three_prime_UTR 15.0%
!! CTACATTTATAAAATTCAAT+GGG + chr4_1:25550402-25550421 Msa0541560:three_prime_UTR 15.0%
!! TACATTTATAAAATTCAATG+GGG + chr4_1:25550403-25550422 Msa0541560:three_prime_UTR 15.0%
!! GAATAATAAAAATGGTAATT+GGG - chr4_1:25546518-25546537 None:intergenic 15.0%
!! AGAATAATAAAAATGGTAAT+TGG - chr4_1:25546519-25546538 None:intergenic 15.0%
!! AAAAAAACTATTTAAGGAAA+GGG - chr4_1:25547592-25547611 None:intergenic 15.0%
!! AAAAAAAACTATTTAAGGAA+AGG - chr4_1:25547593-25547612 None:intergenic 15.0%
!! TAATGTTAAAGACATATATA+TGG - chr4_1:25548133-25548152 None:intergenic 15.0%
!! TACAACTAATAAATTAAACT+TGG - chr4_1:25548798-25548817 None:intergenic 15.0%
!! TTTAAAAAATCAATAATCTC+TGG - chr4_1:25548949-25548968 None:intergenic 15.0%
!! TCTACATTTATAAAATTCAA+TGG + chr4_1:25550401-25550420 Msa0541560:three_prime_UTR 15.0%
!! CTACATTTATAAAATTCAAT+GGG + chr4_1:25550402-25550421 Msa0541560:three_prime_UTR 15.0%
!! TACATTTATAAAATTCAATG+GGG + chr4_1:25550403-25550422 Msa0541560:three_prime_UTR 15.0%
!! GGTTTAGAGAATAATAAAAA+TGG - chr4_1:25546526-25546545 None:intergenic 20.0%
!! TTTCATTTATTCCTCTTATT+TGG + chr4_1:25546906-25546925 Msa0541560:intron 20.0%
!! AATTAGTCACTGTTAAATTA+CGG + chr4_1:25547011-25547030 Msa0541560:intron 20.0%
!! AAAAAACTTTCAATTCAACA+CGG - chr4_1:25547100-25547119 None:intergenic 20.0%
!! AATATAAGATATGTGTACAA+TGG + chr4_1:25547979-25547998 Msa0541560:intron 20.0%
!!! ATTTCTTTGTTATTGTAGTT+TGG - chr4_1:25548549-25548568 None:intergenic 20.0%
!! ACTACAGTTAAATGAAAAAA+TGG + chr4_1:25548589-25548608 Msa0541560:intron 20.0%
!!! TTGTAAAAAGATTTTCTACA+AGG + chr4_1:25548813-25548832 Msa0541560:intron 20.0%
!! TAAAAAAATTAGGTCCATTA+TGG + chr4_1:25549244-25549263 Msa0541560:CDS 20.0%
!! AGTAACTAGAAATAAACAAA+GGG - chr4_1:25550204-25550223 None:intergenic 20.0%
!! GGTTTAGAGAATAATAAAAA+TGG - chr4_1:25546526-25546545 None:intergenic 20.0%
!! TTTCATTTATTCCTCTTATT+TGG + chr4_1:25546906-25546925 Msa0541560:intron 20.0%
!! AATTAGTCACTGTTAAATTA+CGG + chr4_1:25547011-25547030 Msa0541560:intron 20.0%
!! AAAAAACTTTCAATTCAACA+CGG - chr4_1:25547100-25547119 None:intergenic 20.0%
!! AATATAAGATATGTGTACAA+TGG + chr4_1:25547979-25547998 Msa0541560:intron 20.0%
!!! ATTTCTTTGTTATTGTAGTT+TGG - chr4_1:25548549-25548568 None:intergenic 20.0%
!! ACTACAGTTAAATGAAAAAA+TGG + chr4_1:25548589-25548608 Msa0541560:intron 20.0%
!!! TTGTAAAAAGATTTTCTACA+AGG + chr4_1:25548813-25548832 Msa0541560:intron 20.0%
!! TAAAAAAATTAGGTCCATTA+TGG + chr4_1:25549244-25549263 Msa0541560:CDS 20.0%
!! AGTAACTAGAAATAAACAAA+GGG - chr4_1:25550204-25550223 None:intergenic 20.0%
! ATTACATTACCTAGAAACAA+AGG - chr4_1:25546547-25546566 None:intergenic 25.0%
!! TATTTGTATGTACTGATGAA+TGG + chr4_1:25546768-25546787 Msa0541560:intron 25.0%
! AGAATGATGTGATCAAAATT+TGG + chr4_1:25546867-25546886 Msa0541560:intron 25.0%
!!! GTGTTGAATTGAAAGTTTTT+TGG + chr4_1:25547099-25547118 Msa0541560:intron 25.0%
! TTGACATGAATAACTAGTAT+TGG - chr4_1:25547147-25547166 None:intergenic 25.0%
! AATACTAGTTATTCATGTCA+AGG + chr4_1:25547146-25547165 Msa0541560:intron 25.0%
!!! GATTGATAGTCATATTCTTT+TGG + chr4_1:25547171-25547190 Msa0541560:intron 25.0%
! CATATTAGAATTTGAGCTTA+GGG + chr4_1:25548420-25548439 Msa0541560:intron 25.0%
!! ACTTTACAAGTAGATTTTGT+GGG - chr4_1:25548457-25548476 None:intergenic 25.0%
!! TACTTTACAAGTAGATTTTG+TGG - chr4_1:25548458-25548477 None:intergenic 25.0%
! TCTTATATCAAAAGAAAGAC+CGG - chr4_1:25548716-25548735 None:intergenic 25.0%
! ACCTACCAAAATAAAGAAAA+TGG + chr4_1:25549649-25549668 Msa0541560:CDS 25.0%
! CCTACCAAAATAAAGAAAAT+GGG + chr4_1:25549650-25549669 Msa0541560:CDS 25.0%
! TAACTAGAAATAAACAAAGG+GGG - chr4_1:25550202-25550221 None:intergenic 25.0%
! GTAACTAGAAATAAACAAAG+GGG - chr4_1:25550203-25550222 None:intergenic 25.0%
! CAGTAACTAGAAATAAACAA+AGG - chr4_1:25550205-25550224 None:intergenic 25.0%
!!! CTTTGTTTATTTCTAGTTAC+TGG + chr4_1:25550203-25550222 Msa0541560:three_prime_UTR 25.0%
! CGCATTTAAAAGGATAAAAA+TGG - chr4_1:25550241-25550260 None:intergenic 25.0%
!! TTTTCTAGGTGGTTTTTATT+TGG + chr4_1:25550296-25550315 Msa0541560:three_prime_UTR 25.0%
! GATTAGTAATGTACAGAAAA+AGG - chr4_1:25550338-25550357 None:intergenic 25.0%
! ATTACATTACCTAGAAACAA+AGG - chr4_1:25546547-25546566 None:intergenic 25.0%
!! TATTTGTATGTACTGATGAA+TGG + chr4_1:25546768-25546787 Msa0541560:intron 25.0%
! AGAATGATGTGATCAAAATT+TGG + chr4_1:25546867-25546886 Msa0541560:intron 25.0%
!!! GTGTTGAATTGAAAGTTTTT+TGG + chr4_1:25547099-25547118 Msa0541560:intron 25.0%
! TTGACATGAATAACTAGTAT+TGG - chr4_1:25547147-25547166 None:intergenic 25.0%
! AATACTAGTTATTCATGTCA+AGG + chr4_1:25547146-25547165 Msa0541560:intron 25.0%
!!! GATTGATAGTCATATTCTTT+TGG + chr4_1:25547171-25547190 Msa0541560:intron 25.0%
! CATATTAGAATTTGAGCTTA+GGG + chr4_1:25548420-25548439 Msa0541560:intron 25.0%
!! ACTTTACAAGTAGATTTTGT+GGG - chr4_1:25548457-25548476 None:intergenic 25.0%
!! TACTTTACAAGTAGATTTTG+TGG - chr4_1:25548458-25548477 None:intergenic 25.0%
! TCTTATATCAAAAGAAAGAC+CGG - chr4_1:25548716-25548735 None:intergenic 25.0%
! ACCTACCAAAATAAAGAAAA+TGG + chr4_1:25549649-25549668 Msa0541560:CDS 25.0%
! CCTACCAAAATAAAGAAAAT+GGG + chr4_1:25549650-25549669 Msa0541560:CDS 25.0%
! TAACTAGAAATAAACAAAGG+GGG - chr4_1:25550202-25550221 None:intergenic 25.0%
! GTAACTAGAAATAAACAAAG+GGG - chr4_1:25550203-25550222 None:intergenic 25.0%
! CAGTAACTAGAAATAAACAA+AGG - chr4_1:25550205-25550224 None:intergenic 25.0%
!!! CTTTGTTTATTTCTAGTTAC+TGG + chr4_1:25550203-25550222 Msa0541560:three_prime_UTR 25.0%
! CGCATTTAAAAGGATAAAAA+TGG - chr4_1:25550241-25550260 None:intergenic 25.0%
!! TTTTCTAGGTGGTTTTTATT+TGG + chr4_1:25550296-25550315 Msa0541560:three_prime_UTR 25.0%
! GATTAGTAATGTACAGAAAA+AGG - chr4_1:25550338-25550357 None:intergenic 25.0%
ATGGTAATTGGGAAAATACA+GGG - chr4_1:25546507-25546526 None:intergenic 30.0%
AATGGTAATTGGGAAAATAC+AGG - chr4_1:25546508-25546527 None:intergenic 30.0%
! TTCTCTAAACCTTTGTTTCT+AGG + chr4_1:25546535-25546554 Msa0541560:intron 30.0%
AGAGAATTAAAGGGGAAAAA+AGG - chr4_1:25546668-25546687 None:intergenic 30.0%
