Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543430 | XP_039687244.1 | 75.214 | 117 | 19 | 1 | 167 | 273 | 1 | 117 | 6.16e-47 | 168 |
| Msa0543430 | XP_039687244.1 | 90.164 | 61 | 6 | 0 | 106 | 166 | 42 | 102 | 4.05e-25 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543430 | sp|Q8H1G0|GAT28_ARATH | 50.588 | 85 | 41 | 1 | 81 | 164 | 136 | 220 | 5.44e-17 | 84.3 |
| Msa0543430 | sp|Q8H1G0|GAT28_ARATH | 48.780 | 82 | 42 | 0 | 192 | 273 | 156 | 237 | 2.62e-15 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543430 | A0A396HYL3 | 73.043 | 115 | 23 | 1 | 167 | 273 | 1 | 115 | 2.21e-46 | 166 |
| Msa0543430 | A0A396HYL3 | 89.831 | 59 | 6 | 0 | 108 | 166 | 42 | 100 | 2.70e-24 | 107 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0543430 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0543430 | Msa0664340 | 0.814223 | 1.719165e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543430 | MtrunA17_Chr4g0002231 | 73.043 | 115 | 23 | 1 | 167 | 273 | 1 | 115 | 4.25e-50 | 166 |
| Msa0543430 | MtrunA17_Chr4g0002231 | 89.831 | 59 | 6 | 0 | 108 | 166 | 42 | 100 | 5.21e-28 | 107 |
| Msa0543430 | MtrunA17_Chr4g0065421 | 61.111 | 90 | 30 | 1 | 1 | 85 | 1 | 90 | 3.27e-23 | 101 |
| Msa0543430 | MtrunA17_Chr4g0002261 | 55.224 | 67 | 26 | 2 | 67 | 132 | 3 | 66 | 4.68e-13 | 63.9 |
| Msa0543430 | MtrunA17_Chr3g0132761 | 55.556 | 72 | 30 | 1 | 157 | 226 | 104 | 175 | 1.03e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543430 | AT1G51600.1 | 50.588 | 85 | 41 | 1 | 81 | 164 | 136 | 220 | 5.53e-18 | 84.3 |
| Msa0543430 | AT1G51600.1 | 48.780 | 82 | 42 | 0 | 192 | 273 | 156 | 237 | 2.66e-16 | 79.7 |
| Msa0543430 | AT1G51600.2 | 50.588 | 85 | 41 | 1 | 81 | 164 | 136 | 220 | 5.53e-18 | 84.3 |
| Msa0543430 | AT1G51600.2 | 48.780 | 82 | 42 | 0 | 192 | 273 | 156 | 237 | 2.66e-16 | 79.7 |
| Msa0543430 | AT3G21175.3 | 54.286 | 70 | 32 | 0 | 82 | 151 | 132 | 201 | 2.06e-16 | 78.2 |
| Msa0543430 | AT3G21175.3 | 59.615 | 52 | 21 | 0 | 192 | 243 | 150 | 201 | 1.09e-12 | 67.4 |
| Msa0543430 | AT3G21175.1 | 54.286 | 70 | 32 | 0 | 82 | 151 | 134 | 203 | 2.44e-15 | 76.6 |
| Msa0543430 | AT3G21175.1 | 41.463 | 82 | 48 | 0 | 192 | 273 | 152 | 233 | 9.16e-13 | 68.9 |
| Msa0543430 | AT3G21175.2 | 54.286 | 70 | 32 | 0 | 82 | 151 | 132 | 201 | 2.48e-15 | 76.6 |
| Msa0543430 | AT3G21175.2 | 41.463 | 82 | 48 | 0 | 192 | 273 | 150 | 231 | 9.23e-13 | 68.9 |
Find 92 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAAAATAAAGTCTTATT+TGG | 0.119600 | 4_1:-29827952 | Msa0543430:CDS |
| CCTTTATATTATTTGATAAA+TGG | 0.218289 | 4_1:-29827902 | Msa0543430:CDS |
| GAGAAATGGGGTTTCAGTTT+TGG | 0.248316 | 4_1:+29831236 | None:intergenic |
| TGGACTTCTGTGGGCAAATA+AGG | 0.252080 | 4_1:-29827773 | Msa0543430:intron |
| AATTTGGTTTCTTCCGGTTT+TGG | 0.255949 | 4_1:+29831088 | None:intergenic |
| CAGAGGGTTCTTGGCCCTTC+AGG | 0.272302 | 4_1:+29827805 | None:intergenic |
| AATTGAAGAAACAAGAAGTT+AGG | 0.283231 | 4_1:+29831417 | None:intergenic |
| CAAGCATTGCAGAGGGTTCT+TGG | 0.288221 | 4_1:+29827796 | None:intergenic |
| GAAACAAGAAGTTAGGGTTT+TGG | 0.301740 | 4_1:+29831424 | None:intergenic |
| TTTCAACTCATATCAGTTGT+AGG | 0.311609 | 4_1:-29827873 | Msa0543430:CDS |
| GTTGGAGAGTTGGGAGGCTT+TGG | 0.312705 | 4_1:+29831293 | None:intergenic |
| ACCGATGAAGTACAAATAAA+AGG | 0.320192 | 4_1:+29826658 | None:intergenic |
| TTTAGGATGCAAAGAAATAA+AGG | 0.333460 | 4_1:-29828171 | Msa0543430:intron |
| TTTAGGATGCAAAGAAATAA+AGG | 0.333460 | 4_1:-29830584 | Msa0543430:intron |
| TCTGTGAGAAAGTGTAAATT+TGG | 0.338132 | 4_1:+29831134 | None:intergenic |
| GAAATCTAAACCTTTGAAAT+CGG | 0.338857 | 4_1:+29831179 | None:intergenic |
| TGTCAAAATTTGGTTTCTTC+CGG | 0.341377 | 4_1:+29831082 | None:intergenic |
| AACCCTCTTGTTGGAGAGTT+GGG | 0.343568 | 4_1:+29831284 | None:intergenic |
| AAATGTGAAGATGCATAAAC+AGG | 0.357473 | 4_1:+29827410 | None:intergenic |
| TCGACACAACAATGAAATAA+TGG | 0.374080 | 4_1:-29831334 | Msa0543430:CDS |
| CGGAACAAGTGAAGGTTTGA+TGG | 0.376343 | 4_1:-29828091 | Msa0543430:CDS |
| CGGAACAAGTGAAGGTTTGA+TGG | 0.376343 | 4_1:-29830504 | Msa0543430:CDS |
| GGTAATAATAACCCTCTTGT+TGG | 0.387228 | 4_1:+29831275 | None:intergenic |
| ATAAAGGACAATTTCAGTAT+AGG | 0.401817 | 4_1:+29827918 | None:intergenic |
| GGTCTCTGTTCGTCTTGTGC+AGG | 0.415971 | 4_1:-29826638 | Msa0543430:CDS |
| AGTGTAAATTTGGGTGAAGT+AGG | 0.428207 | 4_1:+29831144 | None:intergenic |
| CCATTTATCAAATAATATAA+AGG | 0.430813 | 4_1:+29827902 | None:intergenic |
| TTACACATTATCTTGCTGTT+GGG | 0.431240 | 4_1:+29830466 | None:intergenic |
| CTTACACATTATCCTGCTGT+TGG | 0.456856 | 4_1:+29828052 | None:intergenic |
| CTTACACATTATCTTGCTGT+TGG | 0.457624 | 4_1:+29830465 | None:intergenic |
