Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604730 | XP_003606841.1 | 89.899 | 198 | 20 | 0 | 1 | 198 | 1 | 198 | 1.85e-124 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604730 | sp|Q9FK61|Y5809_ARATH | 28.671 | 143 | 97 | 4 | 4 | 144 | 11 | 150 | 9.93e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604730 | G7JEY0 | 89.899 | 198 | 20 | 0 | 1 | 198 | 1 | 198 | 8.83e-125 | 359 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0604730 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0541980 | Msa0604730 | 0.848832 | 4.767675e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604730 | MtrunA17_Chr4g0033951 | 89.899 | 198 | 20 | 0 | 1 | 198 | 1 | 198 | 1.70e-128 | 359 |
| Msa0604730 | MtrunA17_Chr4g0033941 | 54.487 | 156 | 50 | 6 | 44 | 180 | 1 | 154 | 1.89e-37 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604730 | AT5G18090.1 | 28.671 | 143 | 97 | 4 | 4 | 144 | 11 | 150 | 1.01e-12 | 65.9 |
| Msa0604730 | AT5G18000.1 | 31.132 | 106 | 72 | 1 | 4 | 108 | 13 | 118 | 2.16e-12 | 64.7 |
| Msa0604730 | AT3G17010.1 | 28.402 | 169 | 108 | 5 | 4 | 164 | 14 | 177 | 1.96e-11 | 62.0 |
Find 41 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCTCTTGGCCACAAT+TGG | 0.131130 | 4_2:-50350489 | None:intergenic |
| ATGTTCAAGGTGGAAATTTA+TGG | 0.176554 | 4_2:+50350411 | Msa0604730:CDS |
| ACCGAAGATTGTTATGGATT+TGG | 0.260147 | 4_2:+50350206 | Msa0604730:CDS |
| GAAGAAAGCATCAATTATTC+TGG | 0.262336 | 4_2:+50350242 | Msa0604730:CDS |
| TGGATTTGGGTGAAGAGTTT+TGG | 0.266007 | 4_2:+50350220 | Msa0604730:CDS |
| TTCTTTGATGATAGCGAAAA+AGG | 0.271206 | 4_2:-50349671 | None:intergenic |
| CCGAAGATTGTTATGGATTT+GGG | 0.289825 | 4_2:+50350207 | Msa0604730:CDS |
| AGTGGGACTTGAAGAGTTCT+TGG | 0.304248 | 4_2:+50350365 | Msa0604730:CDS |
| TTTCCAACGCATACTCTCTT+TGG | 0.308501 | 4_2:-50350609 | None:intergenic |
| CCCTTCTTTGTCACAATTGT+TGG | 0.332631 | 4_2:-50350651 | None:intergenic |
| TCTTTCTCTTGGCCACAATT+GGG | 0.346000 | 4_2:-50350488 | None:intergenic |
| GTGGAAATTTATGGTAAGAA+TGG | 0.371009 | 4_2:+50350420 | Msa0604730:CDS |
| TTTGTCTTAGCCACAATTGT+TGG | 0.398096 | 4_2:-50350567 | None:intergenic |
| TGGTCTACCCCTCTTTCTCT+TGG | 0.402146 | 4_2:-50350499 | None:intergenic |
| AGTACCACCGAAGATTGTTA+TGG | 0.409721 | 4_2:+50350200 | Msa0604730:CDS |
| TGGAAATTTATGGTAAGAAT+GGG | 0.420098 | 4_2:+50350421 | Msa0604730:CDS |
| CTTTCTCTTGGCCACAATTG+GGG | 0.448018 | 4_2:-50350487 | None:intergenic |
| CCCAAATCCATAACAATCTT+CGG | 0.452160 | 4_2:-50350207 | None:intergenic |