TGGAAAGAGAGAGAATTAAA+GGG - chr4_1:25546677-25546696 None:intergenic 30.0%
ATGGAAAGAGAGAGAATTAA+AGG - chr4_1:25546678-25546697 None:intergenic 30.0%
! GTACATTTGGTGAAACAAAA+TGG - chr4_1:25546697-25546716 None:intergenic 30.0%
!! TTTTGTTTCACCAAATGTAC+AGG + chr4_1:25546697-25546716 Msa0541560:intron 30.0%
TTTGTTTCACCAAATGTACA+GGG + chr4_1:25546698-25546717 Msa0541560:intron 30.0%
GCTTTATGTGTAATAGTGTA+TGG + chr4_1:25546839-25546858 Msa0541560:intron 30.0%
AATTACGGTGGATATTTCAT+AGG + chr4_1:25547026-25547045 Msa0541560:intron 30.0%
TTACAATAGACCATTAGCTA+AGG + chr4_1:25547069-25547088 Msa0541560:intron 30.0%
ATATGCAATTGAAAGTCGAT+AGG - chr4_1:25547265-25547284 None:intergenic 30.0%
CAATTTATAAGTTGTGTCTC+TGG + chr4_1:25547399-25547418 Msa0541560:intron 30.0%
GTGTATAGCTACATTAAGTA+AGG - chr4_1:25547457-25547476 None:intergenic 30.0%
TACATCAAATAGAACCACAA+GGG - chr4_1:25547515-25547534 None:intergenic 30.0%
TTACATCAAATAGAACCACA+AGG - chr4_1:25547516-25547535 None:intergenic 30.0%
TGTCCAGCTTATATTTGAAA+AGG + chr4_1:25547806-25547825 Msa0541560:intron 30.0%
GTCCAGCTTATATTTGAAAA+GGG + chr4_1:25547807-25547826 Msa0541560:intron 30.0%
TGTATTTGTGTCAAGTTCTA+GGG - chr4_1:25547912-25547931 None:intergenic 30.0%
TTCTAAATACATCACCTACT+GGG - chr4_1:25547950-25547969 None:intergenic 30.0%
GGTGATGTATTTAGAAGATT+TGG + chr4_1:25547954-25547973 Msa0541560:intron 30.0%
TATAGCCTACAAATGTAGTA+AGG + chr4_1:25548073-25548092 Msa0541560:intron 30.0%
AAAGTCCTTACTACATTTGT+AGG - chr4_1:25548081-25548100 None:intergenic 30.0%
! ACTTCACAAATTGATTCTGT+GGG - chr4_1:25548228-25548247 None:intergenic 30.0%
ACAGAATCAATTTGTGAAGT+GGG + chr4_1:25548228-25548247 Msa0541560:intron 30.0%
AAGTAGAGCTTATAAAGCTT+GGG - chr4_1:25548259-25548278 None:intergenic 30.0%
TAAGTAGAGCTTATAAAGCT+TGG - chr4_1:25548260-25548279 None:intergenic 30.0%
! AAGCTTTATAAGCTCTACTT+AGG + chr4_1:25548259-25548278 Msa0541560:intron 30.0%
ATATATATCTCTAGTCGAAG+TGG + chr4_1:25548284-25548303 Msa0541560:intron 30.0%
TATATATCTCTAGTCGAAGT+GGG + chr4_1:25548285-25548304 Msa0541560:intron 30.0%
! TTTTCCAGACTTCACATATA+TGG - chr4_1:25548341-25548360 None:intergenic 30.0%
CCTAAGCTCAAATTCTAATA+TGG - chr4_1:25548422-25548441 None:intergenic 30.0%
CCATATTAGAATTTGAGCTT+AGG + chr4_1:25548419-25548438 Msa0541560:intron 30.0%
TTTAAGTGTTCCACATTCAT+TGG - chr4_1:25548522-25548541 None:intergenic 30.0%
TGTAGTTTCTGTACACAAAA+AGG - chr4_1:25548575-25548594 None:intergenic 30.0%
GATGCATACAGTCATTAATA+TGG + chr4_1:25548611-25548630 Msa0541560:intron 30.0%
CAGTTCTATACAAGTTTAAC+CGG + chr4_1:25548694-25548713 Msa0541560:intron 30.0%
!!! AATTTTTTGGAAGGAACAAC+AGG - chr4_1:25548842-25548861 None:intergenic 30.0%
!! TGCTTTTCTCATTTGTTAAC+AGG + chr4_1:25548910-25548929 Msa0541560:intron 30.0%
!! ATTGGGTTGATTTATTGGAT+TGG + chr4_1:25549153-25549172 Msa0541560:intron 30.0%
! ATTGGATTTTAAATGTGCAG+TGG + chr4_1:25549171-25549190 Msa0541560:intron 30.0%
! TTGTTCCTTTATTTGATGCT+GGG - chr4_1:25549207-25549226 None:intergenic 30.0%
! TTTGTTCCTTTATTTGATGC+TGG - chr4_1:25549208-25549227 None:intergenic 30.0%
TGGATATATGGTTTGAAGAA+TGG - chr4_1:25549499-25549518 None:intergenic 30.0%
AGAAGTTATAACAGTAACTG+GGG - chr4_1:25549573-25549592 None:intergenic 30.0%
CAGAAGTTATAACAGTAACT+GGG - chr4_1:25549574-25549593 None:intergenic 30.0%
TCAGAAGTTATAACAGTAAC+TGG - chr4_1:25549575-25549594 None:intergenic 30.0%
TCATCTAACTAAGAGAACAA+AGG + chr4_1:25549607-25549626 Msa0541560:CDS 30.0%
!!! CCCATTTTCTTTATTTTGGT+AGG - chr4_1:25549653-25549672 None:intergenic 30.0%
GACAAAGATCAAATCTGAAT+GGG + chr4_1:25549706-25549725 Msa0541560:CDS 30.0%
CCAATGGTATAGATAAATCA+TGG - chr4_1:25549985-25550004 None:intergenic 30.0%
CCATGATTTATCTATACCAT+TGG + chr4_1:25549982-25550001 Msa0541560:CDS 30.0%
ATCTATACCATTGGATCTTA+AGG + chr4_1:25549991-25550010 Msa0541560:CDS 30.0%
ATTGGATCTTAAGGATTACT+GGG + chr4_1:25550000-25550019 Msa0541560:CDS 30.0%
AACTAGAAATAAACAAAGGG+GGG - chr4_1:25550201-25550220 None:intergenic 30.0%
TTACAGCAATCGCATTTAAA+AGG - chr4_1:25550251-25550270 None:intergenic 30.0%
! TTATGCACATGTGATTTTCT+AGG + chr4_1:25550282-25550301 Msa0541560:three_prime_UTR 30.0%
! GAGAAAAGTTTTCTATGCTA+CGG - chr4_1:25550360-25550379 None:intergenic 30.0%
AGAAAAATAAAGGGATCTCA+GGG - chr4_1:25550384-25550403 None:intergenic 30.0%
TAGAAAAATAAAGGGATCTC+AGG - chr4_1:25550385-25550404 None:intergenic 30.0%
ATGGTAATTGGGAAAATACA+GGG - chr4_1:25546507-25546526 None:intergenic 30.0%
AATGGTAATTGGGAAAATAC+AGG - chr4_1:25546508-25546527 None:intergenic 30.0%
! TTCTCTAAACCTTTGTTTCT+AGG + chr4_1:25546535-25546554 Msa0541560:intron 30.0%
AGAGAATTAAAGGGGAAAAA+AGG - chr4_1:25546668-25546687 None:intergenic 30.0%
TGGAAAGAGAGAGAATTAAA+GGG - chr4_1:25546677-25546696 None:intergenic 30.0%
ATGGAAAGAGAGAGAATTAA+AGG - chr4_1:25546678-25546697 None:intergenic 30.0%
! GTACATTTGGTGAAACAAAA+TGG - chr4_1:25546697-25546716 None:intergenic 30.0%
!! TTTTGTTTCACCAAATGTAC+AGG + chr4_1:25546697-25546716 Msa0541560:intron 30.0%
TTTGTTTCACCAAATGTACA+GGG + chr4_1:25546698-25546717 Msa0541560:intron 30.0%
GCTTTATGTGTAATAGTGTA+TGG + chr4_1:25546839-25546858 Msa0541560:intron 30.0%
AATTACGGTGGATATTTCAT+AGG + chr4_1:25547026-25547045 Msa0541560:intron 30.0%
TTACAATAGACCATTAGCTA+AGG + chr4_1:25547069-25547088 Msa0541560:intron 30.0%
ATATGCAATTGAAAGTCGAT+AGG - chr4_1:25547265-25547284 None:intergenic 30.0%
CAATTTATAAGTTGTGTCTC+TGG + chr4_1:25547399-25547418 Msa0541560:intron 30.0%
GTGTATAGCTACATTAAGTA+AGG - chr4_1:25547457-25547476 None:intergenic 30.0%
TACATCAAATAGAACCACAA+GGG - chr4_1:25547515-25547534 None:intergenic 30.0%
TTACATCAAATAGAACCACA+AGG - chr4_1:25547516-25547535 None:intergenic 30.0%
TGTCCAGCTTATATTTGAAA+AGG + chr4_1:25547806-25547825 Msa0541560:intron 30.0%
GTCCAGCTTATATTTGAAAA+GGG + chr4_1:25547807-25547826 Msa0541560:intron 30.0%
TGTATTTGTGTCAAGTTCTA+GGG - chr4_1:25547912-25547931 None:intergenic 30.0%
TTCTAAATACATCACCTACT+GGG - chr4_1:25547950-25547969 None:intergenic 30.0%
GGTGATGTATTTAGAAGATT+TGG + chr4_1:25547954-25547973 Msa0541560:intron 30.0%