| ATGAGTGTCTGATGAGAAAT+GGG | 0.462114 | 4_1:+29831223 | None:intergenic |
| AGTAGTGACGATGAGTGTTA+TGG | 0.463165 | 4_1:-29826808 | Msa0543430:CDS |
| AGACTCATCATGGTTGGACT+TGG | 0.463495 | 4_1:+29828134 | None:intergenic |
| TGGACTTGGCAGATGTAAAT+CGG | 0.465549 | 4_1:+29828148 | None:intergenic |
| TGGACTTGGCAGATGTAAAT+CGG | 0.465549 | 4_1:+29830561 | None:intergenic |
| TTTGGATTGAAGTTTGAGTT+CGG | 0.467747 | 4_1:+29831311 | None:intergenic |
| TAACCCTCTTGTTGGAGAGT+TGG | 0.468536 | 4_1:+29831283 | None:intergenic |
| AAATCTAAACCTTTGAAATC+GGG | 0.472424 | 4_1:+29831180 | None:intergenic |
| AATGAGTGTCTGATGAGAAA+TGG | 0.473328 | 4_1:+29831222 | None:intergenic |
| TGGACTTGGTAGATGTAAAT+CGG | 0.473810 | 4_1:+29829436 | None:intergenic |
| ATTGAAGAAACAAGAAGTTA+GGG | 0.476786 | 4_1:+29831418 | None:intergenic |
| TTACACATTATCCTGCTGTT+GGG | 0.481883 | 4_1:+29828053 | None:intergenic |
| AGACTCGTCATGGTTGGACT+TGG | 0.484402 | 4_1:+29830547 | None:intergenic |
| GTCTCTGTTCGTCTTGTGCA+GGG | 0.489393 | 4_1:-29826637 | Msa0543430:CDS |
| AGACTCGTCAAGGTTGGACT+TGG | 0.495334 | 4_1:+29829422 | None:intergenic |
| TCAGGTCCACGCCGCATCGT+TGG | 0.497989 | 4_1:+29827823 | None:intergenic |
| CAGCCGATGCAGACTCATCA+TGG | 0.498772 | 4_1:+29828124 | None:intergenic |
| TTTAGGATGCAAAGAAGTAA+AGG | 0.501385 | 4_1:-29829459 | Msa0543430:intron |
| AATGGGAGGTAGTAGAAGAC+TGG | 0.501501 | 4_1:-29827261 | Msa0543430:CDS |
| CAATGCTTGTGGACTTCTGT+GGG | 0.512002 | 4_1:-29827782 | Msa0543430:CDS |
| GCAATGCTTGTGGACTTCTG+TGG | 0.515681 | 4_1:-29827783 | Msa0543430:CDS |
| CTGTGAGAAAGTGTAAATTT+GGG | 0.521016 | 4_1:+29831135 | None:intergenic |
| GGTATTTCACCCGATTTCAA+AGG | 0.531597 | 4_1:-29831189 | Msa0543430:CDS |
| TTCGTAGAGAGGTAGCATTA+AGG | 0.536977 | 4_1:-29829332 | Msa0543430:intron |
| TTCGTAGAGAGGTAGCATTA+AGG | 0.536977 | 4_1:-29831041 | Msa0543430:intron |
| AGAACCCTCTGCAATGCTTG+TGG | 0.537519 | 4_1:-29827793 | Msa0543430:CDS |
| GAGATGCGAAGAAACAATGA+AGG | 0.538662 | 4_1:+29827443 | None:intergenic |
| AAGACTGGGCGTTCAACCTA+AGG | 0.539804 | 4_1:-29827246 | Msa0543430:intron |
| CCTCTTGTTGGAGAGTTGGG+AGG | 0.541194 | 4_1:+29831287 | None:intergenic |
| ACAATGAAGGAGAAGATGAA+TGG | 0.542144 | 4_1:+29827456 | None:intergenic |
| ACGATGCGGCGTGGACCTGA+AGG | 0.544966 | 4_1:-29827820 | Msa0543430:CDS |
| ATGAATTGCGGAACAAGTGA+AGG | 0.546961 | 4_1:-29828099 | Msa0543430:CDS |
| ATGAATTGCGGAACAAGTGA+AGG | 0.546961 | 4_1:-29830512 | Msa0543430:CDS |
| AATGAGTTGCGAAACGCGGA+AGG | 0.558566 | 4_1:-29829388 | Msa0543430:CDS |
| CAGTCGATGCAGACTCGTCA+TGG | 0.558934 | 4_1:+29830537 | None:intergenic |
| CGATGCAGACTCGTCATGGT+TGG | 0.560227 | 4_1:+29830541 | None:intergenic |
| TCTTCAATTCAATTCAACAA+TGG | 0.562398 | 4_1:-29831403 | Msa0543430:exon |
| TGATGCAGACTCGTCAAGGT+TGG | 0.569658 | 4_1:+29829416 | None:intergenic |
| CAGCTGATGCAGACTCGTCA+AGG | 0.577397 | 4_1:+29829412 | None:intergenic |
| CAACGATGGATCCCAACAGC+AGG | 0.584413 | 4_1:-29828064 | Msa0543430:CDS |
| CGATGCAGACTCATCATGGT+TGG | 0.584481 | 4_1:+29828128 | None:intergenic |
| CTGAAATGAGTTGCGAAACG+CGG | 0.599299 | 4_1:-29829392 | Msa0543430:CDS |
| CAACCATGATGAGTCTGCAT+CGG | 0.601385 | 4_1:-29828127 | Msa0543430:CDS |
| CCTCCCAACTCTCCAACAAG+AGG | 0.610148 | 4_1:-29831287 | Msa0543430:CDS |
| CGATGCGGCGTGGACCTGAA+GGG | 0.610307 | 4_1:-29827819 | Msa0543430:CDS |
| TCGGTATAATGTTCGTAGAG+AGG | 0.616329 | 4_1:-29829343 | Msa0543430:CDS |
| GGTTTGATGGCAGACAATGA+TGG | 0.622019 | 4_1:-29830491 | Msa0543430:CDS |
| AGTTGTAGGCATTGTAACAT+CGG | 0.624202 | 4_1:-29827859 | Msa0543430:CDS |
| ATGGGAGGTAGTAGAAGACT+GGG | 0.636419 | 4_1:-29827260 | Msa0543430:CDS |
| GCATCGGCTGAAATGAATTG+CGG | 0.643791 | 4_1:-29828111 | Msa0543430:CDS |
| TGCACGCCAACGATGCGGCG+TGG | 0.646226 | 4_1:-29827829 | Msa0543430:CDS |
| GCATCGACTGAAATGAATTG+CGG | 0.648527 | 4_1:-29830524 | Msa0543430:CDS |
| CTCCCAACTCTCCAACAAGA+GGG | 0.649113 | 4_1:-29831286 | Msa0543430:CDS |
| GAAGTCCACAAGCATTGCAG+AGG | 0.650799 | 4_1:+29827788 | None:intergenic |
| TCGGTGTAATGTTCGTAGAG+AGG | 0.656453 | 4_1:-29831052 | Msa0543430:CDS |
| AGAAGTGCACGCCAACGATG+CGG | 0.657729 | 4_1:-29827834 | Msa0543430:CDS |
| AAGTCCACAAGCATTGCAGA+GGG | 0.669436 | 4_1:+29827789 | None:intergenic |
| AATGTGAAGATGCATAAACA+GGG | 0.669888 | 4_1:+29827411 | None:intergenic |
| TGAGTGTCTGATGAGAAATG+GGG | 0.715103 | 4_1:+29831224 | None:intergenic |
| GGTTTGATGGCAGACAACGA+TGG | 0.718774 | 4_1:-29828078 | Msa0543430:CDS |
| AGACACTCATTTCGAACACG+CGG | 0.731780 | 4_1:-29831210 | Msa0543430:CDS |
| GATGAAGTACAAATAAAAGG+CGG | 0.732304 | 4_1:+29826661 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATTGTATAAGAAAA+TGG | - | chr4_1:29829554-29829573 | Msa0543430:intron | 10.0% |
