Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541610 | XP_003630555.2 | 99.359 | 312 | 2 | 0 | 1 | 312 | 1 | 312 | 0.0 | 653 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541610 | sp|Q8S8C6|BPC4_ARATH | 58.280 | 314 | 111 | 5 | 1 | 312 | 1 | 296 | 1.49e-126 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541610 | G7LI34 | 99.359 | 312 | 2 | 0 | 1 | 312 | 1 | 312 | 0.0 | 653 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0541610 | TF | BBR-BPC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0541610 | Msa0570300 | 0.803876 | 2.827597e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541610 | MtrunA17_Chr8g0385961 | 99.359 | 312 | 2 | 0 | 1 | 312 | 1 | 312 | 0.0 | 653 |
| Msa0541610 | MtrunA17_Chr1g0156031 | 49.425 | 348 | 129 | 11 | 3 | 312 | 2 | 340 | 8.79e-106 | 312 |
| Msa0541610 | MtrunA17_Chr6g0479911 | 52.336 | 107 | 51 | 0 | 206 | 312 | 183 | 289 | 4.85e-43 | 149 |
| Msa0541610 | MtrunA17_Chr8g0375531 | 53.846 | 104 | 48 | 0 | 209 | 312 | 177 | 280 | 1.29e-39 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541610 | AT2G21240.1 | 58.280 | 314 | 111 | 5 | 1 | 312 | 1 | 296 | 1.52e-127 | 366 |
| Msa0541610 | AT2G21240.2 | 58.280 | 314 | 111 | 5 | 1 | 312 | 1 | 296 | 1.52e-127 | 366 |
| Msa0541610 | AT4G38910.2 | 54.808 | 312 | 112 | 6 | 1 | 312 | 1 | 283 | 1.66e-114 | 332 |
| Msa0541610 | AT4G38910.1 | 56.228 | 281 | 96 | 5 | 33 | 312 | 4 | 258 | 2.93e-104 | 305 |
| Msa0541610 | AT5G42520.2 | 47.899 | 357 | 122 | 11 | 1 | 312 | 1 | 338 | 1.82e-90 | 273 |
| Msa0541610 | AT5G42520.1 | 47.899 | 357 | 126 | 12 | 1 | 312 | 1 | 342 | 2.89e-90 | 273 |
| Msa0541610 | AT5G42520.3 | 49.291 | 282 | 98 | 8 | 76 | 312 | 1 | 282 | 8.52e-77 | 236 |
| Msa0541610 | AT2G35550.2 | 45.806 | 155 | 77 | 1 | 165 | 312 | 72 | 226 | 1.59e-45 | 154 |
| Msa0541610 | AT2G35550.4 | 45.806 | 155 | 77 | 1 | 165 | 312 | 72 | 226 | 1.59e-45 | 154 |
| Msa0541610 | AT2G35550.3 | 45.806 | 155 | 77 | 1 | 165 | 312 | 72 | 226 | 1.59e-45 | 154 |
| Msa0541610 | AT2G35550.1 | 45.806 | 155 | 77 | 1 | 165 | 312 | 117 | 271 | 2.50e-45 | 155 |
| Msa0541610 | AT1G14685.1 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.44e-44 | 152 |
| Msa0541610 | AT1G14685.4 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.44e-44 | 152 |
| Msa0541610 | AT1G14685.3 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.44e-44 | 152 |
| Msa0541610 | AT1G14685.2 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.44e-44 | 152 |
| Msa0541610 | AT1G68120.1 | 55.769 | 104 | 46 | 0 | 209 | 312 | 166 | 269 | 1.18e-41 | 145 |
| Msa0541610 | AT2G01930.2 | 52.336 | 107 | 51 | 0 | 206 | 312 | 177 | 283 | 6.83e-41 | 144 |
| Msa0541610 | AT2G01930.1 | 52.336 | 107 | 51 | 0 | 206 | 312 | 177 | 283 | 6.83e-41 | 144 |
Find 119 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGTTTATTTCTAGTTAC+TGG | 0.160666 | 4_1:-25575507 | Msa0541610:three_prime_UTR |
| ACCTACCAAAATAAAGAAAA+TGG | 0.208315 | 4_1:-25576061 | Msa0541610:CDS |
| CTTCTGTCATGTTGGATATA+TGG | 0.216505 | 4_1:+25576202 | None:intergenic |
| ATCTATACCATTGGATCTTA+AGG | 0.242442 | 4_1:-25575719 | Msa0541610:CDS |
| TCAGAAGTTATAACAGTAAC+TGG | 0.272157 | 4_1:+25576138 | None:intergenic |
| TTACAGCCATCGCATTTAAA+AGG | 0.279788 | 4_1:+25575462 | None:intergenic |
| CATTGGATCTTAAGGATTAC+TGG | 0.283657 | 4_1:-25575711 | Msa0541610:CDS |
| GATTAGTAATGTACAGAAAA+AGG | 0.297885 | 4_1:+25575375 | None:intergenic |
| TTTGTTCCTTTATTTGATGC+TGG | 0.301136 | 4_1:+25576505 | None:intergenic |
| TGGTGATAGGCGGTCTAAAA+AGG | 0.310805 | 4_1:+25575615 | None:intergenic |
| TGCGAGCATGGCGCTTGTTC+GGG | 0.316955 | 4_1:+25575815 | None:intergenic |
| ATGCGAGCATGGCGCTTGTT+CGG | 0.321845 | 4_1:+25575814 | None:intergenic |
| TTGCAACAGATGCGGTAAAT+TGG | 0.333539 | 4_1:+25576723 | None:intergenic |
| ACTCCAGTACACGTGCAAAC+TGG | 0.357093 | 4_1:+25575925 | None:intergenic |
| TTGTTCCTTTATTTGATGCT+GGG | 0.361945 | 4_1:+25576506 | None:intergenic |
| AAATGGGTGAGGATTTAAAT+AGG | 0.370347 | 4_1:-25576044 | Msa0541610:CDS |
| GATGACCGCCAATATGAAAA+TGG | 0.387655 | 4_1:-25576677 | Msa0541610:CDS |
| TCTACATTTATAAAATTCAA+TGG | 0.388885 | 4_1:-25575307 | Msa0541610:three_prime_UTR |
| CTACATTTATAAAATTCAAT+GGG | 0.390303 | 4_1:-25575306 | Msa0541610:three_prime_UTR |
| GTAACGATTTGTTCCATGTC+TGG | 0.409057 | 4_1:+25575687 | None:intergenic |
| GTCCCAGTTTGCACGTGTAC+TGG | 0.410401 | 4_1:-25575928 | Msa0541610:CDS |
| CGTTGAATTCCACCATTGAA+TGG | 0.413813 | 4_1:+25576255 | None:intergenic |
| CAGTACTATTCCGACTTTGA+AGG | 0.424329 | 4_1:+25576286 | None:intergenic |
| TGCCTGCCTTTCAGCCATAA+TGG | 0.435049 | 4_1:+25576452 | None:intergenic |
| ACCACGACAGTGCTACAAAT+GGG | 0.437083 | 4_1:-25575902 | Msa0541610:CDS |
| AAGCGCCATGCTCGCATTGG+AGG | 0.439433 | 4_1:-25575808 | Msa0541610:CDS |
| GCATCTGTTGCAAAATTCTC+TGG | 0.440019 | 4_1:-25576713 | Msa0541610:five_prime_UTR |
| GGATCCCCAGCATCAAATAA+AGG | 0.448615 | 4_1:-25576511 | Msa0541610:CDS |
| GGATAATGCTCTACTGGAAC+GGG | 0.450868 | 4_1:-25576325 | Msa0541610:CDS |
| AGTAACTAGAAATAAACAAA+GGG | 0.452868 | 4_1:+25575509 | None:intergenic |
| CTCCAGTACACGTGCAAACT+GGG | 0.457013 | 4_1:+25575926 | None:intergenic |
| ACTGGCAACTTTCCATTCAA+TGG | 0.459914 | 4_1:-25576267 | Msa0541610:CDS |
