AlfalfaGEDB | Msa0541610

M. sativa cultivar zhongmu-4 / Msa0541610

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0050789 GO:0050793 GO:0050896 GO:0065007 GO:0097159 GO:1901363
PFAM: PF06217.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541610	XP_003630555.2	99.359	312	2	0	1	312	1	312	0.0	653

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541610	sp\|Q8S8C6\|BPC4_ARATH	58.280	314	111	5	1	312	1	296	1.49e-126	366

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541610	G7LI34	99.359	312	2	0	1	312	1	312	0.0	653

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TFs/TRs:

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Gene ID	Type	Classification
Msa0541610	TF	BBR-BPC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0541610	Msa0570300	0.803876	2.827597e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541610	MtrunA17_Chr8g0385961	99.359	312	2	0	1	312	1	312	0.0	653
Msa0541610	MtrunA17_Chr1g0156031	49.425	348	129	11	3	312	2	340	8.79e-106	312
Msa0541610	MtrunA17_Chr6g0479911	52.336	107	51	0	206	312	183	289	4.85e-43	149
Msa0541610	MtrunA17_Chr8g0375531	53.846	104	48	0	209	312	177	280	1.29e-39	140

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541610	AT2G21240.1	58.280	314	111	5	1	312	1	296	1.52e-127	366
Msa0541610	AT2G21240.2	58.280	314	111	5	1	312	1	296	1.52e-127	366
Msa0541610	AT4G38910.2	54.808	312	112	6	1	312	1	283	1.66e-114	332
Msa0541610	AT4G38910.1	56.228	281	96	5	33	312	4	258	2.93e-104	305
Msa0541610	AT5G42520.2	47.899	357	122	11	1	312	1	338	1.82e-90	273
Msa0541610	AT5G42520.1	47.899	357	126	12	1	312	1	342	2.89e-90	273
Msa0541610	AT5G42520.3	49.291	282	98	8	76	312	1	282	8.52e-77	236
Msa0541610	AT2G35550.2	45.806	155	77	1	165	312	72	226	1.59e-45	154
Msa0541610	AT2G35550.4	45.806	155	77	1	165	312	72	226	1.59e-45	154
Msa0541610	AT2G35550.3	45.806	155	77	1	165	312	72	226	1.59e-45	154

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Find 119 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAAGGGATCTCAAGG+GGG	0.635716	4_1:+25575330	None:intergenic
AAAATTCTCTGGATGCAAGA+TGG	0.605878	4_1:-25576702	Msa0541610:exon
AAACATGACACGGGTGAGGA+AGG	0.583722	4_1:-25579506	Msa0541610:five_prime_UTR
AAATAAAGGGATCTCAAGGG+GGG	0.662682	4_1:+25575331	None:intergenic
AAATGGGTGAGGATTTAAAT+AGG	0.370347	4_1:-25576044	Msa0541610:CDS
AACAAGCGCCATGCTCGCAT+TGG	0.488361	4_1:-25575811	Msa0541610:CDS
AACTAGAAATAAACAAAGGG+GGG	0.635667	4_1:+25575512	None:intergenic
AAGCGCCATGCTCGCATTGG+AGG	0.439433	4_1:-25575808	Msa0541610:CDS
AAGGATTACTGGGCCAGACA+TGG	0.576589	4_1:-25575700	Msa0541610:CDS
AATAGGAAGGCTTATTCTGA+AGG	0.504268	4_1:-25576027	Msa0541610:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGTTTCACCAAATGTACA+GGG	-	chr4_1:25575696-25575715	Msa0541610:CDS	30.0%
CTAATTAAAGCGACAAAAGA+TGG	+	chr4_1:25576000-25576019	None:intergenic	30.0%
AATTACGGTGGATATTTCAT+AGG	-	chr4_1:25576029-25576048	Msa0541610:CDS	30.0%
ACATTGAAATATCTTTCGCT+TGG	-	chr4_1:25576205-25576224	Msa0541610:CDS	30.0%
GGTGAAATATGTAATGAACA+CGG	+	chr4_1:25576321-25576340	None:intergenic	30.0%
CAAGTAGTTATTGATGAAAC+AGG	+	chr4_1:25576369-25576388	None:intergenic	30.0%
CAATTTATAAGTTGTGTCTC+TGG	-	chr4_1:25576515-25576534	Msa0541610:CDS	30.0%
TACATCAAATAGAACCACAA+GGG	+	chr4_1:25576630-25576649	None:intergenic	30.0%
TTACATCAAATAGAACCACA+AGG	+	chr4_1:25576631-25576650	None:intergenic	30.0%
TGTCCAGCTTATATTTGAAA+AGG	-	chr4_1:25576905-25576924	Msa0541610:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	25575297	25579531	25575297	ID=Msa0541610;Name=Msa0541610
chr4_1	mRNA	25575297	25579531	25575297	ID=Msa0541610-mRNA-1;Parent=Msa0541610;Name=Msa0541610-mRNA-1;_AED=0.16;_eAED=0.16;_QI=193\|1\|1\|1\|0.5\|0.33\|3\|375\|312
chr4_1	exon	25575297	25576541	25575297	ID=Msa0541610-mRNA-1:exon:6888;Parent=Msa0541610-mRNA-1
chr4_1	exon	25576637	25576800	25576637	ID=Msa0541610-mRNA-1:exon:6887;Parent=Msa0541610-mRNA-1
chr4_1	exon	25579434	25579531	25579434	ID=Msa0541610-mRNA-1:exon:6886;Parent=Msa0541610-mRNA-1
chr4_1	five_prime_UTR	25579434	25579531	25579434	ID=Msa0541610-mRNA-1:five_prime_utr;Parent=Msa0541610-mRNA-1
chr4_1	five_prime_UTR	25576706	25576800	25576706	ID=Msa0541610-mRNA-1:five_prime_utr;Parent=Msa0541610-mRNA-1
chr4_1	CDS	25576637	25576705	25576637	ID=Msa0541610-mRNA-1:cds;Parent=Msa0541610-mRNA-1
chr4_1	CDS	25575672	25576541	25575672	ID=Msa0541610-mRNA-1:cds;Parent=Msa0541610-mRNA-1
chr4_1	three_prime_UTR	25575297	25575671	25575297	ID=Msa0541610-mRNA-1:three_prime_utr;Parent=Msa0541610-mRNA-1