| !! | CACATATAATAAAATAACTT+CGG | + | chr4_1:29828538-29828557 | None:intergenic | 15.0% |
| !!! | AAAATTTTGACAAAAAAGTT+CGG | - | chr4_1:29828685-29828704 | Msa0543430:intron | 15.0% |
| !!! | TAAAAACTAAAAGTGTTTTT+AGG | + | chr4_1:29829363-29829382 | None:intergenic | 15.0% |
| !! | CCATTTATCAAATAATATAA+AGG | + | chr4_1:29830148-29830167 | None:intergenic | 15.0% |
| !! | CCTTTATATTATTTGATAAA+TGG | - | chr4_1:29830145-29830164 | Msa0543430:intron | 15.0% |
| !!! | CAAATTTTGACAAAAATGTT+CGG | - | chr4_1:29826976-29826995 | Msa0543430:intron | 20.0% |
| !! | TTGGACATAAAACAAAATAA+TGG | + | chr4_1:29827416-29827435 | None:intergenic | 20.0% |
| !!! | GATAGATATTTGCTTTTAAA+AGG | - | chr4_1:29827865-29827884 | Msa0543430:CDS | 20.0% |
| !! | CAAAGTTATATCATTCTTTA+TGG | + | chr4_1:29828058-29828077 | None:intergenic | 20.0% |
| !! | ATAACTTTGCAAATTTAAAG+TGG | - | chr4_1:29828069-29828088 | Msa0543430:CDS | 20.0% |
| !!! | TAACTTTGCAAATTTAAAGT+GGG | - | chr4_1:29828070-29828089 | Msa0543430:CDS | 20.0% |
| !!! | TTAATTTTGAATTCCTAACA+AGG | - | chr4_1:29828131-29828150 | Msa0543430:CDS | 20.0% |
| !! | TAAGAAATTGTAAACGAAAA+TGG | - | chr4_1:29828256-29828275 | Msa0543430:intron | 20.0% |
| !!! | TGATAGATATTTGTTTCTTT+TGG | - | chr4_1:29829124-29829143 | Msa0543430:intron | 20.0% |
| !!! | GATAGATATTTGTTTCTTTT+GGG | - | chr4_1:29829125-29829144 | Msa0543430:intron | 20.0% |
| !!! | ATAGATATTTGTTTCTTTTG+GGG | - | chr4_1:29829126-29829145 | Msa0543430:intron | 20.0% |
| !! | ACTATATATTGTTTCAGTTT+CGG | - | chr4_1:29829181-29829200 | Msa0543430:intron | 20.0% |
| !! | CAAAGTTATATCATTCTTTA+TGG | + | chr4_1:29828058-29828077 | None:intergenic | 20.0% |
| !! | CATAAAGAATGATATAACTT+TGG | - | chr4_1:29828056-29828075 | Msa0543430:intron | 20.0% |
| !!! | ATAACTTTGGAAATTTAAAG+TGG | - | chr4_1:29829305-29829324 | Msa0543430:intron | 20.0% |
| !!! | TAACTTTGGAAATTTAAAGT+GGG | - | chr4_1:29829306-29829325 | Msa0543430:intron | 20.0% |
| !! | TTAAATTACTAATAAGGAGA+TGG | - | chr4_1:29829405-29829424 | Msa0543430:CDS | 20.0% |
| !! | TAGAAGATTATCATTACATA+TGG | + | chr4_1:29829681-29829700 | None:intergenic | 20.0% |
| !! | CACATAAAACAAAATAATGT+CGG | + | chr4_1:29829826-29829845 | None:intergenic | 20.0% |
| !! | GTATTCTAATCTATATGTTA+TGG | - | chr4_1:29830060-29830079 | Msa0543430:intron | 20.0% |
| !!! | CTTGAAAATAAAGTCTTATT+TGG | - | chr4_1:29830095-29830114 | Msa0543430:intron | 20.0% |
| !! | ATTAACCTGTAATAATTGTA+TGG | + | chr4_1:29830362-29830381 | None:intergenic | 20.0% |
| !! | TATTGACAAAATTAAGAAGT+TGG | - | chr4_1:29830979-29830998 | Msa0543430:intron | 20.0% |
| ! | ATTGAAGAAACAAGAAGTTA+GGG | + | chr4_1:29826632-29826651 | None:intergenic | 25.0% |
| ! | AATTGAAGAAACAAGAAGTT+AGG | + | chr4_1:29826633-29826652 | None:intergenic | 25.0% |
| ! | TCTTCAATTCAATTCAACAA+TGG | - | chr4_1:29826644-29826663 | Msa0543430:CDS | 25.0% |
| !!! | AAATCTAAACCTTTGAAATC+GGG | + | chr4_1:29826870-29826889 | None:intergenic | 25.0% |
| !!! | GAAATCTAAACCTTTGAAAT+CGG | + | chr4_1:29826871-29826890 | None:intergenic | 25.0% |
| !! | CGAACATTTTTGTCAAAATT+TGG | + | chr4_1:29826978-29826997 | None:intergenic | 25.0% |
| ! | ATTAAGGTATGTGTTTGTAT+AGG | - | chr4_1:29827022-29827041 | Msa0543430:intron | 25.0% |
| ! | TTAAGGTATGTGTTTGTATA+GGG | - | chr4_1:29827023-29827042 | Msa0543430:intron | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+TGG | + | chr4_1:29827150-29827169 | None:intergenic | 25.0% |
| ! | GACATAAAACAAAATAATGG+CGG | + | chr4_1:29827413-29827432 | None:intergenic | 25.0% |
| ! | CAAATACAAGTAACTTCTTT+AGG | - | chr4_1:29827446-29827465 | Msa0543430:CDS | 25.0% |
| !! | TTTAGGATGCAAAGAAATAA+AGG | - | chr4_1:29827463-29827482 | Msa0543430:CDS | 25.0% |
| !!! | ACTGGTTTATTTTTGAACAA+GGG | - | chr4_1:29827608-29827627 | Msa0543430:intron | 25.0% |
| !!! | AGATATTTGCTTTTAAAAGG+AGG | - | chr4_1:29827868-29827887 | Msa0543430:CDS | 25.0% |
| ! | ATTTCAGTTCATATTAGTCA+AGG | - | chr4_1:29827961-29827980 | Msa0543430:intron | 25.0% |
| !!! | TATATCAGTTAAGCTTTAGA+TGG | + | chr4_1:29828012-29828031 | None:intergenic | 25.0% |
| ! | ATATCATTCTTTATGGCATA+AGG | + | chr4_1:29828051-29828070 | None:intergenic | 25.0% |
| !! | AACTTTGCAAATTTAAAGTG+GGG | - | chr4_1:29828071-29828090 | Msa0543430:CDS | 25.0% |
| ! | GAGAAGATAAAAAACAAACT+TGG | - | chr4_1:29828190-29828209 | Msa0543430:intron | 25.0% |
| !! | TTTGAAGTAAAAATGTAAGC+AGG | - | chr4_1:29828318-29828337 | Msa0543430:intron | 25.0% |
| ! | GAGAAGATTATCATTACATA+CGG | + | chr4_1:29828396-29828415 | None:intergenic | 25.0% |
| ! | AAAAATAAGCCAATCCAAAA+GGG | + | chr4_1:29828883-29828902 | None:intergenic | 25.0% |
| ! | AAACAAATATCTATCATTGC+AGG | + | chr4_1:29829120-29829139 | None:intergenic | 25.0% |
