Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543720 | XP_013455612.2 | 89.414 | 444 | 18 | 4 | 1 | 420 | 58 | 496 | 0.0 | 791 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543720 | sp|Q6H7U2|C3H13_ORYSJ | 33.557 | 447 | 218 | 17 | 8 | 406 | 11 | 426 | 4.82e-50 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543720 | A0A396I3R9 | 89.414 | 444 | 18 | 4 | 1 | 420 | 58 | 496 | 0.0 | 791 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0543720 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0543720 | Msa0638280 | 0.804417 | 2.181569e-49 | -8.615850e-47 |
| Msa0543720 | Msa0677270 | 0.801153 | 1.029894e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543720 | MtrunA17_Chr4g0024081 | 89.414 | 444 | 18 | 4 | 1 | 420 | 58 | 496 | 0.0 | 791 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543720 | AT3G21810.1 | 34.237 | 295 | 152 | 8 | 8 | 263 | 7 | 298 | 1.00e-35 | 137 |
| Msa0543720 | AT3G21810.2 | 32.500 | 240 | 132 | 5 | 51 | 263 | 38 | 274 | 8.36e-23 | 100 |
Find 105 sgRNAs with CRISPR-Local
Find 520 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATCACCAAACATAATT+TGG | 0.129454 | 4_1:+30677089 | Msa0543720:CDS |
| GCGGATCTCCTTGCAGAAAA+AGG | 0.236552 | 4_1:+30677121 | Msa0543720:CDS |
| GTTCCTGAATTCTAGAATTA+AGG | 0.245226 | 4_1:-30676572 | None:intergenic |
| TAGCCTTAATTCTAGAATTC+AGG | 0.264978 | 4_1:+30676569 | Msa0543720:CDS |
| TTCTCAGACATTTCTAGAAT+TGG | 0.297684 | 4_1:+30677006 | Msa0543720:CDS |
| TGATAATGGAATGGCATTAC+AGG | 0.320982 | 4_1:+30678357 | Msa0543720:CDS |
| TTGCTGCGGGGAATCAAATC+TGG | 0.330633 | 4_1:-30678406 | None:intergenic |
| AAGAGGATGGGGAGTGTAAA+AGG | 0.350759 | 4_1:+30676613 | Msa0543720:CDS |
| GCAGGAAAGAGAGACTATTT+AGG | 0.365279 | 4_1:+30673437 | Msa0543720:intron |
| TAGAAATACTCTTGAGGATC+AGG | 0.371223 | 4_1:+30675047 | Msa0543720:CDS |
| TGAAAATTCACCATTATAGT+TGG | 0.375369 | 4_1:-30671037 | None:intergenic |
| GAAAACACAAGAAAGGAATA+TGG | 0.376155 | 4_1:+30677963 | Msa0543720:CDS |
| AGTGGCCAAAGTGATATTTC+TGG | 0.381454 | 4_1:+30674958 | Msa0543720:CDS |
| GGTTGACGGCACTTCAATCC+TGG | 0.385159 | 4_1:-30678248 | None:intergenic |
| TCAAGGACAGAAAATGATAA+TGG | 0.388686 | 4_1:+30678343 | Msa0543720:CDS |
| GTTACTTCAACTCCATTGTC+AGG | 0.404300 | 4_1:-30677920 | None:intergenic |
| TCCAAATTATGTTTGGTGAT+TGG | 0.421141 | 4_1:-30677090 | None:intergenic |
| CAGAAGACATAGGAGAAAAC+AGG | 0.454769 | 4_1:+30674930 | Msa0543720:CDS |
| GACAAAACTAACCGATAGTT+GGG | 0.456546 | 4_1:-30675216 | None:intergenic |
| GTTCTGTTCCAAATTATGTT+TGG | 0.459172 | 4_1:-30677097 | None:intergenic |
| TCTCGAGCCGGTGAATATCT+TGG | 0.463968 | 4_1:-30673506 | None:intergenic |
| AAACGTGCATGCAGGGCATT+CGG | 0.468056 | 4_1:+30677820 | Msa0543720:intron |
| TTTAGGTAATAATGACTTGA+GGG | 0.469756 | 4_1:+30673454 | Msa0543720:CDS |
| ACAACACGCTCGACGCAACT+TGG | 0.469935 | 4_1:+30670864 | Msa0543720:five_prime_UTR |
| AGACAAAACTAACCGATAGT+TGG | 0.470883 | 4_1:-30675217 | None:intergenic |
| GTAAGCAATGGTGAGAATAC+TGG | 0.475904 | 4_1:+30677060 | Msa0543720:CDS |
| ATGAAGGAGTGAAGAAAGAG+TGG | 0.479166 | 4_1:-30670739 | None:intergenic |
| GTTCTGTACTTGTCTTTGCA+TGG | 0.490119 | 4_1:+30678771 | Msa0543720:three_prime_UTR |
| CTTTAGTACGTGTCTTTGCA+TGG | 0.494761 | 4_1:+30678736 | Msa0543720:three_prime_UTR |
| CGACCTCTTGCCTCTCGAGC+CGG | 0.496526 | 4_1:-30673518 | None:intergenic |
| TGCTGCGGGGAATCAAATCT+GGG | 0.499304 | 4_1:-30678405 | None:intergenic |
| CAACAACATTCAGTCAGAAA+AGG | 0.500378 | 4_1:+30677997 | Msa0543720:CDS |
| TTCTAGAATTCAGGAACTTG+AGG | 0.500849 | 4_1:+30676578 | Msa0543720:CDS |
| CAGGTCCGACTTCAAAGGTT+CGG | 0.509285 | 4_1:+30676973 | Msa0543720:CDS |
| ACTTCAATCCTGGATTCCTT+CGG | 0.509539 | 4_1:-30678238 | None:intergenic |
| TCCCCGCAGCAATTATTCAC+AGG | 0.509785 | 4_1:+30678417 | Msa0543720:CDS |
| TATTGAAAACATGAATATGT+TGG | 0.511846 | 4_1:+30678659 | Msa0543720:three_prime_UTR |
| AGCGTTGATATTGTAAGCAA+TGG | 0.513750 | 4_1:+30677048 | Msa0543720:CDS |
| CTGATACTAATGAAACTTCA+AGG | 0.514385 | 4_1:+30678326 | Msa0543720:CDS |
| AACTTCCAGAAATATCACTT+TGG | 0.517782 | 4_1:-30674963 | None:intergenic |
| AAATTATGTTTGGTGATTGG+AGG | 0.521526 | 4_1:-30677087 | None:intergenic |
| ACTAGGCACCAAGATCTTGA+AGG | 0.524279 | 4_1:+30677941 | Msa0543720:CDS |
| AACCTGTGAATAATTGCTGC+GGG | 0.525149 | 4_1:-30678419 | None:intergenic |
| GTTGATATTGAGCATGATAA+CGG | 0.525710 | 4_1:+30678301 | Msa0543720:CDS |
| ACATACAGCCGAAGGAATCC+AGG | 0.526971 | 4_1:+30678230 | Msa0543720:intron |
| CTCAGTTAAACAAAGAGGAT+GGG | 0.527683 | 4_1:+30676601 | Msa0543720:CDS |
| ATCACCTCCAAGATATTCAC+CGG | 0.528176 | 4_1:+30673499 | Msa0543720:CDS |
| TGGAATGGCATTACAGGTGA+AGG | 0.528941 | 4_1:+30678363 | Msa0543720:CDS |
| GAAAAGTTGAAGAAGAATGA+AGG | 0.529515 | 4_1:-30670755 | None:intergenic |
| CTTGAAGGAAAACACAAGAA+AGG | 0.535513 | 4_1:+30677956 | Msa0543720:CDS |
| TTCTAGAATTGGTGCTGATG+AGG | 0.537743 | 4_1:+30677017 | Msa0543720:CDS |
| TGAGGTCTCCAGAGAAAAGA+AGG | 0.539215 | 4_1:+30673981 | Msa0543720:CDS |
| GCTCAGTTAAACAAAGAGGA+TGG | 0.540853 | 4_1:+30676600 | Msa0543720:CDS |
| GGAAGAAAATCGTCGAAGCT+CGG | 0.540943 | 4_1:-30671016 | None:intergenic |
| TCAACTTTGAACAATTCGAT+CGG | 0.545191 | 4_1:-30670894 | None:intergenic |
| AGAGGTCGGCAGACCATTCG+CGG | 0.553269 | 4_1:+30673533 | Msa0543720:CDS |
| CTTCTTGAACACTCTCATCC+AGG | 0.556266 | 4_1:-30676542 | None:intergenic |
| ATCTTGTGTCTAACCGCGAA+TGG | 0.556846 | 4_1:-30673546 | None:intergenic |
| CGAGCCGGTGAATATCTTGG+AGG | 0.558434 | 4_1:-30673503 | None:intergenic |
| GACAGAAAATGATAATGGAA+TGG | 0.562419 | 4_1:+30678348 | Msa0543720:CDS |
