AlfalfaGEDB | Msa0541980

M. sativa cultivar zhongmu-4 / Msa0541980

KEGG: -
GO: GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541980	XP_003606841.1	89.899	198	20	0	1	198	1	198	1.85e-124	359

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541980	sp\|Q9FK61\|Y5809_ARATH	28.671	143	97	4	4	144	11	150	9.93e-12	65.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541980	G7JEY0	89.899	198	20	0	1	198	1	198	8.83e-125	359

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0541980	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0541980	Msa0604730	0.848832	4.767675e-60	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541980	MtrunA17_Chr4g0033951	89.899	198	20	0	1	198	1	198	1.70e-128	359
Msa0541980	MtrunA17_Chr4g0033941	54.487	156	50	6	44	180	1	154	1.89e-37	129

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541980	AT5G18090.1	28.671	143	97	4	4	144	11	150	1.01e-12	65.9
Msa0541980	AT5G18000.1	31.132	106	72	1	4	108	13	118	2.16e-12	64.7
Msa0541980	AT3G17010.1	28.402	169	108	5	4	164	14	177	1.96e-11	62.0

Showing 1 to 3 of 3 entries

Previous1Next

Find 41 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAACAGAAAGAGGAGC+AGG	0.548640	4_1:+26087987	None:intergenic
AAATCCATAACAATCTTCGG+TGG	0.712870	4_1:+26088473	None:intergenic
AATCCAAAGAGAGTATGCGT+TGG	0.611249	4_1:-26088071	Msa0541980:CDS
AATTGTGGCCAAGAGAAAGA+GGG	0.618437	4_1:-26088186	Msa0541980:CDS
AATTGTGGCTAAGACAAAGA+TGG	0.585870	4_1:-26088105	Msa0541980:CDS
ACCAACAATTGTGACAAAGA+AGG	0.484661	4_1:-26088027	Msa0541980:CDS
ACCGAAGATTGTTATGGATT+TGG	0.260147	4_1:-26088471	Msa0541980:CDS
AGAAGCTGCACCAACAATTG+TGG	0.589864	4_1:-26088120	Msa0541980:CDS
AGGCTTCAACACCAAGTGCA+TGG	0.605306	4_1:-26088976	Msa0541980:intron
AGTACCACCGAAGATTGTTA+TGG	0.409721	4_1:-26088477	Msa0541980:CDS

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TATTGGAGATAACATGTTCA+AGG	-	chr4_1:26088724-26088743	Msa0541980:intron	30.0%
ATGTTCAAGGTGGAAATTTA+TGG	-	chr4_1:26088737-26088756	Msa0541980:intron	30.0%
GTGGAAATTTATGGTAAGAA+TGG	-	chr4_1:26088746-26088765	Msa0541980:intron	30.0%
TATTGGAGATAACATGTTCA+AGG	-	chr4_1:26088724-26088743	Msa0541980:intron	30.0%
ATGTTCAAGGTGGAAATTTA+TGG	-	chr4_1:26088737-26088756	Msa0541980:intron	30.0%
GTGGAAATTTATGGTAAGAA+TGG	-	chr4_1:26088746-26088765	Msa0541980:intron	30.0%
CAAATGAATTACCATGCACT+TGG	+	chr4_1:26088041-26088060	None:intergenic	35.0%
GAGAAATACCTGTCTTTCTT+TGG	-	chr4_1:26088114-26088133	Msa0541980:CDS	35.0%
AAATCCATAACAATCTTCGG+TGG	+	chr4_1:26088533-26088552	None:intergenic	35.0%
ACCGAAGATTGTTATGGATT+TGG	-	chr4_1:26088532-26088551	Msa0541980:intron	35.0%

Showing 1 to 10 of 142 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	26087977	26089048	26087977	ID=Msa0541980;Name=Msa0541980
chr4_1	mRNA	26087977	26089048	26087977	ID=Msa0541980-mRNA-1;Parent=Msa0541980;Name=Msa0541980-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|0\|0\|1\|1\|1\|2\|0\|198
chr4_1	exon	26088977	26089048	26088977	ID=Msa0541980-mRNA-1:exon:7115;Parent=Msa0541980-mRNA-1
chr4_1	exon	26087977	26088501	26087977	ID=Msa0541980-mRNA-1:exon:7114;Parent=Msa0541980-mRNA-1
chr4_1	CDS	26088977	26089048	26088977	ID=Msa0541980-mRNA-1:cds;Parent=Msa0541980-mRNA-1
chr4_1	CDS	26087977	26088501	26087977	ID=Msa0541980-mRNA-1:cds;Parent=Msa0541980-mRNA-1

Gene Sequence

>Msa0541980

ATGGATCATGAGCAGCAAGACAAGCCATCCTTTTTCGCTATCATCAAAGAAGGCTTCAACACCAAGTGCATGAAAGTACCACCGAAGATTGTTATGGATTTGGGTGAAGAGTTTTGGAAGAAAGCATCAATTATTCTGGTATGCTCTTCGAGTGAGAAGTGGGAAGTTAAAATTTTGAAGAAAGGAAATGACATTTATCTGCGAAACATTGGTTGGCAAAAGTTTCTGAAAGACAACTCAGTGGGACTTGAAGAGTTCTTGGTTTTCACATATATTGGAGATAACATGTTCAAGGTGGAAATTTATGGTAAGAATGGGTTAGAGAAACCATGCTTCAAGAAAAAGCAAGAAGTTGTTGCAGCCCCAATTGTGGCCAAGAGAAAGAGGGGTAGACCAAGAAAAAATCCTGCTGATGTCAAGGAAGAAAAAGAAGAAGCTGCACCAACAATTGTGGCTAAGACAAAGATGGTACAAAGAAAAAATCCAAAGAGAGTATGCGTTGGAAAACAAAACGCAGAGGTTTCACCAACAATTGTGACAAAGAAGGGTATATCAAGAAAATGTCCTGCTCCTCTTTCTGTTATTTTAGTAGACTGA

Protein sequence

>Msa0541980

MDHEQQDKPSFFAIIKEGFNTKCMKVPPKIVMDLGEEFWKKASIILVCSSSEKWEVKILKKGNDIYLRNIGWQKFLKDNSVGLEEFLVFTYIGDNMFKVEIYGKNGLEKPCFKKKQEVVAAPIVAKRKRGRPRKNPADVKEEKEEAAPTIVAKTKMVQRKNPKRVCVGKQNAEVSPTIVTKKGISRKCPAPLSVILVD*