Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541980 | XP_003606841.1 | 89.899 | 198 | 20 | 0 | 1 | 198 | 1 | 198 | 1.85e-124 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541980 | sp|Q9FK61|Y5809_ARATH | 28.671 | 143 | 97 | 4 | 4 | 144 | 11 | 150 | 9.93e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541980 | G7JEY0 | 89.899 | 198 | 20 | 0 | 1 | 198 | 1 | 198 | 8.83e-125 | 359 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0541980 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0541980 | Msa0604730 | 0.848832 | 4.767675e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541980 | MtrunA17_Chr4g0033951 | 89.899 | 198 | 20 | 0 | 1 | 198 | 1 | 198 | 1.70e-128 | 359 |
| Msa0541980 | MtrunA17_Chr4g0033941 | 54.487 | 156 | 50 | 6 | 44 | 180 | 1 | 154 | 1.89e-37 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541980 | AT5G18090.1 | 28.671 | 143 | 97 | 4 | 4 | 144 | 11 | 150 | 1.01e-12 | 65.9 |
| Msa0541980 | AT5G18000.1 | 31.132 | 106 | 72 | 1 | 4 | 108 | 13 | 118 | 2.16e-12 | 64.7 |
| Msa0541980 | AT3G17010.1 | 28.402 | 169 | 108 | 5 | 4 | 164 | 14 | 177 | 1.96e-11 | 62.0 |
Find 41 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCTCTTGGCCACAAT+TGG | 0.131130 | 4_1:+26088188 | None:intergenic |
| ATGTTCAAGGTGGAAATTTA+TGG | 0.176554 | 4_1:-26088266 | Msa0541980:CDS |
| ACCGAAGATTGTTATGGATT+TGG | 0.260147 | 4_1:-26088471 | Msa0541980:CDS |
| GAAGAAAGCATCAATTATTC+TGG | 0.262336 | 4_1:-26088435 | Msa0541980:CDS |
| TGGATTTGGGTGAAGAGTTT+TGG | 0.266007 | 4_1:-26088457 | Msa0541980:CDS |
| TTCTTTGATGATAGCGAAAA+AGG | 0.271206 | 4_1:+26088998 | None:intergenic |
| CCGAAGATTGTTATGGATTT+GGG | 0.289825 | 4_1:-26088470 | Msa0541980:CDS |
| AGTGGGACTTGAAGAGTTCT+TGG | 0.304248 | 4_1:-26088312 | Msa0541980:CDS |
| TTTCCAACGCATACTCTCTT+TGG | 0.308501 | 4_1:+26088068 | None:intergenic |
| CCCTTCTTTGTCACAATTGT+TGG | 0.332631 | 4_1:+26088026 | None:intergenic |
| TCTTTCTCTTGGCCACAATT+GGG | 0.346000 | 4_1:+26088189 | None:intergenic |
| GTGGAAATTTATGGTAAGAA+TGG | 0.371009 | 4_1:-26088257 | Msa0541980:CDS |
| TTTGTCTTAGCCACAATTGT+TGG | 0.398096 | 4_1:+26088110 | None:intergenic |
| TGGTCTACCCCTCTTTCTCT+TGG | 0.402146 | 4_1:+26088178 | None:intergenic |
| AGTACCACCGAAGATTGTTA+TGG | 0.409721 | 4_1:-26088477 | Msa0541980:CDS |
| TGGAAATTTATGGTAAGAAT+GGG | 0.420098 | 4_1:-26088256 | Msa0541980:CDS |
| CTTTCTCTTGGCCACAATTG+GGG | 0.448018 | 4_1:+26088190 | None:intergenic |
| CCCAAATCCATAACAATCTT+CGG | 0.452160 | 4_1:+26088470 | None:intergenic |
