Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664340 | XP_039687244.1 | 75.214 | 117 | 19 | 1 | 167 | 273 | 1 | 117 | 6.03e-47 | 168 |
| Msa0664340 | XP_039687244.1 | 90.164 | 61 | 6 | 0 | 106 | 166 | 42 | 102 | 3.97e-25 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664340 | sp|Q8H1G0|GAT28_ARATH | 51.765 | 85 | 40 | 1 | 81 | 164 | 136 | 220 | 2.08e-17 | 85.9 |
| Msa0664340 | sp|Q8H1G0|GAT28_ARATH | 48.780 | 82 | 42 | 0 | 192 | 273 | 156 | 237 | 2.72e-15 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664340 | A0A396HYL3 | 73.043 | 115 | 23 | 1 | 167 | 273 | 1 | 115 | 2.21e-46 | 166 |
| Msa0664340 | A0A396HYL3 | 89.831 | 59 | 6 | 0 | 108 | 166 | 42 | 100 | 2.76e-24 | 107 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0664340 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0543430 | Msa0664340 | 0.814223 | 1.719165e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664340 | MtrunA17_Chr4g0002231 | 73.043 | 115 | 23 | 1 | 167 | 273 | 1 | 115 | 4.25e-50 | 166 |
| Msa0664340 | MtrunA17_Chr4g0002231 | 89.831 | 59 | 6 | 0 | 108 | 166 | 42 | 100 | 5.31e-28 | 107 |
| Msa0664340 | MtrunA17_Chr4g0065421 | 61.111 | 90 | 30 | 1 | 1 | 85 | 1 | 90 | 3.24e-23 | 101 |
| Msa0664340 | MtrunA17_Chr4g0002261 | 55.224 | 67 | 26 | 2 | 67 | 132 | 3 | 66 | 3.56e-13 | 64.3 |
| Msa0664340 | MtrunA17_Chr3g0132761 | 55.556 | 72 | 30 | 1 | 157 | 226 | 104 | 175 | 1.04e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664340 | AT1G51600.1 | 51.765 | 85 | 40 | 1 | 81 | 164 | 136 | 220 | 2.11e-18 | 85.9 |
| Msa0664340 | AT1G51600.1 | 48.780 | 82 | 42 | 0 | 192 | 273 | 156 | 237 | 2.76e-16 | 79.7 |
| Msa0664340 | AT1G51600.2 | 51.765 | 85 | 40 | 1 | 81 | 164 | 136 | 220 | 2.11e-18 | 85.9 |
| Msa0664340 | AT1G51600.2 | 48.780 | 82 | 42 | 0 | 192 | 273 | 156 | 237 | 2.76e-16 | 79.7 |
| Msa0664340 | AT3G21175.3 | 52.857 | 70 | 33 | 0 | 82 | 151 | 132 | 201 | 5.89e-16 | 77.0 |
| Msa0664340 | AT3G21175.3 | 59.615 | 52 | 21 | 0 | 192 | 243 | 150 | 201 | 1.09e-12 | 67.4 |
| Msa0664340 | AT3G21175.1 | 52.857 | 70 | 33 | 0 | 82 | 151 | 134 | 203 | 6.30e-15 | 75.5 |
| Msa0664340 | AT3G21175.1 | 41.463 | 82 | 48 | 0 | 192 | 273 | 152 | 233 | 9.33e-13 | 68.9 |
| Msa0664340 | AT3G21175.2 | 52.857 | 70 | 33 | 0 | 82 | 151 | 132 | 201 | 6.63e-15 | 75.5 |
| Msa0664340 | AT3G21175.2 | 41.463 | 82 | 48 | 0 | 192 | 273 | 150 | 231 | 9.41e-13 | 68.9 |
Find 93 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAAAATAAAGTCTTATT+TGG | 0.119600 | 4_4:-3356940 | Msa0664340:CDS |
| CCTTTATATTATTTGATAAA+TGG | 0.218289 | 4_4:-3356890 | Msa0664340:CDS |
| GAGAAATGGGGTTTCAGTTT+TGG | 0.248316 | 4_4:+3360224 | None:intergenic |
| TGGACTTCTGTGGGCAAATA+AGG | 0.252080 | 4_4:-3356761 | Msa0664340:intron |
| AATTTGGTTTCTTCCGGTTT+TGG | 0.255949 | 4_4:+3360076 | None:intergenic |
| CAGAGGGTTCTTGGCCCTTC+AGG | 0.272302 | 4_4:+3356793 | None:intergenic |
| AATTGAAGAAACAAGAAGTT+AGG | 0.283231 | 4_4:+3360405 | None:intergenic |
| CAAGCATTGCAGAGGGTTCT+TGG | 0.288221 | 4_4:+3356784 | None:intergenic |
| GAAACAAGAAGTTAGGGTTT+TGG | 0.301740 | 4_4:+3360412 | None:intergenic |
| TTTCAACTCATATCAGTTGT+AGG | 0.311609 | 4_4:-3356861 | Msa0664340:CDS |
| GTTGGAGAGTTGGGAGGCTT+TGG | 0.312705 | 4_4:+3360281 | None:intergenic |
| ACCGATGAAGTACAAATAAA+AGG | 0.320192 | 4_4:+3355646 | None:intergenic |
| TTTAGGATGCAAAGAAATAA+AGG | 0.333460 | 4_4:-3357159 | Msa0664340:intron |
| TTTAGGATGCAAAGAAATAA+AGG | 0.333460 | 4_4:-3359572 | Msa0664340:intron |
| TCTGTGAGAAAGTGTAAATT+TGG | 0.338132 | 4_4:+3360122 | None:intergenic |
| GAAATCTAAACCTTTGAAAT+CGG | 0.338857 | 4_4:+3360167 | None:intergenic |
| TGTCAAAATTTGGTTTCTTC+CGG | 0.341377 | 4_4:+3360070 | None:intergenic |
| AACCCTCTTGTTGGAGAGTT+GGG | 0.343568 | 4_4:+3360272 | None:intergenic |
| AAATGTGAAGATGCATAAAC+AGG | 0.357473 | 4_4:+3356398 | None:intergenic |
| TTCTCACAGATTAGCTTCAT+TGG | 0.358559 | 4_4:-3360109 | Msa0664340:CDS |
| TCGACACAACAATGAAATAA+TGG | 0.374080 | 4_4:-3360322 | Msa0664340:CDS |
| CGGAACAAGTGAAGGTTTGA+TGG | 0.376343 | 4_4:-3357079 | Msa0664340:CDS |
| CGGAACAAGTGAAGGTTTGA+TGG | 0.376343 | 4_4:-3359492 | Msa0664340:CDS |
| GGTAATAATAACCCTCTTGT+TGG | 0.387228 | 4_4:+3360263 | None:intergenic |
| ATAAAGGACAATTTCAGTAT+AGG | 0.401817 | 4_4:+3356906 | None:intergenic |
| GGTCTCTGTTCGTCTTGTGC+AGG | 0.415971 | 4_4:-3355626 | Msa0664340:CDS |
| AGTGTAAATTTGGGTGAAGT+AGG | 0.428207 | 4_4:+3360132 | None:intergenic |
| CCATTTATCAAATAATATAA+AGG | 0.430813 | 4_4:+3356890 | None:intergenic |
| TTACACATTATCTTGCTGTT+GGG | 0.431240 | 4_4:+3359454 | None:intergenic |
| CTTACACATTATCCTGCTGT+TGG | 0.456856 | 4_4:+3357040 | None:intergenic |