TATAGCCTACAAATGTAGTA+AGG + chr4_1:25548073-25548092 Msa0541560:intron 30.0%
AAAGTCCTTACTACATTTGT+AGG - chr4_1:25548081-25548100 None:intergenic 30.0%
! ACTTCACAAATTGATTCTGT+GGG - chr4_1:25548228-25548247 None:intergenic 30.0%
ACAGAATCAATTTGTGAAGT+GGG + chr4_1:25548228-25548247 Msa0541560:intron 30.0%
AAGTAGAGCTTATAAAGCTT+GGG - chr4_1:25548259-25548278 None:intergenic 30.0%
TAAGTAGAGCTTATAAAGCT+TGG - chr4_1:25548260-25548279 None:intergenic 30.0%
! AAGCTTTATAAGCTCTACTT+AGG + chr4_1:25548259-25548278 Msa0541560:intron 30.0%
ATATATATCTCTAGTCGAAG+TGG + chr4_1:25548284-25548303 Msa0541560:intron 30.0%
TATATATCTCTAGTCGAAGT+GGG + chr4_1:25548285-25548304 Msa0541560:intron 30.0%
! TTTTCCAGACTTCACATATA+TGG - chr4_1:25548341-25548360 None:intergenic 30.0%
CCTAAGCTCAAATTCTAATA+TGG - chr4_1:25548422-25548441 None:intergenic 30.0%
CCATATTAGAATTTGAGCTT+AGG + chr4_1:25548419-25548438 Msa0541560:intron 30.0%
TTTAAGTGTTCCACATTCAT+TGG - chr4_1:25548522-25548541 None:intergenic 30.0%
TGTAGTTTCTGTACACAAAA+AGG - chr4_1:25548575-25548594 None:intergenic 30.0%
GATGCATACAGTCATTAATA+TGG + chr4_1:25548611-25548630 Msa0541560:intron 30.0%
CAGTTCTATACAAGTTTAAC+CGG + chr4_1:25548694-25548713 Msa0541560:intron 30.0%
!!! AATTTTTTGGAAGGAACAAC+AGG - chr4_1:25548842-25548861 None:intergenic 30.0%
!! TGCTTTTCTCATTTGTTAAC+AGG + chr4_1:25548910-25548929 Msa0541560:intron 30.0%
!! ATTGGGTTGATTTATTGGAT+TGG + chr4_1:25549153-25549172 Msa0541560:intron 30.0%
! ATTGGATTTTAAATGTGCAG+TGG + chr4_1:25549171-25549190 Msa0541560:intron 30.0%
! TTGTTCCTTTATTTGATGCT+GGG - chr4_1:25549207-25549226 None:intergenic 30.0%
! TTTGTTCCTTTATTTGATGC+TGG - chr4_1:25549208-25549227 None:intergenic 30.0%
TGGATATATGGTTTGAAGAA+TGG - chr4_1:25549499-25549518 None:intergenic 30.0%
AGAAGTTATAACAGTAACTG+GGG - chr4_1:25549573-25549592 None:intergenic 30.0%
CAGAAGTTATAACAGTAACT+GGG - chr4_1:25549574-25549593 None:intergenic 30.0%
TCAGAAGTTATAACAGTAAC+TGG - chr4_1:25549575-25549594 None:intergenic 30.0%
TCATCTAACTAAGAGAACAA+AGG + chr4_1:25549607-25549626 Msa0541560:CDS 30.0%
!!! CCCATTTTCTTTATTTTGGT+AGG - chr4_1:25549653-25549672 None:intergenic 30.0%
GACAAAGATCAAATCTGAAT+GGG + chr4_1:25549706-25549725 Msa0541560:CDS 30.0%
CCAATGGTATAGATAAATCA+TGG - chr4_1:25549985-25550004 None:intergenic 30.0%
CCATGATTTATCTATACCAT+TGG + chr4_1:25549982-25550001 Msa0541560:CDS 30.0%
ATCTATACCATTGGATCTTA+AGG + chr4_1:25549991-25550010 Msa0541560:CDS 30.0%
ATTGGATCTTAAGGATTACT+GGG + chr4_1:25550000-25550019 Msa0541560:CDS 30.0%
AACTAGAAATAAACAAAGGG+GGG - chr4_1:25550201-25550220 None:intergenic 30.0%
TTACAGCAATCGCATTTAAA+AGG - chr4_1:25550251-25550270 None:intergenic 30.0%
! TTATGCACATGTGATTTTCT+AGG + chr4_1:25550282-25550301 Msa0541560:three_prime_UTR 30.0%
! GAGAAAAGTTTTCTATGCTA+CGG - chr4_1:25550360-25550379 None:intergenic 30.0%
AGAAAAATAAAGGGATCTCA+GGG - chr4_1:25550384-25550403 None:intergenic 30.0%
TAGAAAAATAAAGGGATCTC+AGG - chr4_1:25550385-25550404 None:intergenic 30.0%
AGAACTTACAGCTACAGAAA+CGG - chr4_1:25546414-25546433 None:intergenic 35.0%
GGAAAGAGAGAGAATTAAAG+GGG - chr4_1:25546676-25546695 None:intergenic 35.0%
TTGTTTCACCAAATGTACAG+GGG + chr4_1:25546699-25546718 Msa0541560:intron 35.0%
! GTATGTACTGATGAATGGAA+TGG + chr4_1:25546773-25546792 Msa0541560:intron 35.0%
CTAATTAGTCCGACAAAAGA+TGG - chr4_1:25546997-25547016 None:intergenic 35.0%
TAGTCACTGTTAAATTACGG+TGG + chr4_1:25547014-25547033 Msa0541560:intron 35.0%
CTAGAGACAACATGTTACAT+GGG - chr4_1:25547238-25547257 None:intergenic 35.0%
ACTAGAGACAACATGTTACA+TGG - chr4_1:25547239-25547258 None:intergenic 35.0%
GTCTTGATTGTAGTGTAAAG+AGG + chr4_1:25547421-25547440 Msa0541560:intron 35.0%
! AAATGTTTTTCTTCCCCTTG+TGG + chr4_1:25547498-25547517 Msa0541560:intron 35.0%
ACATCAAATAGAACCACAAG+GGG - chr4_1:25547514-25547533 None:intergenic 35.0%
ATTGCGATCTTCAATCTTCA+AGG + chr4_1:25547545-25547564 Msa0541560:intron 35.0%
AAATATAAGCTGGACACTAG+AGG - chr4_1:25547802-25547821 None:intergenic 35.0%
! CTCCCTTTTCAAATATAAGC+TGG - chr4_1:25547812-25547831 None:intergenic 35.0%
CAGCTTATATTTGAAAAGGG+AGG + chr4_1:25547810-25547829 Msa0541560:intron 35.0%
TTGATTGAATCCAAACACAG+TGG + chr4_1:25547884-25547903 Msa0541560:intron 35.0%
CTGTATTTGTGTCAAGTTCT+AGG - chr4_1:25547913-25547932 None:intergenic 35.0%
AACTTGACACAAATACAGCT+AGG + chr4_1:25547915-25547934 Msa0541560:intron 35.0%
ACTTGACACAAATACAGCTA+GGG + chr4_1:25547916-25547935 Msa0541560:intron 35.0%
CTTCTAAATACATCACCTAC+TGG - chr4_1:25547951-25547970 None:intergenic 35.0%
GAACATGTTGGACATATGAA+AGG - chr4_1:25548172-25548191 None:intergenic 35.0%
AAATTGTGAGAGGAACATGT+TGG - chr4_1:25548184-25548203 None:intergenic 35.0%
! ACATGTTCCTCTCACAATTT+TGG + chr4_1:25548184-25548203 Msa0541560:intron 35.0%
! CTTCACAAATTGATTCTGTG+GGG - chr4_1:25548227-25548246 None:intergenic 35.0%
! CACTTCACAAATTGATTCTG+TGG - chr4_1:25548229-25548248 None:intergenic 35.0%
CACAGAATCAATTTGTGAAG+TGG + chr4_1:25548227-25548246 Msa0541560:intron 35.0%
CAGAATCAATTTGTGAAGTG+GGG + chr4_1:25548229-25548248 Msa0541560:intron 35.0%
TTCCACATTCATTGGAGATA+TGG - chr4_1:25548514-25548533 None:intergenic 35.0%
GCATACAGTCATTAATATGG+TGG + chr4_1:25548614-25548633 Msa0541560:intron 35.0%
TGAATAATTACCCTCCATTC+TGG - chr4_1:25548655-25548674 None:intergenic 35.0%
GAACAGCTTGTATCAAAAGA+AGG - chr4_1:25548758-25548777 None:intergenic 35.0%
TACAAGCTGTTCATTCTGAT+TGG + chr4_1:25548766-25548785 Msa0541560:intron 35.0%
!!! GCAGAGAGAAATTTTTTGGA+AGG - chr4_1:25548851-25548870 None:intergenic 35.0%
GGCATCAAGTCAATAAACAA+GGG - chr4_1:25548883-25548902 None:intergenic 35.0%
TGGCATCAAGTCAATAAACA+AGG - chr4_1:25548884-25548903 None:intergenic 35.0%
AAATGAGAAAAGCAACAGCT+TGG - chr4_1:25548904-25548923 None:intergenic 35.0%
GATGACCACCAATATGAAAA+CGG + chr4_1:25549033-25549052 Msa0541560:CDS 35.0%
! TATGCCTACCGTTTTCATAT+TGG - chr4_1:25549044-25549063 None:intergenic 35.0%
TATGTGCATTCTACTTACCA+GGG - chr4_1:25549094-25549113 None:intergenic 35.0%
ATATGTGCATTCTACTTACC+AGG - chr4_1:25549095-25549114 None:intergenic 35.0%