| GACATTTATCTGCGAAACAT+TGG | 0.475455 | 4_2:+50350315 | Msa0604730:CDS |
| ACCAACAATTGTGACAAAGA+AGG | 0.484661 | 4_2:+50350650 | Msa0604730:CDS |
| TCTACTAAAATAACAGAAAG+AGG | 0.490912 | 4_2:-50350696 | None:intergenic |
| CAATTGTGGCCAAGAGAAAG+AGG | 0.520539 | 4_2:+50350490 | Msa0604730:CDS |
| CCAACAATTGTGACAAAGAA+GGG | 0.536191 | 4_2:+50350651 | Msa0604730:CDS |
| TATTGGAGATAACATGTTCA+AGG | 0.538893 | 4_2:+50350398 | Msa0604730:CDS |
| AAAATAACAGAAAGAGGAGC+AGG | 0.548640 | 4_2:-50350690 | None:intergenic |
| TTTATCTGCGAAACATTGGT+TGG | 0.556011 | 4_2:+50350319 | Msa0604730:CDS |
| AGTTGTTGCAGCCCCAATTG+TGG | 0.571592 | 4_2:+50350476 | Msa0604730:CDS |
| AATTGTGGCTAAGACAAAGA+TGG | 0.585870 | 4_2:+50350572 | Msa0604730:CDS |
| AGAAGCTGCACCAACAATTG+TGG | 0.589864 | 4_2:+50350557 | Msa0604730:CDS |
| CAAATGAATTACCATGCACT+TGG | 0.596053 | 4_2:-50349704 | None:intergenic |
| TATGCTCTTCGAGTGAGAAG+TGG | 0.604662 | 4_2:+50350265 | Msa0604730:CDS |
| AGGCTTCAACACCAAGTGCA+TGG | 0.605306 | 4_2:+50349693 | Msa0604730:CDS |
| ATGCTCTTCGAGTGAGAAGT+GGG | 0.605893 | 4_2:+50350266 | Msa0604730:CDS |
| TTTCTGAAAGACAACTCAGT+GGG | 0.610997 | 4_2:+50350348 | Msa0604730:CDS |
| AATCCAAAGAGAGTATGCGT+TGG | 0.611249 | 4_2:+50350606 | Msa0604730:CDS |
| AATTGTGGCCAAGAGAAAGA+GGG | 0.618437 | 4_2:+50350491 | Msa0604730:CDS |
| TGGAGATAACATGTTCAAGG+TGG | 0.674338 | 4_2:+50350401 | Msa0604730:CDS |
| CGTTGGAAAACAAAACGCAG+AGG | 0.680803 | 4_2:+50350623 | Msa0604730:CDS |
| ATTGTGGCCAAGAGAAAGAG+GGG | 0.688040 | 4_2:+50350492 | Msa0604730:CDS |
| AAATCCATAACAATCTTCGG+TGG | 0.712870 | 4_2:-50350204 | None:intergenic |
| GTTTCTGAAAGACAACTCAG+TGG | 0.730659 | 4_2:+50350347 | Msa0604730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATAATATGTTTACTTTTT+TGG | + | chr4_2:50350010-50350029 | Msa0604730:intron | 15.0% |
| !!! | CAATAATATGTTTACTTTTT+TGG | + | chr4_2:50350010-50350029 | Msa0604730:intron | 15.0% |
| !! | TAGAAAAATGTTATTAAGCT+AGG | + | chr4_2:50349850-50349869 | Msa0604730:intron | 20.0% |
| !! | TATATATGTATAATCTCTGT+TGG | - | chr4_2:50349922-50349941 | None:intergenic | 20.0% |
| !! | ATTATACATATATATGAACC+CGG | + | chr4_2:50349928-50349947 | Msa0604730:intron | 20.0% |
| !!! | GAAGTTAAAATTTTGAAGAA+AGG | + | chr4_2:50350288-50350307 | Msa0604730:CDS | 20.0% |
| !! | TAGAAAAATGTTATTAAGCT+AGG | + | chr4_2:50349850-50349869 | Msa0604730:intron | 20.0% |
| !! | TATATATGTATAATCTCTGT+TGG | - | chr4_2:50349922-50349941 | None:intergenic | 20.0% |
| !! | ATTATACATATATATGAACC+CGG | + | chr4_2:50349928-50349947 | Msa0604730:intron | 20.0% |