| CTTACACATTATCTTGCTGT+TGG | 0.457624 | 4_4:+3359453 | None:intergenic |
| ATGAGTGTCTGATGAGAAAT+GGG | 0.462114 | 4_4:+3360211 | None:intergenic |
| AGTAGTGACGATGAGTGTTA+TGG | 0.463165 | 4_4:-3355796 | Msa0664340:CDS |
| AGACTCATCATGGTTGGACT+TGG | 0.463495 | 4_4:+3357122 | None:intergenic |
| TGGACTTGGCAGATGTAAAT+CGG | 0.465549 | 4_4:+3357136 | None:intergenic |
| TGGACTTGGCAGATGTAAAT+CGG | 0.465549 | 4_4:+3359549 | None:intergenic |
| TTTGGATTGAAGTTTGAGTT+CGG | 0.467747 | 4_4:+3360299 | None:intergenic |
| TAACCCTCTTGTTGGAGAGT+TGG | 0.468536 | 4_4:+3360271 | None:intergenic |
| AAATCTAAACCTTTGAAATC+GGG | 0.472424 | 4_4:+3360168 | None:intergenic |
| AATGAGTGTCTGATGAGAAA+TGG | 0.473328 | 4_4:+3360210 | None:intergenic |
| TGGACTTGGTAGATGTAAAT+CGG | 0.473810 | 4_4:+3358424 | None:intergenic |
| ATTGAAGAAACAAGAAGTTA+GGG | 0.476786 | 4_4:+3360406 | None:intergenic |
| TTACACATTATCCTGCTGTT+GGG | 0.481883 | 4_4:+3357041 | None:intergenic |
| AGACTCGTCATGGTTGGACT+TGG | 0.484402 | 4_4:+3359535 | None:intergenic |
| GTCTCTGTTCGTCTTGTGCA+GGG | 0.489393 | 4_4:-3355625 | Msa0664340:CDS |
| AGACTCGTCAAGGTTGGACT+TGG | 0.495334 | 4_4:+3358410 | None:intergenic |
| TCAGGTCCACGCCGCATCGT+TGG | 0.497989 | 4_4:+3356811 | None:intergenic |
| CAGCCGATGCAGACTCATCA+TGG | 0.498772 | 4_4:+3357112 | None:intergenic |
| TTTAGGATGCAAAGAAGTAA+AGG | 0.501385 | 4_4:-3358447 | Msa0664340:intron |
| AATGGGAGGTAGTAGAAGAC+TGG | 0.501501 | 4_4:-3356249 | Msa0664340:CDS |
| CAATGCTTGTGGACTTCTGT+GGG | 0.512002 | 4_4:-3356770 | Msa0664340:CDS |
| GCAATGCTTGTGGACTTCTG+TGG | 0.515681 | 4_4:-3356771 | Msa0664340:CDS |
| CTGTGAGAAAGTGTAAATTT+GGG | 0.521016 | 4_4:+3360123 | None:intergenic |
| GGTATTTCACCCGATTTCAA+AGG | 0.531597 | 4_4:-3360177 | Msa0664340:CDS |
| TTCGTAGAGAGGTAGCATTA+AGG | 0.536977 | 4_4:-3358320 | Msa0664340:intron |
| TTCGTAGAGAGGTAGCATTA+AGG | 0.536977 | 4_4:-3360029 | Msa0664340:intron |
| AGAACCCTCTGCAATGCTTG+TGG | 0.537519 | 4_4:-3356781 | Msa0664340:CDS |
| GAGATGCGAAGAAACAATGA+AGG | 0.538662 | 4_4:+3356431 | None:intergenic |
| AAGACTGGGCGTTCAACCTA+AGG | 0.539804 | 4_4:-3356234 | Msa0664340:intron |
| CCTCTTGTTGGAGAGTTGGG+AGG | 0.541194 | 4_4:+3360275 | None:intergenic |
| ACAATGAAGGAGAAGATGAA+TGG | 0.542144 | 4_4:+3356444 | None:intergenic |
| ACGATGCGGCGTGGACCTGA+AGG | 0.544966 | 4_4:-3356808 | Msa0664340:CDS |
| ATGAATTGCGGAACAAGTGA+AGG | 0.546961 | 4_4:-3357087 | Msa0664340:CDS |
| ATGAATTGCGGAACAAGTGA+AGG | 0.546961 | 4_4:-3359500 | Msa0664340:CDS |
| AATGAGTTGCGAAACGCGGA+AGG | 0.558566 | 4_4:-3358376 | Msa0664340:CDS |
| CAGTCGATGCAGACTCGTCA+TGG | 0.558934 | 4_4:+3359525 | None:intergenic |
| CGATGCAGACTCGTCATGGT+TGG | 0.560227 | 4_4:+3359529 | None:intergenic |
| TCTTCAATTCAATTCAACAA+TGG | 0.562398 | 4_4:-3360391 | Msa0664340:exon |
| TGATGCAGACTCGTCAAGGT+TGG | 0.569658 | 4_4:+3358404 | None:intergenic |
| CAGCTGATGCAGACTCGTCA+AGG | 0.577397 | 4_4:+3358400 | None:intergenic |
| CAACGATGGATCCCAACAGC+AGG | 0.584413 | 4_4:-3357052 | Msa0664340:CDS |
| CGATGCAGACTCATCATGGT+TGG | 0.584481 | 4_4:+3357116 | None:intergenic |
| CTGAAATGAGTTGCGAAACG+CGG | 0.599299 | 4_4:-3358380 | Msa0664340:CDS |
| CAACCATGATGAGTCTGCAT+CGG | 0.601385 | 4_4:-3357115 | Msa0664340:CDS |
| CCTCCCAACTCTCCAACAAG+AGG | 0.610148 | 4_4:-3360275 | Msa0664340:CDS |
| CGATGCGGCGTGGACCTGAA+GGG | 0.610307 | 4_4:-3356807 | Msa0664340:CDS |
| TCGGTATAATGTTCGTAGAG+AGG | 0.616329 | 4_4:-3358331 | Msa0664340:CDS |
| GGTTTGATGGCAGACAATGA+TGG | 0.622019 | 4_4:-3359479 | Msa0664340:CDS |
| AGTTGTAGGCATTGTAACAT+CGG | 0.624202 | 4_4:-3356847 | Msa0664340:CDS |
| ATGGGAGGTAGTAGAAGACT+GGG | 0.636419 | 4_4:-3356248 | Msa0664340:CDS |
| GCATCGGCTGAAATGAATTG+CGG | 0.643791 | 4_4:-3357099 | Msa0664340:CDS |
| TGCACGCCAACGATGCGGCG+TGG | 0.646226 | 4_4:-3356817 | Msa0664340:CDS |
| GCATCGACTGAAATGAATTG+CGG | 0.648527 | 4_4:-3359512 | Msa0664340:CDS |
| CTCCCAACTCTCCAACAAGA+GGG | 0.649113 | 4_4:-3360274 | Msa0664340:CDS |
| GAAGTCCACAAGCATTGCAG+AGG | 0.650799 | 4_4:+3356776 | None:intergenic |
| TCGGTGTAATGTTCGTAGAG+AGG | 0.656453 | 4_4:-3360040 | Msa0664340:CDS |
| AGAAGTGCACGCCAACGATG+CGG | 0.657729 | 4_4:-3356822 | Msa0664340:CDS |
| AAGTCCACAAGCATTGCAGA+GGG | 0.669436 | 4_4:+3356777 | None:intergenic |
| AATGTGAAGATGCATAAACA+GGG | 0.669888 | 4_4:+3356399 | None:intergenic |
| TGAGTGTCTGATGAGAAATG+GGG | 0.715103 | 4_4:+3360212 | None:intergenic |
| GGTTTGATGGCAGACAACGA+TGG | 0.718774 | 4_4:-3357066 | Msa0664340:CDS |
| AGACACTCATTTCGAACACG+CGG | 0.731780 | 4_4:-3360198 | Msa0664340:CDS |