| GACATTTATCTGCGAAACAT+TGG | 0.475455 | 4_1:-26088362 | Msa0541980:CDS |
| ACCAACAATTGTGACAAAGA+AGG | 0.484661 | 4_1:-26088027 | Msa0541980:CDS |
| TCTACTAAAATAACAGAAAG+AGG | 0.490912 | 4_1:+26087981 | None:intergenic |
| CAATTGTGGCCAAGAGAAAG+AGG | 0.520539 | 4_1:-26088187 | Msa0541980:CDS |
| CCAACAATTGTGACAAAGAA+GGG | 0.536191 | 4_1:-26088026 | Msa0541980:CDS |
| TATTGGAGATAACATGTTCA+AGG | 0.538893 | 4_1:-26088279 | Msa0541980:CDS |
| AAAATAACAGAAAGAGGAGC+AGG | 0.548640 | 4_1:+26087987 | None:intergenic |
| TTTATCTGCGAAACATTGGT+TGG | 0.556011 | 4_1:-26088358 | Msa0541980:CDS |
| AGTTGTTGCAGCCCCAATTG+TGG | 0.571592 | 4_1:-26088201 | Msa0541980:CDS |
| AATTGTGGCTAAGACAAAGA+TGG | 0.585870 | 4_1:-26088105 | Msa0541980:CDS |
| AGAAGCTGCACCAACAATTG+TGG | 0.589864 | 4_1:-26088120 | Msa0541980:CDS |
| CAAATGAATTACCATGCACT+TGG | 0.596053 | 4_1:+26088965 | None:intergenic |
| TATGCTCTTCGAGTGAGAAG+TGG | 0.604662 | 4_1:-26088412 | Msa0541980:CDS |
| AGGCTTCAACACCAAGTGCA+TGG | 0.605306 | 4_1:-26088976 | Msa0541980:intron |
| ATGCTCTTCGAGTGAGAAGT+GGG | 0.605893 | 4_1:-26088411 | Msa0541980:CDS |
| TTTCTGAAAGACAACTCAGT+GGG | 0.610997 | 4_1:-26088329 | Msa0541980:CDS |
| AATCCAAAGAGAGTATGCGT+TGG | 0.611249 | 4_1:-26088071 | Msa0541980:CDS |
| AATTGTGGCCAAGAGAAAGA+GGG | 0.618437 | 4_1:-26088186 | Msa0541980:CDS |
| TGGAGATAACATGTTCAAGG+TGG | 0.674338 | 4_1:-26088276 | Msa0541980:CDS |
| CGTTGGAAAACAAAACGCAG+AGG | 0.680803 | 4_1:-26088054 | Msa0541980:CDS |
| ATTGTGGCCAAGAGAAAGAG+GGG | 0.688040 | 4_1:-26088185 | Msa0541980:CDS |
| AAATCCATAACAATCTTCGG+TGG | 0.712870 | 4_1:+26088473 | None:intergenic |
| GTTTCTGAAAGACAACTCAG+TGG | 0.730659 | 4_1:-26088330 | Msa0541980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATAATATGTTTACTTTTT+TGG | - | chr4_1:26088344-26088363 | Msa0541980:CDS | 15.0% |
| !! | TTATGACAAAATAAAAAACA+TGG | + | chr4_1:26088497-26088516 | None:intergenic | 15.0% |
| !!! | CAATAATATGTTTACTTTTT+TGG | - | chr4_1:26088344-26088363 | Msa0541980:CDS | 15.0% |
| !! | TTATGACAAAATAAAAAACA+TGG | + | chr4_1:26088497-26088516 | None:intergenic | 15.0% |
| !! | TAGAAAAATGTTATTAAGCT+AGG | - | chr4_1:26088184-26088203 | Msa0541980:CDS | 20.0% |
| !! | TATATATGTATAATCTCTGT+TGG | + | chr4_1:26088256-26088275 | None:intergenic | 20.0% |
| !! | ATTATACATATATATGAACC+CGG | - | chr4_1:26088262-26088281 | Msa0541980:CDS | 20.0% |
| !!! | GAAGTTAAAATTTTGAAGAA+AGG | - | chr4_1:26088614-26088633 | Msa0541980:intron | 20.0% |
| !! | TAGAAAAATGTTATTAAGCT+AGG | - | chr4_1:26088184-26088203 | Msa0541980:CDS | 20.0% |