| !! | AACTTTGGAAATTTAAAGTG+GGG | - | chr4_1:29829307-29829326 | Msa0543430:intron | 25.0% |
| ! | AATTGTATAAGAAAATGGCA+AGG | - | chr4_1:29829559-29829578 | Msa0543430:intron | 25.0% |
| !! | TATCATTACATATGGTGTTA+AGG | + | chr4_1:29829673-29829692 | None:intergenic | 25.0% |
| ! | CAAATACAAGTAACTTCTTT+AGG | - | chr4_1:29827446-29827465 | Msa0543430:CDS | 25.0% |
| !! | TTTAGGATGCAAAGAAATAA+AGG | - | chr4_1:29827463-29827482 | Msa0543430:CDS | 25.0% |
| !!! | ACTGGTTTATTTTTGAACAA+GGG | - | chr4_1:29827608-29827627 | Msa0543430:intron | 25.0% |
| ! | ATAAAGGACAATTTCAGTAT+AGG | + | chr4_1:29830132-29830151 | None:intergenic | 25.0% |
| !! | TTACAGGTTAATCATGATTT+TGG | - | chr4_1:29830370-29830389 | Msa0543430:intron | 25.0% |
| !!! | ATGTTTTTATTAATTCCACC+TGG | - | chr4_1:29830536-29830555 | Msa0543430:CDS | 25.0% |
| ! | TATATGCAAAAGTTGTTAGT+TGG | - | chr4_1:29830825-29830844 | Msa0543430:intron | 25.0% |
| ! | ATATGCAAAAGTTGTTAGTT+GGG | - | chr4_1:29830826-29830845 | Msa0543430:intron | 25.0% |
| !! | TAACAATCCAAGTTAGTTTA+AGG | - | chr4_1:29831101-29831120 | Msa0543430:CDS | 25.0% |
| TCGACACAACAATGAAATAA+TGG | - | chr4_1:29826713-29826732 | Msa0543430:intron | 30.0% | |
| ! | TTTGGATTGAAGTTTGAGTT+CGG | + | chr4_1:29826739-29826758 | None:intergenic | 30.0% |
| !!! | TTTGGGTTTTTTCTCTGATT+TGG | + | chr4_1:29826796-29826815 | None:intergenic | 30.0% |
| ! | CTGTGAGAAAGTGTAAATTT+GGG | + | chr4_1:29826915-29826934 | None:intergenic | 30.0% |
| ! | TCTGTGAGAAAGTGTAAATT+TGG | + | chr4_1:29826916-29826935 | None:intergenic | 30.0% |
| ! | TGTCAAAATTTGGTTTCTTC+CGG | + | chr4_1:29826968-29826987 | None:intergenic | 30.0% |
| ! | TAACTTTTGTGACTCTGTTT+GGG | + | chr4_1:29827081-29827100 | None:intergenic | 30.0% |
| ! | ATAACTTTTGTGACTCTGTT+TGG | + | chr4_1:29827082-29827101 | None:intergenic | 30.0% |
| AATGGCTCAATATTCTGTTT+GGG | + | chr4_1:29827132-29827151 | None:intergenic | 30.0% | |
| AAATGGCTCAATATTCTGTT+TGG | + | chr4_1:29827133-29827152 | None:intergenic | 30.0% | |
| AAACAGAATATTGAGCCATT+TGG | - | chr4_1:29827132-29827151 | Msa0543430:intron | 30.0% | |
| ! | TTGTATTTGTTAGCAAGTGT+TGG | + | chr4_1:29827435-29827454 | None:intergenic | 30.0% |
| !! | TTACACATTATCTTGCTGTT+GGG | + | chr4_1:29827584-29827603 | None:intergenic | 30.0% |
| ! | AAGATAATGTGTAAGTTGAC+TGG | - | chr4_1:29827590-29827609 | Msa0543430:intron | 30.0% |
| !!! | GACTGGTTTATTTTTGAACA+AGG | - | chr4_1:29827607-29827626 | Msa0543430:intron | 30.0% |
| TATGATTCATAAGCTTGTCA+AGG | - | chr4_1:29827678-29827697 | Msa0543430:intron | 30.0% | |
| AAATATCTATCATTGCAGAC+TGG | + | chr4_1:29827856-29827875 | None:intergenic | 30.0% | |
| !! | TCTTTTGGGAAATAGTATTC+AGG | - | chr4_1:29827904-29827923 | Msa0543430:CDS | 30.0% |
| AATTGTAAACGAAAATGGTG+AGG | - | chr4_1:29828261-29828280 | Msa0543430:intron | 30.0% | |
| ATTGTAAACGAAAATGGTGA+GGG | - | chr4_1:29828262-29828281 | Msa0543430:intron | 30.0% | |
| !! | CTATTACACTGCTTTAAGAA+GGG | + | chr4_1:29828425-29828444 | None:intergenic | 30.0% |
| !! | ACTATTACACTGCTTTAAGA+AGG | + | chr4_1:29828426-29828445 | None:intergenic | 30.0% |
| CAAATACAAGCAACTTCTTT+AGG | - | chr4_1:29828571-29828590 | Msa0543430:intron | 30.0% | |
| ! | TTTAGGATGCAAAGAAGTAA+AGG | - | chr4_1:29828588-29828607 | Msa0543430:intron | 30.0% |
| TAGCATTAAGGTATGTTTAG+AGG | - | chr4_1:29828727-29828746 | Msa0543430:intron | 30.0% | |
| AGCATTAAGGTATGTTTAGA+GGG | - | chr4_1:29828728-29828747 | Msa0543430:intron | 30.0% | |
| CAAAAATAAGCCAATCCAAA+AGG | + | chr4_1:29828884-29828903 | None:intergenic | 30.0% | |
| GTTTCGGTTCATATTAGTTA+AGG | - | chr4_1:29829197-29829216 | Msa0543430:intron | 30.0% | |
| GTTCATATTAGTTAAGGACT+TGG | - | chr4_1:29829203-29829222 | Msa0543430:intron | 30.0% | |
| !! | TATATCAGCTAAGCTTTAGA+TGG | + | chr4_1:29829248-29829267 | None:intergenic | 30.0% |
| AGAGAAGATAGAAACAAACT+AGG | - | chr4_1:29829457-29829476 | Msa0543430:CDS | 30.0% | |
| GTTGAAGTAAAAATGAAAGC+AGG | - | chr4_1:29829616-29829635 | Msa0543430:intron | 30.0% | |
| !! | CTATTACACTGCTTTAAGAA+AGG | + | chr4_1:29828425-29828444 | None:intergenic | 30.0% |
| !!! | GACTGGTTTATTTTTGAACA+AGG | - | chr4_1:29827607-29827626 | Msa0543430:intron | 30.0% |
| TTTCAACTCATATCAGTTGT+AGG | - | chr4_1:29830174-29830193 | Msa0543430:intron | 30.0% | |
| AGCAACATTGGAAAAACAAA+AGG | + | chr4_1:29830339-29830358 | None:intergenic | 30.0% | |
| ATAATTGTATGGAGCAACAT+TGG | + | chr4_1:29830351-29830370 | None:intergenic | 30.0% | |
| TTGCTCCATACAATTATTAC+AGG | - | chr4_1:29830354-29830373 | Msa0543430:intron | 30.0% | |
| ! | CGAATTGGCTTAATATTACA+GGG | + | chr4_1:29830397-29830416 | None:intergenic | 30.0% |
| CCTGTAATATTAAGCCAATT+CGG | - | chr4_1:29830395-29830414 | Msa0543430:intron | 30.0% | |