| GATGAAGTACAAATAAAAGG+CGG | 0.732304 | 4_4:+3355649 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATTGTATAAGAAAA+TGG | - | chr4_4:3358542-3358561 | Msa0664340:intron | 10.0% |
| !! | CACATATAATAAAATAACTT+CGG | + | chr4_4:3357526-3357545 | None:intergenic | 15.0% |
| !!! | AAAATTTTGACAAAAAAGTT+CGG | - | chr4_4:3357673-3357692 | Msa0664340:intron | 15.0% |
| !!! | TAAAAACTAAAAGTGTTTTT+AGG | + | chr4_4:3358351-3358370 | None:intergenic | 15.0% |
| !! | CCATTTATCAAATAATATAA+AGG | + | chr4_4:3359136-3359155 | None:intergenic | 15.0% |
| !! | CCTTTATATTATTTGATAAA+TGG | - | chr4_4:3359133-3359152 | Msa0664340:intron | 15.0% |
| !!! | CAAATTTTGACAAAAATGTT+CGG | - | chr4_4:3355964-3355983 | Msa0664340:intron | 20.0% |
| !! | TTGGACATAAAACAAAATAA+TGG | + | chr4_4:3356404-3356423 | None:intergenic | 20.0% |
| !!! | GATAGATATTTGCTTTTAAA+AGG | - | chr4_4:3356853-3356872 | Msa0664340:CDS | 20.0% |
| !! | CAAAGTTATATCATTCTTTA+TGG | + | chr4_4:3357046-3357065 | None:intergenic | 20.0% |
| !! | ATAACTTTGCAAATTTAAAG+TGG | - | chr4_4:3357057-3357076 | Msa0664340:CDS | 20.0% |
| !!! | TAACTTTGCAAATTTAAAGT+GGG | - | chr4_4:3357058-3357077 | Msa0664340:CDS | 20.0% |
| !!! | TTAATTTTGAATTCCTAACA+AGG | - | chr4_4:3357119-3357138 | Msa0664340:CDS | 20.0% |
| !! | TAAGAAATTGTAAACGAAAA+TGG | - | chr4_4:3357244-3357263 | Msa0664340:intron | 20.0% |
| !!! | TGATAGATATTTGTTTCTTT+TGG | - | chr4_4:3358112-3358131 | Msa0664340:intron | 20.0% |
| !!! | GATAGATATTTGTTTCTTTT+GGG | - | chr4_4:3358113-3358132 | Msa0664340:intron | 20.0% |
| !!! | ATAGATATTTGTTTCTTTTG+GGG | - | chr4_4:3358114-3358133 | Msa0664340:intron | 20.0% |
| !! | ACTATATATTGTTTCAGTTT+CGG | - | chr4_4:3358169-3358188 | Msa0664340:intron | 20.0% |
| !! | CAAAGTTATATCATTCTTTA+TGG | + | chr4_4:3357046-3357065 | None:intergenic | 20.0% |
| !! | CATAAAGAATGATATAACTT+TGG | - | chr4_4:3357044-3357063 | Msa0664340:intron | 20.0% |
| !!! | ATAACTTTGGAAATTTAAAG+TGG | - | chr4_4:3358293-3358312 | Msa0664340:intron | 20.0% |
| !!! | TAACTTTGGAAATTTAAAGT+GGG | - | chr4_4:3358294-3358313 | Msa0664340:intron | 20.0% |
| !! | TTAAATTACTAATAAGGAGA+TGG | - | chr4_4:3358393-3358412 | Msa0664340:CDS | 20.0% |
| !! | TAGAAGATTATCATTACATA+TGG | + | chr4_4:3358669-3358688 | None:intergenic | 20.0% |
| !! | CACATAAAACAAAATAATGT+CGG | + | chr4_4:3358814-3358833 | None:intergenic | 20.0% |
| !! | GTATTCTAATCTATATGTTA+TGG | - | chr4_4:3359048-3359067 | Msa0664340:intron | 20.0% |
| !!! | CTTGAAAATAAAGTCTTATT+TGG | - | chr4_4:3359083-3359102 | Msa0664340:intron | 20.0% |
| !! | ATTAACCTGTAATAATTGTA+TGG | + | chr4_4:3359350-3359369 | None:intergenic | 20.0% |
| !! | TATTGACAAAATTAAGAAGT+TGG | - | chr4_4:3359967-3359986 | Msa0664340:intron | 20.0% |
| ! | ATTGAAGAAACAAGAAGTTA+GGG | + | chr4_4:3355620-3355639 | None:intergenic | 25.0% |
| ! | AATTGAAGAAACAAGAAGTT+AGG | + | chr4_4:3355621-3355640 | None:intergenic | 25.0% |
| ! | TCTTCAATTCAATTCAACAA+TGG | - | chr4_4:3355632-3355651 | Msa0664340:CDS | 25.0% |
| !!! | AAATCTAAACCTTTGAAATC+GGG | + | chr4_4:3355858-3355877 | None:intergenic | 25.0% |
| !!! | GAAATCTAAACCTTTGAAAT+CGG | + | chr4_4:3355859-3355878 | None:intergenic | 25.0% |
| !! | CGAACATTTTTGTCAAAATT+TGG | + | chr4_4:3355966-3355985 | None:intergenic | 25.0% |
| ! | ATTAAGGTATGTGTTTGTAT+AGG | - | chr4_4:3356010-3356029 | Msa0664340:intron | 25.0% |
| ! | TTAAGGTATGTGTTTGTATA+GGG | - | chr4_4:3356011-3356030 | Msa0664340:intron | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+TGG | + | chr4_4:3356138-3356157 | None:intergenic | 25.0% |
| ! | GACATAAAACAAAATAATGG+CGG | + | chr4_4:3356401-3356420 | None:intergenic | 25.0% |
| ! | CAAATACAAGTAACTTCTTT+AGG | - | chr4_4:3356434-3356453 | Msa0664340:CDS | 25.0% |
| !! | TTTAGGATGCAAAGAAATAA+AGG | - | chr4_4:3356451-3356470 | Msa0664340:CDS | 25.0% |
| !!! | ACTGGTTTATTTTTGAACAA+GGG | - | chr4_4:3356596-3356615 | Msa0664340:intron | 25.0% |
| !!! | AGATATTTGCTTTTAAAAGG+AGG | - | chr4_4:3356856-3356875 | Msa0664340:CDS | 25.0% |
| ! | ATTTCAGTTCATATTAGTCA+AGG | - | chr4_4:3356949-3356968 | Msa0664340:intron | 25.0% |
| !!! | TATATCAGTTAAGCTTTAGA+TGG | + | chr4_4:3357000-3357019 | None:intergenic | 25.0% |
| ! | ATATCATTCTTTATGGCATA+AGG | + | chr4_4:3357039-3357058 | None:intergenic | 25.0% |
| !! | AACTTTGCAAATTTAAAGTG+GGG | - | chr4_4:3357059-3357078 | Msa0664340:CDS | 25.0% |
| ! | GAGAAGATAAAAAACAAACT+TGG | - | chr4_4:3357178-3357197 | Msa0664340:intron | 25.0% |
| !! | TTTGAAGTAAAAATGTAAGC+AGG | - | chr4_4:3357306-3357325 | Msa0664340:intron | 25.0% |
| ! | GAGAAGATTATCATTACATA+CGG | + | chr4_4:3357384-3357403 | None:intergenic | 25.0% |
| ! | AAAAATAAGCCAATCCAAAA+GGG | + | chr4_4:3357871-3357890 | None:intergenic | 25.0% |
