Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570300 | XP_039685256.1 | 97.977 | 346 | 7 | 0 | 1 | 346 | 1 | 346 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570300 | sp|A2RVJ8|HIT4_ARATH | 66.087 | 345 | 106 | 2 | 2 | 346 | 101 | 434 | 1.79e-165 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570300 | A0A396GRK1 | 97.977 | 346 | 7 | 0 | 1 | 346 | 1 | 346 | 0.0 | 696 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0541610 | Msa0570300 | 0.803876 | 2.827597e-49 | -8.615850e-47 |
| Msa0541680 | Msa0570300 | 0.820825 | 5.590552e-53 | -8.615850e-47 |
| Msa0570150 | Msa0570300 | 0.809437 | 1.893469e-50 | -8.615850e-47 |
| Msa0570210 | Msa0570300 | 0.817902 | 2.591494e-52 | -8.615850e-47 |
| Msa0570280 | Msa0570300 | 0.835860 | 1.311924e-56 | -8.615850e-47 |
| Msa0570300 | Msa0570360 | 0.810469 | 1.135225e-50 | -8.615850e-47 |
| Msa0570300 | Msa0570370 | 0.849335 | 3.454607e-60 | -8.615850e-47 |
| Msa0570300 | Msa0570380 | 0.870654 | 1.239427e-66 | -8.615850e-47 |
| Msa0570300 | Msa0570410 | 0.841293 | 5.187179e-58 | -8.615850e-47 |
| Msa0570300 | Msa0570720 | 0.804899 | 1.731062e-49 | -8.615850e-47 |
| Msa0570300 | Msa0570730 | 0.801764 | 7.719374e-49 | -8.615850e-47 |
| Msa0570300 | Msa0570800 | 0.870244 | 1.688776e-66 | -8.615850e-47 |
| Msa0570300 | Msa0570910 | 0.832718 | 8.055922e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570300 | MtrunA17_Chr8g0382951 | 97.977 | 346 | 7 | 0 | 1 | 346 | 1 | 346 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570300 | AT5G10010.1 | 66.087 | 345 | 106 | 2 | 2 | 346 | 101 | 434 | 1.82e-166 | 471 |
| Msa0570300 | AT5G64910.4 | 60.856 | 327 | 124 | 4 | 23 | 346 | 149 | 474 | 2.70e-125 | 368 |
| Msa0570300 | AT5G64910.3 | 60.856 | 327 | 124 | 4 | 23 | 346 | 149 | 474 | 2.70e-125 | 368 |
| Msa0570300 | AT5G64910.5 | 60.856 | 327 | 124 | 4 | 23 | 346 | 149 | 474 | 2.70e-125 | 368 |
| Msa0570300 | AT5G64910.1 | 59.355 | 310 | 123 | 3 | 23 | 330 | 149 | 457 | 6.63e-114 | 339 |
| Msa0570300 | AT5G64910.2 | 59.032 | 310 | 121 | 4 | 23 | 330 | 149 | 454 | 2.48e-111 | 333 |
Find 115 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCACCATCTGATAAAAT+TGG | 0.157161 | 4_1:+72408336 | Msa0570300:CDS |
| TACCTATGTAATTGTCTAAA+AGG | 0.186133 | 4_1:+72411029 | Msa0570300:three_prime_UTR |
| TCAAATTCATCTTCCTTAAA+TGG | 0.186723 | 4_1:-72409715 | None:intergenic |
| CTTCGAAGATAAGCGTAATT+TGG | 0.193911 | 4_1:+72407008 | Msa0570300:CDS |
| GGATAATTGAGACGTGTTTC+TGG | 0.202699 | 4_1:+72411108 | Msa0570300:three_prime_UTR |
| CGCTTATCTTCGAAGTATTC+AGG | 0.208544 | 4_1:-72407000 | None:intergenic |
| GGAAAGAAGGTTTACCTATT+TGG | 0.212336 | 4_1:+72407690 | Msa0570300:CDS |
| TCCTATGAAGCAAATGAAAA+TGG | 0.241093 | 4_1:+72408395 | Msa0570300:CDS |
| AGATTTCTATCAGCCATTTA+AGG | 0.268276 | 4_1:+72409702 | Msa0570300:intron |
| CTCAGAAATTCTCTACAAAA+TGG | 0.295037 | 4_1:-72411134 | None:intergenic |
| TCTTTAATCTATCCAACTTC+AGG | 0.314948 | 4_1:-72409529 | None:intergenic |
| TAAATCATAATTACCGGCTT+TGG | 0.319009 | 4_1:-72409775 | None:intergenic |
| GGCTCAACTGGATATATTAT+CGG | 0.334796 | 4_1:-72409754 | None:intergenic |
| GAAGTATTCAGGTTCGGATT+GGG | 0.348830 | 4_1:-72406989 | None:intergenic |
| GAAGCTACAGGTTGGGAATC+AGG | 0.356441 | 4_1:-72406904 | None:intergenic |
| TGCAGTCTCCATTCATAAAC+AGG | 0.360207 | 4_1:+72410873 | Msa0570300:intron |
| AATATCTTTACTTACCTTGA+AGG | 0.363364 | 4_1:-72410224 | None:intergenic |
| ATTACCGGCTTTGGCTCAAC+TGG | 0.372230 | 4_1:-72409766 | None:intergenic |
| GAAAATTGCCATTGTTGTCT+TGG | 0.379458 | 4_1:-72410932 | None:intergenic |
| CATAGGTAAAGAAAATTTGA+TGG | 0.380350 | 4_1:-72411014 | None:intergenic |
| CACCAAAAGTACCTCTCTAT+TGG | 0.385186 | 4_1:-72410367 | None:intergenic |
| TTCCACCATCTGATAAAATT+GGG | 0.396244 | 4_1:+72408337 | Msa0570300:CDS |
| ATACATTTAATTTAATTTGA+AGG | 0.398112 | 4_1:-72411223 | None:intergenic |
| ATGGTGTTTGCGTTCGAATT+CGG | 0.399450 | 4_1:-72406829 | None:intergenic |
| GTTGCCGTTTGCAGCTCAAC+TGG | 0.399941 | 4_1:+72407823 | Msa0570300:intron |
| CCGTAATACCTGTTTATGAA+TGG | 0.401773 | 4_1:-72410881 | None:intergenic |
| TACGCTCGGTGCAACCAAAT+AGG | 0.402505 | 4_1:-72407704 | None:intergenic |
| CGAAGTATTCAGGTTCGGAT+TGG | 0.407077 | 4_1:-72406990 | None:intergenic |
| ATGGAGCACCAAGAGGTTGC+CGG | 0.407146 | 4_1:-72410995 | None:intergenic |
| ACCACCTACTTCACTTATCT+AGG | 0.415880 | 4_1:-72411083 | None:intergenic |
| ATTTGTCAGGGAAAAGGTTC+GGG | 0.419026 | 4_1:+72410332 | Msa0570300:CDS |
| AGGTTCGGATTGGGGTTTAG+AGG | 0.423673 | 4_1:-72406980 | None:intergenic |
| ATCTTCGAAGTATTCAGGTT+CGG | 0.427533 | 4_1:-72406995 | None:intergenic |
| TTGGGAATCTTCGGTGTGCT+TGG | 0.428739 | 4_1:-72406881 | None:intergenic |
| ACCTGATGTGTCAGGTGTTA+AGG | 0.432564 | 4_1:+72410567 | Msa0570300:CDS |
| GGAATCAGGTTGGGAATCTT+CGG | 0.433336 | 4_1:-72406890 | None:intergenic |
| GAAGAGGGTGGCCTCTTGTA+TGG | 0.433536 | 4_1:+72407669 | Msa0570300:CDS |
| GAACTTACCGCCACAACAAC+AGG | 0.436390 | 4_1:-72407881 | None:intergenic |
| TTGAGATGAAGCTACAGGTT+GGG | 0.440410 | 4_1:-72406911 | None:intergenic |
| TCTTTCTTTAGGAATTTGTC+AGG | 0.440455 | 4_1:+72410319 | Msa0570300:intron |
| ACCTATGTAATTGTCTAAAA+GGG | 0.440773 | 4_1:+72411030 | Msa0570300:three_prime_UTR |
| AGGTCTTCTGTGAATTTGAT+TGG | 0.443236 | 4_1:+72409907 | Msa0570300:intron |