| ACAATGACAGATAAATGAAG+GGG | + | chr4_1:29830471-29830490 | None:intergenic | 30.0% | |
| CACAATGACAGATAAATGAA+GGG | + | chr4_1:29830472-29830491 | None:intergenic | 30.0% | |
| TCACAATGACAGATAAATGA+AGG | + | chr4_1:29830473-29830492 | None:intergenic | 30.0% | |
| TCATTGTGAATGTGTTAAAG+TGG | - | chr4_1:29830484-29830503 | Msa0543430:CDS | 30.0% | |
| AATGTGAAGATGCATAAACA+GGG | + | chr4_1:29830639-29830658 | None:intergenic | 30.0% | |
| AAATGTGAAGATGCATAAAC+AGG | + | chr4_1:29830640-29830659 | None:intergenic | 30.0% | |
| TTTCAGATTTGCAGGAAAAA+TGG | - | chr4_1:29830768-29830787 | Msa0543430:intron | 30.0% | |
| TTCAGATTTGCAGGAAAAAT+GGG | - | chr4_1:29830769-29830788 | Msa0543430:intron | 30.0% | |
| ! | CAACTTTTGCATATAACCTT+AGG | + | chr4_1:29830820-29830839 | None:intergenic | 30.0% |
| ACAATTCCATCCAATATTGA+TGG | - | chr4_1:29830880-29830899 | Msa0543430:intron | 30.0% | |
| !! | AAGCACTTTAGGAATGATTT+TGG | - | chr4_1:29830937-29830956 | Msa0543430:intron | 30.0% |
| ACAAAATTAAGAAGTTGGAG+AGG | - | chr4_1:29830984-29831003 | Msa0543430:intron | 30.0% | |
| CAAAATTAAGAAGTTGGAGA+GGG | - | chr4_1:29830985-29831004 | Msa0543430:intron | 30.0% | |
| ! | GGTTGTTTGATCTTTAGAAA+AGG | - | chr4_1:29831150-29831169 | Msa0543430:CDS | 30.0% |
| ! | TGTTTGATCTTTAGAAAAGG+TGG | - | chr4_1:29831153-29831172 | Msa0543430:CDS | 30.0% |
| ! | GACTAGGTTTTCTTTTACAA+GGG | - | chr4_1:29831200-29831219 | Msa0543430:CDS | 30.0% |
| !!! | TTTTACAAGGGTGTTCTTTT+GGG | - | chr4_1:29831212-29831231 | Msa0543430:CDS | 30.0% |
| ! | GTTGTATAGGAGTCAATTTT+AGG | - | chr4_1:29831282-29831301 | Msa0543430:CDS | 30.0% |
| !! | TATAGGAGTCAATTTTAGGT+GGG | - | chr4_1:29831286-29831305 | Msa0543430:CDS | 30.0% |
| !!! | CTTTGTTGGTGTTTTATTTC+AGG | - | chr4_1:29831359-29831378 | Msa0543430:CDS | 30.0% |
| GATGAAGTACAAATAAAAGG+CGG | + | chr4_1:29831389-29831408 | None:intergenic | 30.0% | |
| !! | GCCTTTTATTTGTACTTCAT+CGG | - | chr4_1:29831388-29831407 | Msa0543430:exon | 30.0% |
| ACCGATGAAGTACAAATAAA+AGG | + | chr4_1:29831392-29831411 | None:intergenic | 30.0% | |
| GGTAATAATAACCCTCTTGT+TGG | + | chr4_1:29826775-29826794 | None:intergenic | 35.0% | |
| ! | AGAAATGGGGTTTCAGTTTT+GGG | + | chr4_1:29826813-29826832 | None:intergenic | 35.0% |
| ATGAGTGTCTGATGAGAAAT+GGG | + | chr4_1:29826827-29826846 | None:intergenic | 35.0% | |
| AATGAGTGTCTGATGAGAAA+TGG | + | chr4_1:29826828-29826847 | None:intergenic | 35.0% | |
| !! | GTGAAGTAGGAGTTTTATGA+TGG | + | chr4_1:29826893-29826912 | None:intergenic | 35.0% |
| AGTGTAAATTTGGGTGAAGT+AGG | + | chr4_1:29826906-29826925 | None:intergenic | 35.0% | |
| ! | TGCTTACATTTTGCCAAAAC+CGG | - | chr4_1:29826946-29826965 | Msa0543430:intron | 35.0% |
| !! | AATTTGGTTTCTTCCGGTTT+TGG | + | chr4_1:29826962-29826981 | None:intergenic | 35.0% |
| GAATATTGAGCCATTTGGAT+TGG | - | chr4_1:29827137-29827156 | Msa0543430:intron | 35.0% | |
| TGATTCATAAGCTTGTGTCA+AGG | - | chr4_1:29827214-29827233 | Msa0543430:intron | 35.0% | |
| ! | CTTACACATTATCTTGCTGT+TGG | + | chr4_1:29827585-29827604 | None:intergenic | 35.0% |
| ! | AACTATGGACTTGTTTGGAT+TGG | + | chr4_1:29827820-29827839 | None:intergenic | 35.0% |
| AATCCAAACAAGTCCATAGT+TGG | - | chr4_1:29827819-29827838 | Msa0543430:CDS | 35.0% | |
| GTTCATATTAGTCAAGGACT+TGG | - | chr4_1:29827967-29827986 | Msa0543430:intron | 35.0% | |
| TTGAATTCCTAACAAGGAGA+TGG | - | chr4_1:29828137-29828156 | Msa0543430:CDS | 35.0% | |
| GAAAATGGTGAGGGAAATAT+TGG | - | chr4_1:29828271-29828290 | Msa0543430:intron | 35.0% | |
| ! | TGGACTTGGTAGATGTAAAT+CGG | + | chr4_1:29828614-29828633 | None:intergenic | 35.0% |
| ! | ATAAGTTTTGCGAGACTCTT+TGG | + | chr4_1:29828816-29828835 | None:intergenic | 35.0% |
| AAAAGGGTCAATGTTCTGTT+TGG | + | chr4_1:29828867-29828886 | None:intergenic | 35.0% | |
| ! | AAACAGAACATTGACCCTTT+TGG | - | chr4_1:29828866-29828885 | Msa0543430:intron | 35.0% |
| GGGGATTTGATGAATACATT+TGG | - | chr4_1:29828090-29828109 | Msa0543430:CDS | 35.0% | |
| ATCACATATGTTTGCGACAT+AGG | + | chr4_1:29829435-29829454 | None:intergenic | 35.0% | |
| GAAAATGGCAAGGAAAATGT+TGG | - | chr4_1:29829569-29829588 | Msa0543430:intron | 35.0% | |
| ACTCAGCATATAAACTTGAC+AGG | + | chr4_1:29829757-29829776 | None:intergenic | 35.0% | |
| AAATAATGTCGGTCAGAACA+TGG | + | chr4_1:29829815-29829834 | None:intergenic | 35.0% | |
| TTACACATTATCCTGCTGTT+GGG | + | chr4_1:29829997-29830016 | None:intergenic | 35.0% | |
| ! | AGTTGTAGGCATTGTAACAT+CGG | - | chr4_1:29830188-29830207 | Msa0543430:intron | 35.0% |
| TGTGGGCAAATAAGGTAAAT+GGG | - | chr4_1:29830282-29830301 | Msa0543430:intron | 35.0% | |
| ! | CCGAATTGGCTTAATATTAC+AGG | + | chr4_1:29830398-29830417 | None:intergenic | 35.0% |