| !!! | GAAGTTAAAATTTTGAAGAA+AGG | + | chr4_2:50350288-50350307 | Msa0604730:CDS | 20.0% |
| !!! | TACTGAATGAGTTTTAAACT+TGG | - | chr4_2:50349887-50349906 | None:intergenic | 25.0% |
| ! | ATATTATTGAGCTTGATATC+TGG | - | chr4_2:50349999-50350018 | None:intergenic | 25.0% |
| !!! | TTCTTGGTTTTCACATATAT+TGG | + | chr4_2:50350381-50350400 | Msa0604730:CDS | 25.0% |
| ! | TGGAAATTTATGGTAAGAAT+GGG | + | chr4_2:50350421-50350440 | Msa0604730:CDS | 25.0% |
| ! | TCTACTAAAATAACAGAAAG+AGG | - | chr4_2:50350699-50350718 | None:intergenic | 25.0% |
| !!! | TACTGAATGAGTTTTAAACT+TGG | - | chr4_2:50349887-50349906 | None:intergenic | 25.0% |
| ! | ATATTATTGAGCTTGATATC+TGG | - | chr4_2:50349999-50350018 | None:intergenic | 25.0% |
| !!! | TTCTTGGTTTTCACATATAT+TGG | + | chr4_2:50350381-50350400 | Msa0604730:CDS | 25.0% |
| ! | TGGAAATTTATGGTAAGAAT+GGG | + | chr4_2:50350421-50350440 | Msa0604730:CDS | 25.0% |
| ! | TCTACTAAAATAACAGAAAG+AGG | - | chr4_2:50350699-50350718 | None:intergenic | 25.0% |
| ! | TTCTTTGATGATAGCGAAAA+AGG | - | chr4_2:50349674-50349693 | None:intergenic | 30.0% |
| ! | TTTTTCGCTATCATCAAAGA+AGG | + | chr4_2:50349673-50349692 | Msa0604730:CDS | 30.0% |
| !! | GAAGAAAGCATCAATTATTC+TGG | + | chr4_2:50350242-50350261 | Msa0604730:CDS | 30.0% |
| TATTGGAGATAACATGTTCA+AGG | + | chr4_2:50350398-50350417 | Msa0604730:CDS | 30.0% | |
| ATGTTCAAGGTGGAAATTTA+TGG | + | chr4_2:50350411-50350430 | Msa0604730:CDS | 30.0% | |
| GTGGAAATTTATGGTAAGAA+TGG | + | chr4_2:50350420-50350439 | Msa0604730:CDS | 30.0% | |
| ! | TTCTTTGATGATAGCGAAAA+AGG | - | chr4_2:50349674-50349693 | None:intergenic | 30.0% |
| ! | TTTTTCGCTATCATCAAAGA+AGG | + | chr4_2:50349673-50349692 | Msa0604730:CDS | 30.0% |
| !! | GAAGAAAGCATCAATTATTC+TGG | + | chr4_2:50350242-50350261 | Msa0604730:CDS | 30.0% |
| TATTGGAGATAACATGTTCA+AGG | + | chr4_2:50350398-50350417 | Msa0604730:CDS | 30.0% | |
| ATGTTCAAGGTGGAAATTTA+TGG | + | chr4_2:50350411-50350430 | Msa0604730:CDS | 30.0% | |
| GTGGAAATTTATGGTAAGAA+TGG | + | chr4_2:50350420-50350439 | Msa0604730:CDS | 30.0% | |
| ! | TTGATGATAGCGAAAAAGGA+TGG | - | chr4_2:50349670-50349689 | None:intergenic | 35.0% |
| CAAATGAATTACCATGCACT+TGG | - | chr4_2:50349707-50349726 | None:intergenic | 35.0% | |
| GAGAAATACCTGTCTTTCTT+TGG | + | chr4_2:50349780-50349799 | Msa0604730:intron | 35.0% | |
| AAATCCATAACAATCTTCGG+TGG | - | chr4_2:50350207-50350226 | None:intergenic | 35.0% | |
| ACCGAAGATTGTTATGGATT+TGG | + | chr4_2:50350206-50350225 | Msa0604730:CDS | 35.0% | |