| ! | AAACAAATATCTATCATTGC+AGG | + | chr4_4:3358108-3358127 | None:intergenic | 25.0% |
| !! | AACTTTGGAAATTTAAAGTG+GGG | - | chr4_4:3358295-3358314 | Msa0664340:intron | 25.0% |
| ! | AATTGTATAAGAAAATGGCA+AGG | - | chr4_4:3358547-3358566 | Msa0664340:intron | 25.0% |
| !! | TATCATTACATATGGTGTTA+AGG | + | chr4_4:3358661-3358680 | None:intergenic | 25.0% |
| ! | CAAATACAAGTAACTTCTTT+AGG | - | chr4_4:3356434-3356453 | Msa0664340:CDS | 25.0% |
| !! | TTTAGGATGCAAAGAAATAA+AGG | - | chr4_4:3356451-3356470 | Msa0664340:CDS | 25.0% |
| !!! | ACTGGTTTATTTTTGAACAA+GGG | - | chr4_4:3356596-3356615 | Msa0664340:intron | 25.0% |
| ! | ATAAAGGACAATTTCAGTAT+AGG | + | chr4_4:3359120-3359139 | None:intergenic | 25.0% |
| !! | TTACAGGTTAATCATGATTT+TGG | - | chr4_4:3359358-3359377 | Msa0664340:intron | 25.0% |
| !!! | ATGTTTTTATTAATTCCACC+TGG | - | chr4_4:3359524-3359543 | Msa0664340:CDS | 25.0% |
| ! | TATATGCAAAAGTTGTTAGT+TGG | - | chr4_4:3359813-3359832 | Msa0664340:intron | 25.0% |
| ! | ATATGCAAAAGTTGTTAGTT+GGG | - | chr4_4:3359814-3359833 | Msa0664340:intron | 25.0% |
| !! | TAACAATCCAAGTTAGTTTA+AGG | - | chr4_4:3360089-3360108 | Msa0664340:CDS | 25.0% |
| TCGACACAACAATGAAATAA+TGG | - | chr4_4:3355701-3355720 | Msa0664340:intron | 30.0% | |
| ! | TTTGGATTGAAGTTTGAGTT+CGG | + | chr4_4:3355727-3355746 | None:intergenic | 30.0% |
| !!! | TTTGGGTTTTTTCTCTGATT+TGG | + | chr4_4:3355784-3355803 | None:intergenic | 30.0% |
| ! | CTGTGAGAAAGTGTAAATTT+GGG | + | chr4_4:3355903-3355922 | None:intergenic | 30.0% |
| ! | TCTGTGAGAAAGTGTAAATT+TGG | + | chr4_4:3355904-3355923 | None:intergenic | 30.0% |
| ! | TGTCAAAATTTGGTTTCTTC+CGG | + | chr4_4:3355956-3355975 | None:intergenic | 30.0% |
| ! | TAACTTTTGTGACTCTGTTT+GGG | + | chr4_4:3356069-3356088 | None:intergenic | 30.0% |
| ! | ATAACTTTTGTGACTCTGTT+TGG | + | chr4_4:3356070-3356089 | None:intergenic | 30.0% |
| AATGGCTCAATATTCTGTTT+GGG | + | chr4_4:3356120-3356139 | None:intergenic | 30.0% | |
| AAATGGCTCAATATTCTGTT+TGG | + | chr4_4:3356121-3356140 | None:intergenic | 30.0% | |
| AAACAGAATATTGAGCCATT+TGG | - | chr4_4:3356120-3356139 | Msa0664340:intron | 30.0% | |
| ! | TTGTATTTGTTAGCAAGTGT+TGG | + | chr4_4:3356423-3356442 | None:intergenic | 30.0% |
| !! | TTACACATTATCTTGCTGTT+GGG | + | chr4_4:3356572-3356591 | None:intergenic | 30.0% |
| ! | AAGATAATGTGTAAGTTGAC+TGG | - | chr4_4:3356578-3356597 | Msa0664340:intron | 30.0% |
| !!! | GACTGGTTTATTTTTGAACA+AGG | - | chr4_4:3356595-3356614 | Msa0664340:intron | 30.0% |
| TATGATTCATAAGCTTGTCA+AGG | - | chr4_4:3356666-3356685 | Msa0664340:intron | 30.0% | |
| AAATATCTATCATTGCAGAC+TGG | + | chr4_4:3356844-3356863 | None:intergenic | 30.0% | |
| !! | TCTTTTGGGAAATAGTATTC+AGG | - | chr4_4:3356892-3356911 | Msa0664340:CDS | 30.0% |
| AATTGTAAACGAAAATGGTG+AGG | - | chr4_4:3357249-3357268 | Msa0664340:intron | 30.0% | |
| ATTGTAAACGAAAATGGTGA+GGG | - | chr4_4:3357250-3357269 | Msa0664340:intron | 30.0% | |
| !! | CTATTACACTGCTTTAAGAA+GGG | + | chr4_4:3357413-3357432 | None:intergenic | 30.0% |
| !! | ACTATTACACTGCTTTAAGA+AGG | + | chr4_4:3357414-3357433 | None:intergenic | 30.0% |
| CAAATACAAGCAACTTCTTT+AGG | - | chr4_4:3357559-3357578 | Msa0664340:intron | 30.0% | |
| ! | TTTAGGATGCAAAGAAGTAA+AGG | - | chr4_4:3357576-3357595 | Msa0664340:intron | 30.0% |
| TAGCATTAAGGTATGTTTAG+AGG | - | chr4_4:3357715-3357734 | Msa0664340:intron | 30.0% | |
| AGCATTAAGGTATGTTTAGA+GGG | - | chr4_4:3357716-3357735 | Msa0664340:intron | 30.0% | |
| CAAAAATAAGCCAATCCAAA+AGG | + | chr4_4:3357872-3357891 | None:intergenic | 30.0% | |
| GTTTCGGTTCATATTAGTTA+AGG | - | chr4_4:3358185-3358204 | Msa0664340:intron | 30.0% | |
| GTTCATATTAGTTAAGGACT+TGG | - | chr4_4:3358191-3358210 | Msa0664340:intron | 30.0% | |
| !! | TATATCAGCTAAGCTTTAGA+TGG | + | chr4_4:3358236-3358255 | None:intergenic | 30.0% |
| AGAGAAGATAGAAACAAACT+AGG | - | chr4_4:3358445-3358464 | Msa0664340:CDS | 30.0% | |
| GTTGAAGTAAAAATGAAAGC+AGG | - | chr4_4:3358604-3358623 | Msa0664340:intron | 30.0% | |
| !! | CTATTACACTGCTTTAAGAA+AGG | + | chr4_4:3357413-3357432 | None:intergenic | 30.0% |
| !!! | GACTGGTTTATTTTTGAACA+AGG | - | chr4_4:3356595-3356614 | Msa0664340:intron | 30.0% |
| TTTCAACTCATATCAGTTGT+AGG | - | chr4_4:3359162-3359181 | Msa0664340:intron | 30.0% | |
| AGCAACATTGGAAAAACAAA+AGG | + | chr4_4:3359327-3359346 | None:intergenic | 30.0% | |
| ATAATTGTATGGAGCAACAT+TGG | + | chr4_4:3359339-3359358 | None:intergenic | 30.0% | |
| TTGCTCCATACAATTATTAC+AGG | - | chr4_4:3359342-3359361 | Msa0664340:intron | 30.0% | |
| ! | CGAATTGGCTTAATATTACA+GGG | + | chr4_4:3359385-3359404 | None:intergenic | 30.0% |