| TTACTTCAACTCCATTGTCA+GGG | 0.564290 | 4_1:-30677919 | None:intergenic |
| AAGATATTCACCGGCTCGAG+AGG | 0.567135 | 4_1:+30673508 | Msa0543720:CDS |
| TGTGAGGAGGCCCCTGACAA+TGG | 0.567240 | 4_1:+30677908 | Msa0543720:CDS |
| TAACTTAATGTGCAGTATGA+GGG | 0.569651 | 4_1:+30678517 | Msa0543720:intron |
| GATCACAGGTCCGACTTCAA+AGG | 0.571245 | 4_1:+30676968 | Msa0543720:intron |
| GACAACATGAGCTGCCATGC+TGG | 0.571700 | 4_1:-30678269 | None:intergenic |
| AGCAGCAGCACATGTGGACA+TGG | 0.572941 | 4_1:+30678582 | Msa0543720:CDS |
| TCGGTTGAAACAGCAAGAAG+TGG | 0.579611 | 4_1:+30677839 | Msa0543720:CDS |
| GGATGAGAGTGTTCAAGAAG+TGG | 0.580126 | 4_1:+30676545 | Msa0543720:CDS |
| TCAGTTAAACAAAGAGGATG+GGG | 0.582580 | 4_1:+30676602 | Msa0543720:CDS |
| GAACCGAAAATCCCAACTAT+CGG | 0.583849 | 4_1:+30675205 | Msa0543720:CDS |
| TGAGCTGCCATGCTGGTTGA+CGG | 0.590544 | 4_1:-30678262 | None:intergenic |
| ATTTAGGTAATAATGACTTG+AGG | 0.602441 | 4_1:+30673453 | Msa0543720:CDS |
| GATCTCCGAACCTTTGAAGT+CGG | 0.606184 | 4_1:-30676978 | None:intergenic |
| GCATGCAGAACGAGATTCTG+TGG | 0.609093 | 4_1:+30677146 | Msa0543720:CDS |
| CGGTTGAAACAGCAAGAAGT+GGG | 0.611761 | 4_1:+30677840 | Msa0543720:CDS |
| AAACAGCAAGAAGTGGGAAG+CGG | 0.617248 | 4_1:+30677846 | Msa0543720:CDS |
| AAGAGTATTTCTAGAACCAG+AGG | 0.619782 | 4_1:-30675037 | None:intergenic |
| TACTTCAACTCCATTGTCAG+GGG | 0.624441 | 4_1:-30677918 | None:intergenic |
| GGAATGGCATTACAGGTGAA+GGG | 0.625351 | 4_1:+30678364 | Msa0543720:CDS |
| TGAAGTGCCGTCAACCAGCA+TGG | 0.625663 | 4_1:+30678255 | Msa0543720:CDS |
| TGGTTCTAGAAATACTCTTG+AGG | 0.626257 | 4_1:+30675041 | Msa0543720:CDS |
| ACAATGGAGTTGAAGTAACT+AGG | 0.628231 | 4_1:+30677924 | Msa0543720:CDS |
| GAAAATGACATAGGCATGTG+AGG | 0.629094 | 4_1:-30678821 | None:intergenic |
| GGCAGCTCATGTTGTCGATG+AGG | 0.635035 | 4_1:+30678276 | Msa0543720:CDS |
| TGTGGATGGTCTTGATGAAG+AGG | 0.636361 | 4_1:+30678558 | Msa0543720:CDS |
| AGAGGCAGCAGCAGCACATG+TGG | 0.636794 | 4_1:+30678576 | Msa0543720:CDS |
| TGAGGCTCAGTTAAACAAAG+AGG | 0.640733 | 4_1:+30676596 | Msa0543720:CDS |
| GGAGAAGTAACGCTGAACAC+TGG | 0.644160 | 4_1:-30670718 | None:intergenic |
| TAACCTGTGAATAATTGCTG+CGG | 0.646818 | 4_1:-30678420 | None:intergenic |
| AACGAGAATGTGGATGTGGA+TGG | 0.650385 | 4_1:+30678544 | Msa0543720:CDS |
| ATCGATTGACAAGAGTTGTG+AGG | 0.651602 | 4_1:+30677892 | Msa0543720:CDS |
| TCACCGGCTCGAGAGGCAAG+AGG | 0.653046 | 4_1:+30673515 | Msa0543720:CDS |
| TTATGCGCTCTTTATCAGAA+CGG | 0.655430 | 4_1:+30670952 | Msa0543720:CDS |
| TGAGGGATAAACTTGACAGA+AGG | 0.656295 | 4_1:+30673471 | Msa0543720:CDS |
| CGGCTCGAGAGGCAAGAGGT+CGG | 0.660465 | 4_1:+30673519 | Msa0543720:CDS |
| AACACTGGTACAGCTACTCG+TGG | 0.662851 | 4_1:-30670703 | None:intergenic |
| GGTGCAGTGACAGAAGACAT+AGG | 0.669837 | 4_1:+30674920 | Msa0543720:intron |
| AGGAGAAAACAGGATATCAG+TGG | 0.680364 | 4_1:+30674940 | Msa0543720:CDS |
| GATTGACAAGAGTTGTGAGG+AGG | 0.689653 | 4_1:+30677895 | Msa0543720:CDS |
| CATAATTTGGAACAGAACAG+CGG | 0.694176 | 4_1:+30677102 | Msa0543720:CDS |
| ACCTGTGAATAATTGCTGCG+GGG | 0.699773 | 4_1:-30678418 | None:intergenic |
| GCTGCGGGGAATCAAATCTG+GGG | 0.713601 | 4_1:-30678404 | None:intergenic |
| TCTGTGGAAGAGTTACAACA+AGG | 0.739554 | 4_1:+30677162 | Msa0543720:CDS |
| TTGCAGAATATAGTCCACTG+AGG | 0.772392 | 4_1:+30673963 | Msa0543720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTTTTTTTTTTTTGA+GGG | + | chr4_1:30673394-30673413 | Msa0543720:intron | 10.0% |
| !!! | TTTTTTTGTAATTTTAGTTA+CGG | + | chr4_1:30674511-30674530 | Msa0543720:intron | 10.0% |
| !! | AAAATGAATAAATAAAAATC+AGG | - | chr4_1:30676728-30676747 | None:intergenic | 10.0% |
| !! | TAAAAAACATAATACATATT+GGG | - | chr4_1:30678862-30678881 | None:intergenic | 10.0% |
| !! | ATAAAAAACATAATACATAT+TGG | - | chr4_1:30678863-30678882 | None:intergenic | 10.0% |
| !! | AAGATTGAATTAGAAAAAAA+GGG | - | chr4_1:30670808-30670827 | None:intergenic | 15.0% |
| !! | TAAGATTGAATTAGAAAAAA+AGG | - | chr4_1:30670809-30670828 | None:intergenic | 15.0% |
| !!! | TTCAATTATTTTTTGGATTT+TGG | + | chr4_1:30671902-30671921 | Msa0543720:intron | 15.0% |
| !! | ATGATATAAGTTTAATCTAT+GGG | + | chr4_1:30672184-30672203 | Msa0543720:intron | 15.0% |
| !! | ATTGAATTCAGATAAATTAA+TGG | - | chr4_1:30672403-30672422 | None:intergenic | 15.0% |
| !! | AATTCATATATGAAATGATT+GGG | - | chr4_1:30672850-30672869 | None:intergenic | 15.0% |
| !!! | GCTTTTTTTTTTTTTTTTTG+AGG | + | chr4_1:30673393-30673412 | Msa0543720:intron | 15.0% |
| !! | TACAAATGATATATAATACA+AGG | - | chr4_1:30674387-30674406 | None:intergenic | 15.0% |
| !!! | TTTTTTGTAATTTTAGTTAC+GGG | + | chr4_1:30674512-30674531 | Msa0543720:intron | 15.0% |
| !!! | AGTTTATATAACATTTTAGA+TGG | - | chr4_1:30675346-30675365 | None:intergenic | 15.0% |
| !! | ATTAAGAATTGTCAAAATAA+TGG | - | chr4_1:30676690-30676709 | None:intergenic | 15.0% |
| !!! | TTTGGTAAATATAGTTATTT+TGG | + | chr4_1:30677191-30677210 | Msa0543720:intron | 15.0% |
| !!! | ATATACCAATAACTTTATTT+GGG | + | chr4_1:30677652-30677671 | Msa0543720:intron | 15.0% |
| !! | GAGTACAACTAATAAAAAAA+GGG | - | chr4_1:30671434-30671453 | None:intergenic | 20.0% |
| !!! | TTTGCACTTCAATTATTTTT+TGG | + | chr4_1:30671895-30671914 | Msa0543720:intron | 20.0% |
| !! | CTTATATCATGAATAGTAAT+AGG | - | chr4_1:30672174-30672193 | None:intergenic | 20.0% |
| !! | CATGATATAAGTTTAATCTA+TGG | + | chr4_1:30672183-30672202 | Msa0543720:intron | 20.0% |
| !! | TGATATAAGTTTAATCTATG+GGG | + | chr4_1:30672185-30672204 | Msa0543720:intron | 20.0% |
| !! | ATGTGAATTAATTAGATTAC+AGG | - | chr4_1:30672349-30672368 | None:intergenic | 20.0% |
| !! | ATTAATATGCTCAATTTCAA+CGG | + | chr4_1:30672546-30672565 | Msa0543720:intron | 20.0% |