| !! | TATATATGTATAATCTCTGT+TGG | + | chr4_1:26088256-26088275 | None:intergenic | 20.0% |
| !! | ATTATACATATATATGAACC+CGG | - | chr4_1:26088262-26088281 | Msa0541980:CDS | 20.0% |
| !!! | GAAGTTAAAATTTTGAAGAA+AGG | - | chr4_1:26088614-26088633 | Msa0541980:intron | 20.0% |
| !!! | TACTGAATGAGTTTTAAACT+TGG | + | chr4_1:26088221-26088240 | None:intergenic | 25.0% |
| ! | ATATTATTGAGCTTGATATC+TGG | + | chr4_1:26088333-26088352 | None:intergenic | 25.0% |
| !!! | TTCTTGGTTTTCACATATAT+TGG | - | chr4_1:26088707-26088726 | Msa0541980:intron | 25.0% |
| ! | TGGAAATTTATGGTAAGAAT+GGG | - | chr4_1:26088747-26088766 | Msa0541980:intron | 25.0% |
| ! | TCTACTAAAATAACAGAAAG+AGG | + | chr4_1:26089025-26089044 | None:intergenic | 25.0% |
| !!! | TACTGAATGAGTTTTAAACT+TGG | + | chr4_1:26088221-26088240 | None:intergenic | 25.0% |
| ! | ATATTATTGAGCTTGATATC+TGG | + | chr4_1:26088333-26088352 | None:intergenic | 25.0% |
| !!! | TTCTTGGTTTTCACATATAT+TGG | - | chr4_1:26088707-26088726 | Msa0541980:intron | 25.0% |
| ! | TGGAAATTTATGGTAAGAAT+GGG | - | chr4_1:26088747-26088766 | Msa0541980:intron | 25.0% |
| ! | TCTACTAAAATAACAGAAAG+AGG | + | chr4_1:26089025-26089044 | None:intergenic | 25.0% |
| ! | TTCTTTGATGATAGCGAAAA+AGG | + | chr4_1:26088008-26088027 | None:intergenic | 30.0% |
| ! | TTTTTCGCTATCATCAAAGA+AGG | - | chr4_1:26088007-26088026 | Msa0541980:CDS | 30.0% |
| !! | GAAGAAAGCATCAATTATTC+TGG | - | chr4_1:26088568-26088587 | Msa0541980:intron | 30.0% |
| TATTGGAGATAACATGTTCA+AGG | - | chr4_1:26088724-26088743 | Msa0541980:intron | 30.0% | |
| ATGTTCAAGGTGGAAATTTA+TGG | - | chr4_1:26088737-26088756 | Msa0541980:intron | 30.0% | |
| GTGGAAATTTATGGTAAGAA+TGG | - | chr4_1:26088746-26088765 | Msa0541980:intron | 30.0% | |
| ! | TTCTTTGATGATAGCGAAAA+AGG | + | chr4_1:26088008-26088027 | None:intergenic | 30.0% |
| ! | TTTTTCGCTATCATCAAAGA+AGG | - | chr4_1:26088007-26088026 | Msa0541980:CDS | 30.0% |
| !! | GAAGAAAGCATCAATTATTC+TGG | - | chr4_1:26088568-26088587 | Msa0541980:intron | 30.0% |
| TATTGGAGATAACATGTTCA+AGG | - | chr4_1:26088724-26088743 | Msa0541980:intron | 30.0% | |
| ATGTTCAAGGTGGAAATTTA+TGG | - | chr4_1:26088737-26088756 | Msa0541980:intron | 30.0% | |
| GTGGAAATTTATGGTAAGAA+TGG | - | chr4_1:26088746-26088765 | Msa0541980:intron | 30.0% | |
| ! | TTGATGATAGCGAAAAAGGA+TGG | + | chr4_1:26088004-26088023 | None:intergenic | 35.0% |
| CAAATGAATTACCATGCACT+TGG | + | chr4_1:26088041-26088060 | None:intergenic | 35.0% | |
| GAGAAATACCTGTCTTTCTT+TGG | - | chr4_1:26088114-26088133 | Msa0541980:CDS | 35.0% | |