| CCCAAATCCATAACAATCTT+CGG | - | chr4_2:50350210-50350229 | None:intergenic | 35.0% | |
| CCGAAGATTGTTATGGATTT+GGG | + | chr4_2:50350207-50350226 | Msa0604730:CDS | 35.0% | |
| GACATTTATCTGCGAAACAT+TGG | + | chr4_2:50350315-50350334 | Msa0604730:CDS | 35.0% | |
| TTTATCTGCGAAACATTGGT+TGG | + | chr4_2:50350319-50350338 | Msa0604730:CDS | 35.0% | |
| ! | TTTCTGAAAGACAACTCAGT+GGG | + | chr4_2:50350348-50350367 | Msa0604730:CDS | 35.0% |
| !!! | TCTTGCTTTTTCTTGAAGCA+TGG | - | chr4_2:50350456-50350475 | None:intergenic | 35.0% |
| !!! | ACATCAGCAGGATTTTTTCT+TGG | - | chr4_2:50350522-50350541 | None:intergenic | 35.0% |
| AAAAAATCCTGCTGATGTCA+AGG | + | chr4_2:50350524-50350543 | Msa0604730:CDS | 35.0% | |
| TTTGTCTTAGCCACAATTGT+TGG | - | chr4_2:50350570-50350589 | None:intergenic | 35.0% | |
| AATTGTGGCTAAGACAAAGA+TGG | + | chr4_2:50350572-50350591 | Msa0604730:CDS | 35.0% | |
| ACCAACAATTGTGACAAAGA+AGG | + | chr4_2:50350650-50350669 | Msa0604730:CDS | 35.0% | |
| CCAACAATTGTGACAAAGAA+GGG | + | chr4_2:50350651-50350670 | Msa0604730:CDS | 35.0% | |
| AAAATAACAGAAAGAGGAGC+AGG | - | chr4_2:50350693-50350712 | None:intergenic | 35.0% | |
| ! | TTGATGATAGCGAAAAAGGA+TGG | - | chr4_2:50349670-50349689 | None:intergenic | 35.0% |
| CAAATGAATTACCATGCACT+TGG | - | chr4_2:50349707-50349726 | None:intergenic | 35.0% | |
| GAGAAATACCTGTCTTTCTT+TGG | + | chr4_2:50349780-50349799 | Msa0604730:intron | 35.0% | |
| AAATCCATAACAATCTTCGG+TGG | - | chr4_2:50350207-50350226 | None:intergenic | 35.0% | |
| ACCGAAGATTGTTATGGATT+TGG | + | chr4_2:50350206-50350225 | Msa0604730:CDS | 35.0% | |
| CCCAAATCCATAACAATCTT+CGG | - | chr4_2:50350210-50350229 | None:intergenic | 35.0% | |
| CCGAAGATTGTTATGGATTT+GGG | + | chr4_2:50350207-50350226 | Msa0604730:CDS | 35.0% | |
| GACATTTATCTGCGAAACAT+TGG | + | chr4_2:50350315-50350334 | Msa0604730:CDS | 35.0% | |
| TTTATCTGCGAAACATTGGT+TGG | + | chr4_2:50350319-50350338 | Msa0604730:CDS | 35.0% | |
| ! | TTTCTGAAAGACAACTCAGT+GGG | + | chr4_2:50350348-50350367 | Msa0604730:CDS | 35.0% |
| !!! | TCTTGCTTTTTCTTGAAGCA+TGG | - | chr4_2:50350456-50350475 | None:intergenic | 35.0% |
| !!! | ACATCAGCAGGATTTTTTCT+TGG | - | chr4_2:50350522-50350541 | None:intergenic | 35.0% |
| AAAAAATCCTGCTGATGTCA+AGG | + | chr4_2:50350524-50350543 | Msa0604730:CDS | 35.0% | |
| TTTGTCTTAGCCACAATTGT+TGG | - | chr4_2:50350570-50350589 | None:intergenic | 35.0% | |
| AATTGTGGCTAAGACAAAGA+TGG | + | chr4_2:50350572-50350591 | Msa0604730:CDS | 35.0% | |