| !! | GAATTCATATATGAAATGAT+TGG | - | chr4_1:30672851-30672870 | None:intergenic | 20.0% |
| !!! | ATGATATATGATATTCCTTT+TGG | + | chr4_1:30672930-30672949 | Msa0543720:intron | 20.0% |
| !! | AAATAATATATAACCTCGAA+TGG | - | chr4_1:30673081-30673100 | None:intergenic | 20.0% |
| !! | AAAATGTAAAATTGCTATCA+TGG | - | chr4_1:30673670-30673689 | None:intergenic | 20.0% |
| !! | GCTTAAATATCTCTTAAAAA+TGG | - | chr4_1:30673742-30673761 | None:intergenic | 20.0% |
| !!! | TTTCTTATTTATCATTCATG+AGG | - | chr4_1:30674207-30674226 | None:intergenic | 20.0% |
| !!! | TTTTTGTAATTTTAGTTACG+GGG | + | chr4_1:30674513-30674532 | Msa0543720:intron | 20.0% |
| !! | ATATTTGATGTGCAAATTAA+AGG | - | chr4_1:30674846-30674865 | None:intergenic | 20.0% |
| !!! | ATCATTTTTTCTTCTTTAAC+TGG | - | chr4_1:30675015-30675034 | None:intergenic | 20.0% |
| !!! | CACATGTTTATTTTTATTCT+TGG | + | chr4_1:30675135-30675154 | Msa0543720:intron | 20.0% |
| !! | TTTGTTAGGATATATTGTAA+TGG | + | chr4_1:30675468-30675487 | Msa0543720:intron | 20.0% |
| !! | ATAAGTCTATTTGTATAACT+AGG | + | chr4_1:30675555-30675574 | Msa0543720:intron | 20.0% |
| !! | TAAGTCTATTTGTATAACTA+GGG | + | chr4_1:30675556-30675575 | Msa0543720:intron | 20.0% |
| !!! | AACTTTGAAAAAAATTAACC+CGG | + | chr4_1:30675817-30675836 | Msa0543720:intron | 20.0% |
| !! | TTGTGACTTATTCATATTTA+TGG | - | chr4_1:30675969-30675988 | None:intergenic | 20.0% |
| !! | ATAAATATGAATAAGTCACA+AGG | + | chr4_1:30675968-30675987 | Msa0543720:intron | 20.0% |
| !! | TAAATATGAATAAGTCACAA+GGG | + | chr4_1:30675969-30675988 | Msa0543720:intron | 20.0% |
| !!! | TTAAAAAAAAGGCATGATTA+AGG | - | chr4_1:30676199-30676218 | None:intergenic | 20.0% |
| !!! | TGCCTTTTTTTTAAATAGAT+TGG | + | chr4_1:30676205-30676224 | Msa0543720:intron | 20.0% |
| !! | AGCCAATCTATTTAAAAAAA+AGG | - | chr4_1:30676210-30676229 | None:intergenic | 20.0% |
| !!! | TTAAATCTGATACTGATTTT+GGG | + | chr4_1:30676336-30676355 | Msa0543720:intron | 20.0% |
| !! | TTTCATTAATATTCTCAAGA+CGG | - | chr4_1:30676376-30676395 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCACATTTTTTCA+GGG | - | chr4_1:30676418-30676437 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTCACATTTTTTC+AGG | - | chr4_1:30676419-30676438 | None:intergenic | 20.0% |
| !!! | GTACAAATGTATATTTTTGA+AGG | + | chr4_1:30676515-30676534 | Msa0543720:intron | 20.0% |
| !!! | ACATTCTTTCTTCTATTTTT+TGG | + | chr4_1:30676907-30676926 | Msa0543720:intron | 20.0% |
| !!! | CATTCTTTCTTCTATTTTTT+GGG | + | chr4_1:30676908-30676927 | Msa0543720:intron | 20.0% |
| !! | ATTCACAATATACAAAAAGT+CGG | - | chr4_1:30677339-30677358 | None:intergenic | 20.0% |
| !! | CTAAAATATTTAAAAACCAG+AGG | - | chr4_1:30677415-30677434 | None:intergenic | 20.0% |
| !! | CATATACCAATAACTTTATT+TGG | + | chr4_1:30677651-30677670 | Msa0543720:intron | 20.0% |
| !! | TTATACCCAAATAAAGTTAT+TGG | - | chr4_1:30677660-30677679 | None:intergenic | 20.0% |
| !! | TACTAATTCAATTAATTCCA+TGG | + | chr4_1:30678020-30678039 | Msa0543720:intron | 20.0% |
| !!! | TTTATATGTTGCATTCTTTT+TGG | + | chr4_1:30678084-30678103 | Msa0543720:intron | 20.0% |
| !!! | TTATATGTTGCATTCTTTTT+GGG | + | chr4_1:30678085-30678104 | Msa0543720:intron | 20.0% |
| !! | TATTGAAAACATGAATATGT+TGG | + | chr4_1:30678659-30678678 | Msa0543720:three_prime_UTR | 20.0% |
| ! | TGAAAATTCACCATTATAGT+TGG | - | chr4_1:30671040-30671059 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTTTTGTTGAGAT+AGG | + | chr4_1:30671091-30671110 | Msa0543720:intron | 25.0% |
| ! | GGAGTACAACTAATAAAAAA+AGG | - | chr4_1:30671435-30671454 | None:intergenic | 25.0% |
| !! | TTTTATTAGTTGTACTCCTA+AGG | + | chr4_1:30671437-30671456 | Msa0543720:intron | 25.0% |
| ! | TTTATTAGTTGTACTCCTAA+GGG | + | chr4_1:30671438-30671457 | Msa0543720:intron | 25.0% |
| ! | TTTGCGAGAACTTATAAAAA+GGG | + | chr4_1:30671516-30671535 | Msa0543720:intron | 25.0% |
| !! | TAAATGTTGTTTGTCCAAAA+TGG | + | chr4_1:30671645-30671664 | Msa0543720:intron | 25.0% |
| !! | AAATGTTGTTTGTCCAAAAT+GGG | + | chr4_1:30671646-30671665 | Msa0543720:intron | 25.0% |
| !!! | AACTAATCACTATTGTTTTG+CGG | + | chr4_1:30671737-30671756 | Msa0543720:intron | 25.0% |
| !! | TACAAAGTGTTATCAAATAG+CGG | + | chr4_1:30671772-30671791 | Msa0543720:intron | 25.0% |
| !! | ATTGTACCTGTTTTATATCT+CGG | + | chr4_1:30671942-30671961 | Msa0543720:intron | 25.0% |
| !! | GAAAAGAAATATAGTTTGTC+AGG | - | chr4_1:30671976-30671995 | None:intergenic | 25.0% |
| !! | GACAAACTATATTTCTTTTC+TGG | + | chr4_1:30671976-30671995 | Msa0543720:intron | 25.0% |
| !!! | ATAACATACTTAACTTGCAT+GGG | + | chr4_1:30672234-30672253 | Msa0543720:intron | 25.0% |
| ! | TGAGGAAATAAATTATGTAG+TGG | + | chr4_1:30672304-30672323 | Msa0543720:intron | 25.0% |
| ! | ATTCAATACTCTTAAAACAG+AGG | + | chr4_1:30672416-30672435 | Msa0543720:intron | 25.0% |
| ! | TGGATGCTTATCTAATAATA+TGG | + | chr4_1:30672442-30672461 | Msa0543720:intron | 25.0% |
| ! | TGTTTAACATAGTACTTTCT+TGG | + | chr4_1:30672694-30672713 | Msa0543720:intron | 25.0% |
| ! | ACACTTGTTCTGTATATTTA+TGG | - | chr4_1:30672741-30672760 | None:intergenic | 25.0% |
| ! | TCTTTATTACTTAAGCATCT+TGG | + | chr4_1:30673045-30673064 | Msa0543720:intron | 25.0% |
| !!! | ATATCTTTGAAGTGTAATCA+AGG | - | chr4_1:30673156-30673175 | None:intergenic | 25.0% |
| ! | AAAGATATAAGCTACATACA+TGG | + | chr4_1:30673168-30673187 | Msa0543720:intron | 25.0% |
| ! | AAGATATAAGCTACATACAT+GGG | + | chr4_1:30673169-30673188 | Msa0543720:intron | 25.0% |
| ! | ACTATATCTGTCATAATTTG+AGG | + | chr4_1:30673196-30673215 | Msa0543720:intron | 25.0% |
| ! | CTATATCTGTCATAATTTGA+GGG | + | chr4_1:30673197-30673216 | Msa0543720:intron | 25.0% |
