AlfalfaGEDB | Msa0664340

M. sativa cultivar zhongmu-4 / Msa0664340

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF06203.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664340	XP_039687244.1	75.214	117	19	1	167	273	1	117	6.03e-47	168
Msa0664340	XP_039687244.1	90.164	61	6	0	106	166	42	102	3.97e-25	111

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664340	sp\|Q8H1G0\|GAT28_ARATH	51.765	85	40	1	81	164	136	220	2.08e-17	85.9
Msa0664340	sp\|Q8H1G0\|GAT28_ARATH	48.780	82	42	0	192	273	156	237	2.72e-15	79.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664340	A0A396HYL3	73.043	115	23	1	167	273	1	115	2.21e-46	166
Msa0664340	A0A396HYL3	89.831	59	6	0	108	166	42	100	2.76e-24	107

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TFs/TRs:

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Gene ID	Type	Classification
Msa0664340	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0543430	Msa0664340	0.814223	1.719165e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664340	MtrunA17_Chr4g0002231	73.043	115	23	1	167	273	1	115	4.25e-50	166
Msa0664340	MtrunA17_Chr4g0002231	89.831	59	6	0	108	166	42	100	5.31e-28	107
Msa0664340	MtrunA17_Chr4g0065421	61.111	90	30	1	1	85	1	90	3.24e-23	101
Msa0664340	MtrunA17_Chr4g0002261	55.224	67	26	2	67	132	3	66	3.56e-13	64.3
Msa0664340	MtrunA17_Chr3g0132761	55.556	72	30	1	157	226	104	175	1.04e-11	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664340	AT1G51600.1	51.765	85	40	1	81	164	136	220	2.11e-18	85.9
Msa0664340	AT1G51600.1	48.780	82	42	0	192	273	156	237	2.76e-16	79.7
Msa0664340	AT1G51600.2	51.765	85	40	1	81	164	136	220	2.11e-18	85.9
Msa0664340	AT1G51600.2	48.780	82	42	0	192	273	156	237	2.76e-16	79.7
Msa0664340	AT3G21175.3	52.857	70	33	0	82	151	132	201	5.89e-16	77.0
Msa0664340	AT3G21175.3	59.615	52	21	0	192	243	150	201	1.09e-12	67.4
Msa0664340	AT3G21175.1	52.857	70	33	0	82	151	134	203	6.30e-15	75.5
Msa0664340	AT3G21175.1	41.463	82	48	0	192	273	152	233	9.33e-13	68.9
Msa0664340	AT3G21175.2	52.857	70	33	0	82	151	132	201	6.63e-15	75.5
Msa0664340	AT3G21175.2	41.463	82	48	0	192	273	150	231	9.41e-13	68.9

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Find 93 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTAAACCTTTGAAATC+GGG	0.472424	4_4:+3360168	None:intergenic
AAATGTGAAGATGCATAAAC+AGG	0.357473	4_4:+3356398	None:intergenic
AACCCTCTTGTTGGAGAGTT+GGG	0.343568	4_4:+3360272	None:intergenic
AAGACTGGGCGTTCAACCTA+AGG	0.539804	4_4:-3356234	Msa0664340:intron
AAGTCCACAAGCATTGCAGA+GGG	0.669436	4_4:+3356777	None:intergenic
AATGAGTGTCTGATGAGAAA+TGG	0.473328	4_4:+3360210	None:intergenic
AATGAGTTGCGAAACGCGGA+AGG	0.558566	4_4:-3358376	Msa0664340:CDS
AATGGGAGGTAGTAGAAGAC+TGG	0.501501	4_4:-3356249	Msa0664340:CDS
AATGTGAAGATGCATAAACA+GGG	0.669888	4_4:+3356399	None:intergenic
AATTGAAGAAACAAGAAGTT+AGG	0.283231	4_4:+3360405	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCGACACAACAATGAAATAA+TGG	-	chr4_4:3355701-3355720	Msa0664340:intron	30.0%
AATGGCTCAATATTCTGTTT+GGG	+	chr4_4:3356120-3356139	None:intergenic	30.0%
AAATGGCTCAATATTCTGTT+TGG	+	chr4_4:3356121-3356140	None:intergenic	30.0%
AAACAGAATATTGAGCCATT+TGG	-	chr4_4:3356120-3356139	Msa0664340:intron	30.0%
TATGATTCATAAGCTTGTCA+AGG	-	chr4_4:3356666-3356685	Msa0664340:intron	30.0%
AAATATCTATCATTGCAGAC+TGG	+	chr4_4:3356844-3356863	None:intergenic	30.0%
AATTGTAAACGAAAATGGTG+AGG	-	chr4_4:3357249-3357268	Msa0664340:intron	30.0%
ATTGTAAACGAAAATGGTGA+GGG	-	chr4_4:3357250-3357269	Msa0664340:intron	30.0%
CAAATACAAGCAACTTCTTT+AGG	-	chr4_4:3357559-3357578	Msa0664340:intron	30.0%
TAGCATTAAGGTATGTTTAG+AGG	-	chr4_4:3357715-3357734	Msa0664340:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	3355612	3360433	3355612	ID=Msa0664340;Name=Msa0664340
chr4_4	mRNA	3355612	3360433	3355612	ID=Msa0664340-mRNA-1;Parent=Msa0664340;Name=Msa0664340-mRNA-1;_AED=0.17;_eAED=0.17;_QI=39\|0.37\|0.44\|0.66\|1\|1\|9\|0\|422
chr4_4	exon	3355612	3355676	3355612	ID=Msa0664340-mRNA-1:exon:1055;Parent=Msa0664340-mRNA-1
chr4_4	exon	3355776	3355836	3355776	ID=Msa0664340-mRNA-1:exon:1054;Parent=Msa0664340-mRNA-1
chr4_4	exon	3356235	3356283	3356235	ID=Msa0664340-mRNA-1:exon:1053;Parent=Msa0664340-mRNA-1
chr4_4	exon	3356353	3356472	3356353	ID=Msa0664340-mRNA-1:exon:1052;Parent=Msa0664340-mRNA-1
chr4_4	exon	3356762	3356962	3356762	ID=Msa0664340-mRNA-1:exon:1051;Parent=Msa0664340-mRNA-1
chr4_4	exon	3357045	3357176	3357045	ID=Msa0664340-mRNA-1:exon:1050;Parent=Msa0664340-mRNA-1
chr4_4	exon	3358321	3358464	3358321	ID=Msa0664340-mRNA-1:exon:1049;Parent=Msa0664340-mRNA-1
chr4_4	exon	3359458	3359589	3359458	ID=Msa0664340-mRNA-1:exon:1048;Parent=Msa0664340-mRNA-1
chr4_4	exon	3360030	3360433	3360030	ID=Msa0664340-mRNA-1:exon:1047;Parent=Msa0664340-mRNA-1
chr4_4	five_prime_UTR	3360395	3360433	3360395	ID=Msa0664340-mRNA-1:five_prime_utr;Parent=Msa0664340-mRNA-1
chr4_4	CDS	3360030	3360394	3360030	ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1
chr4_4	CDS	3359458	3359589	3359458	ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1
chr4_4	CDS	3358321	3358464	3358321	ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1
chr4_4	CDS	3357045	3357176	3357045	ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1
chr4_4	CDS	3356762	3356962	3356762	ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1
chr4_4	CDS	3356353	3356472	3356353	ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1
chr4_4	CDS	3356235	3356283	3356235	ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1
chr4_4	CDS	3355776	3355836	3355776	ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1
chr4_4	CDS	3355612	3355676	3355612	ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1