| AAATCCATAACAATCTTCGG+TGG | + | chr4_1:26088533-26088552 | None:intergenic | 35.0% | |
| ACCGAAGATTGTTATGGATT+TGG | - | chr4_1:26088532-26088551 | Msa0541980:intron | 35.0% | |
| CCCAAATCCATAACAATCTT+CGG | + | chr4_1:26088536-26088555 | None:intergenic | 35.0% | |
| CCGAAGATTGTTATGGATTT+GGG | - | chr4_1:26088533-26088552 | Msa0541980:intron | 35.0% | |
| GACATTTATCTGCGAAACAT+TGG | - | chr4_1:26088641-26088660 | Msa0541980:intron | 35.0% | |
| TTTATCTGCGAAACATTGGT+TGG | - | chr4_1:26088645-26088664 | Msa0541980:intron | 35.0% | |
| ! | TTTCTGAAAGACAACTCAGT+GGG | - | chr4_1:26088674-26088693 | Msa0541980:intron | 35.0% |
| !!! | TCTTGCTTTTTCTTGAAGCA+TGG | + | chr4_1:26088782-26088801 | None:intergenic | 35.0% |
| !!! | ACATCAGCAGGATTTTTTCT+TGG | + | chr4_1:26088848-26088867 | None:intergenic | 35.0% |
| AAAAAATCCTGCTGATGTCA+AGG | - | chr4_1:26088850-26088869 | Msa0541980:intron | 35.0% | |
| TTTGTCTTAGCCACAATTGT+TGG | + | chr4_1:26088896-26088915 | None:intergenic | 35.0% | |
| AATTGTGGCTAAGACAAAGA+TGG | - | chr4_1:26088898-26088917 | Msa0541980:intron | 35.0% | |
| ACCAACAATTGTGACAAAGA+AGG | - | chr4_1:26088976-26088995 | Msa0541980:intron | 35.0% | |
| CCAACAATTGTGACAAAGAA+GGG | - | chr4_1:26088977-26088996 | Msa0541980:CDS | 35.0% | |
| AAAATAACAGAAAGAGGAGC+AGG | + | chr4_1:26089019-26089038 | None:intergenic | 35.0% | |
| ! | TTGATGATAGCGAAAAAGGA+TGG | + | chr4_1:26088004-26088023 | None:intergenic | 35.0% |
| CAAATGAATTACCATGCACT+TGG | + | chr4_1:26088041-26088060 | None:intergenic | 35.0% | |
| GAGAAATACCTGTCTTTCTT+TGG | - | chr4_1:26088114-26088133 | Msa0541980:CDS | 35.0% | |
| AAATCCATAACAATCTTCGG+TGG | + | chr4_1:26088533-26088552 | None:intergenic | 35.0% | |
| ACCGAAGATTGTTATGGATT+TGG | - | chr4_1:26088532-26088551 | Msa0541980:intron | 35.0% | |
| CCCAAATCCATAACAATCTT+CGG | + | chr4_1:26088536-26088555 | None:intergenic | 35.0% | |
| CCGAAGATTGTTATGGATTT+GGG | - | chr4_1:26088533-26088552 | Msa0541980:intron | 35.0% | |
| GACATTTATCTGCGAAACAT+TGG | - | chr4_1:26088641-26088660 | Msa0541980:intron | 35.0% | |
| TTTATCTGCGAAACATTGGT+TGG | - | chr4_1:26088645-26088664 | Msa0541980:intron | 35.0% | |
| ! | TTTCTGAAAGACAACTCAGT+GGG | - | chr4_1:26088674-26088693 | Msa0541980:intron | 35.0% |
| !!! | TCTTGCTTTTTCTTGAAGCA+TGG | + | chr4_1:26088782-26088801 | None:intergenic | 35.0% |
| !!! | ACATCAGCAGGATTTTTTCT+TGG | + | chr4_1:26088848-26088867 | None:intergenic | 35.0% |
| AAAAAATCCTGCTGATGTCA+AGG | - | chr4_1:26088850-26088869 | Msa0541980:intron | 35.0% | |