| CCTGTAATATTAAGCCAATT+CGG | - | chr4_4:3359383-3359402 | Msa0664340:intron | 30.0% | |
| ACAATGACAGATAAATGAAG+GGG | + | chr4_4:3359459-3359478 | None:intergenic | 30.0% | |
| CACAATGACAGATAAATGAA+GGG | + | chr4_4:3359460-3359479 | None:intergenic | 30.0% | |
| TCACAATGACAGATAAATGA+AGG | + | chr4_4:3359461-3359480 | None:intergenic | 30.0% | |
| ! | GTTAAAGTGACATACTGATT+TGG | - | chr4_4:3359485-3359504 | Msa0664340:CDS | 30.0% |
| AATGTGAAGATGCATAAACA+GGG | + | chr4_4:3359627-3359646 | None:intergenic | 30.0% | |
| AAATGTGAAGATGCATAAAC+AGG | + | chr4_4:3359628-3359647 | None:intergenic | 30.0% | |
| TTTCAGATTTGCAGGAAAAA+TGG | - | chr4_4:3359756-3359775 | Msa0664340:intron | 30.0% | |
| TTCAGATTTGCAGGAAAAAT+GGG | - | chr4_4:3359757-3359776 | Msa0664340:intron | 30.0% | |
| ! | CAACTTTTGCATATAACCTT+AGG | + | chr4_4:3359808-3359827 | None:intergenic | 30.0% |
| ACAATTCCATCCAATATTGA+TGG | - | chr4_4:3359868-3359887 | Msa0664340:intron | 30.0% | |
| !! | AAGCACTTTAGGAATGATTT+TGG | - | chr4_4:3359925-3359944 | Msa0664340:intron | 30.0% |
| ACAAAATTAAGAAGTTGGAG+AGG | - | chr4_4:3359972-3359991 | Msa0664340:intron | 30.0% | |
| CAAAATTAAGAAGTTGGAGA+GGG | - | chr4_4:3359973-3359992 | Msa0664340:intron | 30.0% | |
| ! | GGTTGTTTGATCTTTAGAAA+AGG | - | chr4_4:3360138-3360157 | Msa0664340:CDS | 30.0% |
| ! | TGTTTGATCTTTAGAAAAGG+TGG | - | chr4_4:3360141-3360160 | Msa0664340:CDS | 30.0% |
| ! | GACTAGGTTTTCTTTTACAA+GGG | - | chr4_4:3360188-3360207 | Msa0664340:CDS | 30.0% |
| !!! | TTTTACAAGGGTGTTCTTTT+GGG | - | chr4_4:3360200-3360219 | Msa0664340:CDS | 30.0% |
| ! | GTTGTATAGGAGTCAATTTT+AGG | - | chr4_4:3360270-3360289 | Msa0664340:CDS | 30.0% |
| !! | TATAGGAGTCAATTTTAGGT+GGG | - | chr4_4:3360274-3360293 | Msa0664340:CDS | 30.0% |
| !!! | CTTTGTTGGTGTTTTATTTC+AGG | - | chr4_4:3360347-3360366 | Msa0664340:CDS | 30.0% |
| GATGAAGTACAAATAAAAGG+CGG | + | chr4_4:3360377-3360396 | None:intergenic | 30.0% | |
| !! | GCCTTTTATTTGTACTTCAT+CGG | - | chr4_4:3360376-3360395 | Msa0664340:exon | 30.0% |
| ACCGATGAAGTACAAATAAA+AGG | + | chr4_4:3360380-3360399 | None:intergenic | 30.0% | |
| GGTAATAATAACCCTCTTGT+TGG | + | chr4_4:3355763-3355782 | None:intergenic | 35.0% | |
| ! | AGAAATGGGGTTTCAGTTTT+GGG | + | chr4_4:3355801-3355820 | None:intergenic | 35.0% |
| ATGAGTGTCTGATGAGAAAT+GGG | + | chr4_4:3355815-3355834 | None:intergenic | 35.0% | |
| AATGAGTGTCTGATGAGAAA+TGG | + | chr4_4:3355816-3355835 | None:intergenic | 35.0% | |
| !! | GTGAAGTAGGAGTTTTATGA+TGG | + | chr4_4:3355881-3355900 | None:intergenic | 35.0% |
| AGTGTAAATTTGGGTGAAGT+AGG | + | chr4_4:3355894-3355913 | None:intergenic | 35.0% | |
| !! | TTCTCACAGATTAGCTTCAT+TGG | - | chr4_4:3355914-3355933 | Msa0664340:intron | 35.0% |
| ! | TGGTTACATTTTGCCAAAAC+CGG | - | chr4_4:3355934-3355953 | Msa0664340:intron | 35.0% |
| !! | AATTTGGTTTCTTCCGGTTT+TGG | + | chr4_4:3355950-3355969 | None:intergenic | 35.0% |
| GAATATTGAGCCATTTGGAT+TGG | - | chr4_4:3356125-3356144 | Msa0664340:intron | 35.0% | |
| TGATTCATAAGCTTGTGTCA+AGG | - | chr4_4:3356202-3356221 | Msa0664340:intron | 35.0% | |
| ! | CTTACACATTATCTTGCTGT+TGG | + | chr4_4:3356573-3356592 | None:intergenic | 35.0% |
| ! | AACTATGGACTTGTTTGGAT+TGG | + | chr4_4:3356808-3356827 | None:intergenic | 35.0% |
| AATCCAAACAAGTCCATAGT+TGG | - | chr4_4:3356807-3356826 | Msa0664340:CDS | 35.0% | |
| GTTCATATTAGTCAAGGACT+TGG | - | chr4_4:3356955-3356974 | Msa0664340:intron | 35.0% | |
| TTGAATTCCTAACAAGGAGA+TGG | - | chr4_4:3357125-3357144 | Msa0664340:CDS | 35.0% | |
| GAAAATGGTGAGGGAAATAT+TGG | - | chr4_4:3357259-3357278 | Msa0664340:intron | 35.0% | |
| ! | TGGACTTGGTAGATGTAAAT+CGG | + | chr4_4:3357602-3357621 | None:intergenic | 35.0% |
| ! | ATAAGTTTTGCGAGACTCTT+TGG | + | chr4_4:3357804-3357823 | None:intergenic | 35.0% |
| AAAAGGGTCAATGTTCTGTT+TGG | + | chr4_4:3357855-3357874 | None:intergenic | 35.0% | |
| ! | AAACAGAACATTGACCCTTT+TGG | - | chr4_4:3357854-3357873 | Msa0664340:intron | 35.0% |
| GGGGATTTGATGAATACATT+TGG | - | chr4_4:3357078-3357097 | Msa0664340:CDS | 35.0% | |
| ATCACATATGTTTGCGACAT+AGG | + | chr4_4:3358423-3358442 | None:intergenic | 35.0% | |
| GAAAATGGCAAGGAAAATGT+TGG | - | chr4_4:3358557-3358576 | Msa0664340:intron | 35.0% | |
| ACTCAGCATATAAACTTGAC+AGG | + | chr4_4:3358745-3358764 | None:intergenic | 35.0% | |
| AAATAATGTCGGTCAGAACA+TGG | + | chr4_4:3358803-3358822 | None:intergenic | 35.0% | |
| TTACACATTATCCTGCTGTT+GGG | + | chr4_4:3358985-3359004 | None:intergenic | 35.0% | |
| ! | AGTTGTAGGCATTGTAACAT+CGG | - | chr4_4:3359176-3359195 | Msa0664340:intron | 35.0% |
| TGTGGGCAAATAAGGTAAAT+GGG | - | chr4_4:3359270-3359289 | Msa0664340:intron | 35.0% | |