| ACCAACAATTGTGACAAAGA+AGG | + | chr4_2:50350650-50350669 | Msa0604730:CDS | 35.0% | |
| CCAACAATTGTGACAAAGAA+GGG | + | chr4_2:50350651-50350670 | Msa0604730:CDS | 35.0% | |
| AAAATAACAGAAAGAGGAGC+AGG | - | chr4_2:50350693-50350712 | None:intergenic | 35.0% | |
| ATCAGCATCCAAAGAAAGAC+AGG | - | chr4_2:50349791-50349810 | None:intergenic | 40.0% | |
| ! | TAATCTCTGTTGGTGAGCTA+AGG | - | chr4_2:50349912-50349931 | None:intergenic | 40.0% |
| AGTACCACCGAAGATTGTTA+TGG | + | chr4_2:50350200-50350219 | Msa0604730:CDS | 40.0% | |
| ! | TGGATTTGGGTGAAGAGTTT+TGG | + | chr4_2:50350220-50350239 | Msa0604730:CDS | 40.0% |
| ! | GTTTCTGAAAGACAACTCAG+TGG | + | chr4_2:50350347-50350366 | Msa0604730:CDS | 40.0% |
| TGGAGATAACATGTTCAAGG+TGG | + | chr4_2:50350401-50350420 | Msa0604730:CDS | 40.0% | |
| TCTTTCTCTTGGCCACAATT+GGG | - | chr4_2:50350491-50350510 | None:intergenic | 40.0% | |
| AATTGTGGCCAAGAGAAAGA+GGG | + | chr4_2:50350491-50350510 | Msa0604730:CDS | 40.0% | |
| ! | TTTTCTTCCTTGACATCAGC+AGG | - | chr4_2:50350534-50350553 | None:intergenic | 40.0% |
| ! | AATCCAAAGAGAGTATGCGT+TGG | + | chr4_2:50350606-50350625 | Msa0604730:CDS | 40.0% |
| TTTCCAACGCATACTCTCTT+TGG | - | chr4_2:50350612-50350631 | None:intergenic | 40.0% | |
| CCCTTCTTTGTCACAATTGT+TGG | - | chr4_2:50350654-50350673 | None:intergenic | 40.0% | |
| ATCAGCATCCAAAGAAAGAC+AGG | - | chr4_2:50349791-50349810 | None:intergenic | 40.0% | |
| ! | TAATCTCTGTTGGTGAGCTA+AGG | - | chr4_2:50349912-50349931 | None:intergenic | 40.0% |
| AGTACCACCGAAGATTGTTA+TGG | + | chr4_2:50350200-50350219 | Msa0604730:CDS | 40.0% | |
| ! | TGGATTTGGGTGAAGAGTTT+TGG | + | chr4_2:50350220-50350239 | Msa0604730:CDS | 40.0% |
| ! | GTTTCTGAAAGACAACTCAG+TGG | + | chr4_2:50350347-50350366 | Msa0604730:CDS | 40.0% |
| TGGAGATAACATGTTCAAGG+TGG | + | chr4_2:50350401-50350420 | Msa0604730:CDS | 40.0% | |
| TCTTTCTCTTGGCCACAATT+GGG | - | chr4_2:50350491-50350510 | None:intergenic | 40.0% | |
| AATTGTGGCCAAGAGAAAGA+GGG | + | chr4_2:50350491-50350510 | Msa0604730:CDS | 40.0% | |
| ! | TTTTCTTCCTTGACATCAGC+AGG | - | chr4_2:50350534-50350553 | None:intergenic | 40.0% |
| ! | AATCCAAAGAGAGTATGCGT+TGG | + | chr4_2:50350606-50350625 | Msa0604730:CDS | 40.0% |
| TTTCCAACGCATACTCTCTT+TGG | - | chr4_2:50350612-50350631 | None:intergenic | 40.0% | |
| CCCTTCTTTGTCACAATTGT+TGG | - | chr4_2:50350654-50350673 | None:intergenic | 40.0% | |
| ATATGAACCCGGATTCCCTA+CGG | + | chr4_2:50349939-50349958 | Msa0604730:intron | 45.0% | |
| TTGAATGACCGTAGGGAATC+CGG | - | chr4_2:50349950-50349969 | None:intergenic | 45.0% | |