!! TTAACTTGCAGTTGCACTAT+TGG + chr4_1:25549135-25549154 Msa0541560:intron 35.0%
! TAACTTGCAGTTGCACTATT+GGG + chr4_1:25549136-25549155 Msa0541560:intron 35.0%
!! GCACTATTGGGTTGATTTAT+TGG + chr4_1:25549148-25549167 Msa0541560:intron 35.0%
TTTAAATGTGCAGTGGAATG+TGG + chr4_1:25549178-25549197 Msa0541560:intron 35.0%
! TGTTCCTTTATTTGATGCTG+GGG - chr4_1:25549206-25549225 None:intergenic 35.0%
TCTTCTTGAACTTGAACTAG+AGG + chr4_1:25549283-25549302 Msa0541560:CDS 35.0%
AGTACTATTCCGACTTTGAA+GGG - chr4_1:25549426-25549445 None:intergenic 35.0%
CTTCTGTCATGTTGGATATA+TGG - chr4_1:25549511-25549530 None:intergenic 35.0%
!! CTCGCCCATTTTCTTTATTT+TGG - chr4_1:25549657-25549676 None:intergenic 35.0%
CAAAATAAAGAAAATGGGCG+AGG + chr4_1:25549655-25549674 Msa0541560:CDS 35.0%
AAATGGGCGAGGATTTAAAT+AGG + chr4_1:25549666-25549685 Msa0541560:CDS 35.0%
AATAGGAAGGCTTATTCTGA+AGG + chr4_1:25549683-25549702 Msa0541560:CDS 35.0%
ATAGGAAGGCTTATTCTGAA+GGG + chr4_1:25549684-25549703 Msa0541560:CDS 35.0%
GGACAAAGATCAAATCTGAA+TGG + chr4_1:25549705-25549724 Msa0541560:CDS 35.0%
AGATCAAATCTGAATGGGAT+AGG + chr4_1:25549711-25549730 Msa0541560:CDS 35.0%
! TTTTTAGACGACTTCTCAGT+AGG + chr4_1:25549945-25549964 Msa0541560:CDS 35.0%
CAGTAATCCTTAAGATCCAA+TGG - chr4_1:25550001-25550020 None:intergenic 35.0%
CATTGGATCTTAAGGATTAC+TGG + chr4_1:25549999-25550018 Msa0541560:CDS 35.0%
ACTCGAAACAAATGAATGTC+AGG - chr4_1:25550067-25550086 None:intergenic 35.0%
!! TTTTGATTACAGCTGGTGAT+AGG - chr4_1:25550111-25550130 None:intergenic 35.0%
!! GCAGGTGATTTTTCAATAGA+AGG + chr4_1:25550171-25550190 Msa0541560:three_prime_UTR 35.0%
AGAAAAAGGAAAGAACATGC+AGG - chr4_1:25550324-25550343 None:intergenic 35.0%
AAAAATAAAGGGATCTCAGG+GGG - chr4_1:25550382-25550401 None:intergenic 35.0%
GAAAAATAAAGGGATCTCAG+GGG - chr4_1:25550383-25550402 None:intergenic 35.0%
AGAACTTACAGCTACAGAAA+CGG - chr4_1:25546414-25546433 None:intergenic 35.0%
GGAAAGAGAGAGAATTAAAG+GGG - chr4_1:25546676-25546695 None:intergenic 35.0%
TTGTTTCACCAAATGTACAG+GGG + chr4_1:25546699-25546718 Msa0541560:intron 35.0%
! GTATGTACTGATGAATGGAA+TGG + chr4_1:25546773-25546792 Msa0541560:intron 35.0%
CTAATTAGTCCGACAAAAGA+TGG - chr4_1:25546997-25547016 None:intergenic 35.0%
TAGTCACTGTTAAATTACGG+TGG + chr4_1:25547014-25547033 Msa0541560:intron 35.0%
CTAGAGACAACATGTTACAT+GGG - chr4_1:25547238-25547257 None:intergenic 35.0%
ACTAGAGACAACATGTTACA+TGG - chr4_1:25547239-25547258 None:intergenic 35.0%
GTCTTGATTGTAGTGTAAAG+AGG + chr4_1:25547421-25547440 Msa0541560:intron 35.0%
! AAATGTTTTTCTTCCCCTTG+TGG + chr4_1:25547498-25547517 Msa0541560:intron 35.0%
ACATCAAATAGAACCACAAG+GGG - chr4_1:25547514-25547533 None:intergenic 35.0%
ATTGCGATCTTCAATCTTCA+AGG + chr4_1:25547545-25547564 Msa0541560:intron 35.0%
AAATATAAGCTGGACACTAG+AGG - chr4_1:25547802-25547821 None:intergenic 35.0%
! CTCCCTTTTCAAATATAAGC+TGG - chr4_1:25547812-25547831 None:intergenic 35.0%
CAGCTTATATTTGAAAAGGG+AGG + chr4_1:25547810-25547829 Msa0541560:intron 35.0%
TTGATTGAATCCAAACACAG+TGG + chr4_1:25547884-25547903 Msa0541560:intron 35.0%
CTGTATTTGTGTCAAGTTCT+AGG - chr4_1:25547913-25547932 None:intergenic 35.0%
AACTTGACACAAATACAGCT+AGG + chr4_1:25547915-25547934 Msa0541560:intron 35.0%
ACTTGACACAAATACAGCTA+GGG + chr4_1:25547916-25547935 Msa0541560:intron 35.0%
CTTCTAAATACATCACCTAC+TGG - chr4_1:25547951-25547970 None:intergenic 35.0%
GAACATGTTGGACATATGAA+AGG - chr4_1:25548172-25548191 None:intergenic 35.0%
AAATTGTGAGAGGAACATGT+TGG - chr4_1:25548184-25548203 None:intergenic 35.0%
! ACATGTTCCTCTCACAATTT+TGG + chr4_1:25548184-25548203 Msa0541560:intron 35.0%
! CTTCACAAATTGATTCTGTG+GGG - chr4_1:25548227-25548246 None:intergenic 35.0%
! CACTTCACAAATTGATTCTG+TGG - chr4_1:25548229-25548248 None:intergenic 35.0%
CACAGAATCAATTTGTGAAG+TGG + chr4_1:25548227-25548246 Msa0541560:intron 35.0%
CAGAATCAATTTGTGAAGTG+GGG + chr4_1:25548229-25548248 Msa0541560:intron 35.0%
TTCCACATTCATTGGAGATA+TGG - chr4_1:25548514-25548533 None:intergenic 35.0%
GCATACAGTCATTAATATGG+TGG + chr4_1:25548614-25548633 Msa0541560:intron 35.0%
TGAATAATTACCCTCCATTC+TGG - chr4_1:25548655-25548674 None:intergenic 35.0%
GAACAGCTTGTATCAAAAGA+AGG - chr4_1:25548758-25548777 None:intergenic 35.0%
TACAAGCTGTTCATTCTGAT+TGG + chr4_1:25548766-25548785 Msa0541560:intron 35.0%
!!! GCAGAGAGAAATTTTTTGGA+AGG - chr4_1:25548851-25548870 None:intergenic 35.0%
GGCATCAAGTCAATAAACAA+GGG - chr4_1:25548883-25548902 None:intergenic 35.0%
TGGCATCAAGTCAATAAACA+AGG - chr4_1:25548884-25548903 None:intergenic 35.0%
AAATGAGAAAAGCAACAGCT+TGG - chr4_1:25548904-25548923 None:intergenic 35.0%
GATGACCACCAATATGAAAA+CGG + chr4_1:25549033-25549052 Msa0541560:CDS 35.0%
! TATGCCTACCGTTTTCATAT+TGG - chr4_1:25549044-25549063 None:intergenic 35.0%
TATGTGCATTCTACTTACCA+GGG - chr4_1:25549094-25549113 None:intergenic 35.0%
ATATGTGCATTCTACTTACC+AGG - chr4_1:25549095-25549114 None:intergenic 35.0%
!! TTAACTTGCAGTTGCACTAT+TGG + chr4_1:25549135-25549154 Msa0541560:intron 35.0%
! TAACTTGCAGTTGCACTATT+GGG + chr4_1:25549136-25549155 Msa0541560:intron 35.0%
!! GCACTATTGGGTTGATTTAT+TGG + chr4_1:25549148-25549167 Msa0541560:intron 35.0%
TTTAAATGTGCAGTGGAATG+TGG + chr4_1:25549178-25549197 Msa0541560:intron 35.0%
! TGTTCCTTTATTTGATGCTG+GGG - chr4_1:25549206-25549225 None:intergenic 35.0%
TCTTCTTGAACTTGAACTAG+AGG + chr4_1:25549283-25549302 Msa0541560:CDS 35.0%
AGTACTATTCCGACTTTGAA+GGG - chr4_1:25549426-25549445 None:intergenic 35.0%
CTTCTGTCATGTTGGATATA+TGG - chr4_1:25549511-25549530 None:intergenic 35.0%
!! CTCGCCCATTTTCTTTATTT+TGG - chr4_1:25549657-25549676 None:intergenic 35.0%
CAAAATAAAGAAAATGGGCG+AGG + chr4_1:25549655-25549674 Msa0541560:CDS 35.0%
AAATGGGCGAGGATTTAAAT+AGG + chr4_1:25549666-25549685 Msa0541560:CDS 35.0%
AATAGGAAGGCTTATTCTGA+AGG + chr4_1:25549683-25549702 Msa0541560:CDS 35.0%
ATAGGAAGGCTTATTCTGAA+GGG + chr4_1:25549684-25549703 Msa0541560:CDS 35.0%
GGACAAAGATCAAATCTGAA+TGG + chr4_1:25549705-25549724 Msa0541560:CDS 35.0%
AGATCAAATCTGAATGGGAT+AGG + chr4_1:25549711-25549730 Msa0541560:CDS 35.0%