| GAGGCGTTTAGCTTTAGGTT+TGG | 0.448003 | 4_1:-72406953 | None:intergenic |
| AATTTGTCAGGGAAAAGGTT+CGG | 0.448510 | 4_1:+72410331 | Msa0570300:CDS |
| TTAGGAATTTGTCAGGGAAA+AGG | 0.455764 | 4_1:+72410326 | Msa0570300:intron |
| AACTTCATATAGAACAAATA+CGG | 0.461814 | 4_1:-72410969 | None:intergenic |
| AGCACCTTTCCTCATTGTGA+TGG | 0.464290 | 4_1:-72406848 | None:intergenic |
| TTTGATACACAGCATCCAAT+TGG | 0.469259 | 4_1:-72407503 | None:intergenic |
| TGCTTTGAAACACCTGAAGT+TGG | 0.469556 | 4_1:+72409517 | Msa0570300:CDS |
| CTGGGTTCCGTACATTCCTC+TGG | 0.477758 | 4_1:+72408419 | Msa0570300:CDS |
| CCATTCATAAACAGGTATTA+CGG | 0.479214 | 4_1:+72410881 | Msa0570300:CDS |
| GTTTACTTATAAACTTATTG+AGG | 0.479625 | 4_1:+72410171 | Msa0570300:CDS |
| TGAATCGAAGGCGCTAGATC+CGG | 0.485544 | 4_1:-72406748 | None:intergenic |
| TGGCCTCTTGTATGGAAAGA+AGG | 0.486407 | 4_1:+72407677 | Msa0570300:CDS |
| GGTCTTCTGTGAATTTGATT+GGG | 0.487595 | 4_1:+72409908 | Msa0570300:intron |
| GCTATGCCAGTGGGACCAAT+TGG | 0.487873 | 4_1:+72407488 | Msa0570300:intron |
| TGAAGCAAATGAAAATGGAC+TGG | 0.492057 | 4_1:+72408400 | Msa0570300:CDS |
| TACAGGTTGGGAATCAGGTT+GGG | 0.492936 | 4_1:-72406899 | None:intergenic |
| GCTCAACTGGTCATGCATCA+AGG | 0.495363 | 4_1:+72407836 | Msa0570300:intron |
| TTTACTTATAAACTTATTGA+GGG | 0.500654 | 4_1:+72410172 | Msa0570300:CDS |
| ACCTGACACATCAGGTGCAT+CGG | 0.502548 | 4_1:-72410560 | None:intergenic |
| CTCAACTGGTCATGCATCAA+GGG | 0.504378 | 4_1:+72407837 | Msa0570300:CDS |
| CCTGACACATCAGGTGCATC+GGG | 0.504797 | 4_1:-72410559 | None:intergenic |
| GGTGCATCGGGAGATGGAAC+GGG | 0.505043 | 4_1:-72410547 | None:intergenic |
| TCTTGCGTTGCACCCAAAGA+AGG | 0.511738 | 4_1:+72408621 | Msa0570300:CDS |
| ACCTTAACACCTGACACATC+AGG | 0.515689 | 4_1:-72410568 | None:intergenic |
| TTCCGCACTCATTTCAGCAA+TGG | 0.517076 | 4_1:-72410482 | None:intergenic |
| AAGTATTCAGGTTCGGATTG+GGG | 0.518136 | 4_1:-72406988 | None:intergenic |
| CCCGATGCACCTGATGTGTC+AGG | 0.518892 | 4_1:+72410559 | Msa0570300:CDS |
| CAACAAACCTCAGTGCCGAC+AGG | 0.520920 | 4_1:-72407399 | None:intergenic |
| AAGTTTACCCGGCAACCTCT+TGG | 0.530861 | 4_1:+72410987 | Msa0570300:three_prime_UTR |
| GAGACTTCAATCTATCAACT+TGG | 0.537178 | 4_1:-72408589 | None:intergenic |
| AAATACGGGCAAAACAAGCC+AGG | 0.542281 | 4_1:-72410954 | None:intergenic |
| ACATCAGGTGCATCGGGAGA+TGG | 0.546211 | 4_1:-72410553 | None:intergenic |
| AGGTGCATCGGGAGATGGAA+CGG | 0.548169 | 4_1:-72410548 | None:intergenic |
| TGGAGCACCAAGAGGTTGCC+GGG | 0.549875 | 4_1:-72410994 | None:intergenic |
| ACTTCATATAGAACAAATAC+GGG | 0.555045 | 4_1:-72410968 | None:intergenic |
| GATGCATACCGTTGCTCCAG+AGG | 0.557361 | 4_1:-72408435 | None:intergenic |
| CTTGAGATGAAGCTACAGGT+TGG | 0.557653 | 4_1:-72406912 | None:intergenic |
| CTACAGGTTGGGAATCAGGT+TGG | 0.563728 | 4_1:-72406900 | None:intergenic |
| AAATCCTAGATAAGTGAAGT+AGG | 0.564933 | 4_1:+72411079 | Msa0570300:three_prime_UTR |
| TTTCAGAATGCATTCGAAGA+GGG | 0.581363 | 4_1:+72407654 | Msa0570300:intron |
| CGTTGCTCCAGAGGAATGTA+CGG | 0.585597 | 4_1:-72408426 | None:intergenic |
| TTGGGAATTAGATGAACTTG+AGG | 0.587442 | 4_1:+72409926 | Msa0570300:CDS |
| CGTACATTCCTCTGGAGCAA+CGG | 0.588597 | 4_1:+72408427 | Msa0570300:CDS |
| AAACCTTCTTTCCATACAAG+AGG | 0.588752 | 4_1:-72407680 | None:intergenic |
| TCTTGTAGGCAAGGGAAGCA+CGG | 0.590773 | 4_1:+72410452 | Msa0570300:intron |
| GAAGCAAATGAAAATGGACT+GGG | 0.591547 | 4_1:+72408401 | Msa0570300:CDS |
| TACTTATAAACTTATTGAGG+GGG | 0.592999 | 4_1:+72410174 | Msa0570300:CDS |
| ATATCCAGTTGAGCCAAAGC+CGG | 0.594956 | 4_1:+72409762 | Msa0570300:CDS |
| CATAAACAGGTATTACGGAA+AGG | 0.597848 | 4_1:+72410886 | Msa0570300:CDS |
| TGTTCTATATGAAGTTTACC+CGG | 0.600121 | 4_1:+72410976 | Msa0570300:three_prime_UTR |
| GATTAGCTCCAAGACAACAA+TGG | 0.606826 | 4_1:+72410924 | Msa0570300:exon |
| TTACTTATAAACTTATTGAG+GGG | 0.609061 | 4_1:+72410173 | Msa0570300:CDS |
| AGATGAATTTGAACAAAGCA+CGG | 0.612836 | 4_1:+72409726 | Msa0570300:CDS |
| CAGAATGCATTCGAAGAGGG+TGG | 0.615896 | 4_1:+72407657 | Msa0570300:intron |
| CTTTCTTTAGGAATTTGTCA+GGG | 0.618977 | 4_1:+72410320 | Msa0570300:intron |
| TGGCTCGAAACATTCCCTGT+CGG | 0.627381 | 4_1:+72407384 | Msa0570300:CDS |
| GTATTACGGAAAGGCTCATG+AGG | 0.629234 | 4_1:+72410895 | Msa0570300:CDS |
| GATAAGTGAAGTAGGTGGTG+AGG | 0.629560 | 4_1:+72411087 | Msa0570300:three_prime_UTR |
| CTGCATACCTGTTGTTGTGG+CGG | 0.629599 | 4_1:+72407874 | Msa0570300:CDS |
| AACACCATCACAATGAGGAA+AGG | 0.636181 | 4_1:+72406844 | Msa0570300:exon |
| TGTCTGCATACCTGTTGTTG+TGG | 0.638247 | 4_1:+72407871 | Msa0570300:CDS |
| AGCAAAGAAAGCCAATAGAG+AGG | 0.639340 | 4_1:+72410356 | Msa0570300:CDS |
| GATTAACTCAGTTCAGAGAG+AGG | 0.642388 | 4_1:+72408359 | Msa0570300:CDS |
| ATGCTGTGTATCAAATCAAG+TGG | 0.652338 | 4_1:+72407511 | Msa0570300:CDS |
| AACAAACCTCAGTGCCGACA+GGG | 0.654059 | 4_1:-72407398 | None:intergenic |
| TCAACTGGTCATGCATCAAG+GGG | 0.656478 | 4_1:+72407838 | Msa0570300:CDS |
| GTTTCAGAATGCATTCGAAG+AGG | 0.661105 | 4_1:+72407653 | Msa0570300:intron |
| AAATTTGATGGAGCACCAAG+AGG | 0.663966 | 4_1:-72411002 | None:intergenic |
| AGCCATTGCTGAAATGAGTG+CGG | 0.676262 | 4_1:+72410480 | Msa0570300:CDS |
| ACGCAAACACCATCACAATG+AGG | 0.678492 | 4_1:+72406839 | Msa0570300:exon |