| TTTGTCTTAGCCACAATTGT+TGG | + | chr4_1:26088896-26088915 | None:intergenic | 35.0% | |
| AATTGTGGCTAAGACAAAGA+TGG | - | chr4_1:26088898-26088917 | Msa0541980:intron | 35.0% | |
| ACCAACAATTGTGACAAAGA+AGG | - | chr4_1:26088976-26088995 | Msa0541980:intron | 35.0% | |
| CCAACAATTGTGACAAAGAA+GGG | - | chr4_1:26088977-26088996 | Msa0541980:CDS | 35.0% | |
| AAAATAACAGAAAGAGGAGC+AGG | + | chr4_1:26089019-26089038 | None:intergenic | 35.0% | |
| ATCAGCATCCAAAGAAAGAC+AGG | + | chr4_1:26088125-26088144 | None:intergenic | 40.0% | |
| ! | TAATCTCTGTTGGTGAGCTA+AGG | + | chr4_1:26088246-26088265 | None:intergenic | 40.0% |
| AGTACCACCGAAGATTGTTA+TGG | - | chr4_1:26088526-26088545 | Msa0541980:intron | 40.0% | |
| ! | TGGATTTGGGTGAAGAGTTT+TGG | - | chr4_1:26088546-26088565 | Msa0541980:intron | 40.0% |
| ! | GTTTCTGAAAGACAACTCAG+TGG | - | chr4_1:26088673-26088692 | Msa0541980:intron | 40.0% |
| TGGAGATAACATGTTCAAGG+TGG | - | chr4_1:26088727-26088746 | Msa0541980:intron | 40.0% | |
| TCTTTCTCTTGGCCACAATT+GGG | + | chr4_1:26088817-26088836 | None:intergenic | 40.0% | |
| AATTGTGGCCAAGAGAAAGA+GGG | - | chr4_1:26088817-26088836 | Msa0541980:intron | 40.0% | |
| ! | TTTTCTTCCTTGACATCAGC+AGG | + | chr4_1:26088860-26088879 | None:intergenic | 40.0% |
| ! | AATCCAAAGAGAGTATGCGT+TGG | - | chr4_1:26088932-26088951 | Msa0541980:intron | 40.0% |
| TTTCCAACGCATACTCTCTT+TGG | + | chr4_1:26088938-26088957 | None:intergenic | 40.0% | |
| CCCTTCTTTGTCACAATTGT+TGG | + | chr4_1:26088980-26088999 | None:intergenic | 40.0% | |
| ATCAGCATCCAAAGAAAGAC+AGG | + | chr4_1:26088125-26088144 | None:intergenic | 40.0% | |
| ! | TAATCTCTGTTGGTGAGCTA+AGG | + | chr4_1:26088246-26088265 | None:intergenic | 40.0% |
| AGTACCACCGAAGATTGTTA+TGG | - | chr4_1:26088526-26088545 | Msa0541980:intron | 40.0% | |
| ! | TGGATTTGGGTGAAGAGTTT+TGG | - | chr4_1:26088546-26088565 | Msa0541980:intron | 40.0% |
| ! | GTTTCTGAAAGACAACTCAG+TGG | - | chr4_1:26088673-26088692 | Msa0541980:intron | 40.0% |
| TGGAGATAACATGTTCAAGG+TGG | - | chr4_1:26088727-26088746 | Msa0541980:intron | 40.0% | |
| TCTTTCTCTTGGCCACAATT+GGG | + | chr4_1:26088817-26088836 | None:intergenic | 40.0% | |
| AATTGTGGCCAAGAGAAAGA+GGG | - | chr4_1:26088817-26088836 | Msa0541980:intron | 40.0% | |
| ! | TTTTCTTCCTTGACATCAGC+AGG | + | chr4_1:26088860-26088879 | None:intergenic | 40.0% |
| ! | AATCCAAAGAGAGTATGCGT+TGG | - | chr4_1:26088932-26088951 | Msa0541980:intron | 40.0% |
| TTTCCAACGCATACTCTCTT+TGG | + | chr4_1:26088938-26088957 | None:intergenic | 40.0% | |