| ! | TCTCTTATTATTCCTGATAT+TGG | + | chr4_1:30673283-30673302 | Msa0543720:intron | 25.0% |
| !!! | AAAGCTTATTTTCTTATTGC+AGG | + | chr4_1:30673419-30673438 | Msa0543720:intron | 25.0% |
| ! | ATTTAGGTAATAATGACTTG+AGG | + | chr4_1:30673453-30673472 | Msa0543720:CDS | 25.0% |
| ! | TTTAGGTAATAATGACTTGA+GGG | + | chr4_1:30673454-30673473 | Msa0543720:CDS | 25.0% |
| !!! | TTTTTAGTTTAGTCATACCA+TGG | + | chr4_1:30673606-30673625 | Msa0543720:intron | 25.0% |
| !! | CATTTTATATTTTGTGAGAC+TGG | + | chr4_1:30673684-30673703 | Msa0543720:intron | 25.0% |
| ! | ATTTCTATTCATGGAACATT+AGG | - | chr4_1:30673944-30673963 | None:intergenic | 25.0% |
| ! | TATTCTGCAATTTCTATTCA+TGG | - | chr4_1:30673953-30673972 | None:intergenic | 25.0% |
| !! | TTAATTTACCTTCTTTTCTC+TGG | - | chr4_1:30673992-30674011 | None:intergenic | 25.0% |
| ! | GATATATAATACAAGGACAT+CGG | - | chr4_1:30674380-30674399 | None:intergenic | 25.0% |
| ! | ATGGAATTCTATTCTATGTT+TGG | + | chr4_1:30674641-30674660 | Msa0543720:intron | 25.0% |
| ! | CATGATTTGATATAAGAATG+TGG | + | chr4_1:30674686-30674705 | Msa0543720:intron | 25.0% |
| !!! | GGTTATTTTGATTCAACTAA+AGG | + | chr4_1:30674707-30674726 | Msa0543720:intron | 25.0% |
| !!! | TGGTTCTATTTTGTACTATT+TGG | - | chr4_1:30674740-30674759 | None:intergenic | 25.0% |
| ! | TGGAATGGAATGAAATTAAA+TGG | - | chr4_1:30674760-30674779 | None:intergenic | 25.0% |
| ! | TTTATACTAAATCATAGACG+AGG | - | chr4_1:30674886-30674905 | None:intergenic | 25.0% |
| ! | GAAAAAACAAGAGAATGTAT+TGG | - | chr4_1:30675108-30675127 | None:intergenic | 25.0% |
| ! | AATGACACAAGAAAACAATA+TGG | - | chr4_1:30675305-30675324 | None:intergenic | 25.0% |
| !!! | TATTGTTTTCTTGTGTCATT+TGG | + | chr4_1:30675305-30675324 | Msa0543720:intron | 25.0% |
| !! | GCTTTCTTTTGATATTTGTT+AGG | + | chr4_1:30675454-30675473 | Msa0543720:intron | 25.0% |
| ! | ACTACTTTAACTACACTAAT+TGG | - | chr4_1:30675494-30675513 | None:intergenic | 25.0% |
| ! | AAGTCTATTTGTATAACTAG+GGG | + | chr4_1:30675557-30675576 | Msa0543720:intron | 25.0% |
| !! | TTTCTAAAGAATCCAATTCT+TGG | + | chr4_1:30675710-30675729 | Msa0543720:intron | 25.0% |
| !! | TTCTAAAGAATCCAATTCTT+GGG | + | chr4_1:30675711-30675730 | Msa0543720:intron | 25.0% |
| ! | TAAACTATTCGATATAAACC+TGG | - | chr4_1:30675798-30675817 | None:intergenic | 25.0% |
| ! | TGACTTATTCATATTTATGG+TGG | - | chr4_1:30675966-30675985 | None:intergenic | 25.0% |
| !! | TTTTCTAAGTCTAACACTAT+GGG | - | chr4_1:30676034-30676053 | None:intergenic | 25.0% |
| !! | ATTTTCTAAGTCTAACACTA+TGG | - | chr4_1:30676035-30676054 | None:intergenic | 25.0% |
| ! | GTTACTATTTCCTATCTATT+AGG | - | chr4_1:30676089-30676108 | None:intergenic | 25.0% |
| !!! | CTTAAATCTGATACTGATTT+TGG | + | chr4_1:30676335-30676354 | Msa0543720:intron | 25.0% |
| ! | TATTTCAACTGAAAAAACGA+AGG | - | chr4_1:30676443-30676462 | None:intergenic | 25.0% |
| ! | TGAAATATTTATCCGCTTTA+AGG | + | chr4_1:30676456-30676475 | Msa0543720:intron | 25.0% |
| ! | AATTTAATCCAACCTTAAAG+CGG | - | chr4_1:30676471-30676490 | None:intergenic | 25.0% |
| !!! | CCTTATTTTTGAAGTAATTC+TGG | - | chr4_1:30676768-30676787 | None:intergenic | 25.0% |
| ! | CCAGAATTACTTCAAAAATA+AGG | + | chr4_1:30676765-30676784 | Msa0543720:intron | 25.0% |
| ! | TGAAAAAGAACTACAGTATA+TGG | + | chr4_1:30677499-30677518 | Msa0543720:intron | 25.0% |
| ! | AAATTGTGAATATGTGTCTT+TGG | - | chr4_1:30677551-30677570 | None:intergenic | 25.0% |
| !! | CACTACATAAGATTTTCAAA+TGG | + | chr4_1:30678162-30678181 | Msa0543720:intron | 25.0% |
| !!! | TGATTTCTAGCTTTTTGTTT+TGG | + | chr4_1:30678620-30678639 | Msa0543720:three_prime_UTR | 25.0% |
| GAAAAGTTGAAGAAGAATGA+AGG | - | chr4_1:30670758-30670777 | None:intergenic | 30.0% | |
| ! | CATTCTTCTTCAACTTTTCA+AGG | + | chr4_1:30670759-30670778 | Msa0543720:five_prime_UTR | 30.0% |
| TTAGAAAAAAAGGGTTCGAT+GGG | - | chr4_1:30670799-30670818 | None:intergenic | 30.0% | |
| ATTAGAAAAAAAGGGTTCGA+TGG | - | chr4_1:30670800-30670819 | None:intergenic | 30.0% | |
| TCAACTTTGAACAATTCGAT+CGG | - | chr4_1:30670897-30670916 | None:intergenic | 30.0% | |
| ! | TAAACTGTTCTTTTGCACAT+GGG | + | chr4_1:30670989-30671008 | Msa0543720:CDS | 30.0% |
| ! | CGATTTTCTTCCAACTATAA+TGG | + | chr4_1:30671027-30671046 | Msa0543720:CDS | 30.0% |
| !!! | GTTTTTTGTTGAGATAGGTT+TGG | + | chr4_1:30671096-30671115 | Msa0543720:intron | 30.0% |
| ! | AGATAGGTTTGGATTTGTTT+GGG | + | chr4_1:30671107-30671126 | Msa0543720:intron | 30.0% |
| ATTGTTAGTTGAGGGATATT+TGG | + | chr4_1:30671197-30671216 | Msa0543720:intron | 30.0% | |
| ! | TATTTGGTGGATGTAAATTG+TGG | + | chr4_1:30671213-30671232 | Msa0543720:intron | 30.0% |
| AATTATTACTTGTACCCCTA+AGG | + | chr4_1:30671237-30671256 | Msa0543720:intron | 30.0% | |
| ATTATTACTTGTACCCCTAA+GGG | + | chr4_1:30671238-30671257 | Msa0543720:intron | 30.0% | |
| ! | GACTATTTGAGTTTATCTAC+TGG | + | chr4_1:30671473-30671492 | Msa0543720:intron | 30.0% |
| CTTTGCGAGAACTTATAAAA+AGG | + | chr4_1:30671515-30671534 | Msa0543720:intron | 30.0% | |
| GTAATCGAAGTTCGATATTT+AGG | - | chr4_1:30671672-30671691 | None:intergenic | 30.0% | |
| TGTTTGTAAGTTCTTCATTC+AGG | - | chr4_1:30672025-30672044 | None:intergenic | 30.0% | |
| !! | GATAACATACTTAACTTGCA+TGG | + | chr4_1:30672233-30672252 | Msa0543720:intron | 30.0% |
| !! | TAACATACTTAACTTGCATG+GGG | + | chr4_1:30672235-30672254 | Msa0543720:intron | 30.0% |
| CATTGCATGAAGAAAATTTG+AGG | + | chr4_1:30672286-30672305 | Msa0543720:intron | 30.0% | |
| CATACATATGCAATAACACA+TGG | + | chr4_1:30672504-30672523 | Msa0543720:intron | 30.0% | |
| TGGATCTTATGATATTCCTT+TGG | + | chr4_1:30672884-30672903 | Msa0543720:intron | 30.0% | |