| AACATTCCCTGTCGGCACTG+AGG | 0.681880 | 4_1:+72407392 | Msa0570300:CDS |
| TCCTAGATAAGTGAAGTAGG+TGG | 0.691607 | 4_1:+72411082 | Msa0570300:three_prime_UTR |
| TGAATTTGAACAAAGCACGG+AGG | 0.770299 | 4_1:+72409729 | Msa0570300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTTAATTTTGAATT+TGG | + | chr4_1:72407115-72407134 | Msa0570300:intron | 10.0% |
| !! | TTTCGTTTATATAATTAATT+AGG | + | chr4_1:72407272-72407291 | Msa0570300:intron | 10.0% |
| !!! | AATTGTTTTAAATTTTTTAG+TGG | + | chr4_1:72408499-72408518 | Msa0570300:intron | 10.0% |
| !! | TTAAATTATTAAATATGCAT+TGG | + | chr4_1:72408722-72408741 | Msa0570300:intron | 10.0% |
| !! | AACAACAAAAAATAAATAAA+CGG | - | chr4_1:72409390-72409409 | None:intergenic | 10.0% |
| !!! | AAATTTTAAATCATAATTAC+CGG | - | chr4_1:72409784-72409803 | None:intergenic | 10.0% |
| !!! | ATACATTTAATTTAATTTGA+AGG | - | chr4_1:72411226-72411245 | None:intergenic | 10.0% |
| !! | TTAATATTATTAAGGAGAAA+CGG | + | chr4_1:72407233-72407252 | Msa0570300:intron | 15.0% |
| !! | AAAAAATACTGTAATTAGTT+TGG | - | chr4_1:72407945-72407964 | None:intergenic | 15.0% |
| !! | AATGAACTAATAAACAAATT+AGG | - | chr4_1:72408460-72408479 | None:intergenic | 15.0% |
| !!! | AATTTAAAACAATTTACCAA+AGG | - | chr4_1:72408493-72408512 | None:intergenic | 15.0% |
| !! | TTTACTTATAAACTTATTGA+GGG | + | chr4_1:72410172-72410191 | Msa0570300:CDS | 15.0% |
| !! | AATAAACTCAATATTATCAT+CGG | - | chr4_1:72410767-72410786 | None:intergenic | 15.0% |
| !!! | GGAAAAAATAATACTTTTAT+GGG | - | chr4_1:72411205-72411224 | None:intergenic | 15.0% |
| !!! | AGGAAAAAATAATACTTTTA+TGG | - | chr4_1:72411206-72411225 | None:intergenic | 15.0% |
| !! | AGAACTATGTAAGATAAATA+GGG | - | chr4_1:72407793-72407812 | None:intergenic | 20.0% |
| !! | AAGAACTATGTAAGATAAAT+AGG | - | chr4_1:72407794-72407813 | None:intergenic | 20.0% |
| !! | AGTAAAAAAATACCTTCTTT+GGG | - | chr4_1:72408636-72408655 | None:intergenic | 20.0% |
| !! | AAGTAAAAAAATACCTTCTT+TGG | - | chr4_1:72408637-72408656 | None:intergenic | 20.0% |
| !!! | ATATGTTCAAATTTTGTATG+AGG | + | chr4_1:72409608-72409627 | Msa0570300:intron | 20.0% |
| !!! | TGATTTAAAATTTATCCGAT+AGG | + | chr4_1:72409791-72409810 | Msa0570300:intron | 20.0% |
| !! | CTAGGAAATATTTAATTATC+TGG | + | chr4_1:72410032-72410051 | Msa0570300:intron | 20.0% |
| !! | AATATTTAATTATCTGGTGT+AGG | + | chr4_1:72410038-72410057 | Msa0570300:intron | 20.0% |
| !! | AATATACTAATAATGGTCAA+AGG | + | chr4_1:72410114-72410133 | Msa0570300:intron | 20.0% |
| !! | GTTTACTTATAAACTTATTG+AGG | + | chr4_1:72410171-72410190 | Msa0570300:CDS | 20.0% |
| !! | TTACTTATAAACTTATTGAG+GGG | + | chr4_1:72410173-72410192 | Msa0570300:CDS | 20.0% |
| !! | AACTTCATATAGAACAAATA+CGG | - | chr4_1:72410972-72410991 | None:intergenic | 20.0% |
| ! | GAACTATGTAAGATAAATAG+GGG | - | chr4_1:72407792-72407811 | None:intergenic | 25.0% |
| ! | ACCAAAACTATTTATCCTTT+GGG | - | chr4_1:72408063-72408082 | None:intergenic | 25.0% |
| ! | AACCAAAACTATTTATCCTT+TGG | - | chr4_1:72408064-72408083 | None:intergenic | 25.0% |
| ! | TCCTAAATACTTAGTTGTTA+AGG | + | chr4_1:72408182-72408201 | Msa0570300:intron | 25.0% |
| ! | ACCTTAACAACTAAGTATTT+AGG | - | chr4_1:72408186-72408205 | None:intergenic | 25.0% |
| !! | AGATATCAGTTTTACTTACT+TGG | + | chr4_1:72408215-72408234 | Msa0570300:intron | 25.0% |
| !! | TTAATCCCAATTTTATCAGA+TGG | - | chr4_1:72408345-72408364 | None:intergenic | 25.0% |
| !!! | TTCATTTTTAGTTGTTCCTT+TGG | + | chr4_1:72408474-72408493 | Msa0570300:intron | 25.0% |
| !!! | AAATTTTTTAGTGGTTCCTT+TGG | + | chr4_1:72408508-72408527 | Msa0570300:intron | 25.0% |
| ! | ATTACTAAGGAATTTACCAA+AGG | - | chr4_1:72408527-72408546 | None:intergenic | 25.0% |
| !! | CAACTTCCTCATTTAATTTA+TGG | + | chr4_1:72408551-72408570 | Msa0570300:intron | 25.0% |
| ! | ACTAACATTATTGACAGTAA+GGG | - | chr4_1:72408670-72408689 | None:intergenic | 25.0% |
| ! | TACTAACATTATTGACAGTA+AGG | - | chr4_1:72408671-72408690 | None:intergenic | 25.0% |
| !!! | TAATGATAATTTTTGGGTAC+AGG | - | chr4_1:72408772-72408791 | None:intergenic | 25.0% |
| ! | ATGCATAATAATACATGTGT+TGG | + | chr4_1:72408860-72408879 | Msa0570300:intron | 25.0% |
| ! | TGCATAATAATACATGTGTT+GGG | + | chr4_1:72408861-72408880 | Msa0570300:intron | 25.0% |
| ! | CTTTCATTTGTATATCTCTA+AGG | + | chr4_1:72408947-72408966 | Msa0570300:intron | 25.0% |
| ! | TGTACTGAAGAGTAAAAATA+GGG | - | chr4_1:72409023-72409042 | None:intergenic | 25.0% |
| !! | CTATATACTTTTACAATTGC+TGG | - | chr4_1:72409324-72409343 | None:intergenic | 25.0% |
| ! | TCACATATTATAACAAGGTT+AGG | - | chr4_1:72409489-72409508 | None:intergenic | 25.0% |
| ! | CTGTATCACATATTATAACA+AGG | - | chr4_1:72409494-72409513 | None:intergenic | 25.0% |
| !! | CTTGTTATAATATGTGATAC+AGG | + | chr4_1:72409492-72409511 | Msa0570300:intron | 25.0% |
| ! | TCAAATTCATCTTCCTTAAA+TGG | - | chr4_1:72409718-72409737 | None:intergenic | 25.0% |
| !!! | GGATATTTTTTCTTACAGTA+CGG | + | chr4_1:72409837-72409856 | Msa0570300:intron | 25.0% |
| !!! | GATATTTTTTCTTACAGTAC+GGG | + | chr4_1:72409838-72409857 | Msa0570300:intron | 25.0% |
| ! | GTGACATAGAAAACAAAATA+TGG | - | chr4_1:72409869-72409888 | None:intergenic | 25.0% |
| ! | CCATTATTAGTATATTTCTC+TGG | - | chr4_1:72410110-72410129 | None:intergenic | 25.0% |