| ATCTGAAAAGAATGAAGCCC+TGG | 0.461756 | 4_1:-25576397 | Msa0541610:CDS |
| GACAAAGATCAAATCTGAAT+GGG | 0.471460 | 4_1:-25576004 | Msa0541610:CDS |
| GTGCTTCATCCCTCTGCCGA+AGG | 0.475401 | 4_1:+25576358 | None:intergenic |
| CAAATCTGAATGGGATAGGC+AGG | 0.475987 | 4_1:-25575995 | Msa0541610:CDS |
| GTCCATTATGGCTGAAAGGC+AGG | 0.476045 | 4_1:-25576454 | Msa0541610:CDS |
| CCATGATTTATCTATACCAT+TGG | 0.476445 | 4_1:-25575728 | Msa0541610:CDS |
| GGACAAAGATCAAATCTGAA+TGG | 0.478623 | 4_1:-25576005 | Msa0541610:CDS |
| TGGATATATGGTTTGAAGAA+TGG | 0.483617 | 4_1:+25576214 | None:intergenic |
| TTTAAAAGATCAATAATCTC+TGG | 0.485677 | 4_1:+25576764 | None:intergenic |
| AACAAGCGCCATGCTCGCAT+TGG | 0.488361 | 4_1:-25575811 | Msa0541610:CDS |
| TCCGCCCTCCAATGCGAGCA+TGG | 0.489587 | 4_1:+25575803 | None:intergenic |
| ACTCGAAACAAATGAATGTC+AGG | 0.491577 | 4_1:+25575646 | None:intergenic |
| TGAAGAATGGTGCATCCGCT+TGG | 0.493558 | 4_1:+25576227 | None:intergenic |
| TACCACGACAGTGCTACAAA+TGG | 0.496139 | 4_1:-25575903 | Msa0541610:CDS |
| ATCAATAATCTCTGGCTGAA+AGG | 0.501409 | 4_1:+25576772 | None:intergenic |
| CCTACCAAAATAAAGAAAAT+GGG | 0.501513 | 4_1:-25576060 | Msa0541610:CDS |
| GGGTGAGGATTTAAATAGGA+AGG | 0.502160 | 4_1:-25576040 | Msa0541610:CDS |
| AATAGGAAGGCTTATTCTGA+AGG | 0.504268 | 4_1:-25576027 | Msa0541610:CDS |
| TGAAAATGGTAGGCATAAGA+TGG | 0.507675 | 4_1:-25576663 | Msa0541610:CDS |
| TGCTTGAGTTTAGCGCATGC+AGG | 0.511532 | 4_1:-25575557 | Msa0541610:three_prime_UTR |
| CTCAGTAGGTTTGCATCAGA+AGG | 0.511971 | 4_1:-25575751 | Msa0541610:CDS |
| AGCGCCATGCTCGCATTGGA+GGG | 0.517752 | 4_1:-25575807 | Msa0541610:CDS |
| TCAGAGGGATAATGCTCTAC+TGG | 0.518249 | 4_1:-25576331 | Msa0541610:CDS |
| GGGCTACGTCTCGAGCAGCC+AGG | 0.518686 | 4_1:+25576379 | None:intergenic |
| CTTCAAAGTCGGAATAGTAC+TGG | 0.519466 | 4_1:-25576285 | Msa0541610:CDS |
| TGTTCCTTTATTTGATGCTG+GGG | 0.520374 | 4_1:+25576507 | None:intergenic |
| AGTACTATTCCGACTTTGAA+GGG | 0.520694 | 4_1:+25576287 | None:intergenic |
| GGATGAAGCACTTGCTCAGA+GGG | 0.522036 | 4_1:-25576346 | Msa0541610:CDS |
| ATATGCTGCTTCTGTCATGT+TGG | 0.532878 | 4_1:+25576194 | None:intergenic |
| AGATCAAATCTGAATGGGAT+AGG | 0.533258 | 4_1:-25575999 | Msa0541610:CDS |
| CAAAATAAAGAAAATGGGTG+AGG | 0.545805 | 4_1:-25576055 | Msa0541610:CDS |
| GAGACGTAGCCCTTCGGCAG+AGG | 0.546456 | 4_1:-25576368 | Msa0541610:CDS |
| CCAATGGTATAGATAAATCA+TGG | 0.547636 | 4_1:+25575728 | None:intergenic |
| GGCTACGTCTCGAGCAGCCA+GGG | 0.552588 | 4_1:+25576380 | None:intergenic |
| TTGTTCGGGAGCTGTGGTAG+TGG | 0.554371 | 4_1:+25575829 | None:intergenic |
| CCCCATTTGTAGCACTGTCG+TGG | 0.555932 | 4_1:+25575901 | None:intergenic |
| ATTGGTCTCAAGAAGTCTTG+AGG | 0.556886 | 4_1:+25576741 | None:intergenic |
| CAGAAGTTATAACAGTAACT+GGG | 0.557616 | 4_1:+25576139 | None:intergenic |
| TTTAAATGTGCAGTGGAATG+TGG | 0.558628 | 4_1:-25576532 | Msa0541610:intron |
| CTGCTCGAGACGTAGCCCTT+CGG | 0.563490 | 4_1:-25576374 | Msa0541610:CDS |
| CTACAGAGGAGCACATTCCC+TGG | 0.565304 | 4_1:-25576636 | Msa0541610:intron |
| AGACGTAGCCCTTCGGCAGA+GGG | 0.565616 | 4_1:-25576367 | Msa0541610:CDS |
| AGAACTTACAGCTACAGAAA+CGG | 0.566961 | 4_1:+25579425 | None:intergenic |
| ATGACACGGGTGAGGAAGGA+AGG | 0.569855 | 4_1:-25579502 | Msa0541610:five_prime_UTR |
| CTCTTGCAGCCCTTCAAAGT+CGG | 0.574408 | 4_1:-25576296 | Msa0541610:CDS |
| AAGGATTACTGGGCCAGACA+TGG | 0.576589 | 4_1:-25575700 | Msa0541610:CDS |
| TGGCGCTTGTTCGGGAGCTG+TGG | 0.577720 | 4_1:+25575823 | None:intergenic |
| GCCATGCTCGCATTGGAGGG+CGG | 0.577730 | 4_1:-25575804 | Msa0541610:CDS |
| TGCTTCATCCCTCTGCCGAA+GGG | 0.577861 | 4_1:+25576359 | None:intergenic |
| CTGTAATCAAAACCATGCCT+TGG | 0.580020 | 4_1:-25575591 | Msa0541610:three_prime_UTR |
| GGGATAATGCTCTACTGGAA+CGG | 0.583003 | 4_1:-25576326 | Msa0541610:CDS |
| AAACATGACACGGGTGAGGA+AGG | 0.583722 | 4_1:-25579506 | Msa0541610:five_prime_UTR |
| GTACACGTGCAAACTGGGAC+AGG | 0.585669 | 4_1:+25575931 | None:intergenic |
| ATAGGAAGGCTTATTCTGAA+GGG | 0.587900 | 4_1:-25576026 | Msa0541610:CDS |
| ATTGGATCTTAAGGATTACT+GGG | 0.588784 | 4_1:-25575710 | Msa0541610:CDS |
| TCTTCTTGAACTTGAACTAG+AGG | 0.590105 | 4_1:-25576427 | Msa0541610:CDS |
| TTAGGTCCATTATGGCTGAA+AGG | 0.590519 | 4_1:-25576458 | Msa0541610:CDS |
| GAATGGGATAGGCAGGATGT+TGG | 0.593838 | 4_1:-25575988 | Msa0541610:CDS |
| CAGTAATCCTTAAGATCCAA+TGG | 0.595456 | 4_1:+25575712 | None:intergenic |
| AAAATTCTCTGGATGCAAGA+TGG | 0.605878 | 4_1:-25576702 | Msa0541610:exon |
| GGCAACTTTCCATTCAATGG+TGG | 0.607937 | 4_1:-25576264 | Msa0541610:CDS |
| TGATTACAGCTGGTGATAGG+CGG | 0.611104 | 4_1:+25575605 | None:intergenic |
| GGGAAAACATGACACGGGTG+AGG | 0.613798 | 4_1:-25579510 | Msa0541610:five_prime_UTR |
| CCACGACAGTGCTACAAATG+GGG | 0.618535 | 4_1:-25575901 | Msa0541610:CDS |
| CAGTAACTAGAAATAAACAA+AGG | 0.621529 | 4_1:+25575508 | None:intergenic |
| CATAAGATGGACTACTACAG+AGG | 0.628336 | 4_1:-25576650 | Msa0541610:CDS |
| CAAGCATATCGTGCTGACCA+AGG | 0.630042 | 4_1:+25575574 | None:intergenic |
| ATTGGAGGGCGGAAAATGAG+CGG | 0.633747 | 4_1:-25575793 | Msa0541610:CDS |
| AACTAGAAATAAACAAAGGG+GGG | 0.635667 | 4_1:+25575512 | None:intergenic |
| AAAATAAAGGGATCTCAAGG+GGG | 0.635716 | 4_1:+25575330 | None:intergenic |