| ! | CCGAATTGGCTTAATATTAC+AGG | + | chr4_4:3359386-3359405 | None:intergenic | 35.0% |
| ATACGGAAACAAAACCGAAT+TGG | + | chr4_4:3359400-3359419 | None:intergenic | 35.0% | |
| GATAAATGAAGGGGAAAAAG+TGG | + | chr4_4:3359450-3359469 | None:intergenic | 35.0% | |
| ACAATGAAGGAGAAGATGAA+TGG | + | chr4_4:3359582-3359601 | None:intergenic | 35.0% | |
| TCATCTTCTACTGAATCGTA+TGG | - | chr4_4:3359676-3359695 | Msa0664340:intron | 35.0% | |
| TTCCTGCAAATCTGAAAAGA+AGG | + | chr4_4:3359753-3359772 | None:intergenic | 35.0% | |
| ATTCCATCCAATATTGATGG+TGG | - | chr4_4:3359871-3359890 | Msa0664340:intron | 35.0% | |
| TTGCAACATACGTGAAATGA+AGG | - | chr4_4:3359894-3359913 | Msa0664340:intron | 35.0% | |
| !!! | AGGTTTTTCTGAAGCACTTT+AGG | - | chr4_4:3359914-3359933 | Msa0664340:intron | 35.0% |
| AACGAAGAACTTACTCATGA+TGG | - | chr4_4:3359997-3360016 | Msa0664340:intron | 35.0% | |
| ! | CAATCCAAGTTAGTTTAAGG+TGG | - | chr4_4:3360092-3360111 | Msa0664340:CDS | 35.0% |
| ! | ATCTTTAGAAAAGGTGGATG+TGG | - | chr4_4:3360147-3360166 | Msa0664340:CDS | 35.0% |
| ! | GGACTAGGTTTTCTTTTACA+AGG | - | chr4_4:3360187-3360206 | Msa0664340:CDS | 35.0% |
| !!! | CTTTTACAAGGGTGTTCTTT+TGG | - | chr4_4:3360199-3360218 | Msa0664340:CDS | 35.0% |
| !!! | TTTACAAGGGTGTTCTTTTG+GGG | - | chr4_4:3360201-3360220 | Msa0664340:CDS | 35.0% |
| ! | GTATAGGAGTCAATTTTAGG+TGG | - | chr4_4:3360273-3360292 | Msa0664340:CDS | 35.0% |
| !! | ATAGGAGTCAATTTTAGGTG+GGG | - | chr4_4:3360275-3360294 | Msa0664340:CDS | 35.0% |
| ! | TTAGGTGGGGATGTTTATTT+TGG | - | chr4_4:3360288-3360307 | Msa0664340:CDS | 35.0% |
| ! | GAGAAATGGGGTTTCAGTTT+TGG | + | chr4_4:3355802-3355821 | None:intergenic | 40.0% |
| TGAGTGTCTGATGAGAAATG+GGG | + | chr4_4:3355814-3355833 | None:intergenic | 40.0% | |
| GGTATTTCACCCGATTTCAA+AGG | - | chr4_4:3355846-3355865 | Msa0664340:intron | 40.0% | |
| TTCGTAGAGAGGTAGCATTA+AGG | - | chr4_4:3355994-3356013 | Msa0664340:intron | 40.0% | |
| TGGACTTGGCAGATGTAAAT+CGG | + | chr4_4:3356477-3356496 | None:intergenic | 40.0% | |
| !! | GCATCGACTGAAATGAATTG+CGG | - | chr4_4:3356511-3356530 | Msa0664340:intron | 40.0% |
| ATGAATTGCGGAACAAGTGA+AGG | - | chr4_4:3356523-3356542 | Msa0664340:intron | 40.0% | |
| ! | GCTCACTCAGTGTTTCTTTT+GGG | - | chr4_4:3356878-3356897 | Msa0664340:CDS | 40.0% |
| AAGTCTTCCATCTCCTTGTT+AGG | + | chr4_4:3357135-3357154 | None:intergenic | 40.0% | |
| ! | AGAACTCCATTGGAGTGTTA+GGG | + | chr4_4:3357352-3357371 | None:intergenic | 40.0% |
| ACTCAGCAGATAAACTTGAC+AGG | + | chr4_4:3357460-3357479 | None:intergenic | 40.0% | |
| TCGGTATAATGTTCGTAGAG+AGG | - | chr4_4:3357692-3357711 | Msa0664340:intron | 40.0% | |
| TTCGTAGAGAGGTAGCATTA+AGG | - | chr4_4:3355994-3356013 | Msa0664340:intron | 40.0% | |
| ! | GAACATTGACCCTTTTGGAT+TGG | - | chr4_4:3357859-3357878 | Msa0664340:intron | 40.0% |
| CAATCCAAACGAGTTCATAG+TGG | - | chr4_4:3358071-3358090 | Msa0664340:intron | 40.0% | |
| !! | CTTTTGGGGAAATAGTGTTC+TGG | - | chr4_4:3358128-3358147 | Msa0664340:intron | 40.0% |
| ! | ATGGTGTTAAGGCAGTGTTA+GGG | + | chr4_4:3358650-3358669 | None:intergenic | 40.0% |
| ! | TATGGTGTTAAGGCAGTGTT+AGG | + | chr4_4:3358651-3358670 | None:intergenic | 40.0% |
| TGGACTTGGCAGATGTAAAT+CGG | + | chr4_4:3356477-3356496 | None:intergenic | 40.0% | |
| ATGAATTGCGGAACAAGTGA+AGG | - | chr4_4:3356523-3356542 | Msa0664340:intron | 40.0% | |
| CTTACACATTATCCTGCTGT+TGG | + | chr4_4:3358986-3359005 | None:intergenic | 40.0% | |
| AGGATAATGTGTAAGCAGAC+TGG | - | chr4_4:3358991-3359010 | Msa0664340:intron | 40.0% | |
| CTGTGGGCAAATAAGGTAAA+TGG | - | chr4_4:3359269-3359288 | Msa0664340:intron | 40.0% | |
| CTTCTTCTTCCTCTTGGTTT+AGG | - | chr4_4:3359551-3359570 | Msa0664340:CDS | 40.0% | |
| ATGGTCAAACCTAAACCAAG+AGG | + | chr4_4:3359563-3359582 | None:intergenic | 40.0% | |
| GAGATGCGAAGAAACAATGA+AGG | + | chr4_4:3359595-3359614 | None:intergenic | 40.0% | |
| TGAAACATAAGCCCAGTCAA+TGG | + | chr4_4:3359728-3359747 | None:intergenic | 40.0% | |
| ! | TGCCTTCTTTTCAGATTTGC+AGG | - | chr4_4:3359748-3359767 | Msa0664340:intron | 40.0% |
| AGATTTGCAGGAAAAATGGG+AGG | - | chr4_4:3359760-3359779 | Msa0664340:intron | 40.0% | |
| CAACCACCATCAATATTGGA+TGG | + | chr4_4:3359877-3359896 | None:intergenic | 40.0% | |
| GTTGCAACCACCATCAATAT+TGG | + | chr4_4:3359881-3359900 | None:intergenic | 40.0% | |
| !! | TGATGGCTTTGATGATGTCT+TGG | - | chr4_4:3360014-3360033 | Msa0664340:intron | 40.0% |
| CTCTCCACCTTAAACTAACT+TGG | + | chr4_4:3360099-3360118 | None:intergenic | 40.0% | |
| ! | GTTAGTTTAAGGTGGAGAGT+AGG | - | chr4_4:3360100-3360119 | Msa0664340:CDS | 40.0% |