| ATACGGAAACAAAACCGAAT+TGG | + | chr4_1:29830412-29830431 | None:intergenic | 35.0% | |
| GATAAATGAAGGGGAAAAAG+TGG | + | chr4_1:29830462-29830481 | None:intergenic | 35.0% | |
| ! | GTTAAAGTGGCATACTGATT+TGG | - | chr4_1:29830497-29830516 | Msa0543430:CDS | 35.0% |
| ACAATGAAGGAGAAGATGAA+TGG | + | chr4_1:29830594-29830613 | None:intergenic | 35.0% | |
| TCATCTTCTACTGAATCGTA+TGG | - | chr4_1:29830688-29830707 | Msa0543430:intron | 35.0% | |
| TTCCTGCAAATCTGAAAAGA+AGG | + | chr4_1:29830765-29830784 | None:intergenic | 35.0% | |
| ATTCCATCCAATATTGATGG+TGG | - | chr4_1:29830883-29830902 | Msa0543430:intron | 35.0% | |
| TTGCAACATACGTGAAATGA+AGG | - | chr4_1:29830906-29830925 | Msa0543430:intron | 35.0% | |
| !!! | AGGTTTTTCTGAAGCACTTT+AGG | - | chr4_1:29830926-29830945 | Msa0543430:intron | 35.0% |
| AACGAAGAACTTACTCATGA+TGG | - | chr4_1:29831009-29831028 | Msa0543430:intron | 35.0% | |
| ! | CAATCCAAGTTAGTTTAAGG+TGG | - | chr4_1:29831104-29831123 | Msa0543430:CDS | 35.0% |
| ! | ATCTTTAGAAAAGGTGGATG+TGG | - | chr4_1:29831159-29831178 | Msa0543430:CDS | 35.0% |
| ! | GGACTAGGTTTTCTTTTACA+AGG | - | chr4_1:29831199-29831218 | Msa0543430:CDS | 35.0% |
| !!! | CTTTTACAAGGGTGTTCTTT+TGG | - | chr4_1:29831211-29831230 | Msa0543430:CDS | 35.0% |
| !!! | TTTACAAGGGTGTTCTTTTG+GGG | - | chr4_1:29831213-29831232 | Msa0543430:CDS | 35.0% |
| ! | GTATAGGAGTCAATTTTAGG+TGG | - | chr4_1:29831285-29831304 | Msa0543430:CDS | 35.0% |
| !! | ATAGGAGTCAATTTTAGGTG+GGG | - | chr4_1:29831287-29831306 | Msa0543430:CDS | 35.0% |
| ! | TTAGGTGGGGATGTTTATTT+TGG | - | chr4_1:29831300-29831319 | Msa0543430:CDS | 35.0% |
| ! | GAGAAATGGGGTTTCAGTTT+TGG | + | chr4_1:29826814-29826833 | None:intergenic | 40.0% |
| TGAGTGTCTGATGAGAAATG+GGG | + | chr4_1:29826826-29826845 | None:intergenic | 40.0% | |
| GGTATTTCACCCGATTTCAA+AGG | - | chr4_1:29826858-29826877 | Msa0543430:intron | 40.0% | |
| TTCGTAGAGAGGTAGCATTA+AGG | - | chr4_1:29827006-29827025 | Msa0543430:intron | 40.0% | |
| TGGACTTGGCAGATGTAAAT+CGG | + | chr4_1:29827489-29827508 | None:intergenic | 40.0% | |
| !! | GCATCGACTGAAATGAATTG+CGG | - | chr4_1:29827523-29827542 | Msa0543430:intron | 40.0% |
| ATGAATTGCGGAACAAGTGA+AGG | - | chr4_1:29827535-29827554 | Msa0543430:intron | 40.0% | |
| ! | GCTCACTCAGTGTTTCTTTT+GGG | - | chr4_1:29827890-29827909 | Msa0543430:CDS | 40.0% |
| AAGTCTTCCATCTCCTTGTT+AGG | + | chr4_1:29828147-29828166 | None:intergenic | 40.0% | |
| ! | AGAACTCCATTGGAGTGTTA+GGG | + | chr4_1:29828364-29828383 | None:intergenic | 40.0% |
| ACTCAGCAGATAAACTTGAC+AGG | + | chr4_1:29828472-29828491 | None:intergenic | 40.0% | |
| TCGGTATAATGTTCGTAGAG+AGG | - | chr4_1:29828704-29828723 | Msa0543430:intron | 40.0% | |
| TTCGTAGAGAGGTAGCATTA+AGG | - | chr4_1:29827006-29827025 | Msa0543430:intron | 40.0% | |
| ! | GAACATTGACCCTTTTGGAT+TGG | - | chr4_1:29828871-29828890 | Msa0543430:intron | 40.0% |
| CAATCCAAACGAGTTCATAG+TGG | - | chr4_1:29829083-29829102 | Msa0543430:intron | 40.0% | |
| !! | CTTTTGGGGAAATAGTGTTC+TGG | - | chr4_1:29829140-29829159 | Msa0543430:intron | 40.0% |
| ! | ATGGTGTTAAGGCAGTGTTA+GGG | + | chr4_1:29829662-29829681 | None:intergenic | 40.0% |
| ! | TATGGTGTTAAGGCAGTGTT+AGG | + | chr4_1:29829663-29829682 | None:intergenic | 40.0% |
| TGGACTTGGCAGATGTAAAT+CGG | + | chr4_1:29827489-29827508 | None:intergenic | 40.0% | |
| ATGAATTGCGGAACAAGTGA+AGG | - | chr4_1:29827535-29827554 | Msa0543430:intron | 40.0% | |
| CTTACACATTATCCTGCTGT+TGG | + | chr4_1:29829998-29830017 | None:intergenic | 40.0% | |
| AGGATAATGTGTAAGCAGAC+TGG | - | chr4_1:29830003-29830022 | Msa0543430:intron | 40.0% | |
| CTGTGGGCAAATAAGGTAAA+TGG | - | chr4_1:29830281-29830300 | Msa0543430:intron | 40.0% | |
| CTTCTTCTTCCTCTTGGTTT+AGG | - | chr4_1:29830563-29830582 | Msa0543430:CDS | 40.0% | |
| ATGGTCAAACCTAAACCAAG+AGG | + | chr4_1:29830575-29830594 | None:intergenic | 40.0% | |
| GAGATGCGAAGAAACAATGA+AGG | + | chr4_1:29830607-29830626 | None:intergenic | 40.0% | |
| TGAAACATAAGCCCAGTCAA+TGG | + | chr4_1:29830740-29830759 | None:intergenic | 40.0% | |
| ! | TGCCTTCTTTTCAGATTTGC+AGG | - | chr4_1:29830760-29830779 | Msa0543430:intron | 40.0% |
| AGATTTGCAGGAAAAATGGG+AGG | - | chr4_1:29830772-29830791 | Msa0543430:intron | 40.0% | |
| CAACCACCATCAATATTGGA+TGG | + | chr4_1:29830889-29830908 | None:intergenic | 40.0% | |
| GTTGCAACCACCATCAATAT+TGG | + | chr4_1:29830893-29830912 | None:intergenic | 40.0% | |
| !! | TGATGGCTTTGATGATGTCT+TGG | - | chr4_1:29831026-29831045 | Msa0543430:intron | 40.0% |
| CTCTCCACCTTAAACTAACT+TGG | + | chr4_1:29831111-29831130 | None:intergenic | 40.0% | |
| ! | GTTAGTTTAAGGTGGAGAGT+AGG | - | chr4_1:29831112-29831131 | Msa0543430:CDS | 40.0% |
| !!! | TTACAAGGGTGTTCTTTTGG+GGG | - | chr4_1:29831214-29831233 | Msa0543430:CDS | 40.0% |