| TACATTTATAAAATTCAATG+GGG | 0.636608 | 4_1:-25575305 | Msa0541610:three_prime_UTR |
| ATATCGTGCTGACCAAGGCA+TGG | 0.637602 | 4_1:+25575579 | None:intergenic |
| TAACTAGAAATAAACAAAGG+GGG | 0.640263 | 4_1:+25575511 | None:intergenic |
| ACCGCCAATATGAAAATGGT+AGG | 0.648489 | 4_1:-25576673 | Msa0541610:CDS |
| TCATCTAACTAAGAGAACAA+AGG | 0.650253 | 4_1:-25576103 | Msa0541610:CDS |
| CACGACAGTGCTACAAATGG+GGG | 0.651085 | 4_1:-25575900 | Msa0541610:CDS |
| AAATAAAGGGATCTCAAGGG+GGG | 0.662682 | 4_1:+25575331 | None:intergenic |
| GGGATGAAGCACTTGCTCAG+AGG | 0.669930 | 4_1:-25576347 | Msa0541610:CDS |
| AGTTATAACAGTAACTGGGG+AGG | 0.670600 | 4_1:+25576143 | None:intergenic |
| TGGGAAGGGAAAACATGACA+CGG | 0.674207 | 4_1:-25579516 | None:intergenic |
| AGAAGTTATAACAGTAACTG+GGG | 0.682187 | 4_1:+25576140 | None:intergenic |
| GTAACTAGAAATAAACAAAG+GGG | 0.686632 | 4_1:+25575510 | None:intergenic |
| GGGAAGGGAAAACATGACAC+GGG | 0.699552 | 4_1:-25579515 | None:intergenic |
| TGGATGCATTGACAATGTAG+TGG | 0.702687 | 4_1:+25575849 | None:intergenic |
| GAATTCAACGTGGATCCAAG+CGG | 0.708406 | 4_1:-25576242 | Msa0541610:CDS |
| TTCAATGGTGGAATTCAACG+TGG | 0.712678 | 4_1:-25576252 | Msa0541610:CDS |
| AGAAGCAGCATATAGCACGA+CGG | 0.752304 | 4_1:-25576184 | Msa0541610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATTTAAGGAAA+GGG | + | chr4_1:25576700-25576719 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAATTTAAGGAA+AGG | + | chr4_1:25576701-25576720 | None:intergenic | 10.0% |
| !! | GTAACAAAAAAAAAAATTTA+AGG | + | chr4_1:25576706-25576725 | None:intergenic | 10.0% |
| !!! | AATTTTTTTATTCATAACTA+GGG | + | chr4_1:25578330-25578349 | None:intergenic | 10.0% |
| !!! | TAATTTTTTTATTCATAACT+AGG | + | chr4_1:25578331-25578350 | None:intergenic | 10.0% |
| !! | TAGTTATGAATAAAAAAATT+AGG | - | chr4_1:25578330-25578349 | Msa0541610:intron | 10.0% |
| !! | TATAAATGTAGAAAAATAAA+GGG | + | chr4_1:25579491-25579510 | None:intergenic | 10.0% |
| !! | TTATAAATGTAGAAAAATAA+AGG | + | chr4_1:25579492-25579511 | None:intergenic | 10.0% |
| !! | AGAATAATAAAAATGGTAAT+CGG | + | chr4_1:25575519-25575538 | None:intergenic | 15.0% |
| !! | TAATTATGAGAATTTACAAT+AGG | - | chr4_1:25576059-25576078 | Msa0541610:CDS | 15.0% |
| !! | ACAACTAATAAATTAAACTT+GGG | + | chr4_1:25577893-25577912 | None:intergenic | 15.0% |
| !! | TACAACTAATAAATTAAACT+TGG | + | chr4_1:25577894-25577913 | None:intergenic | 15.0% |
| !! | TCTACATTTATAAAATTCAA+TGG | - | chr4_1:25579499-25579518 | Msa0541610:five_prime_UTR | 15.0% |
| !! | CTACATTTATAAAATTCAAT+GGG | - | chr4_1:25579500-25579519 | Msa0541610:five_prime_UTR | 15.0% |
| !! | TACATTTATAAAATTCAATG+GGG | - | chr4_1:25579501-25579520 | Msa0541610:five_prime_UTR | 15.0% |
| !! | GAATAATAAAAATGGTAATC+GGG | + | chr4_1:25575518-25575537 | None:intergenic | 20.0% |
| !! | GGTTTAGAGAATAATAAAAA+TGG | + | chr4_1:25575526-25575545 | None:intergenic | 20.0% |
| !! | TGGAAAAAGAAAGAATTAAA+GGG | + | chr4_1:25575675-25575694 | None:intergenic | 20.0% |
| !! | ATGGAAAAAGAAAGAATTAA+AGG | + | chr4_1:25575676-25575695 | None:intergenic | 20.0% |
| !! | TTTCATTTATTCCTCTTATT+TGG | - | chr4_1:25575908-25575927 | Msa0541610:CDS | 20.0% |
| !! | AATTAGTCACTGTTAAATTA+CGG | - | chr4_1:25576014-25576033 | Msa0541610:CDS | 20.0% |
| !! | TAACATGAATAACAATGTAT+TGG | + | chr4_1:25576150-25576169 | None:intergenic | 20.0% |
| !!! | ATACATTGTTATTCATGTTA+AGG | - | chr4_1:25576150-25576169 | Msa0541610:CDS | 20.0% |
| !!! | TCTGAAGGATTAATATTTTA+TGG | - | chr4_1:25576232-25576251 | Msa0541610:CDS | 20.0% |
| !! | AATATAAGATATGTGTACAA+TGG | - | chr4_1:25577075-25577094 | Msa0541610:intron | 20.0% |
| !! | ATGTTAAAGACACATATATA+TGG | + | chr4_1:25577229-25577248 | None:intergenic | 20.0% |
| !!! | ATTTCTTTGTTATTGTAGTT+TGG | + | chr4_1:25577645-25577664 | None:intergenic | 20.0% |
| !!! | TTGTAAAAAGATTTTCTACA+AGG | - | chr4_1:25577909-25577928 | Msa0541610:intron | 20.0% |
| !! | TTTAAAAGATCAATAATCTC+TGG | + | chr4_1:25578045-25578064 | None:intergenic | 20.0% |
| !! | TAAAAAAATTAGGTCCATTA+TGG | - | chr4_1:25578340-25578359 | Msa0541610:intron | 20.0% |
| !! | AGTAACTAGAAATAAACAAA+GGG | + | chr4_1:25579300-25579319 | None:intergenic | 20.0% |
| ! | ATTACATTACCTAGAAACAA+AGG | + | chr4_1:25575547-25575566 | None:intergenic | 25.0% |
| ! | AAAGAATTAAAGGGGAAAAA+AGG | + | chr4_1:25575666-25575685 | None:intergenic | 25.0% |
| ! | GGAAAAAGAAAGAATTAAAG+GGG | + | chr4_1:25575674-25575693 | None:intergenic | 25.0% |
| !! | TATTTGTATGTACTGATGAA+TGG | - | chr4_1:25575765-25575784 | Msa0541610:CDS | 25.0% |
| ! | AGAATGATGTGATCAAAAAT+TGG | - | chr4_1:25575869-25575888 | Msa0541610:CDS | 25.0% |
| !!! | ATGTTGAATTGCAAGTTTTT+TGG | - | chr4_1:25576102-25576121 | Msa0541610:CDS | 25.0% |
| ! | ATTCATGTTAAGGAAATAGT+AGG | - | chr4_1:25576160-25576179 | Msa0541610:CDS | 25.0% |
| !!! | GATTGATAGTCATATTCTTT+TGG | - | chr4_1:25576275-25576294 | Msa0541610:CDS | 25.0% |
| ! | TAGTATAGCTACATTAAGTA+AGG | + | chr4_1:25576574-25576593 | None:intergenic | 25.0% |
| !! | TTTTCCAGACTTCATATATA+TGG | + | chr4_1:25577437-25577456 | None:intergenic | 25.0% |
| ! | CATATTAGAATTTGAGCTTA+CGG | - | chr4_1:25577516-25577535 | Msa0541610:intron | 25.0% |