| ! | CCAGAGAAATATACTAATAA+TGG | + | chr4_1:72410107-72410126 | Msa0570300:intron | 25.0% |
| ! | TACTTATAAACTTATTGAGG+GGG | + | chr4_1:72410174-72410193 | Msa0570300:CDS | 25.0% |
| ! | AATATCTTTACTTACCTTGA+AGG | - | chr4_1:72410227-72410246 | None:intergenic | 25.0% |
| ! | CTTTCTTTCTTTCTTTCTTT+AGG | + | chr4_1:72410308-72410327 | Msa0570300:intron | 25.0% |
| ! | ACATAATCAACAGAAATTCA+GGG | - | chr4_1:72410799-72410818 | None:intergenic | 25.0% |
| ! | AACATAATCAACAGAAATTC+AGG | - | chr4_1:72410800-72410819 | None:intergenic | 25.0% |
| ! | ACTTCATATAGAACAAATAC+GGG | - | chr4_1:72410971-72410990 | None:intergenic | 25.0% |
| ! | CATAGGTAAAGAAAATTTGA+TGG | - | chr4_1:72411017-72411036 | None:intergenic | 25.0% |
| ! | TACCTATGTAATTGTCTAAA+AGG | + | chr4_1:72411029-72411048 | Msa0570300:three_prime_UTR | 25.0% |
| ! | ACCTATGTAATTGTCTAAAA+GGG | + | chr4_1:72411030-72411049 | Msa0570300:three_prime_UTR | 25.0% |
| !!! | AGAAAAGATAGGGTTTTGAA+GGG | - | chr4_1:72406776-72406795 | None:intergenic | 30.0% |
| ACAATAGAGATATCTCAGTT+AGG | - | chr4_1:72407330-72407349 | None:intergenic | 30.0% | |
| !!! | GCTGTTGATTTCAATTTTGT+AGG | + | chr4_1:72407353-72407372 | Msa0570300:intron | 30.0% |
| ! | CAATTTTGTAGGAAGATTTG+TGG | + | chr4_1:72407364-72407383 | Msa0570300:intron | 30.0% |
| TAACCTAGAAGTGAGTATTA+GGG | + | chr4_1:72407542-72407561 | Msa0570300:intron | 30.0% | |
| AAACATAAACTACTTACGCT+CGG | - | chr4_1:72407721-72407740 | None:intergenic | 30.0% | |
| ATGTAAGATAAATAGGGGAT+TGG | - | chr4_1:72407787-72407806 | None:intergenic | 30.0% | |
| AAACTATTTATCCTTTGGGT+GGG | - | chr4_1:72408059-72408078 | None:intergenic | 30.0% | |
| AAAACTATTTATCCTTTGGG+TGG | - | chr4_1:72408060-72408079 | None:intergenic | 30.0% | |
| ! | ACCCAAAGGATAAATAGTTT+TGG | + | chr4_1:72408059-72408078 | Msa0570300:intron | 30.0% |
| AGTTTGTATTTATCTCCTTG+CGG | + | chr4_1:72408125-72408144 | Msa0570300:intron | 30.0% | |
| ! | TTTCAACTCTTTTCTGTAAC+AGG | + | chr4_1:72408302-72408321 | Msa0570300:intron | 30.0% |
| !!! | ATTTTATCAGATGGTGGAAA+AGG | - | chr4_1:72408336-72408355 | None:intergenic | 30.0% |
| TTTCCACCATCTGATAAAAT+TGG | + | chr4_1:72408336-72408355 | Msa0570300:CDS | 30.0% | |
| TTCCACCATCTGATAAAATT+GGG | + | chr4_1:72408337-72408356 | Msa0570300:CDS | 30.0% | |
| TCCTATGAAGCAAATGAAAA+TGG | + | chr4_1:72408395-72408414 | Msa0570300:CDS | 30.0% | |
| ! | TCCATTTTCATTTGCTTCAT+AGG | - | chr4_1:72408399-72408418 | None:intergenic | 30.0% |
| TGGAAGCCATAAATTAAATG+AGG | - | chr4_1:72408560-72408579 | None:intergenic | 30.0% | |
| CTAACATTATTGACAGTAAG+GGG | - | chr4_1:72408669-72408688 | None:intergenic | 30.0% | |
| TATCATCATAGCAGTATTTC+AGG | - | chr4_1:72408824-72408843 | None:intergenic | 30.0% | |
| TGAAATACTGCTATGATGAT+AGG | + | chr4_1:72408823-72408842 | Msa0570300:intron | 30.0% | |
| ACTTGACTACATATAAGTGA+TGG | - | chr4_1:72408921-72408940 | None:intergenic | 30.0% | |
| GTGTACTGAAGAGTAAAAAT+AGG | - | chr4_1:72409024-72409043 | None:intergenic | 30.0% | |
| ! | TTCAGTACACACTTGTTAAA+TGG | + | chr4_1:72409034-72409053 | Msa0570300:intron | 30.0% |
| TGAATTGAAACCATGGTAAA+TGG | - | chr4_1:72409099-72409118 | None:intergenic | 30.0% | |
| ! | TCATTTTAAATAAACGAGCG+TGG | + | chr4_1:72409214-72409233 | Msa0570300:intron | 30.0% |
| AAAGTATATAGCCACCTATT+TGG | + | chr4_1:72409333-72409352 | Msa0570300:intron | 30.0% | |
| TCAAACTGCAAATACCAAAT+AGG | - | chr4_1:72409350-72409369 | None:intergenic | 30.0% | |
| !!! | TTTTTGTTGTTAGCATGCAA+AGG | + | chr4_1:72409399-72409418 | Msa0570300:intron | 30.0% |
| !! | TTCACAAATTTGCTACATCA+AGG | - | chr4_1:72409455-72409474 | None:intergenic | 30.0% |
| TCTTTAATCTATCCAACTTC+AGG | - | chr4_1:72409532-72409551 | None:intergenic | 30.0% | |
| AGATTTCTATCAGCCATTTA+AGG | + | chr4_1:72409702-72409721 | Msa0570300:intron | 30.0% | |
| AGATGAATTTGAACAAAGCA+CGG | + | chr4_1:72409726-72409745 | Msa0570300:CDS | 30.0% | |
| !! | TAAATCATAATTACCGGCTT+TGG | - | chr4_1:72409778-72409797 | None:intergenic | 30.0% |
| GTAGTCAGTAAAATAGTAAC+AGG | - | chr4_1:72410006-72410025 | None:intergenic | 30.0% | |
| TTAATTATCTGGTGTAGGAA+TGG | + | chr4_1:72410043-72410062 | Msa0570300:intron | 30.0% | |
| TTGTTTGTTTAATATCCTGC+AGG | + | chr4_1:72410147-72410166 | Msa0570300:intron | 30.0% | |
| ! | TCTTTCTTTAGGAATTTGTC+AGG | + | chr4_1:72410319-72410338 | Msa0570300:intron | 30.0% |
| ! | CTTTCTTTAGGAATTTGTCA+GGG | + | chr4_1:72410320-72410339 | Msa0570300:intron | 30.0% |
| ! | TAACCTTCTTTTTCTCTTGT+AGG | + | chr4_1:72410438-72410457 | Msa0570300:intron | 30.0% |
| TTCTTCTACCAAAAAGGAAA+AGG | - | chr4_1:72410620-72410639 | None:intergenic | 30.0% | |
| GTGAATTTCTTCTACCAAAA+AGG | - | chr4_1:72410626-72410645 | None:intergenic | 30.0% | |
| CCATTCATAAACAGGTATTA+CGG | + | chr4_1:72410881-72410900 | Msa0570300:CDS | 30.0% | |
| TGTTCTATATGAAGTTTACC+CGG | + | chr4_1:72410976-72410995 | Msa0570300:three_prime_UTR | 30.0% | |
| ! | TCCCTTTTAGACAATTACAT+AGG | - | chr4_1:72411034-72411053 | None:intergenic | 30.0% |
| AAATCCTAGATAAGTGAAGT+AGG | + | chr4_1:72411079-72411098 | Msa0570300:three_prime_UTR | 30.0% | |
| CTCAGAAATTCTCTACAAAA+TGG | - | chr4_1:72411137-72411156 | None:intergenic | 30.0% | |
| ! | TTTTATGGGAAAACTAAGAC+AGG | - | chr4_1:72411191-72411210 | None:intergenic | 30.0% |