| AGTAGTGACGATGAGTGTTA+TGG | - | chr4_1:29831239-29831258 | Msa0543430:CDS | 40.0% | |
| !!! | TTATGGATGCCGTTTTTCAG+TGG | - | chr4_1:29831256-29831275 | Msa0543430:CDS | 40.0% |
| TACAACCGACCACTGAAAAA+CGG | + | chr4_1:29831268-29831287 | None:intergenic | 40.0% | |
| ! | TTTTCAGTGGTCGGTTGTAT+AGG | - | chr4_1:29831269-29831288 | Msa0543430:CDS | 40.0% |
| !!! | GTGGGGATGTTTATTTTGGT+GGG | - | chr4_1:29831304-29831323 | Msa0543430:CDS | 40.0% |
| AACCCTCTTGTTGGAGAGTT+GGG | + | chr4_1:29826766-29826785 | None:intergenic | 45.0% | |
| TAACCCTCTTGTTGGAGAGT+TGG | + | chr4_1:29826767-29826786 | None:intergenic | 45.0% | |
| AGACACTCATTTCGAACACG+CGG | - | chr4_1:29826837-29826856 | Msa0543430:intron | 45.0% | |
| TCGGTGTAATGTTCGTAGAG+AGG | - | chr4_1:29826995-29827014 | Msa0543430:intron | 45.0% | |
| AAATAATGGCGGTCAGAACG+TGG | + | chr4_1:29827402-29827421 | None:intergenic | 45.0% | |
| CGGAACAAGTGAAGGTTTGA+TGG | - | chr4_1:29827543-29827562 | Msa0543430:intron | 45.0% | |
| ! | GGTTTGATGGCAGACAATGA+TGG | - | chr4_1:29827556-29827575 | Msa0543430:intron | 45.0% |
| ! | CTGCCAACTATGGACTTGTT+TGG | + | chr4_1:29827825-29827844 | None:intergenic | 45.0% |
| GGTCAATGAACTGCCAACTA+TGG | + | chr4_1:29827835-29827854 | None:intergenic | 45.0% | |
| ! | GGCTCACTCAGTGTTTCTTT+TGG | - | chr4_1:29827889-29827908 | Msa0543430:CDS | 45.0% |
| AACTGACCCTAACACTCCAA+TGG | - | chr4_1:29828355-29828374 | Msa0543430:intron | 45.0% | |
| ! | CAGAACTCCATTGGAGTGTT+AGG | + | chr4_1:29828365-29828384 | None:intergenic | 45.0% |
| GTGTTCAGACAGAACTCCAT+TGG | + | chr4_1:29828374-29828393 | None:intergenic | 45.0% | |
| CTGAAATGAGTTGCGAAACG+CGG | - | chr4_1:29828655-29828674 | Msa0543430:intron | 45.0% | |
| GAGCTTATGCGAAGCAACTT+AGG | - | chr4_1:29828903-29828922 | Msa0543430:intron | 45.0% | |
| ACTGCCACTATGAACTCGTT+TGG | + | chr4_1:29829090-29829109 | None:intergenic | 45.0% | |
| AGACTCATCATGGTTGGACT+TGG | + | chr4_1:29829916-29829935 | None:intergenic | 45.0% | |
| CAACCATGATGAGTCTGCAT+CGG | - | chr4_1:29829920-29829939 | Msa0543430:intron | 45.0% | |
| !! | GCATCGGCTGAAATGAATTG+CGG | - | chr4_1:29829936-29829955 | Msa0543430:intron | 45.0% |
| CGGAACAAGTGAAGGTTTGA+TGG | - | chr4_1:29827543-29827562 | Msa0543430:intron | 45.0% | |
| ! | AAGTCCACAAGCATTGCAGA+GGG | + | chr4_1:29830261-29830280 | None:intergenic | 45.0% |
| CAATGCTTGTGGACTTCTGT+GGG | - | chr4_1:29830265-29830284 | Msa0543430:intron | 45.0% | |
| TGGACTTCTGTGGGCAAATA+AGG | - | chr4_1:29830274-29830293 | Msa0543430:intron | 45.0% | |
| AGAGGAAGAAGAAGAATGCC+AGG | + | chr4_1:29830557-29830576 | None:intergenic | 45.0% | |
| GGCATTCTTCTTCTTCCTCT+TGG | - | chr4_1:29830557-29830576 | Msa0543430:CDS | 45.0% | |
| ! | TCTGTTCGTAGCCATTGACT+GGG | - | chr4_1:29830726-29830745 | Msa0543430:intron | 45.0% |
| AATGGGAGGTAGTAGAAGAC+TGG | - | chr4_1:29830786-29830805 | Msa0543430:intron | 45.0% | |
| ATGGGAGGTAGTAGAAGACT+GGG | - | chr4_1:29830787-29830806 | Msa0543430:intron | 45.0% | |
| CAGTTTGAGTGATGAGGACT+AGG | - | chr4_1:29831184-29831203 | Msa0543430:CDS | 45.0% | |
| !!! | GGTGGGGATGTTTATTTTGG+TGG | - | chr4_1:29831303-29831322 | Msa0543430:CDS | 45.0% |
| ! | TTTGGTGGGTGTTGTCCTTA+TGG | - | chr4_1:29831318-29831337 | Msa0543430:CDS | 45.0% |
| ! | TTGGTGGGTGTTGTCCTTAT+GGG | - | chr4_1:29831319-29831338 | Msa0543430:CDS | 45.0% |
| ACACCAACAAAGACACTCTG+CGG | + | chr4_1:29831351-29831370 | None:intergenic | 45.0% | |
| !!! | TTAATTTTAAATTACTAATA+AGG | - | chr4_1:29829399-29829418 | Msa0543430:CDS | 5.0% |
| !!! | TCTAAATTTTTTATTTTATA+CGG | + | chr4_1:29830429-29830448 | None:intergenic | 5.0% |
| CTCCCAACTCTCCAACAAGA+GGG | - | chr4_1:29826761-29826780 | Msa0543430:intron | 50.0% | |
| GCAGACATCAGCAACTCGTT+TGG | + | chr4_1:29827359-29827378 | None:intergenic | 50.0% | |
| AGACTCGTCATGGTTGGACT+TGG | + | chr4_1:29827503-29827522 | None:intergenic | 50.0% | |
| AGACTCGTCAAGGTTGGACT+TGG | + | chr4_1:29828628-29828647 | None:intergenic | 50.0% | |
| TGATGCAGACTCGTCAAGGT+TGG | + | chr4_1:29828634-29828653 | None:intergenic | 50.0% | |
| AATGAGTTGCGAAACGCGGA+AGG | - | chr4_1:29828659-29828678 | Msa0543430:intron | 50.0% | |
| CGATGCAGACTCATCATGGT+TGG | + | chr4_1:29829922-29829941 | None:intergenic | 50.0% | |
| ! | GGTTTGATGGCAGACAACGA+TGG | - | chr4_1:29829969-29829988 | Msa0543430:intron | 50.0% |
| ! | CAAGCATTGCAGAGGGTTCT+TGG | + | chr4_1:29830254-29830273 | None:intergenic | 50.0% |
| AGAACCCTCTGCAATGCTTG+TGG | - | chr4_1:29830254-29830273 | Msa0543430:intron | 50.0% | |
| ! | GAAGTCCACAAGCATTGCAG+AGG | + | chr4_1:29830262-29830281 | None:intergenic | 50.0% |
| GCAATGCTTGTGGACTTCTG+TGG | - | chr4_1:29830264-29830283 | Msa0543430:intron | 50.0% | |