| !! | ACTTTACAAGTAGTTTTTGT+GGG | + | chr4_1:25577553-25577572 | None:intergenic | 25.0% |
| !! | TACTTTACAAGTAGTTTTTG+TGG | + | chr4_1:25577554-25577573 | None:intergenic | 25.0% |
| ! | ACTACAGTTGAATGAAAAAA+TGG | - | chr4_1:25577685-25577704 | Msa0541610:intron | 25.0% |
| ! | TCTTATATCAAAAGAAAGAC+CGG | + | chr4_1:25577812-25577831 | None:intergenic | 25.0% |
| ! | ACCTACCAAAATAAAGAAAA+TGG | - | chr4_1:25578745-25578764 | Msa0541610:intron | 25.0% |
| ! | CCTACCAAAATAAAGAAAAT+GGG | - | chr4_1:25578746-25578765 | Msa0541610:intron | 25.0% |
| ! | TAACTAGAAATAAACAAAGG+GGG | + | chr4_1:25579298-25579317 | None:intergenic | 25.0% |
| ! | GTAACTAGAAATAAACAAAG+GGG | + | chr4_1:25579299-25579318 | None:intergenic | 25.0% |
| ! | CAGTAACTAGAAATAAACAA+AGG | + | chr4_1:25579301-25579320 | None:intergenic | 25.0% |
| !!! | CTTTGTTTATTTCTAGTTAC+TGG | - | chr4_1:25579299-25579318 | Msa0541610:intron | 25.0% |
| ! | CGCATTTAAAAGGATAAAAA+TGG | + | chr4_1:25579337-25579356 | None:intergenic | 25.0% |
| !! | TTTTATCCTTTTAAATGCGA+TGG | - | chr4_1:25579338-25579357 | Msa0541610:intron | 25.0% |
| !! | TTTTCTAGGTGGTTTTTATT+TGG | - | chr4_1:25579392-25579411 | Msa0541610:intron | 25.0% |
| ! | GATTAGTAATGTACAGAAAA+AGG | + | chr4_1:25579434-25579453 | None:intergenic | 25.0% |
| ! | TTCTCTAAACCTTTGTTTCT+AGG | - | chr4_1:25575535-25575554 | Msa0541610:three_prime_UTR | 30.0% |
| ! | GTACATTTGGTGAAACAAAA+TGG | + | chr4_1:25575695-25575714 | None:intergenic | 30.0% |
| !! | TTTTGTTTCACCAAATGTAC+AGG | - | chr4_1:25575695-25575714 | Msa0541610:CDS | 30.0% |
| TTTGTTTCACCAAATGTACA+GGG | - | chr4_1:25575696-25575715 | Msa0541610:CDS | 30.0% | |
| CTAATTAAAGCGACAAAAGA+TGG | + | chr4_1:25576000-25576019 | None:intergenic | 30.0% | |
| AATTACGGTGGATATTTCAT+AGG | - | chr4_1:25576029-25576048 | Msa0541610:CDS | 30.0% | |
| ACATTGAAATATCTTTCGCT+TGG | - | chr4_1:25576205-25576224 | Msa0541610:CDS | 30.0% | |
| GGTGAAATATGTAATGAACA+CGG | + | chr4_1:25576321-25576340 | None:intergenic | 30.0% | |
| CAAGTAGTTATTGATGAAAC+AGG | + | chr4_1:25576369-25576388 | None:intergenic | 30.0% | |
| CAATTTATAAGTTGTGTCTC+TGG | - | chr4_1:25576515-25576534 | Msa0541610:CDS | 30.0% | |
| !! | TCTTGATTTGTAGTGAAAAG+AGG | - | chr4_1:25576538-25576557 | Msa0541610:intron | 30.0% |
| TACATCAAATAGAACCACAA+GGG | + | chr4_1:25576630-25576649 | None:intergenic | 30.0% | |
| TTACATCAAATAGAACCACA+AGG | + | chr4_1:25576631-25576650 | None:intergenic | 30.0% | |
| TGTCCAGCTTATATTTGAAA+AGG | - | chr4_1:25576905-25576924 | Msa0541610:intron | 30.0% | |
| GTCCAGCTTATATTTGAAAA+GGG | - | chr4_1:25576906-25576925 | Msa0541610:intron | 30.0% | |
| TGTATTTGTGTCAAGTTCTA+GGG | + | chr4_1:25577008-25577027 | None:intergenic | 30.0% | |
| TTCTAAATACATCACCTACT+GGG | + | chr4_1:25577046-25577065 | None:intergenic | 30.0% | |
| GGTGATGTATTTAGAAGATT+TGG | - | chr4_1:25577050-25577069 | Msa0541610:intron | 30.0% | |
| ! | ACTTCACAAATTGATTCTGT+GGG | + | chr4_1:25577326-25577345 | None:intergenic | 30.0% |
| CGTAAGCTCAAATTCTAATA+TGG | + | chr4_1:25577518-25577537 | None:intergenic | 30.0% | |
| TTTAAGAGTTCCACATTCAT+TGG | + | chr4_1:25577618-25577637 | None:intergenic | 30.0% | |
| TGTAGTTTCTGTACACAAAA+AGG | + | chr4_1:25577671-25577690 | None:intergenic | 30.0% | |
| GATGCATACAGTCATTAATA+TGG | - | chr4_1:25577707-25577726 | Msa0541610:intron | 30.0% | |
| TGAATAATTACCCTTCATTC+TGG | + | chr4_1:25577751-25577770 | None:intergenic | 30.0% | |
| CAGTTCTATACAAGTTTAAC+CGG | - | chr4_1:25577790-25577809 | Msa0541610:intron | 30.0% | |
| AATGAACAGCTTGTATCAAA+AGG | + | chr4_1:25577857-25577876 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTGGAAGGAACAAC+AGG | + | chr4_1:25577938-25577957 | None:intergenic | 30.0% |
| !! | TGCTTTTCTCATTTGTTAAC+AGG | - | chr4_1:25578006-25578025 | Msa0541610:intron | 30.0% |
| ! | TATGCCTACCATTTTCATAT+TGG | + | chr4_1:25578140-25578159 | None:intergenic | 30.0% |
| !! | ATTGGGTTGATTTATTGGAT+TGG | - | chr4_1:25578249-25578268 | Msa0541610:intron | 30.0% |
| ! | ATTGGATTTTAAATGTGCAG+TGG | - | chr4_1:25578267-25578286 | Msa0541610:intron | 30.0% |
| ! | TTGTTCCTTTATTTGATGCT+GGG | + | chr4_1:25578303-25578322 | None:intergenic | 30.0% |
| ! | TTTGTTCCTTTATTTGATGC+TGG | + | chr4_1:25578304-25578323 | None:intergenic | 30.0% |
| TGGATATATGGTTTGAAGAA+TGG | + | chr4_1:25578595-25578614 | None:intergenic | 30.0% | |
| AGAAGTTATAACAGTAACTG+GGG | + | chr4_1:25578669-25578688 | None:intergenic | 30.0% | |
| CAGAAGTTATAACAGTAACT+GGG | + | chr4_1:25578670-25578689 | None:intergenic | 30.0% | |
| TCAGAAGTTATAACAGTAAC+TGG | + | chr4_1:25578671-25578690 | None:intergenic | 30.0% | |
| TCATCTAACTAAGAGAACAA+AGG | - | chr4_1:25578703-25578722 | Msa0541610:intron | 30.0% | |
| !!! | CCCATTTTCTTTATTTTGGT+AGG | + | chr4_1:25578749-25578768 | None:intergenic | 30.0% |
| !! | CTCACCCATTTTCTTTATTT+TGG | + | chr4_1:25578753-25578772 | None:intergenic | 30.0% |
| CAAAATAAAGAAAATGGGTG+AGG | - | chr4_1:25578751-25578770 | Msa0541610:intron | 30.0% | |
| AAATGGGTGAGGATTTAAAT+AGG | - | chr4_1:25578762-25578781 | Msa0541610:intron | 30.0% | |
| GACAAAGATCAAATCTGAAT+GGG | - | chr4_1:25578802-25578821 | Msa0541610:intron | 30.0% | |
| CCAATGGTATAGATAAATCA+TGG | + | chr4_1:25579081-25579100 | None:intergenic | 30.0% | |