| !!! | AAAAGATAGGGTTTTGAAGG+GGG | - | chr4_1:72406774-72406793 | None:intergenic | 35.0% |
| !!! | GAAAAGATAGGGTTTTGAAG+GGG | - | chr4_1:72406775-72406794 | None:intergenic | 35.0% |
| !! | GAGAAAAGATAGGGTTTTGA+AGG | - | chr4_1:72406777-72406796 | None:intergenic | 35.0% |
| AGAGAGAGAGAGAAAAGATA+GGG | - | chr4_1:72406786-72406805 | None:intergenic | 35.0% | |
| ! | TTTTCTTGAGATGAAGCTAC+AGG | - | chr4_1:72406919-72406938 | None:intergenic | 35.0% |
| ! | ATCTTCGAAGTATTCAGGTT+CGG | - | chr4_1:72406998-72407017 | None:intergenic | 35.0% |
| CTTCGAAGATAAGCGTAATT+TGG | + | chr4_1:72407008-72407027 | Msa0570300:CDS | 35.0% | |
| CTTCAGCATTAAAAGCTACA+CGG | - | chr4_1:72407167-72407186 | None:intergenic | 35.0% | |
| TTTGATACACAGCATCCAAT+TGG | - | chr4_1:72407506-72407525 | None:intergenic | 35.0% | |
| ATGCTGTGTATCAAATCAAG+TGG | + | chr4_1:72407511-72407530 | Msa0570300:CDS | 35.0% | |
| CTAACCTAGAAGTGAGTATT+AGG | + | chr4_1:72407541-72407560 | Msa0570300:intron | 35.0% | |
| GCTATTAACTTCACTCAAAC+AGG | - | chr4_1:72407586-72407605 | None:intergenic | 35.0% | |
| TTTCAGAATGCATTCGAAGA+GGG | + | chr4_1:72407654-72407673 | Msa0570300:intron | 35.0% | |
| AAACCTTCTTTCCATACAAG+AGG | - | chr4_1:72407683-72407702 | None:intergenic | 35.0% | |
| GGAAAGAAGGTTTACCTATT+TGG | + | chr4_1:72407690-72407709 | Msa0570300:CDS | 35.0% | |
| ! | TATGTTTTCATCGTTTTGCG+AGG | + | chr4_1:72407734-72407753 | Msa0570300:intron | 35.0% |
| !! | CGTATTTGGAACATGCATTT+TGG | - | chr4_1:72407996-72408015 | None:intergenic | 35.0% |
| GTGATCAGAAGAAACGTATT+TGG | - | chr4_1:72408010-72408029 | None:intergenic | 35.0% | |
| AACTATTTATCCTTTGGGTG+GGG | - | chr4_1:72408058-72408077 | None:intergenic | 35.0% | |
| GTTTGTATTTATCTCCTTGC+GGG | + | chr4_1:72408126-72408145 | Msa0570300:intron | 35.0% | |
| AAGTCTACACCAGATAAACA+AGG | - | chr4_1:72408153-72408172 | None:intergenic | 35.0% | |
| TTGTTTATCTGGTGTAGACT+TGG | + | chr4_1:72408152-72408171 | Msa0570300:intron | 35.0% | |
| ! | ATCCCAATTTTATCAGATGG+TGG | - | chr4_1:72408342-72408361 | None:intergenic | 35.0% |
| TGAAGCAAATGAAAATGGAC+TGG | + | chr4_1:72408400-72408419 | Msa0570300:CDS | 35.0% | |
| ! | GAAGCAAATGAAAATGGACT+GGG | + | chr4_1:72408401-72408420 | Msa0570300:CDS | 35.0% |
| AGGAAGTTGAGAGATTACTA+AGG | - | chr4_1:72408540-72408559 | None:intergenic | 35.0% | |
| GAGACTTCAATCTATCAACT+TGG | - | chr4_1:72408592-72408611 | None:intergenic | 35.0% | |
| TACTGCTATGATGATAGGTA+TGG | + | chr4_1:72408828-72408847 | Msa0570300:intron | 35.0% | |
| GAAAAGTGAAAATGCCTCTT+AGG | - | chr4_1:72408986-72409005 | None:intergenic | 35.0% | |
| !! | GAAAGCATTTCCATTTACCA+TGG | + | chr4_1:72409086-72409105 | Msa0570300:intron | 35.0% |
| ACCATGGTTTCAATTCATGA+TGG | + | chr4_1:72409102-72409121 | Msa0570300:intron | 35.0% | |
| TCCATCATGAATTGAAACCA+TGG | - | chr4_1:72409106-72409125 | None:intergenic | 35.0% | |
| GTTTCCTTCAGAGTAACATT+TGG | + | chr4_1:72409176-72409195 | Msa0570300:intron | 35.0% | |
| ACTTCCAAATGTTACTCTGA+AGG | - | chr4_1:72409183-72409202 | None:intergenic | 35.0% | |
| TTCAGAGTAACATTTGGAAG+TGG | + | chr4_1:72409182-72409201 | Msa0570300:intron | 35.0% | |
| ACATTTGGAAGTGGAACATA+TGG | + | chr4_1:72409191-72409210 | Msa0570300:intron | 35.0% | |
| AACTGCAAATACCAAATAGG+TGG | - | chr4_1:72409347-72409366 | None:intergenic | 35.0% | |
| CTAAAGCCAGAAAACTTACA+GGG | - | chr4_1:72409572-72409591 | None:intergenic | 35.0% | |
| ! | TCTAAAGCCAGAAAACTTAC+AGG | - | chr4_1:72409573-72409592 | None:intergenic | 35.0% |
| !! | GCTTTAGAATAGTTACTCAC+AGG | + | chr4_1:72409585-72409604 | Msa0570300:intron | 35.0% |
| ! | AAATTTTGTATGAGGCATGC+TGG | + | chr4_1:72409616-72409635 | Msa0570300:intron | 35.0% |
| AAATGGCTGATAGAAATCTG+TGG | - | chr4_1:72409701-72409720 | None:intergenic | 35.0% | |
| GGCTCAACTGGATATATTAT+CGG | - | chr4_1:72409757-72409776 | None:intergenic | 35.0% | |
| !! | CCAAAGAGTATCAATCCTAT+CGG | - | chr4_1:72409809-72409828 | None:intergenic | 35.0% |
| CGATAGGATTGATACTCTTT+GGG | + | chr4_1:72409807-72409826 | Msa0570300:intron | 35.0% | |
| !! | TTGATACTCTTTGGGTTGTT+TGG | + | chr4_1:72409815-72409834 | Msa0570300:intron | 35.0% |
| !! | TGATACTCTTTGGGTTGTTT+GGG | + | chr4_1:72409816-72409835 | Msa0570300:intron | 35.0% |
| AGGTCTTCTGTGAATTTGAT+TGG | + | chr4_1:72409907-72409926 | Msa0570300:intron | 35.0% | |
| GGTCTTCTGTGAATTTGATT+GGG | + | chr4_1:72409908-72409927 | Msa0570300:intron | 35.0% | |
| TTGGGAATTAGATGAACTTG+AGG | + | chr4_1:72409926-72409945 | Msa0570300:CDS | 35.0% | |
| CAACAACAAGGTTTAACAAC+AGG | - | chr4_1:72409969-72409988 | None:intergenic | 35.0% | |
| GGCAATTAAAGTCAACAACA+AGG | - | chr4_1:72409981-72410000 | None:intergenic | 35.0% | |
| TCAGTAAAATAGTAACAGGC+AGG | - | chr4_1:72410002-72410021 | None:intergenic | 35.0% | |
| ! | TTTACTGACTACTGAGTTCT+AGG | + | chr4_1:72410014-72410033 | Msa0570300:intron | 35.0% |
| GTTTATAAGTAAACTCCTGC+AGG | - | chr4_1:72410165-72410184 | None:intergenic | 35.0% | |
| !!! | TTACCTTGAAGGCATCTTTT+TGG | - | chr4_1:72410216-72410235 | None:intergenic | 35.0% |
| !! | CGTCTTTGAAGTAACAAGTT+AGG | + | chr4_1:72410274-72410293 | Msa0570300:intron | 35.0% |
| TTAGGAATTTGTCAGGGAAA+AGG | + | chr4_1:72410326-72410345 | Msa0570300:intron | 35.0% | |
| AATTTGTCAGGGAAAAGGTT+CGG | + | chr4_1:72410331-72410350 | Msa0570300:CDS | 35.0% | |