! TTTTTAGACGACTTCTCAGT+AGG + chr4_1:25549945-25549964 Msa0541560:CDS 35.0%
CAGTAATCCTTAAGATCCAA+TGG - chr4_1:25550001-25550020 None:intergenic 35.0%
CATTGGATCTTAAGGATTAC+TGG + chr4_1:25549999-25550018 Msa0541560:CDS 35.0%
ACTCGAAACAAATGAATGTC+AGG - chr4_1:25550067-25550086 None:intergenic 35.0%
!! TTTTGATTACAGCTGGTGAT+AGG - chr4_1:25550111-25550130 None:intergenic 35.0%
!! GCAGGTGATTTTTCAATAGA+AGG + chr4_1:25550171-25550190 Msa0541560:three_prime_UTR 35.0%
AGAAAAAGGAAAGAACATGC+AGG - chr4_1:25550324-25550343 None:intergenic 35.0%
AAAAATAAAGGGATCTCAGG+GGG - chr4_1:25550382-25550401 None:intergenic 35.0%
GAAAAATAAAGGGATCTCAG+GGG - chr4_1:25550383-25550402 None:intergenic 35.0%
AACCCATGACCACTTACTTA+GGG - chr4_1:25546947-25546966 None:intergenic 40.0%
! GAGGAGAATCCATCTTTTGT+CGG + chr4_1:25546985-25547004 Msa0541560:intron 40.0%
ATTGGAAAAGAAGCAGAGAG+TGG - chr4_1:25547129-25547148 None:intergenic 40.0%
GACGTATTGCTTATGTGTGA+TGG + chr4_1:25547326-25547345 Msa0541560:intron 40.0%
!! ATTGCTTATGTGTGATGGAC+AGG + chr4_1:25547331-25547350 Msa0541560:intron 40.0%
!! TTGCTTATGTGTGATGGACA+GGG + chr4_1:25547332-25547351 Msa0541560:intron 40.0%
TTTAAGGAAAGGGAAACGTG+CGG - chr4_1:25547582-25547601 None:intergenic 40.0%
AGTTTGTGGTCAAGAAAGAG+GGG - chr4_1:25548036-25548055 None:intergenic 40.0%
CAGTTTGTGGTCAAGAAAGA+GGG - chr4_1:25548037-25548056 None:intergenic 40.0%
ACAGTTTGTGGTCAAGAAAG+AGG - chr4_1:25548038-25548057 None:intergenic 40.0%
CATATATATGGACAAACCCC+TGG - chr4_1:25548121-25548140 None:intergenic 40.0%
GTGGGGTTGAAATAAGTCTT+GGG - chr4_1:25548210-25548229 None:intergenic 40.0%
TGTGGGGTTGAAATAAGTCT+TGG - chr4_1:25548211-25548230 None:intergenic 40.0%
ACTTCACATATATGGTCCTG+CGG - chr4_1:25548333-25548352 None:intergenic 40.0%
AGGACCATATATGTGAAGTC+TGG + chr4_1:25548334-25548353 Msa0541560:intron 40.0%
GAGTGGAATAACAGAGATTG+TGG + chr4_1:25548365-25548384 Msa0541560:intron 40.0%
TCTATCTCAGACCTGTTGTT+TGG - chr4_1:25548391-25548410 None:intergenic 40.0%
AAGCCATATACGCACTACTT+AGG + chr4_1:25548488-25548507 Msa0541560:intron 40.0%
CAGTCATTAATATGGTGGCA+AGG + chr4_1:25548619-25548638 Msa0541560:intron 40.0%
! ATATGGTGGCAAGGTTTGTT+TGG + chr4_1:25548628-25548647 Msa0541560:intron 40.0%
! TATGGTGGCAAGGTTTGTTT+GGG + chr4_1:25548629-25548648 Msa0541560:intron 40.0%
GGAGGGTAATTATTCAAGCT+TGG + chr4_1:25548659-25548678 Msa0541560:intron 40.0%
!!! GGCAGCAGAGAGAAATTTTT+TGG - chr4_1:25548855-25548874 None:intergenic 40.0%
AGTCAATAAACAAGGGAGAG+AGG - chr4_1:25548876-25548895 None:intergenic 40.0%
! ATTGGTCTCAAGAAGTCTTG+AGG - chr4_1:25548972-25548991 None:intergenic 40.0%
TTGCAACAGATGCGGTAAAT+TGG - chr4_1:25548990-25549009 None:intergenic 40.0%
! AGAGGATTTTGCAACAGATG+CGG - chr4_1:25548998-25549017 None:intergenic 40.0%
AAAATCCTCTGGATGCAAGA+TGG + chr4_1:25549008-25549027 Msa0541560:exon 40.0%
ACCACCAATATGAAAACGGT+AGG + chr4_1:25549037-25549056 Msa0541560:CDS 40.0%
TGAAAACGGTAGGCATAAGA+TGG + chr4_1:25549047-25549066 Msa0541560:CDS 40.0%
!! CATAAGATGGACTACTACAG+AGG + chr4_1:25549060-25549079 Msa0541560:CDS 40.0%
TTAGGTCCATTATGGCTGAA+AGG + chr4_1:25549252-25549271 Msa0541560:CDS 40.0%
ATCTGAAAAGAATGAAGCCC+TGG + chr4_1:25549313-25549332 Msa0541560:CDS 40.0%
TCAGAAGGATAATGCTCTAC+TGG + chr4_1:25549379-25549398 Msa0541560:CDS 40.0%
AGGATAATGCTCTACTGGAA+CGG + chr4_1:25549384-25549403 Msa0541560:CDS 40.0%
CAGTACTATTCCGACTTTGA+AGG - chr4_1:25549427-25549446 None:intergenic 40.0%
CTTCAAAGTCGGAATAGTAC+TGG + chr4_1:25549425-25549444 Msa0541560:CDS 40.0%
ACTGGCAACTTTCCATTCAA+TGG + chr4_1:25549443-25549462 Msa0541560:CDS 40.0%
CGTTGAATTCCACCATTGAA+TGG - chr4_1:25549458-25549477 None:intergenic 40.0%
! TTCAATGGTGGAATTCAACG+TGG + chr4_1:25549458-25549477 Msa0541560:CDS 40.0%
! ATATGCTGCTTCTGTCATGT+TGG - chr4_1:25549519-25549538 None:intergenic 40.0%
AGTTATAACAGTAACTGGGG+AGG - chr4_1:25549570-25549589 None:intergenic 40.0%
! TGGATGCATTGACAATGTAG+TGG - chr4_1:25549864-25549883 None:intergenic 40.0%
! GTAACGATTTGTTCCATGTC+TGG - chr4_1:25550026-25550045 None:intergenic 40.0%
CTGTAATCAAAACCATGCCT+TGG + chr4_1:25550119-25550138 Msa0541560:three_prime_UTR 40.0%
! TGCACATGTGATTTTCTAGG+TGG + chr4_1:25550285-25550304 Msa0541560:three_prime_UTR 40.0%
AACCCATGACCACTTACTTA+GGG - chr4_1:25546947-25546966 None:intergenic 40.0%
! GAGGAGAATCCATCTTTTGT+CGG + chr4_1:25546985-25547004 Msa0541560:intron 40.0%
ATTGGAAAAGAAGCAGAGAG+TGG - chr4_1:25547129-25547148 None:intergenic 40.0%
GACGTATTGCTTATGTGTGA+TGG + chr4_1:25547326-25547345 Msa0541560:intron 40.0%
!! ATTGCTTATGTGTGATGGAC+AGG + chr4_1:25547331-25547350 Msa0541560:intron 40.0%
!! TTGCTTATGTGTGATGGACA+GGG + chr4_1:25547332-25547351 Msa0541560:intron 40.0%
TTTAAGGAAAGGGAAACGTG+CGG - chr4_1:25547582-25547601 None:intergenic 40.0%
AGTTTGTGGTCAAGAAAGAG+GGG - chr4_1:25548036-25548055 None:intergenic 40.0%
CAGTTTGTGGTCAAGAAAGA+GGG - chr4_1:25548037-25548056 None:intergenic 40.0%
ACAGTTTGTGGTCAAGAAAG+AGG - chr4_1:25548038-25548057 None:intergenic 40.0%
CATATATATGGACAAACCCC+TGG - chr4_1:25548121-25548140 None:intergenic 40.0%
GTGGGGTTGAAATAAGTCTT+GGG - chr4_1:25548210-25548229 None:intergenic 40.0%
TGTGGGGTTGAAATAAGTCT+TGG - chr4_1:25548211-25548230 None:intergenic 40.0%
ACTTCACATATATGGTCCTG+CGG - chr4_1:25548333-25548352 None:intergenic 40.0%
AGGACCATATATGTGAAGTC+TGG + chr4_1:25548334-25548353 Msa0541560:intron 40.0%
GAGTGGAATAACAGAGATTG+TGG + chr4_1:25548365-25548384 Msa0541560:intron 40.0%
TCTATCTCAGACCTGTTGTT+TGG - chr4_1:25548391-25548410 None:intergenic 40.0%
AAGCCATATACGCACTACTT+AGG + chr4_1:25548488-25548507 Msa0541560:intron 40.0%
CAGTCATTAATATGGTGGCA+AGG + chr4_1:25548619-25548638 Msa0541560:intron 40.0%
! ATATGGTGGCAAGGTTTGTT+TGG + chr4_1:25548628-25548647 Msa0541560:intron 40.0%
! TATGGTGGCAAGGTTTGTTT+GGG + chr4_1:25548629-25548648 Msa0541560:intron 40.0%
GGAGGGTAATTATTCAAGCT+TGG + chr4_1:25548659-25548678 Msa0541560:intron 40.0%
!!! GGCAGCAGAGAGAAATTTTT+TGG - chr4_1:25548855-25548874 None:intergenic 40.0%