| GGAAGAAGAAGAATGCCAGG+TGG | + | chr4_1:29830554-29830573 | None:intergenic | 50.0% | |
| CTCTGTTCGTAGCCATTGAC+TGG | - | chr4_1:29830725-29830744 | Msa0543430:intron | 50.0% | |
| AAGACTGGGCGTTCAACCTA+AGG | - | chr4_1:29830801-29830820 | Msa0543430:intron | 50.0% | |
| GTGGCTCAGTTTGAGTGATG+AGG | - | chr4_1:29831178-29831197 | Msa0543430:CDS | 50.0% | |
| !!! | GGATGCCGTTTTTCAGTGGT+CGG | - | chr4_1:29831260-29831279 | Msa0543430:CDS | 50.0% |
| ! | TGACCGCAGAGTGTCTTTGT+TGG | - | chr4_1:29831345-29831364 | Msa0543430:CDS | 50.0% |
| GTCTCTGTTCGTCTTGTGCA+GGG | - | chr4_1:29831410-29831429 | Msa0543430:five_prime_UTR | 50.0% | |
| GTTGGAGAGTTGGGAGGCTT+TGG | + | chr4_1:29826757-29826776 | None:intergenic | 55.0% | |
| CCTCTTGTTGGAGAGTTGGG+AGG | + | chr4_1:29826763-29826782 | None:intergenic | 55.0% | |
| CCTCCCAACTCTCCAACAAG+AGG | - | chr4_1:29826760-29826779 | Msa0543430:intron | 55.0% | |
| CGATGCAGACTCGTCATGGT+TGG | + | chr4_1:29827509-29827528 | None:intergenic | 55.0% | |
| CAGTCGATGCAGACTCGTCA+TGG | + | chr4_1:29827513-29827532 | None:intergenic | 55.0% | |
| CAGCTGATGCAGACTCGTCA+AGG | + | chr4_1:29828638-29828657 | None:intergenic | 55.0% | |
| CAGCCGATGCAGACTCATCA+TGG | + | chr4_1:29829926-29829945 | None:intergenic | 55.0% | |
| CAACGATGGATCCCAACAGC+AGG | - | chr4_1:29829983-29830002 | Msa0543430:intron | 55.0% | |
| ! | AGAAGTGCACGCCAACGATG+CGG | - | chr4_1:29830213-29830232 | Msa0543430:intron | 55.0% |
| GTGGAGAGTAGGTTGTGCAG+TGG | - | chr4_1:29831123-29831142 | Msa0543430:CDS | 55.0% | |
| GAGAGTAGGTTGTGCAGTGG+TGG | - | chr4_1:29831126-29831145 | Msa0543430:CDS | 55.0% | |
| AGTAGGTTGTGCAGTGGTGG+AGG | - | chr4_1:29831129-29831148 | Msa0543430:CDS | 55.0% | |
| CTCTGCGGTCAACACCCATA+AGG | + | chr4_1:29831336-29831355 | None:intergenic | 55.0% | |
| GGTCTCTGTTCGTCTTGTGC+AGG | - | chr4_1:29831409-29831428 | Msa0543430:five_prime_UTR | 55.0% | |
| CAGAGGGTTCTTGGCCCTTC+AGG | + | chr4_1:29830245-29830264 | None:intergenic | 60.0% | |
| TCAGGTCCACGCCGCATCGT+TGG | + | chr4_1:29830227-29830246 | None:intergenic | 65.0% | |
| ACGATGCGGCGTGGACCTGA+AGG | - | chr4_1:29830227-29830246 | Msa0543430:intron | 65.0% | |
| CGATGCGGCGTGGACCTGAA+GGG | - | chr4_1:29830228-29830247 | Msa0543430:intron | 65.0% | |
| TGCACGCCAACGATGCGGCG+TGG | - | chr4_1:29830218-29830237 | Msa0543430:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 29826624 | 29831445 | 29826624 | ID=Msa0543430;Name=Msa0543430 |
| chr4_1 | mRNA | 29826624 | 29831445 | 29826624 | ID=Msa0543430-mRNA-1;Parent=Msa0543430;Name=Msa0543430-mRNA-1;_AED=0.17;_eAED=0.17;_QI=39|0.37|0.44|0.66|1|1|9|0|422 |
| chr4_1 | exon | 29826624 | 29826688 | 29826624 | ID=Msa0543430-mRNA-1:exon:7925;Parent=Msa0543430-mRNA-1 |
| chr4_1 | exon | 29826788 | 29826848 | 29826788 | ID=Msa0543430-mRNA-1:exon:7924;Parent=Msa0543430-mRNA-1 |
| chr4_1 | exon | 29827247 | 29827295 | 29827247 | ID=Msa0543430-mRNA-1:exon:7923;Parent=Msa0543430-mRNA-1 |
| chr4_1 | exon | 29827365 | 29827484 | 29827365 | ID=Msa0543430-mRNA-1:exon:7922;Parent=Msa0543430-mRNA-1 |
| chr4_1 | exon | 29827774 | 29827974 | 29827774 | ID=Msa0543430-mRNA-1:exon:7921;Parent=Msa0543430-mRNA-1 |
| chr4_1 | exon | 29828057 | 29828188 | 29828057 | ID=Msa0543430-mRNA-1:exon:7920;Parent=Msa0543430-mRNA-1 |
| chr4_1 | exon | 29829333 | 29829476 | 29829333 | ID=Msa0543430-mRNA-1:exon:7919;Parent=Msa0543430-mRNA-1 |
| chr4_1 | exon | 29830470 | 29830601 | 29830470 | ID=Msa0543430-mRNA-1:exon:7918;Parent=Msa0543430-mRNA-1 |
| chr4_1 | exon | 29831042 | 29831445 | 29831042 | ID=Msa0543430-mRNA-1:exon:7917;Parent=Msa0543430-mRNA-1 |
| chr4_1 | five_prime_UTR | 29831407 | 29831445 | 29831407 | ID=Msa0543430-mRNA-1:five_prime_utr;Parent=Msa0543430-mRNA-1 |
| chr4_1 | CDS | 29831042 | 29831406 | 29831042 | ID=Msa0543430-mRNA-1:cds;Parent=Msa0543430-mRNA-1 |
| chr4_1 | CDS | 29830470 | 29830601 | 29830470 | ID=Msa0543430-mRNA-1:cds;Parent=Msa0543430-mRNA-1 |
| chr4_1 | CDS | 29829333 | 29829476 | 29829333 | ID=Msa0543430-mRNA-1:cds;Parent=Msa0543430-mRNA-1 |
| chr4_1 | CDS | 29828057 | 29828188 | 29828057 | ID=Msa0543430-mRNA-1:cds;Parent=Msa0543430-mRNA-1 |
| chr4_1 | CDS | 29827774 | 29827974 | 29827774 | ID=Msa0543430-mRNA-1:cds;Parent=Msa0543430-mRNA-1 |
| chr4_1 | CDS | 29827365 | 29827484 | 29827365 | ID=Msa0543430-mRNA-1:cds;Parent=Msa0543430-mRNA-1 |
| chr4_1 | CDS | 29827247 | 29827295 | 29827247 | ID=Msa0543430-mRNA-1:cds;Parent=Msa0543430-mRNA-1 |
| chr4_1 | CDS | 29826788 | 29826848 | 29826788 | ID=Msa0543430-mRNA-1:cds;Parent=Msa0543430-mRNA-1 |
| chr4_1 | CDS | 29826624 | 29826688 | 29826624 | ID=Msa0543430-mRNA-1:cds;Parent=Msa0543430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