| !! | CTTTTGGTGATTTGTGATCT+TGG | + | chr4_1:72410381-72410400 | Msa0570300:intron | 35.0% |
| TTGCCTACAAGAGAAAAAGA+AGG | - | chr4_1:72410444-72410463 | None:intergenic | 35.0% | |
| ! | TTCTTTTTCTCTTGTAGGCA+AGG | + | chr4_1:72410443-72410462 | Msa0570300:intron | 35.0% |
| ! | TCTTTTTCTCTTGTAGGCAA+GGG | + | chr4_1:72410444-72410463 | Msa0570300:intron | 35.0% |
| !! | AGGTGTTAAGGTTGGTATTT+GGG | + | chr4_1:72410579-72410598 | Msa0570300:intron | 35.0% |
| ! | ACTTGTGACCTTTTCCTTTT+TGG | + | chr4_1:72410609-72410628 | Msa0570300:intron | 35.0% |
| ! | CAAGGACTTACATAAGTTGA+GGG | - | chr4_1:72410712-72410731 | None:intergenic | 35.0% |
| TCAAGGACTTACATAAGTTG+AGG | - | chr4_1:72410713-72410732 | None:intergenic | 35.0% | |
| ACTTATGTAAGTCCTTGAGA+TGG | + | chr4_1:72410715-72410734 | Msa0570300:intron | 35.0% | |
| ATATGGATATGTCCATCTCA+AGG | - | chr4_1:72410730-72410749 | None:intergenic | 35.0% | |
| CCGTAATACCTGTTTATGAA+TGG | - | chr4_1:72410884-72410903 | None:intergenic | 35.0% | |
| CATAAACAGGTATTACGGAA+AGG | + | chr4_1:72410886-72410905 | Msa0570300:CDS | 35.0% | |
| GAAAATTGCCATTGTTGTCT+TGG | - | chr4_1:72410935-72410954 | None:intergenic | 35.0% | |
| GAGAGAGAGAGAGAAAAGAT+AGG | - | chr4_1:72406787-72406806 | None:intergenic | 40.0% | |
| ATGGTGTTTGCGTTCGAATT+CGG | - | chr4_1:72406832-72406851 | None:intergenic | 40.0% | |
| AACACCATCACAATGAGGAA+AGG | + | chr4_1:72406844-72406863 | Msa0570300:exon | 40.0% | |
| TTGAGATGAAGCTACAGGTT+GGG | - | chr4_1:72406914-72406933 | None:intergenic | 40.0% | |
| !!! | GTTTTGAGGCGTTTAGCTTT+AGG | - | chr4_1:72406961-72406980 | None:intergenic | 40.0% |
| ! | ATTGGGGTTTAGAGGTTTTG+AGG | - | chr4_1:72406975-72406994 | None:intergenic | 40.0% |
| ! | AAGTATTCAGGTTCGGATTG+GGG | - | chr4_1:72406991-72407010 | None:intergenic | 40.0% |
| ! | GAAGTATTCAGGTTCGGATT+GGG | - | chr4_1:72406992-72407011 | None:intergenic | 40.0% |
| ! | CGCTTATCTTCGAAGTATTC+AGG | - | chr4_1:72407003-72407022 | None:intergenic | 40.0% |
| !!! | TTTTTTCTGTGCTATGCCAG+TGG | + | chr4_1:72407478-72407497 | Msa0570300:intron | 40.0% |
| ! | TTTTTCTGTGCTATGCCAGT+GGG | + | chr4_1:72407479-72407498 | Msa0570300:intron | 40.0% |
| GTTTCAGAATGCATTCGAAG+AGG | + | chr4_1:72407653-72407672 | Msa0570300:intron | 40.0% | |
| CATTGCTTGATCCACTAAAC+TGG | + | chr4_1:72408032-72408051 | Msa0570300:intron | 40.0% | |
| ACCTTTCAACTTTGATGAGC+TGG | + | chr4_1:72408245-72408264 | Msa0570300:intron | 40.0% | |
| ACCAGCTCATCAAAGTTGAA+AGG | - | chr4_1:72408249-72408268 | None:intergenic | 40.0% | |
| GATTAACTCAGTTCAGAGAG+AGG | + | chr4_1:72408359-72408378 | Msa0570300:CDS | 40.0% | |
| TATCAACTTGGCTATCTCTG+TGG | - | chr4_1:72408580-72408599 | None:intergenic | 40.0% | |
| !!! | GATAATTTTTGGGTACAGGC+AGG | - | chr4_1:72408768-72408787 | None:intergenic | 40.0% |
| GAAAACCTGTTCTTCCTAAG+AGG | + | chr4_1:72408969-72408988 | Msa0570300:intron | 40.0% | |
| AAATGCCTCTTAGGAAGAAC+AGG | - | chr4_1:72408977-72408996 | None:intergenic | 40.0% | |
| TTTGCTACATCAAGGACAAC+AGG | - | chr4_1:72409447-72409466 | None:intergenic | 40.0% | |
| !! | TGCTTTGAAACACCTGAAGT+TGG | + | chr4_1:72409517-72409536 | Msa0570300:CDS | 40.0% |
| TGAATTTGAACAAAGCACGG+AGG | + | chr4_1:72409729-72409748 | Msa0570300:CDS | 40.0% | |
| CCGATAGGATTGATACTCTT+TGG | + | chr4_1:72409806-72409825 | Msa0570300:intron | 40.0% | |
| ! | ACTTATGCATTGCTTGTTGC+AGG | + | chr4_1:72409887-72409906 | Msa0570300:intron | 40.0% |
| TGTCACTGTCTTGATGTGTT+AGG | + | chr4_1:72410079-72410098 | Msa0570300:intron | 40.0% | |
| GTCACTGTCTTGATGTGTTA+GGG | + | chr4_1:72410080-72410099 | Msa0570300:intron | 40.0% | |
| TCACTGTCTTGATGTGTTAG+GGG | + | chr4_1:72410081-72410100 | Msa0570300:intron | 40.0% | |
| AGACCAAAAAGATGCCTTCA+AGG | + | chr4_1:72410210-72410229 | Msa0570300:CDS | 40.0% | |
| ATTTGTCAGGGAAAAGGTTC+GGG | + | chr4_1:72410332-72410351 | Msa0570300:CDS | 40.0% | |
| AGCAAAGAAAGCCAATAGAG+AGG | + | chr4_1:72410356-72410375 | Msa0570300:CDS | 40.0% | |
| !!! | AGCCAATAGAGAGGTACTTT+TGG | + | chr4_1:72410365-72410384 | Msa0570300:intron | 40.0% |
| !! | CACCAAAAGTACCTCTCTAT+TGG | - | chr4_1:72410370-72410389 | None:intergenic | 40.0% |
| !! | CAGGTGTTAAGGTTGGTATT+TGG | + | chr4_1:72410578-72410597 | Msa0570300:intron | 40.0% |
| AGATGGACATATCCATATCC+AGG | + | chr4_1:72410732-72410751 | Msa0570300:intron | 40.0% | |
| GATGGACATATCCATATCCA+GGG | + | chr4_1:72410733-72410752 | Msa0570300:intron | 40.0% | |
| TGCAGTCTCCATTCATAAAC+AGG | + | chr4_1:72410873-72410892 | Msa0570300:intron | 40.0% | |
| ! | GATTAGCTCCAAGACAACAA+TGG | + | chr4_1:72410924-72410943 | Msa0570300:exon | 40.0% |
| ! | GACAACAATGGCAATTTTCC+TGG | + | chr4_1:72410936-72410955 | Msa0570300:three_prime_UTR | 40.0% |
| ! | AAATTTGATGGAGCACCAAG+AGG | - | chr4_1:72411005-72411024 | None:intergenic | 40.0% |
| TCCTAGATAAGTGAAGTAGG+TGG | + | chr4_1:72411082-72411101 | Msa0570300:three_prime_UTR | 40.0% | |
| ACCACCTACTTCACTTATCT+AGG | - | chr4_1:72411086-72411105 | None:intergenic | 40.0% | |
| GGATAATTGAGACGTGTTTC+TGG | + | chr4_1:72411108-72411127 | Msa0570300:three_prime_UTR | 40.0% | |
| !! | TTTTGAAGGGGGTGAATCGA+AGG | - | chr4_1:72406763-72406782 | None:intergenic | 45.0% |
| ACGCAAACACCATCACAATG+AGG | + | chr4_1:72406839-72406858 | Msa0570300:exon | 45.0% | |