| GGATCTTATGATATTCCTTT+GGG | + | chr4_1:30672885-30672904 | Msa0543720:intron | 30.0% | |
| ATATCAAATCTCATAGCCTT+CGG | + | chr4_1:30673017-30673036 | Msa0543720:intron | 30.0% | |
| AGTTCAAAGTCACTTGAAAA+AGG | + | chr4_1:30673636-30673655 | Msa0543720:intron | 30.0% | |
| GAACATTAGGAAAGAGAAAA+GGG | - | chr4_1:30673931-30673950 | None:intergenic | 30.0% | |
| ACAAAAGTAGTAGACAACAT+TGG | - | chr4_1:30674061-30674080 | None:intergenic | 30.0% | |
| AGTATATACTTGTCACATCT+GGG | - | chr4_1:30674261-30674280 | None:intergenic | 30.0% | |
| AAGTATATACTTGTCACATC+TGG | - | chr4_1:30674262-30674281 | None:intergenic | 30.0% | |
| CATTTGTAATTGTTAGTCGA+TGG | + | chr4_1:30674399-30674418 | Msa0543720:intron | 30.0% | |
| ! | TTCATGAAACTTATTTGCTG+TGG | + | chr4_1:30674464-30674483 | Msa0543720:intron | 30.0% |
| !! | TCATGAAACTTATTTGCTGT+GGG | + | chr4_1:30674465-30674484 | Msa0543720:intron | 30.0% |
| ATTCTTACTCTCAATACACT+TGG | + | chr4_1:30674581-30674600 | Msa0543720:intron | 30.0% | |
| TTGATGTGCAAATTAAAGGT+TGG | - | chr4_1:30674842-30674861 | None:intergenic | 30.0% | |
| AACTTCCAGAAATATCACTT+TGG | - | chr4_1:30674966-30674985 | None:intergenic | 30.0% | |
| GAAGAAAAAATGATTTCCTC+TGG | + | chr4_1:30675021-30675040 | Msa0543720:CDS | 30.0% | |
| ACAATATGGTCAATTCTGTT+TGG | - | chr4_1:30675291-30675310 | None:intergenic | 30.0% | |
| ATAGAAGTCAGTTAGTTAGT+TGG | + | chr4_1:30675525-30675544 | Msa0543720:intron | 30.0% | |
| TAGAAGTCAGTTAGTTAGTT+GGG | + | chr4_1:30675526-30675545 | Msa0543720:intron | 30.0% | |
| AGTAGTAACTCTATTGTGAA+GGG | + | chr4_1:30675628-30675647 | Msa0543720:intron | 30.0% | |
| AACCTTTGTCTAGTAATTTG+TGG | - | chr4_1:30675857-30675876 | None:intergenic | 30.0% | |
| !!! | GTTTCACTCGTTTTTTGTTA+GGG | - | chr4_1:30675901-30675920 | None:intergenic | 30.0% |
| !!! | TGTTTCACTCGTTTTTTGTT+AGG | - | chr4_1:30675902-30675921 | None:intergenic | 30.0% |
| TAACAAAAAACGAGTGAAAC+AGG | + | chr4_1:30675901-30675920 | Msa0543720:intron | 30.0% | |
| !! | TCTGGTTTGATCTCTAATTT+TGG | - | chr4_1:30675930-30675949 | None:intergenic | 30.0% |
| ACTATGAAAGCCTAATAGAT+AGG | + | chr4_1:30676076-30676095 | Msa0543720:intron | 30.0% | |
| AGGAAATAGTAACAGTGTAA+CGG | + | chr4_1:30676096-30676115 | Msa0543720:intron | 30.0% | |
| AGGGCAAAATCATCTTATAA+GGG | + | chr4_1:30676278-30676297 | Msa0543720:intron | 30.0% | |
| !!! | GATTTCAAGTCTTTGTTTTG+AGG | + | chr4_1:30676312-30676331 | Msa0543720:intron | 30.0% |
| !!! | TTCACATTTTTTCAGGGAAA+TGG | - | chr4_1:30676412-30676431 | None:intergenic | 30.0% |
| !! | ATATTTATCCGCTTTAAGGT+TGG | + | chr4_1:30676460-30676479 | Msa0543720:intron | 30.0% |
| !! | TAGCCTTAATTCTAGAATTC+AGG | + | chr4_1:30676569-30676588 | Msa0543720:CDS | 30.0% |
| !! | GTTCCTGAATTCTAGAATTA+AGG | - | chr4_1:30676575-30676594 | None:intergenic | 30.0% |
| !! | TTGTTTTGTATGTAGATCAC+AGG | + | chr4_1:30676954-30676973 | Msa0543720:intron | 30.0% |
| !! | TTCTCAGACATTTCTAGAAT+TGG | + | chr4_1:30677006-30677025 | Msa0543720:CDS | 30.0% |
| ! | AAATTATGTTTGGTGATTGG+AGG | - | chr4_1:30677090-30677109 | None:intergenic | 30.0% |
| TCCAATCACCAAACATAATT+TGG | + | chr4_1:30677089-30677108 | Msa0543720:CDS | 30.0% | |
| ! | TCCAAATTATGTTTGGTGAT+TGG | - | chr4_1:30677093-30677112 | None:intergenic | 30.0% |
| GTTCTGTTCCAAATTATGTT+TGG | - | chr4_1:30677100-30677119 | None:intergenic | 30.0% | |
| AAAATGTCTTTCATCTGTGT+GGG | + | chr4_1:30677269-30677288 | Msa0543720:intron | 30.0% | |
| TAATGTAGATTTGTCTGTTG+AGG | + | chr4_1:30677358-30677377 | Msa0543720:intron | 30.0% | |
| AATGTAGATTTGTCTGTTGA+GGG | + | chr4_1:30677359-30677378 | Msa0543720:intron | 30.0% | |
| ! | CTTATGTTTTGTAACCTGTA+TGG | + | chr4_1:30677382-30677401 | Msa0543720:intron | 30.0% |
| ! | TTTTGTAACCTGTATGGTTT+TGG | + | chr4_1:30677388-30677407 | Msa0543720:intron | 30.0% |
| AATTCAATTACCAGACAAAC+TGG | - | chr4_1:30677602-30677621 | None:intergenic | 30.0% | |
| GTTTGTCTGGTAATTGAATT+TGG | + | chr4_1:30677602-30677621 | Msa0543720:intron | 30.0% | |
| GAAAACACAAGAAAGGAATA+TGG | + | chr4_1:30677963-30677982 | Msa0543720:CDS | 30.0% | |
| ATGACTGTAACAAAAGAAAC+CGG | - | chr4_1:30678114-30678133 | None:intergenic | 30.0% | |
| !! | AATGTCATTGATAATGACCA+CGG | - | chr4_1:30678191-30678210 | None:intergenic | 30.0% |
| TGTATGTTCATGGTTATGAA+TGG | - | chr4_1:30678217-30678236 | None:intergenic | 30.0% | |
| GTTGATATTGAGCATGATAA+CGG | + | chr4_1:30678301-30678320 | Msa0543720:CDS | 30.0% | |
| CTGATACTAATGAAACTTCA+AGG | + | chr4_1:30678326-30678345 | Msa0543720:CDS | 30.0% | |
| TCAAGGACAGAAAATGATAA+TGG | + | chr4_1:30678343-30678362 | Msa0543720:CDS | 30.0% | |
| !! | GACAGAAAATGATAATGGAA+TGG | + | chr4_1:30678348-30678367 | Msa0543720:CDS | 30.0% |
| TTAACTTAATGTGCAGTATG+AGG | + | chr4_1:30678516-30678535 | Msa0543720:intron | 30.0% | |
| TAACTTAATGTGCAGTATGA+GGG | + | chr4_1:30678517-30678536 | Msa0543720:intron | 30.0% | |
| !!! | TTTCTAGCTTTTTGTTTTGG+TGG | + | chr4_1:30678623-30678642 | Msa0543720:three_prime_UTR | 30.0% |
| ! | TTGGAGAAAGCTTTTCTATT+AGG | + | chr4_1:30678678-30678697 | Msa0543720:three_prime_UTR | 30.0% |
| ! | GAAAGCTTTTCTATTAGGAT+AGG | + | chr4_1:30678683-30678702 | Msa0543720:three_prime_UTR | 30.0% |
| TTATGCGCTCTTTATCAGAA+CGG | + | chr4_1:30670952-30670971 | Msa0543720:CDS | 35.0% | |
| ! | CTAAACTGTTCTTTTGCACA+TGG | + | chr4_1:30670988-30671007 | Msa0543720:CDS | 35.0% |
| ! | GAGATAGGTTTGGATTTGTT+TGG | + | chr4_1:30671106-30671125 | Msa0543720:intron | 35.0% |
| AAGTTTACCCCAACATTGTA+GGG | - | chr4_1:30671168-30671187 | None:intergenic | 35.0% | |
| TAAGTTTACCCCAACATTGT+AGG | - | chr4_1:30671169-30671188 | None:intergenic | 35.0% | |