| CCATGATTTATCTATACCAT+TGG | - | chr4_1:25579078-25579097 | Msa0541610:intron | 30.0% | |
| ATCTATACCATTGGATCTTA+AGG | - | chr4_1:25579087-25579106 | Msa0541610:intron | 30.0% | |
| ATTGGATCTTAAGGATTACT+GGG | - | chr4_1:25579096-25579115 | Msa0541610:intron | 30.0% | |
| AACTAGAAATAAACAAAGGG+GGG | + | chr4_1:25579297-25579316 | None:intergenic | 30.0% | |
| ! | TTATGCACATGTGATTTTCT+AGG | - | chr4_1:25579378-25579397 | Msa0541610:intron | 30.0% |
| ! | GAGAAAAGTTTTCTATGCTA+CGG | + | chr4_1:25579456-25579475 | None:intergenic | 30.0% |
| AAAAATAAAGGGATCTCAAG+GGG | + | chr4_1:25579480-25579499 | None:intergenic | 30.0% | |
| GAAAAATAAAGGGATCTCAA+GGG | + | chr4_1:25579481-25579500 | None:intergenic | 30.0% | |
| AGAAAAATAAAGGGATCTCA+AGG | + | chr4_1:25579482-25579501 | None:intergenic | 30.0% | |
| AGAACTTACAGCTACAGAAA+CGG | + | chr4_1:25575384-25575403 | None:intergenic | 35.0% | |
| ATGGTAATCGGGAAAATACA+GGG | + | chr4_1:25575507-25575526 | None:intergenic | 35.0% | |
| AATGGTAATCGGGAAAATAC+AGG | + | chr4_1:25575508-25575527 | None:intergenic | 35.0% | |
| ! | GTATGTACTGATGAATGGAA+TGG | - | chr4_1:25575770-25575789 | Msa0541610:CDS | 35.0% |
| TACTGATGAATGGAATGGAA+TGG | - | chr4_1:25575775-25575794 | Msa0541610:CDS | 35.0% | |
| GCTTTATGTGCAATAGTGTA+TGG | - | chr4_1:25575841-25575860 | Msa0541610:CDS | 35.0% | |
| TAGTCACTGTTAAATTACGG+TGG | - | chr4_1:25576017-25576036 | Msa0541610:CDS | 35.0% | |
| TTACAATAGGCCATTAGCTA+AGG | - | chr4_1:25576072-25576091 | Msa0541610:CDS | 35.0% | |
| CATAGTGAAACCTTAGCTAA+TGG | + | chr4_1:25576085-25576104 | None:intergenic | 35.0% | |
| CTAGAGACAACATGTTACAT+GGG | + | chr4_1:25576342-25576361 | None:intergenic | 35.0% | |
| TTAGACGTATTGCTTATGTG+TGG | - | chr4_1:25576438-25576457 | Msa0541610:CDS | 35.0% | |
| ! | AAATGTTTTTCTTCCCCTTG+TGG | - | chr4_1:25576613-25576632 | Msa0541610:intron | 35.0% |
| ACATCAAATAGAACCACAAG+GGG | + | chr4_1:25576629-25576648 | None:intergenic | 35.0% | |
| TTTAAGGAAAGGGAAACTTG+CGG | + | chr4_1:25576690-25576709 | None:intergenic | 35.0% | |
| AAATATAAGCTGGACACTAG+AGG | + | chr4_1:25576901-25576920 | None:intergenic | 35.0% | |
| ! | CTCCCTTTTCAAATATAAGC+TGG | + | chr4_1:25576911-25576930 | None:intergenic | 35.0% |
| CAGCTTATATTTGAAAAGGG+AGG | - | chr4_1:25576909-25576928 | Msa0541610:intron | 35.0% | |
| TTGATTGAATCCAAACACAG+TGG | - | chr4_1:25576980-25576999 | Msa0541610:intron | 35.0% | |
| CTGTATTTGTGTCAAGTTCT+AGG | + | chr4_1:25577009-25577028 | None:intergenic | 35.0% | |
| AACTTGACACAAATACAGCT+AGG | - | chr4_1:25577011-25577030 | Msa0541610:intron | 35.0% | |
| ACTTGACACAAATACAGCTA+GGG | - | chr4_1:25577012-25577031 | Msa0541610:intron | 35.0% | |
| CTTCTAAATACATCACCTAC+TGG | + | chr4_1:25577047-25577066 | None:intergenic | 35.0% | |
| CTTATAGAGCCTACAAATGT+AGG | - | chr4_1:25577165-25577184 | Msa0541610:intron | 35.0% | |
| AAAGTCCTTCCTACATTTGT+AGG | + | chr4_1:25577177-25577196 | None:intergenic | 35.0% | |
| GAACATGTTGGACAAATGAA+AGG | + | chr4_1:25577270-25577289 | None:intergenic | 35.0% | |
| AAATTGTGAGAGGAACATGT+TGG | + | chr4_1:25577282-25577301 | None:intergenic | 35.0% | |
| ! | ACATGTTCCTCTCACAATTT+TGG | - | chr4_1:25577282-25577301 | Msa0541610:intron | 35.0% |
| ! | CTTCACAAATTGATTCTGTG+GGG | + | chr4_1:25577325-25577344 | None:intergenic | 35.0% |
| ! | CACTTCACAAATTGATTCTG+TGG | + | chr4_1:25577327-25577346 | None:intergenic | 35.0% |
| CAGAATCAATTTGTGAAGTG+AGG | - | chr4_1:25577327-25577346 | Msa0541610:intron | 35.0% | |
| TCATATATCTCTAGTCGAAG+TGG | - | chr4_1:25577380-25577399 | Msa0541610:intron | 35.0% | |
| CATATATCTCTAGTCGAAGT+GGG | - | chr4_1:25577381-25577400 | Msa0541610:intron | 35.0% | |
| ACTTCATATATATGGTCCTG+CGG | + | chr4_1:25577429-25577448 | None:intergenic | 35.0% | |
| AGGACCATATATATGAAGTC+TGG | - | chr4_1:25577430-25577449 | Msa0541610:intron | 35.0% | |
| TTCCACATTCATTGGAGATA+TGG | + | chr4_1:25577610-25577629 | None:intergenic | 35.0% | |
| GCATACAGTCATTAATATGG+TGG | - | chr4_1:25577710-25577729 | Msa0541610:intron | 35.0% | |
| GAAGGGTAATTATTCAAGCT+TGG | - | chr4_1:25577755-25577774 | Msa0541610:intron | 35.0% | |
| TACAAGCTGTTCATTCTGAT+TGG | - | chr4_1:25577862-25577881 | Msa0541610:intron | 35.0% | |
| !!! | GCAGAGAGAATTTTTTTGGA+AGG | + | chr4_1:25577947-25577966 | None:intergenic | 35.0% |
| GGCATCAAGTCAATAAACAA+GGG | + | chr4_1:25577979-25577998 | None:intergenic | 35.0% | |
| TGGCATCAAGTCAATAAACA+AGG | + | chr4_1:25577980-25577999 | None:intergenic | 35.0% | |
| AAATGAGAAAAGCAACAGCT+TGG | + | chr4_1:25578000-25578019 | None:intergenic | 35.0% | |
| ATCAATAATCTCTGGCTGAA+AGG | + | chr4_1:25578037-25578056 | None:intergenic | 35.0% | |
| ! | AGAGAATTTTGCAACAGATG+CGG | + | chr4_1:25578094-25578113 | None:intergenic | 35.0% |
| AAAATTCTCTGGATGCAAGA+TGG | - | chr4_1:25578104-25578123 | Msa0541610:intron | 35.0% | |
| TGAAAATGGTAGGCATAAGA+TGG | - | chr4_1:25578143-25578162 | Msa0541610:intron | 35.0% | |
| TATGTGCATTCTACTTACCA+GGG | + | chr4_1:25578190-25578209 | None:intergenic | 35.0% | |
| ATATGTGCATTCTACTTACC+AGG | + | chr4_1:25578191-25578210 | None:intergenic | 35.0% | |
| !! | TTAACTTGCAGTTGCACTAT+TGG | - | chr4_1:25578231-25578250 | Msa0541610:intron | 35.0% |