| AGCACCTTTCCTCATTGTGA+TGG | - | chr4_1:72406851-72406870 | None:intergenic | 45.0% | |
| !! | GGAATCAGGTTGGGAATCTT+CGG | - | chr4_1:72406893-72406912 | None:intergenic | 45.0% |
| ! | TACAGGTTGGGAATCAGGTT+GGG | - | chr4_1:72406902-72406921 | None:intergenic | 45.0% |
| CTTGAGATGAAGCTACAGGT+TGG | - | chr4_1:72406915-72406934 | None:intergenic | 45.0% | |
| !! | GAGGCGTTTAGCTTTAGGTT+TGG | - | chr4_1:72406956-72406975 | None:intergenic | 45.0% |
| ! | CGAAGTATTCAGGTTCGGAT+TGG | - | chr4_1:72406993-72407012 | None:intergenic | 45.0% |
| CAGCCCTAATACTCACTTCT+AGG | - | chr4_1:72407548-72407567 | None:intergenic | 45.0% | |
| TGGCCTCTTGTATGGAAAGA+AGG | + | chr4_1:72407677-72407696 | Msa0570300:CDS | 45.0% | |
| ! | GTTTTCATCGTTTTGCGAGG+TGG | + | chr4_1:72407737-72407756 | Msa0570300:intron | 45.0% |
| !! | GGTCTGGCAACTAATTTGCT+TGG | + | chr4_1:72407758-72407777 | Msa0570300:intron | 45.0% |
| !! | CTGGCAACTAATTTGCTTGG+TGG | + | chr4_1:72407761-72407780 | Msa0570300:intron | 45.0% |
| ATGACCAGTTGAGCTGCAAA+CGG | - | chr4_1:72407830-72407849 | None:intergenic | 45.0% | |
| CTCAACTGGTCATGCATCAA+GGG | + | chr4_1:72407837-72407856 | Msa0570300:CDS | 45.0% | |
| TCAACTGGTCATGCATCAAG+GGG | + | chr4_1:72407838-72407857 | Msa0570300:CDS | 45.0% | |
| TGTCTGCATACCTGTTGTTG+TGG | + | chr4_1:72407871-72407890 | Msa0570300:CDS | 45.0% | |
| AACGCGTCTTCATGATACAC+AGG | - | chr4_1:72407920-72407939 | None:intergenic | 45.0% | |
| TTTGGGTACAGGCAGGAAAA+GGG | - | chr4_1:72408761-72408780 | None:intergenic | 45.0% | |
| !! | TTTTGGGTACAGGCAGGAAA+AGG | - | chr4_1:72408762-72408781 | None:intergenic | 45.0% |
| ! | TGCTTGCCCTGTAAGTTTTC+TGG | + | chr4_1:72409563-72409582 | Msa0570300:intron | 45.0% |
| ATATCCAGTTGAGCCAAAGC+CGG | + | chr4_1:72409762-72409781 | Msa0570300:CDS | 45.0% | |
| ACTTATTGAGGGGGAAGAGT+TGG | + | chr4_1:72410183-72410202 | Msa0570300:CDS | 45.0% | |
| AGCCATTGCTGAAATGAGTG+CGG | + | chr4_1:72410480-72410499 | Msa0570300:CDS | 45.0% | |
| TTCCGCACTCATTTCAGCAA+TGG | - | chr4_1:72410485-72410504 | None:intergenic | 45.0% | |
| ACCTGATGTGTCAGGTGTTA+AGG | + | chr4_1:72410567-72410586 | Msa0570300:CDS | 45.0% | |
| ACCTTAACACCTGACACATC+AGG | - | chr4_1:72410571-72410590 | None:intergenic | 45.0% | |
| GATGTGTCAGGTGTTAAGGT+TGG | + | chr4_1:72410571-72410590 | Msa0570300:intron | 45.0% | |
| GACATATCCATATCCAGGGA+AGG | + | chr4_1:72410737-72410756 | Msa0570300:intron | 45.0% | |
| GTATTACGGAAAGGCTCATG+AGG | + | chr4_1:72410895-72410914 | Msa0570300:CDS | 45.0% | |
| AAATACGGGCAAAACAAGCC+AGG | - | chr4_1:72410957-72410976 | None:intergenic | 45.0% | |
| GATAAGTGAAGTAGGTGGTG+AGG | + | chr4_1:72411087-72411106 | Msa0570300:three_prime_UTR | 45.0% | |
| !! | TTTGTTTATTAATATTATTA+AGG | + | chr4_1:72407225-72407244 | Msa0570300:intron | 5.0% |
| !!! | TATTTTTTTTTCATTAAATT+TGG | + | chr4_1:72407957-72407976 | Msa0570300:intron | 5.0% |
| !!! | AAATAATAATGATAATTTTT+GGG | - | chr4_1:72408778-72408797 | None:intergenic | 5.0% |
| !!! | AAAATAATAATGATAATTTT+TGG | - | chr4_1:72408779-72408798 | None:intergenic | 5.0% |
| !! | TGAATCGAAGGCGCTAGATC+CGG | - | chr4_1:72406751-72406770 | None:intergenic | 50.0% |
| ! | TTGGGAATCTTCGGTGTGCT+TGG | - | chr4_1:72406884-72406903 | None:intergenic | 50.0% |
| ! | CTACAGGTTGGGAATCAGGT+TGG | - | chr4_1:72406903-72406922 | None:intergenic | 50.0% |
| ! | GAAGCTACAGGTTGGGAATC+AGG | - | chr4_1:72406907-72406926 | None:intergenic | 50.0% |
| ! | AGGTTCGGATTGGGGTTTAG+AGG | - | chr4_1:72406983-72407002 | None:intergenic | 50.0% |
| TGGCTCGAAACATTCCCTGT+CGG | + | chr4_1:72407384-72407403 | Msa0570300:CDS | 50.0% | |
| !! | AACAAACCTCAGTGCCGACA+GGG | - | chr4_1:72407401-72407420 | None:intergenic | 50.0% |
| CAGAATGCATTCGAAGAGGG+TGG | + | chr4_1:72407657-72407676 | Msa0570300:intron | 50.0% | |
| !! | TACGCTCGGTGCAACCAAAT+AGG | - | chr4_1:72407707-72407726 | None:intergenic | 50.0% |
| GCTCAACTGGTCATGCATCA+AGG | + | chr4_1:72407836-72407855 | Msa0570300:intron | 50.0% | |
| CTGCATACCTGTTGTTGTGG+CGG | + | chr4_1:72407874-72407893 | Msa0570300:CDS | 50.0% | |
| GAACTTACCGCCACAACAAC+AGG | - | chr4_1:72407884-72407903 | None:intergenic | 50.0% | |
| TGGCGGTAAGTTCTCACACT+GGG | + | chr4_1:72407891-72407910 | Msa0570300:intron | 50.0% | |
| CAGATAAACAAGGTCCCGCA+AGG | - | chr4_1:72408143-72408162 | None:intergenic | 50.0% | |
| ! | CTTGCGGGACCTTGTTTATC+TGG | + | chr4_1:72408141-72408160 | Msa0570300:intron | 50.0% |
| CGTTGCTCCAGAGGAATGTA+CGG | - | chr4_1:72408429-72408448 | None:intergenic | 50.0% | |
| !! | CGTACATTCCTCTGGAGCAA+CGG | + | chr4_1:72408427-72408446 | Msa0570300:CDS | 50.0% |
| TCTTGCGTTGCACCCAAAGA+AGG | + | chr4_1:72408621-72408640 | Msa0570300:CDS | 50.0% | |
| !! | ATTACCGGCTTTGGCTCAAC+TGG | - | chr4_1:72409769-72409788 | None:intergenic | 50.0% |
| TCTTGTAGGCAAGGGAAGCA+CGG | + | chr4_1:72410452-72410471 | Msa0570300:intron | 50.0% | |
| ACCTGACACATCAGGTGCAT+CGG | - | chr4_1:72410563-72410582 | None:intergenic | 50.0% | |
| TATCATCGGTCATCCTTCCC+TGG | - | chr4_1:72410753-72410772 | None:intergenic | 50.0% | |
| AAGTTTACCCGGCAACCTCT+TGG | + | chr4_1:72410987-72411006 | Msa0570300:three_prime_UTR | 50.0% | |
| AACATTCCCTGTCGGCACTG+AGG | + | chr4_1:72407392-72407411 | Msa0570300:CDS | 55.0% | |
| !! | CAACAAACCTCAGTGCCGAC+AGG | - | chr4_1:72407402-72407421 | None:intergenic | 55.0% |