AGTCAATAAACAAGGGAGAG+AGG - chr4_1:25548876-25548895 None:intergenic 40.0%
! ATTGGTCTCAAGAAGTCTTG+AGG - chr4_1:25548972-25548991 None:intergenic 40.0%
TTGCAACAGATGCGGTAAAT+TGG - chr4_1:25548990-25549009 None:intergenic 40.0%
! AGAGGATTTTGCAACAGATG+CGG - chr4_1:25548998-25549017 None:intergenic 40.0%
AAAATCCTCTGGATGCAAGA+TGG + chr4_1:25549008-25549027 Msa0541560:exon 40.0%
ACCACCAATATGAAAACGGT+AGG + chr4_1:25549037-25549056 Msa0541560:CDS 40.0%
TGAAAACGGTAGGCATAAGA+TGG + chr4_1:25549047-25549066 Msa0541560:CDS 40.0%
!! CATAAGATGGACTACTACAG+AGG + chr4_1:25549060-25549079 Msa0541560:CDS 40.0%
TTAGGTCCATTATGGCTGAA+AGG + chr4_1:25549252-25549271 Msa0541560:CDS 40.0%
ATCTGAAAAGAATGAAGCCC+TGG + chr4_1:25549313-25549332 Msa0541560:CDS 40.0%
TCAGAAGGATAATGCTCTAC+TGG + chr4_1:25549379-25549398 Msa0541560:CDS 40.0%
AGGATAATGCTCTACTGGAA+CGG + chr4_1:25549384-25549403 Msa0541560:CDS 40.0%
CAGTACTATTCCGACTTTGA+AGG - chr4_1:25549427-25549446 None:intergenic 40.0%
CTTCAAAGTCGGAATAGTAC+TGG + chr4_1:25549425-25549444 Msa0541560:CDS 40.0%
ACTGGCAACTTTCCATTCAA+TGG + chr4_1:25549443-25549462 Msa0541560:CDS 40.0%
CGTTGAATTCCACCATTGAA+TGG - chr4_1:25549458-25549477 None:intergenic 40.0%
! TTCAATGGTGGAATTCAACG+TGG + chr4_1:25549458-25549477 Msa0541560:CDS 40.0%
! ATATGCTGCTTCTGTCATGT+TGG - chr4_1:25549519-25549538 None:intergenic 40.0%
AGTTATAACAGTAACTGGGG+AGG - chr4_1:25549570-25549589 None:intergenic 40.0%
! TGGATGCATTGACAATGTAG+TGG - chr4_1:25549864-25549883 None:intergenic 40.0%
! GTAACGATTTGTTCCATGTC+TGG - chr4_1:25550026-25550045 None:intergenic 40.0%
CTGTAATCAAAACCATGCCT+TGG + chr4_1:25550119-25550138 Msa0541560:three_prime_UTR 40.0%
! TGCACATGTGATTTTCTAGG+TGG + chr4_1:25550285-25550304 Msa0541560:three_prime_UTR 40.0%
AGAACATGCCCCTGTACATT+TGG - chr4_1:25546710-25546729 None:intergenic 45.0%
CACCCTAAGTAAGTGGTCAT+GGG + chr4_1:25546942-25546961 Msa0541560:intron 45.0%
GAACCCATGACCACTTACTT+AGG - chr4_1:25546948-25546967 None:intergenic 45.0%
CACGGTGAAACCTTAGCTAA+TGG - chr4_1:25547082-25547101 None:intergenic 45.0%
!! TTCTAGGGTACCACTGTGTT+TGG - chr4_1:25547897-25547916 None:intergenic 45.0%
GTCAGACTGCATACAGTTTG+TGG - chr4_1:25548050-25548069 None:intergenic 45.0%
!! TCTCTAGAGTGTCAAGTACC+AGG + chr4_1:25548100-25548119 Msa0541560:intron 45.0%
!! CTCTAGAGTGTCAAGTACCA+GGG + chr4_1:25548101-25548120 Msa0541560:intron 45.0%
! TCTAGAGTGTCAAGTACCAG+GGG + chr4_1:25548102-25548121 Msa0541560:intron 45.0%
TCTTGGGCCAAAATTGTGAG+AGG - chr4_1:25548194-25548213 None:intergenic 45.0%
CTTCACATATATGGTCCTGC+GGG - chr4_1:25548332-25548351 None:intergenic 45.0%
GAAGTCTGGAAAAATGCGAG+TGG + chr4_1:25548348-25548367 Msa0541560:intron 45.0%
AGAGATTGTGGCCAAACAAC+AGG + chr4_1:25548377-25548396 Msa0541560:intron 45.0%
TGGCCTAAGTAGTGCGTATA+TGG - chr4_1:25548494-25548513 None:intergenic 45.0%
GGCCATATCTCCAATGAATG+TGG + chr4_1:25548509-25548528 Msa0541560:intron 45.0%
! AAGGTTTGTTTGGGCCAGAA+TGG + chr4_1:25548638-25548657 Msa0541560:intron 45.0%
TTTGTTTGGGCCAGAATGGA+GGG + chr4_1:25548642-25548661 Msa0541560:intron 45.0%
GCATCTGTTGCAAAATCCTC+TGG + chr4_1:25548997-25549016 Msa0541560:five_prime_UTR 45.0%
! GCCTACCGTTTTCATATTGG+TGG - chr4_1:25549041-25549060 None:intergenic 45.0%
GGATCCCCAGCATCAAATAA+AGG + chr4_1:25549199-25549218 Msa0541560:CDS 45.0%
GGATAATGCTCTACTGGAAC+GGG + chr4_1:25549385-25549404 Msa0541560:CDS 45.0%
GGCAACTTTCCATTCAATGG+TGG + chr4_1:25549446-25549465 Msa0541560:CDS 45.0%
GAATTCAACGTGGATCCAAG+CGG + chr4_1:25549468-25549487 Msa0541560:CDS 45.0%
AGAAGCAGCATATAGCACGA+CGG + chr4_1:25549526-25549545 Msa0541560:CDS 45.0%
GGGCGAGGATTTAAATAGGA+AGG + chr4_1:25549670-25549689 Msa0541560:CDS 45.0%
CAAATCTGAATGGGATAGGC+AGG + chr4_1:25549715-25549734 Msa0541560:CDS 45.0%
TACCACGACAGTGCTACAAA+TGG + chr4_1:25549807-25549826 Msa0541560:CDS 45.0%
ACCACGACAGTGCTACAAAT+GGG + chr4_1:25549808-25549827 Msa0541560:CDS 45.0%
CTCAGTAGGTTTGCATCAGA+AGG + chr4_1:25549959-25549978 Msa0541560:CDS 45.0%
TGGTGATAGGCGGTCTAAAA+AGG - chr4_1:25550098-25550117 None:intergenic 45.0%
TGATTACAGCTGGTGATAGG+CGG - chr4_1:25550108-25550127 None:intergenic 45.0%
!!! GGCATGGTTTTGATTACAGC+TGG - chr4_1:25550118-25550137 None:intergenic 45.0%
ATATCTTGCTGACCAAGGCA+TGG - chr4_1:25550134-25550153 None:intergenic 45.0%
CAAGCATATCTTGCTGACCA+AGG - chr4_1:25550139-25550158 None:intergenic 45.0%
AGAACATGCCCCTGTACATT+TGG - chr4_1:25546710-25546729 None:intergenic 45.0%
CACCCTAAGTAAGTGGTCAT+GGG + chr4_1:25546942-25546961 Msa0541560:intron 45.0%
GAACCCATGACCACTTACTT+AGG - chr4_1:25546948-25546967 None:intergenic 45.0%
CACGGTGAAACCTTAGCTAA+TGG - chr4_1:25547082-25547101 None:intergenic 45.0%
!! TTCTAGGGTACCACTGTGTT+TGG - chr4_1:25547897-25547916 None:intergenic 45.0%
GTCAGACTGCATACAGTTTG+TGG - chr4_1:25548050-25548069 None:intergenic 45.0%
!! TCTCTAGAGTGTCAAGTACC+AGG + chr4_1:25548100-25548119 Msa0541560:intron 45.0%
!! CTCTAGAGTGTCAAGTACCA+GGG + chr4_1:25548101-25548120 Msa0541560:intron 45.0%
! TCTAGAGTGTCAAGTACCAG+GGG + chr4_1:25548102-25548121 Msa0541560:intron 45.0%
TCTTGGGCCAAAATTGTGAG+AGG - chr4_1:25548194-25548213 None:intergenic 45.0%
CTTCACATATATGGTCCTGC+GGG - chr4_1:25548332-25548351 None:intergenic 45.0%
GAAGTCTGGAAAAATGCGAG+TGG + chr4_1:25548348-25548367 Msa0541560:intron 45.0%
AGAGATTGTGGCCAAACAAC+AGG + chr4_1:25548377-25548396 Msa0541560:intron 45.0%
TGGCCTAAGTAGTGCGTATA+TGG - chr4_1:25548494-25548513 None:intergenic 45.0%
GGCCATATCTCCAATGAATG+TGG + chr4_1:25548509-25548528 Msa0541560:intron 45.0%
! AAGGTTTGTTTGGGCCAGAA+TGG + chr4_1:25548638-25548657 Msa0541560:intron 45.0%
TTTGTTTGGGCCAGAATGGA+GGG + chr4_1:25548642-25548661 Msa0541560:intron 45.0%
GCATCTGTTGCAAAATCCTC+TGG + chr4_1:25548997-25549016 Msa0541560:five_prime_UTR 45.0%
! GCCTACCGTTTTCATATTGG+TGG - chr4_1:25549041-25549060 None:intergenic 45.0%
GGATCCCCAGCATCAAATAA+AGG + chr4_1:25549199-25549218 Msa0541560:CDS 45.0%
GGATAATGCTCTACTGGAAC+GGG + chr4_1:25549385-25549404 Msa0541560:CDS 45.0%
GGCAACTTTCCATTCAATGG+TGG + chr4_1:25549446-25549465 Msa0541560:CDS 45.0%