Gene Sequence

>Msa0664340

ATGGCGTCTCAGAAACTCACTGAGTACGAACACAAGCGACTCGAAAACATTCGACACAACAATGAAATAATGGCCGAACTCAAACTTCAATCCAAAGCCTCCCAACTCTCCAACAAGAGGGTTATTATTACCAAATCAGAGAAAAAACCCAAAACTGAAACCCCATTTCTCATCAGACACTCATTTCGAACACGCGGTATTTCACCCGATTTCAAAGGTTTAGATTTCCATCATAAAACTCCTACTTCACCCAAATTTACACTTTCTCACAGATTAGCTTCATTGGTTACATTTTGCCAAAACCGGAAGAAACCAAATTTTGACAAAAATGTTCGGTGTAATGTTCGTAGAGAGGTAGCATTAAGGATGCAAAGAAATAAAGGCCGATTTACATCTGCCAAGTCCAACCATGACGAGTCTGCATCGACTGAAATGAATTGCGGAACAAGTGAAGGTTTGATGGCAGACAATGATGGATCCCAACAGCAAGATAATGTGATGCAAAGAAGTAAAGGCCGATTTACATCTACCAAGTCCAACCTTGACGAGTCTGCATCAGCTGAAATGAGTTGCGAAACGCGGAAGGAACAAAATTTTGACAAAAAAGTTCGGTATAATGTTCGTAGAGAGGTAGCATTAAGGATGCAAAGAAATAAAGGCCGATTTACATCTGCCAAGTCCAACCATGATGAGTCTGCATCGGCTGAAATGAATTGCGGAACAAGTGAAGGTTTGATGGCAGACAACGATGGATCCCAACAGCAGGATAATGTCTTGAAAATAAAGTCTTATTTGGAAAGATTTCAACCTATACTGAAATTGTCCTTTATATTATTTGATAAATGGTCTTTCTTTCAACTCATATCAGTTGTAGGCATTGTAACATCGGTGAGAAGTGCACGCCAACGATGCGGCGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTCTGTGGGCAAATAAGGTTTGACCATTCATCTTCTCCTTCATTGTTTCTTCGCATCTCTACTTCAAACCCTGTTTATGCATCTTCACATTTTTTGCTTCATCGTCATCACGTTTCTGCTTCATCTTCTACTGAATCATTTGCAGGAAAAATGGGAGGTAGTAGAAGACTGGGCGTTCAACCTAAGGGTGTTCTTTTGGGGGTGAGTAGTGACGATGAGTGTTATGGATGCCGTTTTTCAGTGGTCGGTGTTCCGCCTTTTATTTGTACTTCATCGGTCTCTGTTCGTCTTGTGCAGGGATCAGATTTTTAA

Protein sequence

>Msa0664340

MASQKLTEYEHKRLENIRHNNEIMAELKLQSKASQLSNKRVIITKSEKKPKTETPFLIRHSFRTRGISPDFKGLDFHHKTPTSPKFTLSHRLASLVTFCQNRKKPNFDKNVRCNVRREVALRMQRNKGRFTSAKSNHDESASTEMNCGTSEGLMADNDGSQQQDNVMQRSKGRFTSTKSNLDESASAEMSCETRKEQNFDKKVRYNVRREVALRMQRNKGRFTSAKSNHDESASAEMNCGTSEGLMADNDGSQQQDNVLKIKSYLERFQPILKLSFILFDKWSFFQLISVVGIVTSVRSARQRCGVDLKGQEPSAMLVDFCGQIRFDHSSSPSLFLRISTSNPVYASSHFLLHRHHVSASSSTESFAGKMGGSRRLGVQPKGVLLGVSSDDECYGCRFSVVGVPPFICTSSVSVRLVQGSDF*