| CCCTTCTTTGTCACAATTGT+TGG | + | chr4_1:26088980-26088999 | None:intergenic | 40.0% | |
| ATATGAACCCGGATTCCCTA+CGG | - | chr4_1:26088273-26088292 | Msa0541980:CDS | 45.0% | |
| TTGAATGACCGTAGGGAATC+CGG | + | chr4_1:26088284-26088303 | None:intergenic | 45.0% | |
| GCTTGCATTGAATGACCGTA+GGG | + | chr4_1:26088291-26088310 | None:intergenic | 45.0% | |
| TGCTTGCATTGAATGACCGT+AGG | + | chr4_1:26088292-26088311 | None:intergenic | 45.0% | |
| GTCATTCAATGCAAGCAGAC+AGG | - | chr4_1:26088295-26088314 | Msa0541980:CDS | 45.0% | |
| GATCATCCAATCGAGATGGA+CGG | + | chr4_1:26088371-26088390 | None:intergenic | 45.0% | |
| TCGTGATCATCCAATCGAGA+TGG | + | chr4_1:26088375-26088394 | None:intergenic | 45.0% | |
| TATGCTCTTCGAGTGAGAAG+TGG | - | chr4_1:26088591-26088610 | Msa0541980:intron | 45.0% | |
| ATGCTCTTCGAGTGAGAAGT+GGG | - | chr4_1:26088592-26088611 | Msa0541980:intron | 45.0% | |
| AGTGGGACTTGAAGAGTTCT+TGG | - | chr4_1:26088691-26088710 | Msa0541980:intron | 45.0% | |
| CTTTCTCTTGGCCACAATTG+GGG | + | chr4_1:26088816-26088835 | None:intergenic | 45.0% | |
| CTCTTTCTCTTGGCCACAAT+TGG | + | chr4_1:26088818-26088837 | None:intergenic | 45.0% | |
| CAATTGTGGCCAAGAGAAAG+AGG | - | chr4_1:26088816-26088835 | Msa0541980:intron | 45.0% | |
| ATTGTGGCCAAGAGAAAGAG+GGG | - | chr4_1:26088818-26088837 | Msa0541980:intron | 45.0% | |
| AGAAGCTGCACCAACAATTG+TGG | - | chr4_1:26088883-26088902 | Msa0541980:intron | 45.0% | |
| CGTTGGAAAACAAAACGCAG+AGG | - | chr4_1:26088949-26088968 | Msa0541980:intron | 45.0% | |
| ATATGAACCCGGATTCCCTA+CGG | - | chr4_1:26088273-26088292 | Msa0541980:CDS | 45.0% | |
| TTGAATGACCGTAGGGAATC+CGG | + | chr4_1:26088284-26088303 | None:intergenic | 45.0% | |
| GCTTGCATTGAATGACCGTA+GGG | + | chr4_1:26088291-26088310 | None:intergenic | 45.0% | |
| TGCTTGCATTGAATGACCGT+AGG | + | chr4_1:26088292-26088311 | None:intergenic | 45.0% | |
| GTCATTCAATGCAAGCAGAC+AGG | - | chr4_1:26088295-26088314 | Msa0541980:CDS | 45.0% | |
| GATCATCCAATCGAGATGGA+CGG | + | chr4_1:26088371-26088390 | None:intergenic | 45.0% | |
| TCGTGATCATCCAATCGAGA+TGG | + | chr4_1:26088375-26088394 | None:intergenic | 45.0% | |
| TATGCTCTTCGAGTGAGAAG+TGG | - | chr4_1:26088591-26088610 | Msa0541980:intron | 45.0% | |
| ATGCTCTTCGAGTGAGAAGT+GGG | - | chr4_1:26088592-26088611 | Msa0541980:intron | 45.0% | |
| AGTGGGACTTGAAGAGTTCT+TGG | - | chr4_1:26088691-26088710 | Msa0541980:intron | 45.0% | |
| CTTTCTCTTGGCCACAATTG+GGG | + | chr4_1:26088816-26088835 | None:intergenic | 45.0% | |
| CTCTTTCTCTTGGCCACAAT+TGG | + | chr4_1:26088818-26088837 | None:intergenic | 45.0% | |