GAATTCAACGTGGATCCAAG+CGG + chr4_1:25549468-25549487 Msa0541560:CDS 45.0%
AGAAGCAGCATATAGCACGA+CGG + chr4_1:25549526-25549545 Msa0541560:CDS 45.0%
GGGCGAGGATTTAAATAGGA+AGG + chr4_1:25549670-25549689 Msa0541560:CDS 45.0%
CAAATCTGAATGGGATAGGC+AGG + chr4_1:25549715-25549734 Msa0541560:CDS 45.0%
TACCACGACAGTGCTACAAA+TGG + chr4_1:25549807-25549826 Msa0541560:CDS 45.0%
ACCACGACAGTGCTACAAAT+GGG + chr4_1:25549808-25549827 Msa0541560:CDS 45.0%
CTCAGTAGGTTTGCATCAGA+AGG + chr4_1:25549959-25549978 Msa0541560:CDS 45.0%
TGGTGATAGGCGGTCTAAAA+AGG - chr4_1:25550098-25550117 None:intergenic 45.0%
TGATTACAGCTGGTGATAGG+CGG - chr4_1:25550108-25550127 None:intergenic 45.0%
!!! GGCATGGTTTTGATTACAGC+TGG - chr4_1:25550118-25550137 None:intergenic 45.0%
ATATCTTGCTGACCAAGGCA+TGG - chr4_1:25550134-25550153 None:intergenic 45.0%
CAAGCATATCTTGCTGACCA+AGG - chr4_1:25550139-25550158 None:intergenic 45.0%
!! AAAAAAAAAAAAACTATTTA+AGG - chr4_1:25547598-25547617 None:intergenic 5.0%
!! AAAAAAAAAAAAACTATTTA+AGG - chr4_1:25547598-25547617 None:intergenic 5.0%
AAACATGACACGGGTGAGGA+AGG + chr4_1:25546330-25546349 Msa0541560:five_prime_UTR 50.0%
TCTCTCTCTCTCTCTCTCTC+TGG + chr4_1:25546373-25546392 Msa0541560:five_prime_UTR 50.0%
! CACTTACTTAGGGTGCTCGA+GGG - chr4_1:25546937-25546956 None:intergenic 50.0%
GCACCCTAAGTAAGTGGTCA+TGG + chr4_1:25546941-25546960 Msa0541560:intron 50.0%
ATTCTCCTCTCCAGACAGTC+GGG - chr4_1:25546974-25546993 None:intergenic 50.0%
GATTCTCCTCTCCAGACAGT+CGG - chr4_1:25546975-25546994 None:intergenic 50.0%
CTAGGGATGTCATACCCAGT+AGG + chr4_1:25547933-25547952 Msa0541560:intron 50.0%
ACATATATGGTCCTGCGGGT+GGG - chr4_1:25548328-25548347 None:intergenic 50.0%
GTTTGTTTGGGCCAGAATGG+AGG + chr4_1:25548641-25548660 Msa0541560:intron 50.0%
ATCGTCCATCTTGCATCCAG+AGG - chr4_1:25549016-25549035 None:intergenic 50.0%
GTCCATTATGGCTGAAAGGC+AGG + chr4_1:25549256-25549275 Msa0541560:CDS 50.0%
TGCCTGCCTTTCAGCCATAA+TGG - chr4_1:25549261-25549280 None:intergenic 50.0%
! GGATGAAGCACTTGCTCAGA+AGG + chr4_1:25549364-25549383 Msa0541560:CDS 50.0%
CTCTTGCAGCCCTTCAAAGT+CGG + chr4_1:25549414-25549433 Msa0541560:CDS 50.0%
TGAAGAATGGTGCATCCGCT+TGG - chr4_1:25549486-25549505 None:intergenic 50.0%
GAATGGGATAGGCAGGATGT+TGG + chr4_1:25549722-25549741 Msa0541560:CDS 50.0%
CTCCAGTACACGTGCAAACT+GGG - chr4_1:25549787-25549806 None:intergenic 50.0%
ACTCCAGTACACGTGCAAAC+TGG - chr4_1:25549788-25549807 None:intergenic 50.0%
CCACGACAGTGCTACAAATG+GGG + chr4_1:25549809-25549828 Msa0541560:CDS 50.0%
CACGACAGTGCTACAAATGG+GGG + chr4_1:25549810-25549829 Msa0541560:CDS 50.0%
CAGTGCTACAAATGGGGGAA+TGG + chr4_1:25549815-25549834 Msa0541560:CDS 50.0%
TGCTACAAATGGGGGAATGG+TGG + chr4_1:25549818-25549837 Msa0541560:CDS 50.0%
! ACAAATGGGGGAATGGTGGA+TGG + chr4_1:25549822-25549841 Msa0541560:CDS 50.0%
TTGTTCGGAAGCTGTGGTAG+TGG - chr4_1:25549884-25549903 None:intergenic 50.0%
ATTGGAGGGCGGAAAATGAG+CGG + chr4_1:25549917-25549936 Msa0541560:CDS 50.0%
AAGGATTACTGGGCCAGACA+TGG + chr4_1:25550010-25550029 Msa0541560:CDS 50.0%
TGCTTGAGTTTAGCGCATGC+AGG + chr4_1:25550153-25550172 Msa0541560:three_prime_UTR 50.0%
AAACATGACACGGGTGAGGA+AGG + chr4_1:25546330-25546349 Msa0541560:five_prime_UTR 50.0%
TCTCTCTCTCTCTCTCTCTC+TGG + chr4_1:25546373-25546392 Msa0541560:five_prime_UTR 50.0%
! CACTTACTTAGGGTGCTCGA+GGG - chr4_1:25546937-25546956 None:intergenic 50.0%
GCACCCTAAGTAAGTGGTCA+TGG + chr4_1:25546941-25546960 Msa0541560:intron 50.0%
ATTCTCCTCTCCAGACAGTC+GGG - chr4_1:25546974-25546993 None:intergenic 50.0%
GATTCTCCTCTCCAGACAGT+CGG - chr4_1:25546975-25546994 None:intergenic 50.0%
CTAGGGATGTCATACCCAGT+AGG + chr4_1:25547933-25547952 Msa0541560:intron 50.0%
ACATATATGGTCCTGCGGGT+GGG - chr4_1:25548328-25548347 None:intergenic 50.0%
GTTTGTTTGGGCCAGAATGG+AGG + chr4_1:25548641-25548660 Msa0541560:intron 50.0%
ATCGTCCATCTTGCATCCAG+AGG - chr4_1:25549016-25549035 None:intergenic 50.0%
GTCCATTATGGCTGAAAGGC+AGG + chr4_1:25549256-25549275 Msa0541560:CDS 50.0%
TGCCTGCCTTTCAGCCATAA+TGG - chr4_1:25549261-25549280 None:intergenic 50.0%
! GGATGAAGCACTTGCTCAGA+AGG + chr4_1:25549364-25549383 Msa0541560:CDS 50.0%
CTCTTGCAGCCCTTCAAAGT+CGG + chr4_1:25549414-25549433 Msa0541560:CDS 50.0%
TGAAGAATGGTGCATCCGCT+TGG - chr4_1:25549486-25549505 None:intergenic 50.0%
GAATGGGATAGGCAGGATGT+TGG + chr4_1:25549722-25549741 Msa0541560:CDS 50.0%
CTCCAGTACACGTGCAAACT+GGG - chr4_1:25549787-25549806 None:intergenic 50.0%
ACTCCAGTACACGTGCAAAC+TGG - chr4_1:25549788-25549807 None:intergenic 50.0%
CCACGACAGTGCTACAAATG+GGG + chr4_1:25549809-25549828 Msa0541560:CDS 50.0%
CACGACAGTGCTACAAATGG+GGG + chr4_1:25549810-25549829 Msa0541560:CDS 50.0%
CAGTGCTACAAATGGGGGAA+TGG + chr4_1:25549815-25549834 Msa0541560:CDS 50.0%
TGCTACAAATGGGGGAATGG+TGG + chr4_1:25549818-25549837 Msa0541560:CDS 50.0%
! ACAAATGGGGGAATGGTGGA+TGG + chr4_1:25549822-25549841 Msa0541560:CDS 50.0%
TTGTTCGGAAGCTGTGGTAG+TGG - chr4_1:25549884-25549903 None:intergenic 50.0%
ATTGGAGGGCGGAAAATGAG+CGG + chr4_1:25549917-25549936 Msa0541560:CDS 50.0%
AAGGATTACTGGGCCAGACA+TGG + chr4_1:25550010-25550029 Msa0541560:CDS 50.0%
TGCTTGAGTTTAGCGCATGC+AGG + chr4_1:25550153-25550172 Msa0541560:three_prime_UTR 50.0%
ATGACACGGGTGAGGAAGGA+AGG + chr4_1:25546334-25546353 Msa0541560:five_prime_UTR 55.0%
CGAGGGCGGTACCAAATAAG+AGG - chr4_1:25546920-25546939 None:intergenic 55.0%
! TTACTTAGGGTGCTCGAGGG+CGG - chr4_1:25546934-25546953 None:intergenic 55.0%
! CCACTTACTTAGGGTGCTCG+AGG - chr4_1:25546938-25546957 None:intergenic 55.0%
CCTCGAGCACCCTAAGTAAG+TGG + chr4_1:25546935-25546954 Msa0541560:intron 55.0%
TGGGTTCAATCCCGACTGTC+TGG + chr4_1:25546961-25546980 Msa0541560:intron 55.0%
TCAATCCCGACTGTCTGGAG+AGG + chr4_1:25546966-25546985 Msa0541560:intron 55.0%
ATATATGGTCCTGCGGGTGG+GGG - chr4_1:25548326-25548345 None:intergenic 55.0%
CATATATGGTCCTGCGGGTG+GGG - chr4_1:25548327-25548346 None:intergenic 55.0%
CACATATATGGTCCTGCGGG+TGG - chr4_1:25548329-25548348 None:intergenic 55.0%
! CTACAGAGGAGCACATTCCC+TGG + chr4_1:25549074-25549093 Msa0541560:CDS 55.0%
TGCTTCATCCCTCTGCCGAA+GGG - chr4_1:25549354-25549373 None:intergenic 55.0%