| !!! | TTACAAGGGTGTTCTTTTGG+GGG | - | chr4_4:3360202-3360221 | Msa0664340:CDS | 40.0% |
| AGTAGTGACGATGAGTGTTA+TGG | - | chr4_4:3360227-3360246 | Msa0664340:CDS | 40.0% | |
| !!! | TTATGGATGCCGTTTTTCAG+TGG | - | chr4_4:3360244-3360263 | Msa0664340:CDS | 40.0% |
| TACAACCGACCACTGAAAAA+CGG | + | chr4_4:3360256-3360275 | None:intergenic | 40.0% | |
| ! | TTTTCAGTGGTCGGTTGTAT+AGG | - | chr4_4:3360257-3360276 | Msa0664340:CDS | 40.0% |
| !!! | GTGGGGATGTTTATTTTGGT+GGG | - | chr4_4:3360292-3360311 | Msa0664340:CDS | 40.0% |
| AACCCTCTTGTTGGAGAGTT+GGG | + | chr4_4:3355754-3355773 | None:intergenic | 45.0% | |
| TAACCCTCTTGTTGGAGAGT+TGG | + | chr4_4:3355755-3355774 | None:intergenic | 45.0% | |
| AGACACTCATTTCGAACACG+CGG | - | chr4_4:3355825-3355844 | Msa0664340:intron | 45.0% | |
| TCGGTGTAATGTTCGTAGAG+AGG | - | chr4_4:3355983-3356002 | Msa0664340:intron | 45.0% | |
| AAATAATGGCGGTCAGAACG+TGG | + | chr4_4:3356390-3356409 | None:intergenic | 45.0% | |
| CGGAACAAGTGAAGGTTTGA+TGG | - | chr4_4:3356531-3356550 | Msa0664340:intron | 45.0% | |
| ! | GGTTTGATGGCAGACAATGA+TGG | - | chr4_4:3356544-3356563 | Msa0664340:intron | 45.0% |
| ! | CTGCCAACTATGGACTTGTT+TGG | + | chr4_4:3356813-3356832 | None:intergenic | 45.0% |
| GGTCAATGAACTGCCAACTA+TGG | + | chr4_4:3356823-3356842 | None:intergenic | 45.0% | |
| ! | GGCTCACTCAGTGTTTCTTT+TGG | - | chr4_4:3356877-3356896 | Msa0664340:CDS | 45.0% |
| AACTGACCCTAACACTCCAA+TGG | - | chr4_4:3357343-3357362 | Msa0664340:intron | 45.0% | |
| ! | CAGAACTCCATTGGAGTGTT+AGG | + | chr4_4:3357353-3357372 | None:intergenic | 45.0% |
| GTGTTCAGACAGAACTCCAT+TGG | + | chr4_4:3357362-3357381 | None:intergenic | 45.0% | |
| CTGAAATGAGTTGCGAAACG+CGG | - | chr4_4:3357643-3357662 | Msa0664340:intron | 45.0% | |
| GAGCTTATGCGAAGCAACTT+AGG | - | chr4_4:3357891-3357910 | Msa0664340:intron | 45.0% | |
| ACTGCCACTATGAACTCGTT+TGG | + | chr4_4:3358078-3358097 | None:intergenic | 45.0% | |
| AGACTCATCATGGTTGGACT+TGG | + | chr4_4:3358904-3358923 | None:intergenic | 45.0% | |
| CAACCATGATGAGTCTGCAT+CGG | - | chr4_4:3358908-3358927 | Msa0664340:intron | 45.0% | |
| !! | GCATCGGCTGAAATGAATTG+CGG | - | chr4_4:3358924-3358943 | Msa0664340:intron | 45.0% |
| CGGAACAAGTGAAGGTTTGA+TGG | - | chr4_4:3356531-3356550 | Msa0664340:intron | 45.0% | |
| ! | AAGTCCACAAGCATTGCAGA+GGG | + | chr4_4:3359249-3359268 | None:intergenic | 45.0% |
| CAATGCTTGTGGACTTCTGT+GGG | - | chr4_4:3359253-3359272 | Msa0664340:intron | 45.0% | |
| TGGACTTCTGTGGGCAAATA+AGG | - | chr4_4:3359262-3359281 | Msa0664340:intron | 45.0% | |
| AGAGGAAGAAGAAGAATGCC+AGG | + | chr4_4:3359545-3359564 | None:intergenic | 45.0% | |
| GGCATTCTTCTTCTTCCTCT+TGG | - | chr4_4:3359545-3359564 | Msa0664340:CDS | 45.0% | |
| ! | TCTGTTCGTAGCCATTGACT+GGG | - | chr4_4:3359714-3359733 | Msa0664340:intron | 45.0% |
| AATGGGAGGTAGTAGAAGAC+TGG | - | chr4_4:3359774-3359793 | Msa0664340:intron | 45.0% | |
| ATGGGAGGTAGTAGAAGACT+GGG | - | chr4_4:3359775-3359794 | Msa0664340:intron | 45.0% | |
| CAGTTTGAGTGATGAGGACT+AGG | - | chr4_4:3360172-3360191 | Msa0664340:CDS | 45.0% | |
| !!! | GGTGGGGATGTTTATTTTGG+TGG | - | chr4_4:3360291-3360310 | Msa0664340:CDS | 45.0% |
| ! | TTTGGTGGGTGTTGTCCTTA+TGG | - | chr4_4:3360306-3360325 | Msa0664340:CDS | 45.0% |
| ! | TTGGTGGGTGTTGTCCTTAT+GGG | - | chr4_4:3360307-3360326 | Msa0664340:CDS | 45.0% |
| ACACCAACAAAGACACTCTG+CGG | + | chr4_4:3360339-3360358 | None:intergenic | 45.0% | |
| !!! | TTAATTTTAAATTACTAATA+AGG | - | chr4_4:3358387-3358406 | Msa0664340:CDS | 5.0% |
| !!! | TCTAAATTTTTTATTTTATA+CGG | + | chr4_4:3359417-3359436 | None:intergenic | 5.0% |
| CTCCCAACTCTCCAACAAGA+GGG | - | chr4_4:3355749-3355768 | Msa0664340:intron | 50.0% | |
| GCAGACATCAGCAACTCGTT+TGG | + | chr4_4:3356347-3356366 | None:intergenic | 50.0% | |
| AGACTCGTCATGGTTGGACT+TGG | + | chr4_4:3356491-3356510 | None:intergenic | 50.0% | |
| AGACTCGTCAAGGTTGGACT+TGG | + | chr4_4:3357616-3357635 | None:intergenic | 50.0% | |
| TGATGCAGACTCGTCAAGGT+TGG | + | chr4_4:3357622-3357641 | None:intergenic | 50.0% | |
| AATGAGTTGCGAAACGCGGA+AGG | - | chr4_4:3357647-3357666 | Msa0664340:intron | 50.0% | |
| CGATGCAGACTCATCATGGT+TGG | + | chr4_4:3358910-3358929 | None:intergenic | 50.0% | |
| ! | GGTTTGATGGCAGACAACGA+TGG | - | chr4_4:3358957-3358976 | Msa0664340:intron | 50.0% |
| ! | CAAGCATTGCAGAGGGTTCT+TGG | + | chr4_4:3359242-3359261 | None:intergenic | 50.0% |
| AGAACCCTCTGCAATGCTTG+TGG | - | chr4_4:3359242-3359261 | Msa0664340:intron | 50.0% | |
| ! | GAAGTCCACAAGCATTGCAG+AGG | + | chr4_4:3359250-3359269 | None:intergenic | 50.0% |
| GCAATGCTTGTGGACTTCTG+TGG | - | chr4_4:3359252-3359271 | Msa0664340:intron | 50.0% | |