| CAATTGTGGCCAAGAGAAAG+AGG | - | chr4_1:26088816-26088835 | Msa0541980:intron | 45.0% | |
| ATTGTGGCCAAGAGAAAGAG+GGG | - | chr4_1:26088818-26088837 | Msa0541980:intron | 45.0% | |
| AGAAGCTGCACCAACAATTG+TGG | - | chr4_1:26088883-26088902 | Msa0541980:intron | 45.0% | |
| CGTTGGAAAACAAAACGCAG+AGG | - | chr4_1:26088949-26088968 | Msa0541980:intron | 45.0% | |
| AGGCTTCAACACCAAGTGCA+TGG | - | chr4_1:26088027-26088046 | Msa0541980:CDS | 50.0% | |
| TGAATGACCGTAGGGAATCC+GGG | + | chr4_1:26088283-26088302 | None:intergenic | 50.0% | |
| TTTGGACCGTCCATCTCGAT+TGG | - | chr4_1:26088362-26088381 | Msa0541980:CDS | 50.0% | |
| GTGAATGCTTGCAGTCTGCA+GGG | - | chr4_1:26088410-26088429 | Msa0541980:CDS | 50.0% | |
| AGTTGTTGCAGCCCCAATTG+TGG | - | chr4_1:26088802-26088821 | Msa0541980:intron | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | + | chr4_1:26088828-26088847 | None:intergenic | 50.0% | |
| AGGCTTCAACACCAAGTGCA+TGG | - | chr4_1:26088027-26088046 | Msa0541980:CDS | 50.0% | |
| TGAATGACCGTAGGGAATCC+GGG | + | chr4_1:26088283-26088302 | None:intergenic | 50.0% | |
| TTTGGACCGTCCATCTCGAT+TGG | - | chr4_1:26088362-26088381 | Msa0541980:CDS | 50.0% | |
| GTGAATGCTTGCAGTCTGCA+GGG | - | chr4_1:26088410-26088429 | Msa0541980:CDS | 50.0% | |
| AGTTGTTGCAGCCCCAATTG+TGG | - | chr4_1:26088802-26088821 | Msa0541980:intron | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | + | chr4_1:26088828-26088847 | None:intergenic | 50.0% | |
| CGTGAATGCTTGCAGTCTGC+AGG | - | chr4_1:26088409-26088428 | Msa0541980:CDS | 55.0% | |
| CAGTCTGCAGGGAATTCGAC+TGG | - | chr4_1:26088421-26088440 | Msa0541980:CDS | 55.0% | |
| CGTGAATGCTTGCAGTCTGC+AGG | - | chr4_1:26088409-26088428 | Msa0541980:CDS | 55.0% | |
| CAGTCTGCAGGGAATTCGAC+TGG | - | chr4_1:26088421-26088440 | Msa0541980:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 26087977 | 26089048 | 26087977 | ID=Msa0541980;Name=Msa0541980 |
| chr4_1 | mRNA | 26087977 | 26089048 | 26087977 | ID=Msa0541980-mRNA-1;Parent=Msa0541980;Name=Msa0541980-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|2|0|198 |
| chr4_1 | exon | 26088977 | 26089048 | 26088977 | ID=Msa0541980-mRNA-1:exon:7115;Parent=Msa0541980-mRNA-1 |
| chr4_1 | exon | 26087977 | 26088501 | 26087977 | ID=Msa0541980-mRNA-1:exon:7114;Parent=Msa0541980-mRNA-1 |
| chr4_1 | CDS | 26088977 | 26089048 | 26088977 | ID=Msa0541980-mRNA-1:cds;Parent=Msa0541980-mRNA-1 |
| chr4_1 | CDS | 26087977 | 26088501 | 26087977 | ID=Msa0541980-mRNA-1:cds;Parent=Msa0541980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