| GCTTGCATTGAATGACCGTA+GGG | - | chr4_2:50349957-50349976 | None:intergenic | 45.0% | |
| TGCTTGCATTGAATGACCGT+AGG | - | chr4_2:50349958-50349977 | None:intergenic | 45.0% | |
| GTCATTCAATGCAAGCAGAC+AGG | + | chr4_2:50349961-50349980 | Msa0604730:intron | 45.0% | |
| GATCATCCAATCGAGATGGA+CGG | - | chr4_2:50350037-50350056 | None:intergenic | 45.0% | |
| TCGTGATCATCCAATCGAGA+TGG | - | chr4_2:50350041-50350060 | None:intergenic | 45.0% | |
| TATGCTCTTCGAGTGAGAAG+TGG | + | chr4_2:50350265-50350284 | Msa0604730:CDS | 45.0% | |
| ATGCTCTTCGAGTGAGAAGT+GGG | + | chr4_2:50350266-50350285 | Msa0604730:CDS | 45.0% | |
| AGTGGGACTTGAAGAGTTCT+TGG | + | chr4_2:50350365-50350384 | Msa0604730:CDS | 45.0% | |
| CTTTCTCTTGGCCACAATTG+GGG | - | chr4_2:50350490-50350509 | None:intergenic | 45.0% | |
| CTCTTTCTCTTGGCCACAAT+TGG | - | chr4_2:50350492-50350511 | None:intergenic | 45.0% | |
| CAATTGTGGCCAAGAGAAAG+AGG | + | chr4_2:50350490-50350509 | Msa0604730:CDS | 45.0% | |
| ATTGTGGCCAAGAGAAAGAG+GGG | + | chr4_2:50350492-50350511 | Msa0604730:CDS | 45.0% | |
| AGAAGCTGCACCAACAATTG+TGG | + | chr4_2:50350557-50350576 | Msa0604730:CDS | 45.0% | |
| CGTTGGAAAACAAAACGCAG+AGG | + | chr4_2:50350623-50350642 | Msa0604730:CDS | 45.0% | |
| ATATGAACCCGGATTCCCTA+CGG | + | chr4_2:50349939-50349958 | Msa0604730:intron | 45.0% | |
| TTGAATGACCGTAGGGAATC+CGG | - | chr4_2:50349950-50349969 | None:intergenic | 45.0% | |
| GCTTGCATTGAATGACCGTA+GGG | - | chr4_2:50349957-50349976 | None:intergenic | 45.0% | |
| TGCTTGCATTGAATGACCGT+AGG | - | chr4_2:50349958-50349977 | None:intergenic | 45.0% | |
| GTCATTCAATGCAAGCAGAC+AGG | + | chr4_2:50349961-50349980 | Msa0604730:intron | 45.0% | |
| GATCATCCAATCGAGATGGA+CGG | - | chr4_2:50350037-50350056 | None:intergenic | 45.0% | |
| TCGTGATCATCCAATCGAGA+TGG | - | chr4_2:50350041-50350060 | None:intergenic | 45.0% | |
| TATGCTCTTCGAGTGAGAAG+TGG | + | chr4_2:50350265-50350284 | Msa0604730:CDS | 45.0% | |
| ATGCTCTTCGAGTGAGAAGT+GGG | + | chr4_2:50350266-50350285 | Msa0604730:CDS | 45.0% | |
| AGTGGGACTTGAAGAGTTCT+TGG | + | chr4_2:50350365-50350384 | Msa0604730:CDS | 45.0% | |
| CTTTCTCTTGGCCACAATTG+GGG | - | chr4_2:50350490-50350509 | None:intergenic | 45.0% | |
| CTCTTTCTCTTGGCCACAAT+TGG | - | chr4_2:50350492-50350511 | None:intergenic | 45.0% | |
| CAATTGTGGCCAAGAGAAAG+AGG | + | chr4_2:50350490-50350509 | Msa0604730:CDS | 45.0% | |
| ATTGTGGCCAAGAGAAAGAG+GGG | + | chr4_2:50350492-50350511 | Msa0604730:CDS | 45.0% | |