Gene Sequence

>Msa0541610

ATGGACGATGACCGCCAATATGAAAATGGTAGGCATAAGATGGACTACTACAGAGGAGCACATTCCCTGTGGAATGTGGATCCCCAGCATCAAATAAAGGAACAAAATGCCCTAGTTATGAATAAAAAAATTAGGTCCATTATGGCTGAAAGGCAGGCAGCTCTTCTTGAACTTGAACTAGAGGCTGCTATATCTGAAAAGAATGAAGCCCTGGCTGCTCGAGACGTAGCCCTTCGGCAGAGGGATGAAGCACTTGCTCAGAGGGATAATGCTCTACTGGAACGGGACAATGCTCTTGCAGCCCTTCAAAGTCGGAATAGTACTGGCAACTTTCCATTCAATGGTGGAATTCAACGTGGATCCAAGCGGATGCACCATTCTTCAAACCATATATCCAACATGACAGAAGCAGCATATAGCACGACGGATATAATAATAAGAGATGCCTCCCCAGTTACTGTTATAACTTCTGAAGATGTCAAATCTCATCTAACTAAGAGAACAAAGGAGAACAAAGCATCACAGACACCTACCAAAATAAAGAAAATGGGTGAGGATTTAAATAGGAAGGCTTATTCTGAAGGGACAAAGATCAAATCTGAATGGGATAGGCAGGATGTTGGCTTGAATTTGATTGCTTTCGATGAAACTGTGATGCCTGTCCCAGTTTGCACGTGTACTGGAGTACCACGACAGTGCTACAAATGGGGGAATGGTGGATGGCAATCATCTTGTTGTACCACTACATTGTCAATGCATCCACTACCACAGCTCCCGAACAAGCGCCATGCTCGCATTGGAGGGCGGAAAATGAGCGGCAATGTTTTTAGACGACTTCTCAGTAGGTTTGCATCAGAAGGCCATGATTTATCTATACCATTGGATCTTAAGGATTACTGGGCCAGACATGGAACAAATCGTTACATTACTATCAAGTAG

Protein sequence

>Msa0541610

MDDDRQYENGRHKMDYYRGAHSLWNVDPQHQIKEQNALVMNKKIRSIMAERQAALLELELEAAISEKNEALAARDVALRQRDEALAQRDNALLERDNALAALQSRNSTGNFPFNGGIQRGSKRMHHSSNHISNMTEAAYSTTDIIIRDASPVTVITSEDVKSHLTKRTKENKASQTPTKIKKMGEDLNRKAYSEGTKIKSEWDRQDVGLNLIAFDETVMPVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMHPLPQLPNKRHARIGGRKMSGNVFRRLLSRFASEGHDLSIPLDLKDYWARHGTNRYITIK*