| ! | TAACTTGCAGTTGCACTATT+GGG | - | chr4_1:25578232-25578251 | Msa0541610:intron | 35.0% |
| !! | GCACTATTGGGTTGATTTAT+TGG | - | chr4_1:25578244-25578263 | Msa0541610:intron | 35.0% |
| TTTAAATGTGCAGTGGAATG+TGG | - | chr4_1:25578274-25578293 | Msa0541610:intron | 35.0% | |
| ! | TGTTCCTTTATTTGATGCTG+GGG | + | chr4_1:25578302-25578321 | None:intergenic | 35.0% |
| TCTTCTTGAACTTGAACTAG+AGG | - | chr4_1:25578379-25578398 | Msa0541610:intron | 35.0% | |
| AGTACTATTCCGACTTTGAA+GGG | + | chr4_1:25578522-25578541 | None:intergenic | 35.0% | |
| CTTCTGTCATGTTGGATATA+TGG | + | chr4_1:25578607-25578626 | None:intergenic | 35.0% | |
| AATAGGAAGGCTTATTCTGA+AGG | - | chr4_1:25578779-25578798 | Msa0541610:intron | 35.0% | |
| ATAGGAAGGCTTATTCTGAA+GGG | - | chr4_1:25578780-25578799 | Msa0541610:intron | 35.0% | |
| GGACAAAGATCAAATCTGAA+TGG | - | chr4_1:25578801-25578820 | Msa0541610:intron | 35.0% | |
| AGATCAAATCTGAATGGGAT+AGG | - | chr4_1:25578807-25578826 | Msa0541610:intron | 35.0% | |
| ! | TTTTTAGACGACTTCTCAGT+AGG | - | chr4_1:25579041-25579060 | Msa0541610:intron | 35.0% |
| CAGTAATCCTTAAGATCCAA+TGG | + | chr4_1:25579097-25579116 | None:intergenic | 35.0% | |
| CATTGGATCTTAAGGATTAC+TGG | - | chr4_1:25579095-25579114 | Msa0541610:intron | 35.0% | |
| ACTCGAAACAAATGAATGTC+AGG | + | chr4_1:25579163-25579182 | None:intergenic | 35.0% | |
| !! | TTTTGATTACAGCTGGTGAT+AGG | + | chr4_1:25579207-25579226 | None:intergenic | 35.0% |
| !! | GCAGGTGATTTTTCAATAGA+AGG | - | chr4_1:25579267-25579286 | Msa0541610:intron | 35.0% |
| TTACAGCCATCGCATTTAAA+AGG | + | chr4_1:25579347-25579366 | None:intergenic | 35.0% | |
| AGAAAAAGGAAAGAACATGC+AGG | + | chr4_1:25579420-25579439 | None:intergenic | 35.0% | |
| AAAATAAAGGGATCTCAAGG+GGG | + | chr4_1:25579479-25579498 | None:intergenic | 35.0% | |
| AGAACATGTCCCTGTACATT+TGG | + | chr4_1:25575708-25575727 | None:intergenic | 40.0% | |
| AACCCATGACCACTTACTTA+GGG | + | chr4_1:25575949-25575968 | None:intergenic | 40.0% | |
| CTTTCGCTTGGTAAATCTGA+AGG | - | chr4_1:25576217-25576236 | Msa0541610:CDS | 40.0% | |
| CCTAGAGACAACATGTTACA+TGG | + | chr4_1:25576343-25576362 | None:intergenic | 40.0% | |
| CCATGTAACATGTTGTCTCT+AGG | - | chr4_1:25576340-25576359 | Msa0541610:CDS | 40.0% | |
| AGTTTGTGGTCAAGAAAGAG+GGG | + | chr4_1:25577132-25577151 | None:intergenic | 40.0% | |
| CAGTTTGTGGTCAAGAAAGA+GGG | + | chr4_1:25577133-25577152 | None:intergenic | 40.0% | |
| ACAGTTTGTGGTCAAGAAAG+AGG | + | chr4_1:25577134-25577153 | None:intergenic | 40.0% | |
| TAGAGCCTACAAATGTAGGA+AGG | - | chr4_1:25577169-25577188 | Msa0541610:intron | 40.0% | |
| CATATATATGGACAAACCCC+TGG | + | chr4_1:25577217-25577236 | None:intergenic | 40.0% | |
| GTGGGGTTGAAATAAGTCTT+GGG | + | chr4_1:25577308-25577327 | None:intergenic | 40.0% | |
| TGTGGGGTTGAAATAAGTCT+TGG | + | chr4_1:25577309-25577328 | None:intergenic | 40.0% | |
| AAGTAGAGCTTACAAGGCTT+GGG | + | chr4_1:25577357-25577376 | None:intergenic | 40.0% | |
| TAAGTAGAGCTTACAAGGCT+TGG | + | chr4_1:25577358-25577377 | None:intergenic | 40.0% | |
| ! | AAGCCTTGTAAGCTCTACTT+AGG | - | chr4_1:25577357-25577376 | Msa0541610:intron | 40.0% |
| TGACCTAAGTAGAGCTTACA+AGG | + | chr4_1:25577363-25577382 | None:intergenic | 40.0% | |
| CTTCATATATATGGTCCTGC+GGG | + | chr4_1:25577428-25577447 | None:intergenic | 40.0% | |
| GAGTGGAATAACAGAGATTG+TGG | - | chr4_1:25577461-25577480 | Msa0541610:intron | 40.0% | |
| TCTATCTCAGACCTGTTGTT+TGG | + | chr4_1:25577487-25577506 | None:intergenic | 40.0% | |
| AAGCCATATACGCACTACTT+AGG | - | chr4_1:25577584-25577603 | Msa0541610:intron | 40.0% | |
| CAGTCATTAATATGGTGGCA+AGG | - | chr4_1:25577715-25577734 | Msa0541610:intron | 40.0% | |
| ! | ATATGGTGGCAAGGTTTGTT+TGG | - | chr4_1:25577724-25577743 | Msa0541610:intron | 40.0% |
| ! | TATGGTGGCAAGGTTTGTTT+GGG | - | chr4_1:25577725-25577744 | Msa0541610:intron | 40.0% |
| TTTGTTTGGGCCAGAATGAA+GGG | - | chr4_1:25577738-25577757 | Msa0541610:intron | 40.0% | |
| GAACAGCTTGTATCAAAAGG+AGG | + | chr4_1:25577854-25577873 | None:intergenic | 40.0% | |
| !!! | GGCAGCAGAGAGAATTTTTT+TGG | + | chr4_1:25577951-25577970 | None:intergenic | 40.0% |
| AGTCAATAAACAAGGGAGAG+AGG | + | chr4_1:25577972-25577991 | None:intergenic | 40.0% | |
| ! | ATTGGTCTCAAGAAGTCTTG+AGG | + | chr4_1:25578068-25578087 | None:intergenic | 40.0% |
| TTGCAACAGATGCGGTAAAT+TGG | + | chr4_1:25578086-25578105 | None:intergenic | 40.0% | |
| GCATCTGTTGCAAAATTCTC+TGG | - | chr4_1:25578093-25578112 | Msa0541610:intron | 40.0% | |
| GATGACCGCCAATATGAAAA+TGG | - | chr4_1:25578129-25578148 | Msa0541610:intron | 40.0% | |
| ACCGCCAATATGAAAATGGT+AGG | - | chr4_1:25578133-25578152 | Msa0541610:intron | 40.0% | |
| ! | GCCTACCATTTTCATATTGG+CGG | + | chr4_1:25578137-25578156 | None:intergenic | 40.0% |
| !! | CATAAGATGGACTACTACAG+AGG | - | chr4_1:25578156-25578175 | Msa0541610:intron | 40.0% |
| TTAGGTCCATTATGGCTGAA+AGG | - | chr4_1:25578348-25578367 | Msa0541610:intron | 40.0% | |
| ATCTGAAAAGAATGAAGCCC+TGG | - | chr4_1:25578409-25578428 | Msa0541610:intron | 40.0% | |
| CAGTACTATTCCGACTTTGA+AGG | + | chr4_1:25578523-25578542 | None:intergenic | 40.0% | |
| CTTCAAAGTCGGAATAGTAC+TGG | - | chr4_1:25578521-25578540 | Msa0541610:intron | 40.0% | |