| AGAAGCTGCACCAACAATTG+TGG | + | chr4_2:50350557-50350576 | Msa0604730:CDS | 45.0% | |
| CGTTGGAAAACAAAACGCAG+AGG | + | chr4_2:50350623-50350642 | Msa0604730:CDS | 45.0% | |
| !! | AAATAAAAAAATAAAAAACA+TGG | - | chr4_2:50350163-50350182 | None:intergenic | 5.0% |
| !! | AAATAAAAAAATAAAAAACA+TGG | - | chr4_2:50350163-50350182 | None:intergenic | 5.0% |
| AGGCTTCAACACCAAGTGCA+TGG | + | chr4_2:50349693-50349712 | Msa0604730:CDS | 50.0% | |
| TGAATGACCGTAGGGAATCC+GGG | - | chr4_2:50349949-50349968 | None:intergenic | 50.0% | |
| TTTGGACCGTCCATCTCGAT+TGG | + | chr4_2:50350028-50350047 | Msa0604730:intron | 50.0% | |
| GTGAATGCTTGCAGTCTGCA+GGG | + | chr4_2:50350076-50350095 | Msa0604730:intron | 50.0% | |
| AGTTGTTGCAGCCCCAATTG+TGG | + | chr4_2:50350476-50350495 | Msa0604730:CDS | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | - | chr4_2:50350502-50350521 | None:intergenic | 50.0% | |
| AGGCTTCAACACCAAGTGCA+TGG | + | chr4_2:50349693-50349712 | Msa0604730:CDS | 50.0% | |
| TGAATGACCGTAGGGAATCC+GGG | - | chr4_2:50349949-50349968 | None:intergenic | 50.0% | |
| TTTGGACCGTCCATCTCGAT+TGG | + | chr4_2:50350028-50350047 | Msa0604730:intron | 50.0% | |
| GTGAATGCTTGCAGTCTGCA+GGG | + | chr4_2:50350076-50350095 | Msa0604730:intron | 50.0% | |
| AGTTGTTGCAGCCCCAATTG+TGG | + | chr4_2:50350476-50350495 | Msa0604730:CDS | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | - | chr4_2:50350502-50350521 | None:intergenic | 50.0% | |
| CGTGAATGCTTGCAGTCTGC+AGG | + | chr4_2:50350075-50350094 | Msa0604730:intron | 55.0% | |
| CAGTCTGCAGGGAATTCGAC+TGG | + | chr4_2:50350087-50350106 | Msa0604730:intron | 55.0% | |
| CGTGAATGCTTGCAGTCTGC+AGG | + | chr4_2:50350075-50350094 | Msa0604730:intron | 55.0% | |
| CAGTCTGCAGGGAATTCGAC+TGG | + | chr4_2:50350087-50350106 | Msa0604730:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 50349643 | 50350722 | 50349643 | ID=Msa0604730;Name=Msa0604730 |
| chr4_2 | mRNA | 50349643 | 50350722 | 50349643 | ID=Msa0604730-mRNA-1;Parent=Msa0604730;Name=Msa0604730-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|2|0|198 |
| chr4_2 | exon | 50349643 | 50349714 | 50349643 | ID=Msa0604730-mRNA-1:exon:11871;Parent=Msa0604730-mRNA-1 |
| chr4_2 | exon | 50350198 | 50350722 | 50350198 | ID=Msa0604730-mRNA-1:exon:11872;Parent=Msa0604730-mRNA-1 |
| chr4_2 | CDS | 50349643 | 50349714 | 50349643 | ID=Msa0604730-mRNA-1:cds;Parent=Msa0604730-mRNA-1 |
| chr4_2 | CDS | 50350198 | 50350722 | 50350198 | ID=Msa0604730-mRNA-1:cds;Parent=Msa0604730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