| GCTATGCCAGTGGGACCAAT+TGG | + | chr4_1:72407488-72407507 | Msa0570300:intron | 55.0% | |
| CAGCATCCAATTGGTCCCAC+TGG | - | chr4_1:72407497-72407516 | None:intergenic | 55.0% | |
| GAAGAGGGTGGCCTCTTGTA+TGG | + | chr4_1:72407669-72407688 | Msa0570300:CDS | 55.0% | |
| ! | CATCGTTTTGCGAGGTGGTC+TGG | + | chr4_1:72407742-72407761 | Msa0570300:intron | 55.0% |
| GTTGAGCTGCAAACGGCAAC+AGG | - | chr4_1:72407823-72407842 | None:intergenic | 55.0% | |
| ! | GTTGCCGTTTGCAGCTCAAC+TGG | + | chr4_1:72407823-72407842 | Msa0570300:intron | 55.0% |
| GTGGCGGTAAGTTCTCACAC+TGG | + | chr4_1:72407890-72407909 | Msa0570300:intron | 55.0% | |
| TTTGGGTGGGGCCAGTTTAG+TGG | - | chr4_1:72408046-72408065 | None:intergenic | 55.0% | |
| ACTAAACTGGCCCCACCCAA+AGG | + | chr4_1:72408045-72408064 | Msa0570300:intron | 55.0% | |
| CTGGGTTCCGTACATTCCTC+TGG | + | chr4_1:72408419-72408438 | Msa0570300:CDS | 55.0% | |
| GATGCATACCGTTGCTCCAG+AGG | - | chr4_1:72408438-72408457 | None:intergenic | 55.0% | |
| AGGTGCATCGGGAGATGGAA+CGG | - | chr4_1:72410551-72410570 | None:intergenic | 55.0% | |
| ACATCAGGTGCATCGGGAGA+TGG | - | chr4_1:72410556-72410575 | None:intergenic | 55.0% | |
| CCTGACACATCAGGTGCATC+GGG | - | chr4_1:72410562-72410581 | None:intergenic | 55.0% | |
| CGGTCATCCTTCCCTGGATA+TGG | - | chr4_1:72410747-72410766 | None:intergenic | 55.0% | |
| ! | ATGGAGCACCAAGAGGTTGC+CGG | - | chr4_1:72410998-72411017 | None:intergenic | 55.0% |
| GGTGCATCGGGAGATGGAAC+GGG | - | chr4_1:72410550-72410569 | None:intergenic | 60.0% | |
| CCCGATGCACCTGATGTGTC+AGG | + | chr4_1:72410559-72410578 | Msa0570300:CDS | 60.0% | |
| ! | TGGAGCACCAAGAGGTTGCC+GGG | - | chr4_1:72410997-72411016 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 72406747 | 72411301 | 72406747 | ID=Msa0570300;Name=Msa0570300 |
| chr4_1 | mRNA | 72406747 | 72411301 | 72406747 | ID=Msa0570300-mRNA-1;Parent=Msa0570300;Name=Msa0570300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=109|1|1|1|1|1|14|376|346 |
| chr4_1 | exon | 72406747 | 72407029 | 72406747 | ID=Msa0570300-mRNA-1:exon:24731;Parent=Msa0570300-mRNA-1 |
| chr4_1 | exon | 72407375 | 72407413 | 72407375 | ID=Msa0570300-mRNA-1:exon:24732;Parent=Msa0570300-mRNA-1 |
| chr4_1 | exon | 72407498 | 72407551 | 72407498 | ID=Msa0570300-mRNA-1:exon:24733;Parent=Msa0570300-mRNA-1 |
| chr4_1 | exon | 72407660 | 72407723 | 72407660 | ID=Msa0570300-mRNA-1:exon:24734;Parent=Msa0570300-mRNA-1 |
| chr4_1 | exon | 72407837 | 72407895 | 72407837 | ID=Msa0570300-mRNA-1:exon:24735;Parent=Msa0570300-mRNA-1 |
| chr4_1 | exon | 72408324 | 72408448 | 72408324 | ID=Msa0570300-mRNA-1:exon:24736;Parent=Msa0570300-mRNA-1 |
| chr4_1 | exon | 72408583 | 72408642 | 72408583 | ID=Msa0570300-mRNA-1:exon:24737;Parent=Msa0570300-mRNA-1 |
| chr4_1 | exon | 72409514 | 72409572 | 72409514 | ID=Msa0570300-mRNA-1:exon:24738;Parent=Msa0570300-mRNA-1 |
| chr4_1 | exon | 72409704 | 72409783 | 72409704 | ID=Msa0570300-mRNA-1:exon:24739;Parent=Msa0570300-mRNA-1 |
| chr4_1 | exon | 72409909 | 72409947 | 72409909 | ID=Msa0570300-mRNA-1:exon:24740;Parent=Msa0570300-mRNA-1 |
| chr4_1 | exon | 72410169 | 72410231 | 72410169 | ID=Msa0570300-mRNA-1:exon:24741;Parent=Msa0570300-mRNA-1 |
| chr4_1 | exon | 72410330 | 72410377 | 72410330 | ID=Msa0570300-mRNA-1:exon:24742;Parent=Msa0570300-mRNA-1 |
| chr4_1 | exon | 72410460 | 72410588 | 72410460 | ID=Msa0570300-mRNA-1:exon:24743;Parent=Msa0570300-mRNA-1 |
| chr4_1 | exon | 72410878 | 72411301 | 72410878 | ID=Msa0570300-mRNA-1:exon:24744;Parent=Msa0570300-mRNA-1 |
| chr4_1 | five_prime_UTR | 72406747 | 72406855 | 72406747 | ID=Msa0570300-mRNA-1:five_prime_utr;Parent=Msa0570300-mRNA-1 |
| chr4_1 | CDS | 72406856 | 72407029 | 72406856 | ID=Msa0570300-mRNA-1:cds;Parent=Msa0570300-mRNA-1 |
| chr4_1 | CDS | 72407375 | 72407413 | 72407375 | ID=Msa0570300-mRNA-1:cds;Parent=Msa0570300-mRNA-1 |
| chr4_1 | CDS | 72407498 | 72407551 | 72407498 | ID=Msa0570300-mRNA-1:cds;Parent=Msa0570300-mRNA-1 |
| chr4_1 | CDS | 72407660 | 72407723 | 72407660 | ID=Msa0570300-mRNA-1:cds;Parent=Msa0570300-mRNA-1 |
| chr4_1 | CDS | 72407837 | 72407895 | 72407837 | ID=Msa0570300-mRNA-1:cds;Parent=Msa0570300-mRNA-1 |
| chr4_1 | CDS | 72408324 | 72408448 | 72408324 | ID=Msa0570300-mRNA-1:cds;Parent=Msa0570300-mRNA-1 |
| chr4_1 | CDS | 72408583 | 72408642 | 72408583 | ID=Msa0570300-mRNA-1:cds;Parent=Msa0570300-mRNA-1 |
| chr4_1 | CDS | 72409514 | 72409572 | 72409514 | ID=Msa0570300-mRNA-1:cds;Parent=Msa0570300-mRNA-1 |
| chr4_1 | CDS | 72409704 | 72409783 | 72409704 | ID=Msa0570300-mRNA-1:cds;Parent=Msa0570300-mRNA-1 |
| chr4_1 | CDS | 72409909 | 72409947 | 72409909 | ID=Msa0570300-mRNA-1:cds;Parent=Msa0570300-mRNA-1 |
| chr4_1 | CDS | 72410169 | 72410231 | 72410169 | ID=Msa0570300-mRNA-1:cds;Parent=Msa0570300-mRNA-1 |
| chr4_1 | CDS | 72410330 | 72410377 | 72410330 | ID=Msa0570300-mRNA-1:cds;Parent=Msa0570300-mRNA-1 |
| chr4_1 | CDS | 72410460 | 72410588 | 72410460 | ID=Msa0570300-mRNA-1:cds;Parent=Msa0570300-mRNA-1 |
| chr4_1 | CDS | 72410878 | 72410925 | 72410878 | ID=Msa0570300-mRNA-1:cds;Parent=Msa0570300-mRNA-1 |
| chr4_1 | three_prime_UTR | 72410926 | 72411301 | 72410926 | ID=Msa0570300-mRNA-1:three_prime_utr;Parent=Msa0570300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