| ACTGGCAACTTTCCATTCAA+TGG | - | chr4_1:25578539-25578558 | Msa0541610:intron | 40.0% | |
| CGTTGAATTCCACCATTGAA+TGG | + | chr4_1:25578554-25578573 | None:intergenic | 40.0% | |
| ! | TTCAATGGTGGAATTCAACG+TGG | - | chr4_1:25578554-25578573 | Msa0541610:intron | 40.0% |
| ! | ATATGCTGCTTCTGTCATGT+TGG | + | chr4_1:25578615-25578634 | None:intergenic | 40.0% |
| AGTTATAACAGTAACTGGGG+AGG | + | chr4_1:25578666-25578685 | None:intergenic | 40.0% | |
| GGGTGAGGATTTAAATAGGA+AGG | - | chr4_1:25578766-25578785 | Msa0541610:intron | 40.0% | |
| ! | TGGATGCATTGACAATGTAG+TGG | + | chr4_1:25578960-25578979 | None:intergenic | 40.0% |
| ! | GTAACGATTTGTTCCATGTC+TGG | + | chr4_1:25579122-25579141 | None:intergenic | 40.0% |
| CTGTAATCAAAACCATGCCT+TGG | - | chr4_1:25579215-25579234 | Msa0541610:intron | 40.0% | |
| ! | TGCACATGTGATTTTCTAGG+TGG | - | chr4_1:25579381-25579400 | Msa0541610:intron | 40.0% |
| AAATAAAGGGATCTCAAGGG+GGG | + | chr4_1:25579478-25579497 | None:intergenic | 40.0% | |
| CACCCTAAGTAAGTGGTCAT+GGG | - | chr4_1:25575944-25575963 | Msa0541610:CDS | 45.0% | |
| GAACCCATGACCACTTACTT+AGG | + | chr4_1:25575950-25575969 | None:intergenic | 45.0% | |
| ATTCTCCCTTCGAAACAGTC+CGG | + | chr4_1:25575977-25575996 | None:intergenic | 45.0% | |
| !! | AGGAACTGAGACTGATTCGT+TGG | - | chr4_1:25576180-25576199 | Msa0541610:CDS | 45.0% |
| GACGTATTGCTTATGTGTGG+TGG | - | chr4_1:25576441-25576460 | Msa0541610:CDS | 45.0% | |
| !! | ATTGCTTATGTGTGGTGGAC+AGG | - | chr4_1:25576446-25576465 | Msa0541610:CDS | 45.0% |
| !! | TTGCTTATGTGTGGTGGACA+GGG | - | chr4_1:25576447-25576466 | Msa0541610:CDS | 45.0% |
| !! | TTCTAGGGTACCACTGTGTT+TGG | + | chr4_1:25576993-25577012 | None:intergenic | 45.0% |
| GTCAGACTGCATACAGTTTG+TGG | + | chr4_1:25577146-25577165 | None:intergenic | 45.0% | |
| !! | TCTCTAGAGTGTCAAGTACC+AGG | - | chr4_1:25577196-25577215 | Msa0541610:intron | 45.0% |
| !! | CTCTAGAGTGTCAAGTACCA+GGG | - | chr4_1:25577197-25577216 | Msa0541610:intron | 45.0% |
| ! | TCTAGAGTGTCAAGTACCAG+GGG | - | chr4_1:25577198-25577217 | Msa0541610:intron | 45.0% |
| TCTTGGGCCAAAATTGTGAG+AGG | + | chr4_1:25577292-25577311 | None:intergenic | 45.0% | |
| ATATATATGGTCCTGCGGGT+GGG | + | chr4_1:25577424-25577443 | None:intergenic | 45.0% | |
| GAAGTCTGGAAAAATGCGAG+TGG | - | chr4_1:25577444-25577463 | Msa0541610:intron | 45.0% | |
| AGAGATTGTGGCCAAACAAC+AGG | - | chr4_1:25577473-25577492 | Msa0541610:intron | 45.0% | |
| TGGCCTAAGTAGTGCGTATA+TGG | + | chr4_1:25577590-25577609 | None:intergenic | 45.0% | |
| GGCCATATCTCCAATGAATG+TGG | - | chr4_1:25577605-25577624 | Msa0541610:intron | 45.0% | |
| GTTTGTTTGGGCCAGAATGA+AGG | - | chr4_1:25577737-25577756 | Msa0541610:intron | 45.0% | |
| GGATCCCCAGCATCAAATAA+AGG | - | chr4_1:25578295-25578314 | Msa0541610:intron | 45.0% | |
| TCAGAGGGATAATGCTCTAC+TGG | - | chr4_1:25578475-25578494 | Msa0541610:intron | 45.0% | |
| GGGATAATGCTCTACTGGAA+CGG | - | chr4_1:25578480-25578499 | Msa0541610:intron | 45.0% | |
| GGATAATGCTCTACTGGAAC+GGG | - | chr4_1:25578481-25578500 | Msa0541610:intron | 45.0% | |
| GGCAACTTTCCATTCAATGG+TGG | - | chr4_1:25578542-25578561 | Msa0541610:intron | 45.0% | |
| GAATTCAACGTGGATCCAAG+CGG | - | chr4_1:25578564-25578583 | Msa0541610:intron | 45.0% | |
| AGAAGCAGCATATAGCACGA+CGG | - | chr4_1:25578622-25578641 | Msa0541610:intron | 45.0% | |
| CAAATCTGAATGGGATAGGC+AGG | - | chr4_1:25578811-25578830 | Msa0541610:intron | 45.0% | |
| TACCACGACAGTGCTACAAA+TGG | - | chr4_1:25578903-25578922 | Msa0541610:intron | 45.0% | |
| ACCACGACAGTGCTACAAAT+GGG | - | chr4_1:25578904-25578923 | Msa0541610:intron | 45.0% | |
| CTCAGTAGGTTTGCATCAGA+AGG | - | chr4_1:25579055-25579074 | Msa0541610:intron | 45.0% | |
| TGGTGATAGGCGGTCTAAAA+AGG | + | chr4_1:25579194-25579213 | None:intergenic | 45.0% | |
| TGATTACAGCTGGTGATAGG+CGG | + | chr4_1:25579204-25579223 | None:intergenic | 45.0% | |
| !!! | GGCATGGTTTTGATTACAGC+TGG | + | chr4_1:25579214-25579233 | None:intergenic | 45.0% |
| AAACATGACACGGGTGAGGA+AGG | - | chr4_1:25575300-25575319 | Msa0541610:three_prime_UTR | 50.0% | |
| TCTCTCTCTCTCTCTCTCTC+TGG | - | chr4_1:25575343-25575362 | Msa0541610:three_prime_UTR | 50.0% | |
| CGAGGGCAGTACCAAATAAG+AGG | + | chr4_1:25575922-25575941 | None:intergenic | 50.0% | |
| ! | CACTTACTTAGGGTGCTCGA+GGG | + | chr4_1:25575939-25575958 | None:intergenic | 50.0% |
| GCACCCTAAGTAAGTGGTCA+TGG | - | chr4_1:25575943-25575962 | Msa0541610:CDS | 50.0% | |
| AGTGGTCATGGGTTCAATCC+CGG | - | chr4_1:25575955-25575974 | Msa0541610:CDS | 50.0% | |
| TCAATCCCGGACTGTTTCGA+AGG | - | chr4_1:25575968-25575987 | Msa0541610:CDS | 50.0% | |
| CAATCCCGGACTGTTTCGAA+GGG | - | chr4_1:25575969-25575988 | Msa0541610:CDS | 50.0% | |
| TTCTCCCTTCGAAACAGTCC+GGG | + | chr4_1:25575976-25575995 | None:intergenic | 50.0% | |
| GGTGGACAGGGTCATTCATT+AGG | - | chr4_1:25576459-25576478 | Msa0541610:CDS | 50.0% | |
| CTAGGGATGTCATACCCAGT+AGG | - | chr4_1:25577029-25577048 | Msa0541610:intron | 50.0% | |
| TATATATGGTCCTGCGGGTG+GGG | + | chr4_1:25577423-25577442 | None:intergenic | 50.0% | |
| CATATATATGGTCCTGCGGG+TGG | + | chr4_1:25577425-25577444 | None:intergenic | 50.0% | |
| GTCCATTATGGCTGAAAGGC+AGG | - | chr4_1:25578352-25578371 | Msa0541610:intron | 50.0% | |