| AGTGGTTTGATTGTTAGTTG+AGG | + | chr4_1:30671188-30671207 | Msa0543720:intron | 35.0% | |
| GTGGTTTGATTGTTAGTTGA+GGG | + | chr4_1:30671189-30671208 | Msa0543720:intron | 35.0% | |
| TTATTACTTGTACCCCTAAG+GGG | + | chr4_1:30671239-30671258 | Msa0543720:intron | 35.0% | |
| CTCAAATAGTCAATCCAAAC+AGG | - | chr4_1:30671464-30671483 | None:intergenic | 35.0% | |
| ATGCTTATGCTATAAGTTGC+AGG | + | chr4_1:30671621-30671640 | Msa0543720:intron | 35.0% | |
| ! | TTCGATATTTAGGCCCATTT+TGG | - | chr4_1:30671662-30671681 | None:intergenic | 35.0% |
| AAATAAGTAGCATAGCGTAG+TGG | + | chr4_1:30671708-30671727 | Msa0543720:intron | 35.0% | |
| TTATCAAATAGCGGCTATTG+TGG | + | chr4_1:30671781-30671800 | Msa0543720:intron | 35.0% | |
| CAAGAACCGAGATATAAAAC+AGG | - | chr4_1:30671951-30671970 | None:intergenic | 35.0% | |
| ! | GTGGACTACAAAATAGTTCA+AGG | - | chr4_1:30672102-30672121 | None:intergenic | 35.0% |
| ATGTAGTGGTGACACTTTAT+CGG | + | chr4_1:30672318-30672337 | Msa0543720:intron | 35.0% | |
| TACTCTTAAAACAGAGGATC+TGG | + | chr4_1:30672422-30672441 | Msa0543720:intron | 35.0% | |
| ATCTCCTTTCACAGAATCAA+TGG | - | chr4_1:30672477-30672496 | None:intergenic | 35.0% | |
| ATATGCTCAATTTCAACGGT+AGG | + | chr4_1:30672550-30672569 | Msa0543720:intron | 35.0% | |
| !! | TGCTGATTGGTTTATCTTAG+AGG | + | chr4_1:30672659-30672678 | Msa0543720:intron | 35.0% |
| TTTCCTGAAGGATCTTAATC+AGG | + | chr4_1:30672760-30672779 | Msa0543720:intron | 35.0% | |
| TGAATTCCACTACTTAAGAG+TGG | + | chr4_1:30672864-30672883 | Msa0543720:intron | 35.0% | |
| TAAGATCCACTCTTAAGTAG+TGG | - | chr4_1:30672873-30672892 | None:intergenic | 35.0% | |
| AGTAATAAAGATCCATCCGA+AGG | - | chr4_1:30673036-30673055 | None:intergenic | 35.0% | |
| AAGTGTAATCAAGGTAGCAA+TGG | - | chr4_1:30673147-30673166 | None:intergenic | 35.0% | |
| !!! | ATCTACTTTTTGCTCTTACG+TGG | + | chr4_1:30673231-30673250 | Msa0543720:intron | 35.0% |
| !!! | TCTACTTTTTGCTCTTACGT+GGG | + | chr4_1:30673232-30673251 | Msa0543720:intron | 35.0% |
| ATTCCTGATATTGGTAAGCT+TGG | + | chr4_1:30673292-30673311 | Msa0543720:intron | 35.0% | |
| ATACCAAGCTTACCAATATC+AGG | - | chr4_1:30673298-30673317 | None:intergenic | 35.0% | |
| AACGAGAACAAGCAGAAATA+AGG | - | chr4_1:30673572-30673591 | None:intergenic | 35.0% | |
| ACGACAAGTTAGGGTTAAAT+AGG | - | chr4_1:30673786-30673805 | None:intergenic | 35.0% | |
| ! | TATTTAACCCTAACTTGTCG+TGG | + | chr4_1:30673785-30673804 | Msa0543720:intron | 35.0% |
| TATAACTTCAGAAGGAAGCA+AGG | - | chr4_1:30673835-30673854 | None:intergenic | 35.0% | |
| ATGTCAGCTATAACTTCAGA+AGG | - | chr4_1:30673843-30673862 | None:intergenic | 35.0% | |
| GGAACATTAGGAAAGAGAAA+AGG | - | chr4_1:30673932-30673951 | None:intergenic | 35.0% | |
| ACATTGGCAACAGAAATGAA+AGG | - | chr4_1:30674045-30674064 | None:intergenic | 35.0% | |
| TGAGAGAGACAAACTTTGAA+AGG | + | chr4_1:30674128-30674147 | Msa0543720:intron | 35.0% | |
| ! | GAGAGAGACAAACTTTGAAA+GGG | + | chr4_1:30674129-30674148 | Msa0543720:intron | 35.0% |
| ! | AGAGAGACAAACTTTGAAAG+GGG | + | chr4_1:30674130-30674149 | Msa0543720:intron | 35.0% |
| ! | TAACACGAGGCATTAATTCA+TGG | - | chr4_1:30674290-30674309 | None:intergenic | 35.0% |
| CAATTGAACGTAATAACACG+AGG | - | chr4_1:30674303-30674322 | None:intergenic | 35.0% | |
| GTCGATGGTATTATGTTCAT+TGG | + | chr4_1:30674414-30674433 | Msa0543720:intron | 35.0% | |
| AGATGAGACATGTCAAAACA+TGG | + | chr4_1:30674622-30674641 | Msa0543720:intron | 35.0% | |
| ! | CAGCAAGGATTATAATGGAA+TGG | - | chr4_1:30674775-30674794 | None:intergenic | 35.0% |
| ATGAATGTAATATCTCCGTC+AGG | + | chr4_1:30674815-30674834 | Msa0543720:intron | 35.0% | |
| TGAATGTAATATCTCCGTCA+GGG | + | chr4_1:30674816-30674835 | Msa0543720:intron | 35.0% | |
| GTATAAACATTAGCAACTCC+TGG | + | chr4_1:30674899-30674918 | Msa0543720:intron | 35.0% | |
| !! | AAGAGTATTTCTAGAACCAG+AGG | - | chr4_1:30675040-30675059 | None:intergenic | 35.0% |
| !! | TGGTTCTAGAAATACTCTTG+AGG | + | chr4_1:30675041-30675060 | Msa0543720:CDS | 35.0% |
| TAGAAATACTCTTGAGGATC+AGG | + | chr4_1:30675047-30675066 | Msa0543720:CDS | 35.0% | |
| ! | TAACCGATAGTTGGGATTTT+CGG | - | chr4_1:30675211-30675230 | None:intergenic | 35.0% |
| GACAAAACTAACCGATAGTT+GGG | - | chr4_1:30675219-30675238 | None:intergenic | 35.0% | |
| AGACAAAACTAACCGATAGT+TGG | - | chr4_1:30675220-30675239 | None:intergenic | 35.0% | |
| AGAAGTCAGTTAGTTAGTTG+GGG | + | chr4_1:30675527-30675546 | Msa0543720:intron | 35.0% | |
| GAGTAGTAACTCTATTGTGA+AGG | + | chr4_1:30675627-30675646 | Msa0543720:intron | 35.0% | |
| GTAGTAACTCTATTGTGAAG+GGG | + | chr4_1:30675629-30675648 | Msa0543720:intron | 35.0% | |
| ATTGTTAGGAACCCAAGAAT+TGG | - | chr4_1:30675725-30675744 | None:intergenic | 35.0% | |
| ATTCTTGGGTTCCTAACAAT+TGG | + | chr4_1:30675725-30675744 | Msa0543720:intron | 35.0% | |
| ! | AATTGGTCCGACCTTTAAAA+TGG | + | chr4_1:30675742-30675761 | Msa0543720:intron | 35.0% |
| !! | ATTGGTCCGACCTTTAAAAT+GGG | + | chr4_1:30675743-30675762 | Msa0543720:intron | 35.0% |
| ! | AGTAATTTGTGGAGCCTTTA+TGG | - | chr4_1:30675846-30675865 | None:intergenic | 35.0% |
| CTCCACAAATTACTAGACAA+AGG | + | chr4_1:30675852-30675871 | Msa0543720:intron | 35.0% | |
| !!! | CTCGTTTTTTGTTAGGGTTT+TGG | - | chr4_1:30675895-30675914 | None:intergenic | 35.0% |
| AAATCAAGTCATTCTGCCTA+AGG | + | chr4_1:30676051-30676070 | Msa0543720:intron | 35.0% | |
| ! | CAATTTTTCCTCTCTGAACA+AGG | - | chr4_1:30676257-30676276 | None:intergenic | 35.0% |
| CTTGTTCAGAGAGGAAAAAT+TGG | + | chr4_1:30676255-30676274 | Msa0543720:intron | 35.0% | |
| TTCAGAGAGGAAAAATTGGA+GGG | + | chr4_1:30676259-30676278 | Msa0543720:intron | 35.0% | |