| GGAAGAAGAAGAATGCCAGG+TGG | + | chr4_4:3359542-3359561 | None:intergenic | 50.0% | |
| CTCTGTTCGTAGCCATTGAC+TGG | - | chr4_4:3359713-3359732 | Msa0664340:intron | 50.0% | |
| AAGACTGGGCGTTCAACCTA+AGG | - | chr4_4:3359789-3359808 | Msa0664340:intron | 50.0% | |
| GTGGCTCAGTTTGAGTGATG+AGG | - | chr4_4:3360166-3360185 | Msa0664340:CDS | 50.0% | |
| !!! | GGATGCCGTTTTTCAGTGGT+CGG | - | chr4_4:3360248-3360267 | Msa0664340:CDS | 50.0% |
| ! | TGACCGCAGAGTGTCTTTGT+TGG | - | chr4_4:3360333-3360352 | Msa0664340:CDS | 50.0% |
| GTCTCTGTTCGTCTTGTGCA+GGG | - | chr4_4:3360398-3360417 | Msa0664340:five_prime_UTR | 50.0% | |
| GTTGGAGAGTTGGGAGGCTT+TGG | + | chr4_4:3355745-3355764 | None:intergenic | 55.0% | |
| CCTCTTGTTGGAGAGTTGGG+AGG | + | chr4_4:3355751-3355770 | None:intergenic | 55.0% | |
| CCTCCCAACTCTCCAACAAG+AGG | - | chr4_4:3355748-3355767 | Msa0664340:intron | 55.0% | |
| CGATGCAGACTCGTCATGGT+TGG | + | chr4_4:3356497-3356516 | None:intergenic | 55.0% | |
| CAGTCGATGCAGACTCGTCA+TGG | + | chr4_4:3356501-3356520 | None:intergenic | 55.0% | |
| CAGCTGATGCAGACTCGTCA+AGG | + | chr4_4:3357626-3357645 | None:intergenic | 55.0% | |
| CAGCCGATGCAGACTCATCA+TGG | + | chr4_4:3358914-3358933 | None:intergenic | 55.0% | |
| CAACGATGGATCCCAACAGC+AGG | - | chr4_4:3358971-3358990 | Msa0664340:intron | 55.0% | |
| ! | AGAAGTGCACGCCAACGATG+CGG | - | chr4_4:3359201-3359220 | Msa0664340:intron | 55.0% |
| GTGGAGAGTAGGTTGTGCAG+TGG | - | chr4_4:3360111-3360130 | Msa0664340:CDS | 55.0% | |
| GAGAGTAGGTTGTGCAGTGG+TGG | - | chr4_4:3360114-3360133 | Msa0664340:CDS | 55.0% | |
| AGTAGGTTGTGCAGTGGTGG+AGG | - | chr4_4:3360117-3360136 | Msa0664340:CDS | 55.0% | |
| CTCTGCGGTCAACACCCATA+AGG | + | chr4_4:3360324-3360343 | None:intergenic | 55.0% | |
| GGTCTCTGTTCGTCTTGTGC+AGG | - | chr4_4:3360397-3360416 | Msa0664340:five_prime_UTR | 55.0% | |
| CAGAGGGTTCTTGGCCCTTC+AGG | + | chr4_4:3359233-3359252 | None:intergenic | 60.0% | |
| TCAGGTCCACGCCGCATCGT+TGG | + | chr4_4:3359215-3359234 | None:intergenic | 65.0% | |
| ACGATGCGGCGTGGACCTGA+AGG | - | chr4_4:3359215-3359234 | Msa0664340:intron | 65.0% | |
| CGATGCGGCGTGGACCTGAA+GGG | - | chr4_4:3359216-3359235 | Msa0664340:intron | 65.0% | |
| TGCACGCCAACGATGCGGCG+TGG | - | chr4_4:3359206-3359225 | Msa0664340:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 3355612 | 3360433 | 3355612 | ID=Msa0664340;Name=Msa0664340 |
| chr4_4 | mRNA | 3355612 | 3360433 | 3355612 | ID=Msa0664340-mRNA-1;Parent=Msa0664340;Name=Msa0664340-mRNA-1;_AED=0.17;_eAED=0.17;_QI=39|0.37|0.44|0.66|1|1|9|0|422 |
| chr4_4 | exon | 3355612 | 3355676 | 3355612 | ID=Msa0664340-mRNA-1:exon:1055;Parent=Msa0664340-mRNA-1 |
| chr4_4 | exon | 3355776 | 3355836 | 3355776 | ID=Msa0664340-mRNA-1:exon:1054;Parent=Msa0664340-mRNA-1 |
| chr4_4 | exon | 3356235 | 3356283 | 3356235 | ID=Msa0664340-mRNA-1:exon:1053;Parent=Msa0664340-mRNA-1 |
| chr4_4 | exon | 3356353 | 3356472 | 3356353 | ID=Msa0664340-mRNA-1:exon:1052;Parent=Msa0664340-mRNA-1 |
| chr4_4 | exon | 3356762 | 3356962 | 3356762 | ID=Msa0664340-mRNA-1:exon:1051;Parent=Msa0664340-mRNA-1 |
| chr4_4 | exon | 3357045 | 3357176 | 3357045 | ID=Msa0664340-mRNA-1:exon:1050;Parent=Msa0664340-mRNA-1 |
| chr4_4 | exon | 3358321 | 3358464 | 3358321 | ID=Msa0664340-mRNA-1:exon:1049;Parent=Msa0664340-mRNA-1 |
| chr4_4 | exon | 3359458 | 3359589 | 3359458 | ID=Msa0664340-mRNA-1:exon:1048;Parent=Msa0664340-mRNA-1 |
| chr4_4 | exon | 3360030 | 3360433 | 3360030 | ID=Msa0664340-mRNA-1:exon:1047;Parent=Msa0664340-mRNA-1 |
| chr4_4 | five_prime_UTR | 3360395 | 3360433 | 3360395 | ID=Msa0664340-mRNA-1:five_prime_utr;Parent=Msa0664340-mRNA-1 |
| chr4_4 | CDS | 3360030 | 3360394 | 3360030 | ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1 |
| chr4_4 | CDS | 3359458 | 3359589 | 3359458 | ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1 |
| chr4_4 | CDS | 3358321 | 3358464 | 3358321 | ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1 |
| chr4_4 | CDS | 3357045 | 3357176 | 3357045 | ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1 |
| chr4_4 | CDS | 3356762 | 3356962 | 3356762 | ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1 |
| chr4_4 | CDS | 3356353 | 3356472 | 3356353 | ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1 |
| chr4_4 | CDS | 3356235 | 3356283 | 3356235 | ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1 |
| chr4_4 | CDS | 3355776 | 3355836 | 3355776 | ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1 |
| chr4_4 | CDS | 3355612 | 3355676 | 3355612 | ID=Msa0664340-mRNA-1:cds;Parent=Msa0664340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