| TGCCTGCCTTTCAGCCATAA+TGG | + | chr4_1:25578357-25578376 | None:intergenic | 50.0% | |
| ! | GGATGAAGCACTTGCTCAGA+GGG | - | chr4_1:25578460-25578479 | Msa0541610:intron | 50.0% |
| CTCTTGCAGCCCTTCAAAGT+CGG | - | chr4_1:25578510-25578529 | Msa0541610:intron | 50.0% | |
| TGAAGAATGGTGCATCCGCT+TGG | + | chr4_1:25578582-25578601 | None:intergenic | 50.0% | |
| GAATGGGATAGGCAGGATGT+TGG | - | chr4_1:25578818-25578837 | Msa0541610:intron | 50.0% | |
| CTCCAGTACACGTGCAAACT+GGG | + | chr4_1:25578883-25578902 | None:intergenic | 50.0% | |
| ACTCCAGTACACGTGCAAAC+TGG | + | chr4_1:25578884-25578903 | None:intergenic | 50.0% | |
| CCACGACAGTGCTACAAATG+GGG | - | chr4_1:25578905-25578924 | Msa0541610:intron | 50.0% | |
| CACGACAGTGCTACAAATGG+GGG | - | chr4_1:25578906-25578925 | Msa0541610:intron | 50.0% | |
| CAGTGCTACAAATGGGGGAA+TGG | - | chr4_1:25578911-25578930 | Msa0541610:intron | 50.0% | |
| TGCTACAAATGGGGGAATGG+TGG | - | chr4_1:25578914-25578933 | Msa0541610:intron | 50.0% | |
| ! | ACAAATGGGGGAATGGTGGA+TGG | - | chr4_1:25578918-25578937 | Msa0541610:intron | 50.0% |
| ATTGGAGGGCGGAAAATGAG+CGG | - | chr4_1:25579013-25579032 | Msa0541610:intron | 50.0% | |
| AAGGATTACTGGGCCAGACA+TGG | - | chr4_1:25579106-25579125 | Msa0541610:intron | 50.0% | |
| ! | ATATCGTGCTGACCAAGGCA+TGG | + | chr4_1:25579230-25579249 | None:intergenic | 50.0% |
| ! | CAAGCATATCGTGCTGACCA+AGG | + | chr4_1:25579235-25579254 | None:intergenic | 50.0% |
| TGCTTGAGTTTAGCGCATGC+AGG | - | chr4_1:25579249-25579268 | Msa0541610:intron | 50.0% | |
| ATGACACGGGTGAGGAAGGA+AGG | - | chr4_1:25575304-25575323 | Msa0541610:three_prime_UTR | 55.0% | |
| ! | CCACTTACTTAGGGTGCTCG+AGG | + | chr4_1:25575940-25575959 | None:intergenic | 55.0% |
| CCTCGAGCACCCTAAGTAAG+TGG | - | chr4_1:25575937-25575956 | Msa0541610:CDS | 55.0% | |
| ATATATGGTCCTGCGGGTGG+GGG | + | chr4_1:25577422-25577441 | None:intergenic | 55.0% | |
| ! | CTACAGAGGAGCACATTCCC+TGG | - | chr4_1:25578170-25578189 | Msa0541610:intron | 55.0% |
| TGCTTCATCCCTCTGCCGAA+GGG | + | chr4_1:25578450-25578469 | None:intergenic | 55.0% | |
| ! | GGGATGAAGCACTTGCTCAG+AGG | - | chr4_1:25578459-25578478 | Msa0541610:intron | 55.0% |
| GTACACGTGCAAACTGGGAC+AGG | + | chr4_1:25578878-25578897 | None:intergenic | 55.0% | |
| GTCCCAGTTTGCACGTGTAC+TGG | - | chr4_1:25578878-25578897 | Msa0541610:intron | 55.0% | |
| CCCCATTTGTAGCACTGTCG+TGG | + | chr4_1:25578908-25578927 | None:intergenic | 55.0% | |
| TTGTTCGGGAGCTGTGGTAG+TGG | + | chr4_1:25578980-25578999 | None:intergenic | 55.0% | |
| ATGCGAGCATGGCGCTTGTT+CGG | + | chr4_1:25578995-25579014 | None:intergenic | 55.0% | |
| AACAAGCGCCATGCTCGCAT+TGG | - | chr4_1:25578995-25579014 | Msa0541610:intron | 55.0% | |
| TATATGGTCCTGCGGGTGGG+GGG | + | chr4_1:25577421-25577440 | None:intergenic | 60.0% | |
| CTGCTCGAGACGTAGCCCTT+CGG | - | chr4_1:25578432-25578451 | Msa0541610:intron | 60.0% | |
| AGACGTAGCCCTTCGGCAGA+GGG | - | chr4_1:25578439-25578458 | Msa0541610:intron | 60.0% | |
| GTGCTTCATCCCTCTGCCGA+AGG | + | chr4_1:25578451-25578470 | None:intergenic | 60.0% | |
| TGCGAGCATGGCGCTTGTTC+GGG | + | chr4_1:25578994-25579013 | None:intergenic | 60.0% | |
| AAGCGCCATGCTCGCATTGG+AGG | - | chr4_1:25578998-25579017 | Msa0541610:intron | 60.0% | |
| AGCGCCATGCTCGCATTGGA+GGG | - | chr4_1:25578999-25579018 | Msa0541610:intron | 60.0% | |
| GGCTACGTCTCGAGCAGCCA+GGG | + | chr4_1:25578429-25578448 | None:intergenic | 65.0% | |
| GAGACGTAGCCCTTCGGCAG+AGG | - | chr4_1:25578438-25578457 | Msa0541610:intron | 65.0% | |
| TGGCGCTTGTTCGGGAGCTG+TGG | + | chr4_1:25578986-25579005 | None:intergenic | 65.0% | |
| GCCATGCTCGCATTGGAGGG+CGG | - | chr4_1:25579002-25579021 | Msa0541610:intron | 65.0% | |
| TCCGCCCTCCAATGCGAGCA+TGG | + | chr4_1:25579006-25579025 | None:intergenic | 65.0% | |
| AACACAAGCCCCCCACCCGC+AGG | - | chr4_1:25577410-25577429 | Msa0541610:intron | 70.0% | |
| GGGCTACGTCTCGAGCAGCC+AGG | + | chr4_1:25578430-25578449 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 25575297 | 25579531 | 25575297 | ID=Msa0541610;Name=Msa0541610 |
| chr4_1 | mRNA | 25575297 | 25579531 | 25575297 | ID=Msa0541610-mRNA-1;Parent=Msa0541610;Name=Msa0541610-mRNA-1;_AED=0.16;_eAED=0.16;_QI=193|1|1|1|0.5|0.33|3|375|312 |
| chr4_1 | exon | 25575297 | 25576541 | 25575297 | ID=Msa0541610-mRNA-1:exon:6888;Parent=Msa0541610-mRNA-1 |
| chr4_1 | exon | 25576637 | 25576800 | 25576637 | ID=Msa0541610-mRNA-1:exon:6887;Parent=Msa0541610-mRNA-1 |
| chr4_1 | exon | 25579434 | 25579531 | 25579434 | ID=Msa0541610-mRNA-1:exon:6886;Parent=Msa0541610-mRNA-1 |
| chr4_1 | five_prime_UTR | 25579434 | 25579531 | 25579434 | ID=Msa0541610-mRNA-1:five_prime_utr;Parent=Msa0541610-mRNA-1 |
| chr4_1 | five_prime_UTR | 25576706 | 25576800 | 25576706 | ID=Msa0541610-mRNA-1:five_prime_utr;Parent=Msa0541610-mRNA-1 |
| chr4_1 | CDS | 25576637 | 25576705 | 25576637 | ID=Msa0541610-mRNA-1:cds;Parent=Msa0541610-mRNA-1 |
| chr4_1 | CDS | 25575672 | 25576541 | 25575672 | ID=Msa0541610-mRNA-1:cds;Parent=Msa0541610-mRNA-1 |
| chr4_1 | three_prime_UTR | 25575297 | 25575671 | 25575297 | ID=Msa0541610-mRNA-1:three_prime_utr;Parent=Msa0541610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