| GAGGGCAAAATCATCTTATA+AGG | + | chr4_1:30676277-30676296 | Msa0543720:intron | 35.0% | |
| !! | TATATTTTTGAAGGTCTGCC+TGG | + | chr4_1:30676524-30676543 | Msa0543720:intron | 35.0% |
| !! | TTCTAGAATTCAGGAACTTG+AGG | + | chr4_1:30676578-30676597 | Msa0543720:CDS | 35.0% |
| CTCAGTTAAACAAAGAGGAT+GGG | + | chr4_1:30676601-30676620 | Msa0543720:CDS | 35.0% | |
| TCAGTTAAACAAAGAGGATG+GGG | + | chr4_1:30676602-30676621 | Msa0543720:CDS | 35.0% | |
| TCGAATGCACAATCAGAAAT+TGG | + | chr4_1:30676796-30676815 | Msa0543720:intron | 35.0% | |
| !! | AGCGTTGATATTGTAAGCAA+TGG | + | chr4_1:30677048-30677067 | Msa0543720:CDS | 35.0% |
| ! | CATAATTTGGAACAGAACAG+CGG | + | chr4_1:30677102-30677121 | Msa0543720:CDS | 35.0% |
| GTTACAACAAGGTAGTAGTT+TGG | + | chr4_1:30677173-30677192 | Msa0543720:intron | 35.0% | |
| ACCTTAGCTAAGCAAAACAT+TGG | + | chr4_1:30677232-30677251 | Msa0543720:intron | 35.0% | |
| CCTTAGCTAAGCAAAACATT+GGG | + | chr4_1:30677233-30677252 | Msa0543720:intron | 35.0% | |
| GAAAATGTCTTTCATCTGTG+TGG | + | chr4_1:30677268-30677287 | Msa0543720:intron | 35.0% | |
| AAATGTCTTTCATCTGTGTG+GGG | + | chr4_1:30677270-30677289 | Msa0543720:intron | 35.0% | |
| TGAAATGAAACGAGAATACG+AGG | - | chr4_1:30677476-30677495 | None:intergenic | 35.0% | |
| !! | TCGTTTTAAACCAGTTTGTC+TGG | + | chr4_1:30677589-30677608 | Msa0543720:intron | 35.0% |
| ! | TTTTCCTTTAATCTTGCCAC+TGG | + | chr4_1:30677749-30677768 | Msa0543720:intron | 35.0% |
| TTTCCTTTAATCTTGCCACT+GGG | + | chr4_1:30677750-30677769 | Msa0543720:intron | 35.0% | |
| TTACTTCAACTCCATTGTCA+GGG | - | chr4_1:30677922-30677941 | None:intergenic | 35.0% | |
| ACAATGGAGTTGAAGTAACT+AGG | + | chr4_1:30677924-30677943 | Msa0543720:CDS | 35.0% | |
| ! | TGTGTTTTCCTTCAAGATCT+TGG | - | chr4_1:30677952-30677971 | None:intergenic | 35.0% |
| CTTGAAGGAAAACACAAGAA+AGG | + | chr4_1:30677956-30677975 | Msa0543720:CDS | 35.0% | |
| CAACAACATTCAGTCAGAAA+AGG | + | chr4_1:30677997-30678016 | Msa0543720:CDS | 35.0% | |
| ! | AGATTTTCAAATGGTTACCG+TGG | + | chr4_1:30678171-30678190 | Msa0543720:intron | 35.0% |
| !! | TGATAATGGAATGGCATTAC+AGG | + | chr4_1:30678357-30678376 | Msa0543720:CDS | 35.0% |
| TAACCTGTGAATAATTGCTG+CGG | - | chr4_1:30678423-30678442 | None:intergenic | 35.0% | |
| ! | CTACAAGTGTCTAGCTTATA+AGG | - | chr4_1:30678476-30678495 | None:intergenic | 35.0% |
| TAAAAACGAGAATGTGGATG+TGG | + | chr4_1:30678540-30678559 | Msa0543720:CDS | 35.0% | |
| !!! | ACATGCCTATGTCATTTTCT+GGG | + | chr4_1:30678825-30678844 | Msa0543720:three_prime_UTR | 35.0% |
| ATGAAGGAGTGAAGAAAGAG+TGG | - | chr4_1:30670742-30670761 | None:intergenic | 40.0% | |
| GTTTGGGTGAGTGAATTAGT+CGG | + | chr4_1:30671123-30671142 | Msa0543720:intron | 40.0% | |
| CAATGTTGGGGTAAACTTAG+TGG | + | chr4_1:30671170-30671189 | Msa0543720:intron | 40.0% | |
| GTTAGTTGAGGGATATTTGG+TGG | + | chr4_1:30671200-30671219 | Msa0543720:intron | 40.0% | |
| TATTACTTGTACCCCTAAGG+GGG | + | chr4_1:30671240-30671259 | Msa0543720:intron | 40.0% | |
| AGCCTCTTGTGTAAAAACCA+GGG | + | chr4_1:30671329-30671348 | Msa0543720:intron | 40.0% | |
| !! | TACCCTGGTTTTTACACAAG+AGG | - | chr4_1:30671334-30671353 | None:intergenic | 40.0% |
| CTAATAAAAAAAGGGCCTCC+AGG | - | chr4_1:30671426-30671445 | None:intergenic | 40.0% | |
| GTCATAATGTAAGTCCGTTG+TGG | - | chr4_1:30671858-30671877 | None:intergenic | 40.0% | |
| GTACAAACACAGACAAACAC+AGG | - | chr4_1:30672129-30672148 | None:intergenic | 40.0% | |
| ! | ACTTTGACTTCTACACAAGC+TGG | + | chr4_1:30672147-30672166 | Msa0543720:intron | 40.0% |
| TCACAGAATCAATGGACGTA+TGG | - | chr4_1:30672469-30672488 | None:intergenic | 40.0% | |
| !! | ACGTCCATTGATTCTGTGAA+AGG | + | chr4_1:30672470-30672489 | Msa0543720:intron | 40.0% |
| ATGCAATAACACATGGCATG+TGG | + | chr4_1:30672511-30672530 | Msa0543720:intron | 40.0% | |
| TGCAATAACACATGGCATGT+GGG | + | chr4_1:30672512-30672531 | Msa0543720:intron | 40.0% | |
| CAACAGTCTGCAAGATAAAG+TGG | - | chr4_1:30672584-30672603 | None:intergenic | 40.0% | |
| TCGCAATGAATTCTGCTGAT+TGG | + | chr4_1:30672646-30672665 | Msa0543720:intron | 40.0% | |
| GTTTATCTTAGAGGCAATGC+TGG | + | chr4_1:30672668-30672687 | Msa0543720:intron | 40.0% | |
| ACAGAACAAGTGTTTCCTGA+AGG | + | chr4_1:30672748-30672767 | Msa0543720:intron | 40.0% | |
| AAGCCTGATTAAGATCCTTC+AGG | - | chr4_1:30672766-30672785 | None:intergenic | 40.0% | |
| GGATCTTAATCAGGCTTACA+TGG | + | chr4_1:30672769-30672788 | Msa0543720:intron | 40.0% | |
| AAAACGAAGTAACAGCCCAA+AGG | - | chr4_1:30672903-30672922 | None:intergenic | 40.0% | |
| !! | TTTGGGCTGTTACTTCGTTT+TGG | + | chr4_1:30672902-30672921 | Msa0543720:intron | 40.0% |
| !! | TCCTTTTGGCTGTTACTTCA+TGG | + | chr4_1:30672944-30672963 | Msa0543720:intron | 40.0% |
| CTACATGGACATAGGCAAAA+TGG | + | chr4_1:30672967-30672986 | Msa0543720:intron | 40.0% | |
| TGGATATGACTTTCCATTCG+AGG | + | chr4_1:30673065-30673084 | Msa0543720:intron | 40.0% | |
| GCAGGAAAGAGAGACTATTT+AGG | + | chr4_1:30673437-30673456 | Msa0543720:intron | 40.0% | |
| TGAGGGATAAACTTGACAGA+AGG | + | chr4_1:30673471-30673490 | Msa0543720:CDS | 40.0% | |
| ATCACCTCCAAGATATTCAC+CGG | + | chr4_1:30673499-30673518 | Msa0543720:CDS | 40.0% | |
| AGTTTAGTCATACCATGGAG+AGG | + | chr4_1:30673611-30673630 | Msa0543720:intron | 40.0% | |
| ACTTTGAACTTTCCTCTCCA+TGG | - | chr4_1:30673626-30673645 | None:intergenic | 40.0% | |
| TTGCAGAATATAGTCCACTG+AGG | + | chr4_1:30673963-30673982 | Msa0543720:CDS | 40.0% | |
| ! | GAGAGACAAACTTTGAAAGG+GGG | + | chr4_1:30674131-30674150 | Msa0543720:intron | 40.0% |
| ! | AGAGACAAACTTTGAAAGGG+GGG | + | chr4_1:30674132-30674151 | Msa0543720:intron | 40.0% |