GTACACGTGCAAACTGGGAC+AGG - chr4_1:25549782-25549801 None:intergenic 55.0%
GTCCCAGTTTGCACGTGTAC+TGG + chr4_1:25549782-25549801 Msa0541560:CDS 55.0%
CCCCATTTGTAGCACTGTCG+TGG - chr4_1:25549812-25549831 None:intergenic 55.0%
ATGCGAGCATGGCGCTTGTT+CGG - chr4_1:25549899-25549918 None:intergenic 55.0%
AACAAGCGCCATGCTCGCAT+TGG + chr4_1:25549899-25549918 Msa0541560:CDS 55.0%
ATGACACGGGTGAGGAAGGA+AGG + chr4_1:25546334-25546353 Msa0541560:five_prime_UTR 55.0%
CGAGGGCGGTACCAAATAAG+AGG - chr4_1:25546920-25546939 None:intergenic 55.0%
! TTACTTAGGGTGCTCGAGGG+CGG - chr4_1:25546934-25546953 None:intergenic 55.0%
! CCACTTACTTAGGGTGCTCG+AGG - chr4_1:25546938-25546957 None:intergenic 55.0%
CCTCGAGCACCCTAAGTAAG+TGG + chr4_1:25546935-25546954 Msa0541560:intron 55.0%
TGGGTTCAATCCCGACTGTC+TGG + chr4_1:25546961-25546980 Msa0541560:intron 55.0%
TCAATCCCGACTGTCTGGAG+AGG + chr4_1:25546966-25546985 Msa0541560:intron 55.0%
ATATATGGTCCTGCGGGTGG+GGG - chr4_1:25548326-25548345 None:intergenic 55.0%
CATATATGGTCCTGCGGGTG+GGG - chr4_1:25548327-25548346 None:intergenic 55.0%
CACATATATGGTCCTGCGGG+TGG - chr4_1:25548329-25548348 None:intergenic 55.0%
! CTACAGAGGAGCACATTCCC+TGG + chr4_1:25549074-25549093 Msa0541560:CDS 55.0%
TGCTTCATCCCTCTGCCGAA+GGG - chr4_1:25549354-25549373 None:intergenic 55.0%
GTACACGTGCAAACTGGGAC+AGG - chr4_1:25549782-25549801 None:intergenic 55.0%
GTCCCAGTTTGCACGTGTAC+TGG + chr4_1:25549782-25549801 Msa0541560:CDS 55.0%
CCCCATTTGTAGCACTGTCG+TGG - chr4_1:25549812-25549831 None:intergenic 55.0%
ATGCGAGCATGGCGCTTGTT+CGG - chr4_1:25549899-25549918 None:intergenic 55.0%
AACAAGCGCCATGCTCGCAT+TGG + chr4_1:25549899-25549918 Msa0541560:CDS 55.0%
TATATGGTCCTGCGGGTGGG+GGG - chr4_1:25548325-25548344 None:intergenic 60.0%
CTGCTCGAGACGTAGCCCTT+CGG + chr4_1:25549336-25549355 Msa0541560:CDS 60.0%
AGACGTAGCCCTTCGGCAGA+GGG + chr4_1:25549343-25549362 Msa0541560:CDS 60.0%
GTGCTTCATCCCTCTGCCGA+AGG - chr4_1:25549355-25549374 None:intergenic 60.0%
TGGCGCTTGTTCGGAAGCTG+TGG - chr4_1:25549890-25549909 None:intergenic 60.0%
AAGCGCCATGCTCGCATTGG+AGG + chr4_1:25549902-25549921 Msa0541560:CDS 60.0%
AGCGCCATGCTCGCATTGGA+GGG + chr4_1:25549903-25549922 Msa0541560:CDS 60.0%
TATATGGTCCTGCGGGTGGG+GGG - chr4_1:25548325-25548344 None:intergenic 60.0%
CTGCTCGAGACGTAGCCCTT+CGG + chr4_1:25549336-25549355 Msa0541560:CDS 60.0%
AGACGTAGCCCTTCGGCAGA+GGG + chr4_1:25549343-25549362 Msa0541560:CDS 60.0%
GTGCTTCATCCCTCTGCCGA+AGG - chr4_1:25549355-25549374 None:intergenic 60.0%
TGGCGCTTGTTCGGAAGCTG+TGG - chr4_1:25549890-25549909 None:intergenic 60.0%
AAGCGCCATGCTCGCATTGG+AGG + chr4_1:25549902-25549921 Msa0541560:CDS 60.0%
AGCGCCATGCTCGCATTGGA+GGG + chr4_1:25549903-25549922 Msa0541560:CDS 60.0%
GGCTACGTCTCGAGCAGCCA+GGG - chr4_1:25549333-25549352 None:intergenic 65.0%
GAGACGTAGCCCTTCGGCAG+AGG + chr4_1:25549342-25549361 Msa0541560:CDS 65.0%
GCCATGCTCGCATTGGAGGG+CGG + chr4_1:25549906-25549925 Msa0541560:CDS 65.0%
TCCGCCCTCCAATGCGAGCA+TGG - chr4_1:25549910-25549929 None:intergenic 65.0%
GGCTACGTCTCGAGCAGCCA+GGG - chr4_1:25549333-25549352 None:intergenic 65.0%
GAGACGTAGCCCTTCGGCAG+AGG + chr4_1:25549342-25549361 Msa0541560:CDS 65.0%
GCCATGCTCGCATTGGAGGG+CGG + chr4_1:25549906-25549925 Msa0541560:CDS 65.0%
TCCGCCCTCCAATGCGAGCA+TGG - chr4_1:25549910-25549929 None:intergenic 65.0%
AACACAAGCCCCCCACCCGC+AGG + chr4_1:25548314-25548333 Msa0541560:intron 70.0%
GGGCTACGTCTCGAGCAGCC+AGG - chr4_1:25549334-25549353 None:intergenic 70.0%
AACACAAGCCCCCCACCCGC+AGG + chr4_1:25548314-25548333 Msa0541560:intron 70.0%
GGGCTACGTCTCGAGCAGCC+AGG - chr4_1:25549334-25549353 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 25546327 25550433 25546327 ID=Msa0541560;Name=Msa0541560
chr4_1 mRNA 25546327 25550433 25546327 ID=Msa0541560-mRNA-1;Parent=Msa0541560;Name=Msa0541560-mRNA-1;_AED=0.16;_eAED=0.16;_QI=193|1|1|1|0.5|0.33|3|373|312
chr4_1 exon 25546327 25546424 25546327 ID=Msa0541560-mRNA-1:exon:6864;Parent=Msa0541560-mRNA-1
chr4_1 exon 25548932 25549095 25548932 ID=Msa0541560-mRNA-1:exon:6865;Parent=Msa0541560-mRNA-1
chr4_1 exon 25549191 25550433 25549191 ID=Msa0541560-mRNA-1:exon:6866;Parent=Msa0541560-mRNA-1
chr4_1 five_prime_UTR 25546327 25546424 25546327 ID=Msa0541560-mRNA-1:five_prime_utr;Parent=Msa0541560-mRNA-1
chr4_1 five_prime_UTR 25548932 25549026 25548932 ID=Msa0541560-mRNA-1:five_prime_utr;Parent=Msa0541560-mRNA-1
chr4_1 CDS 25549027 25549095 25549027 ID=Msa0541560-mRNA-1:cds;Parent=Msa0541560-mRNA-1
chr4_1 CDS 25549191 25550060 25549191 ID=Msa0541560-mRNA-1:cds;Parent=Msa0541560-mRNA-1
chr4_1 three_prime_UTR 25550061 25550433 25550061 ID=Msa0541560-mRNA-1:three_prime_utr;Parent=Msa0541560-mRNA-1
Gene Sequence

>Msa0541560

ATGGACGATGACCACCAATATGAAAACGGTAGGCATAAGATGGACTACTACAGAGGAGCACATTCCCTGTGGAATGTGGATCCCCAGCATCAAATAAAGGAACAAAATGCCCTAGTTATGAATAAAAAAATTAGGTCCATTATGGCTGAAAGGCAGGCAGCTCTTCTTGAACTTGAACTAGAGGCTGCTATATCTGAAAAGAATGAAGCCCTGGCTGCTCGAGACGTAGCCCTTCGGCAGAGGGATGAAGCACTTGCTCAGAAGGATAATGCTCTACTGGAACGGGACAATGCTCTTGCAGCCCTTCAAAGTCGGAATAGTACTGGCAACTTTCCATTCAATGGTGGAATTCAACGTGGATCCAAGCGGATGCACCATTCTTCAAACCATATATCCAACATGACAGAAGCAGCATATAGCACGACGGATATAATAATAAGAGATGCCTCCCCAGTTACTGTTATAACTTCTGAAGATGTCAAATCTCATCTAACTAAGAGAACAAAGGAGAACAAAGCATCACAGACACCTACCAAAATAAAGAAAATGGGCGAGGATTTAAATAGGAAGGCTTATTCTGAAGGGACAAAGATCAAATCTGAATGGGATAGGCAGGATGTTGGCTTGAATTTGATTGCTTTCGATGAAACTGTGATGCCTGTCCCAGTTTGCACGTGTACTGGAGTACCACGACAGTGCTACAAATGGGGGAATGGTGGATGGCAATCATCTTGTTGTACCACTACATTGTCAATGCATCCACTACCACAGCTTCCGAACAAGCGCCATGCTCGCATTGGAGGGCGGAAAATGAGCGGCAATGTTTTTAGACGACTTCTCAGTAGGTTTGCATCAGAAGGCCATGATTTATCTATACCATTGGATCTTAAGGATTACTGGGCCAGACATGGAACAAATCGTTACATTACTATCAAGTAG
Protein sequence

>Msa0541560

MDDDHQYENGRHKMDYYRGAHSLWNVDPQHQIKEQNALVMNKKIRSIMAERQAALLELELEAAISEKNEALAARDVALRQRDEALAQKDNALLERDNALAALQSRNSTGNFPFNGGIQRGSKRMHHSSNHISNMTEAAYSTTDIIIRDASPVTVITSEDVKSHLTKRTKENKASQTPTKIKKMGEDLNRKAYSEGTKIKSEWDRQDVGLNLIAFDETVMPVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMHPLPQLPNKRHARIGGRKMSGNVFRRLLSRFASEGHDLSIPLDLKDYWARHGTNRYITIK*