| GAGGAGATTAGAGAAGGATT+GGG | + | chr4_1:30674154-30674173 | Msa0543720:intron | 40.0% | |
| AGGAGATTAGAGAAGGATTG+GGG | + | chr4_1:30674155-30674174 | Msa0543720:intron | 40.0% | |
| !! | ACTTATTTGCTGTGGGATGA+TGG | + | chr4_1:30674472-30674491 | Msa0543720:intron | 40.0% |
| !! | CTTATTTGCTGTGGGATGAT+GGG | + | chr4_1:30674473-30674492 | Msa0543720:intron | 40.0% |
| ! | TTGATACCTAGGACTTGTTC+AGG | + | chr4_1:30674537-30674556 | Msa0543720:intron | 40.0% |
| ! | TGATACCTAGGACTTGTTCA+GGG | + | chr4_1:30674538-30674557 | Msa0543720:intron | 40.0% |
| GCTGTCAGCAAGGATTATAA+TGG | - | chr4_1:30674780-30674799 | None:intergenic | 40.0% | |
| ! | AATTTTGCATGCTGTCAGCA+AGG | - | chr4_1:30674790-30674809 | None:intergenic | 40.0% |
| ! | AAATTAAAGGTTGGCCCTGA+CGG | - | chr4_1:30674833-30674852 | None:intergenic | 40.0% |
| CAGAAGACATAGGAGAAAAC+AGG | + | chr4_1:30674930-30674949 | Msa0543720:CDS | 40.0% | |
| AGGAGAAAACAGGATATCAG+TGG | + | chr4_1:30674940-30674959 | Msa0543720:CDS | 40.0% | |
| AGTGGCCAAAGTGATATTTC+TGG | + | chr4_1:30674958-30674977 | Msa0543720:CDS | 40.0% | |
| GAACCGAAAATCCCAACTAT+CGG | + | chr4_1:30675205-30675224 | Msa0543720:CDS | 40.0% | |
| TAAAGGTCGGACCAATTGTT+AGG | - | chr4_1:30675739-30675758 | None:intergenic | 40.0% | |
| !! | CTTTAAAATGGGCAGTGGAT+GGG | + | chr4_1:30675754-30675773 | Msa0543720:intron | 40.0% |
| ! | TTCCTAACTGACTGATTTCC+AGG | + | chr4_1:30675777-30675796 | Msa0543720:intron | 40.0% |
| AACCTGGAAATCAGTCAGTT+AGG | - | chr4_1:30675782-30675801 | None:intergenic | 40.0% | |
| AATTAACCCGGAGTCCATAA+AGG | + | chr4_1:30675829-30675848 | Msa0543720:intron | 40.0% | |
| TAGGCTTTCATAGTTGCCTT+AGG | - | chr4_1:30676070-30676089 | None:intergenic | 40.0% | |
| GTTCAGAGAGGAAAAATTGG+AGG | + | chr4_1:30676258-30676277 | Msa0543720:intron | 40.0% | |
| TGAGGCTCAGTTAAACAAAG+AGG | + | chr4_1:30676596-30676615 | Msa0543720:CDS | 40.0% | |
| GCTCAGTTAAACAAAGAGGA+TGG | + | chr4_1:30676600-30676619 | Msa0543720:CDS | 40.0% | |
| AGTTGCAAGATGAACTGAAG+AGG | + | chr4_1:30676819-30676838 | Msa0543720:intron | 40.0% | |
| !! | TTCTAGAATTGGTGCTGATG+AGG | + | chr4_1:30677017-30677036 | Msa0543720:CDS | 40.0% |
| GTAAGCAATGGTGAGAATAC+TGG | + | chr4_1:30677060-30677079 | Msa0543720:CDS | 40.0% | |
| TCTGTGGAAGAGTTACAACA+AGG | + | chr4_1:30677162-30677181 | Msa0543720:CDS | 40.0% | |
| ! | CCCAATGTTTTGCTTAGCTA+AGG | - | chr4_1:30677236-30677255 | None:intergenic | 40.0% |
| AATGTCTTTCATCTGTGTGG+GGG | + | chr4_1:30677271-30677290 | Msa0543720:intron | 40.0% | |
| ATCGATTGACAAGAGTTGTG+AGG | + | chr4_1:30677892-30677911 | Msa0543720:CDS | 40.0% | |
| TACTTCAACTCCATTGTCAG+GGG | - | chr4_1:30677921-30677940 | None:intergenic | 40.0% | |
| GTTACTTCAACTCCATTGTC+AGG | - | chr4_1:30677923-30677942 | None:intergenic | 40.0% | |
| !!! | TTGCATTCTTTTTGGGATGC+CGG | + | chr4_1:30678092-30678111 | Msa0543720:intron | 40.0% |
| ACTTCAATCCTGGATTCCTT+CGG | - | chr4_1:30678241-30678260 | None:intergenic | 40.0% | |
| AACCTGTGAATAATTGCTGC+GGG | - | chr4_1:30678422-30678441 | None:intergenic | 40.0% | |
| ! | CACAGGTTAGTTCTTCTTTG+AGG | + | chr4_1:30678434-30678453 | Msa0543720:intron | 40.0% |
| TGAGGGTAAAAACGAGAATG+TGG | + | chr4_1:30678534-30678553 | Msa0543720:CDS | 40.0% | |
| CTTTAGTACGTGTCTTTGCA+TGG | + | chr4_1:30678736-30678755 | Msa0543720:three_prime_UTR | 40.0% | |
| GTTCTGTACTTGTCTTTGCA+TGG | + | chr4_1:30678771-30678790 | Msa0543720:three_prime_UTR | 40.0% | |
| GAAAATGACATAGGCATGTG+AGG | - | chr4_1:30678824-30678843 | None:intergenic | 40.0% | |
| !!! | CACATGCCTATGTCATTTTC+TGG | + | chr4_1:30678824-30678843 | Msa0543720:three_prime_UTR | 40.0% |
| !!! | CATGCCTATGTCATTTTCTG+GGG | + | chr4_1:30678826-30678845 | Msa0543720:three_prime_UTR | 40.0% |
| !!! | ATGCCTATGTCATTTTCTGG+GGG | + | chr4_1:30678827-30678846 | Msa0543720:three_prime_UTR | 40.0% |
| AAACCCCCAGAAAATGACAT+AGG | - | chr4_1:30678833-30678852 | None:intergenic | 40.0% | |
| ! | GCGTGTTGTTGCTGAGAAAA+AGG | - | chr4_1:30670853-30670872 | None:intergenic | 45.0% |
| GGAAGAAAATCGTCGAAGCT+CGG | - | chr4_1:30671019-30671038 | None:intergenic | 45.0% | |
| TTGAGAGAGCCCTACAATGT+TGG | + | chr4_1:30671156-30671175 | Msa0543720:intron | 45.0% | |
| TGAGAGAGCCCTACAATGTT+GGG | + | chr4_1:30671157-30671176 | Msa0543720:intron | 45.0% | |
| ! | GAGTTCGTGGTTTCAAGTCT+TGG | + | chr4_1:30671302-30671321 | Msa0543720:intron | 45.0% |
| CAGCCTCTTGTGTAAAAACC+AGG | + | chr4_1:30671328-30671347 | Msa0543720:intron | 45.0% | |
| TATTGTACGCAGCTTTACCC+TGG | - | chr4_1:30671349-30671368 | None:intergenic | 45.0% | |
| CGTACAATACCCCAAATGGT+GGG | + | chr4_1:30671360-30671379 | Msa0543720:intron | 45.0% | |
| AAAGAGCCTCACTAGTGCTT+GGG | - | chr4_1:30671499-30671518 | None:intergenic | 45.0% | |
| TTGTGGATCGCAGAGAATAG+CGG | - | chr4_1:30671841-30671860 | None:intergenic | 45.0% | |
| CTATTCTCTGCGATCCACAA+CGG | + | chr4_1:30671841-30671860 | Msa0543720:intron | 45.0% | |
| TGTCTTCTTGCAGACGTAGA+TGG | + | chr4_1:30672064-30672083 | Msa0543720:intron | 45.0% | |
| ACAGACAAACACAGGACTAG+TGG | - | chr4_1:30672121-30672140 | None:intergenic | 45.0% | |
| !! | AGTGTGCTGACTAAACAAGC+TGG | - | chr4_1:30672374-30672393 | None:intergenic | 45.0% |
| AAATGAAATATCCGCGCTGC+TGG | - | chr4_1:30672612-30672631 | None:intergenic | 45.0% | |
| CAGGCTTACATGGATGTATC+TGG | + | chr4_1:30672779-30672798 | Msa0543720:intron | 45.0% | |
| GCCATGAAGTAACAGCCAAA+AGG | - | chr4_1:30672948-30672967 | None:intergenic | 45.0% | |
| ! | GCTGTTACTTCATGGCTACA+TGG | + | chr4_1:30672952-30672971 | Msa0543720:intron | 45.0% |
| CTTCATGGCTACATGGACAT+AGG | + | chr4_1:30672959-30672978 | Msa0543720:intron | 45.0% | |
| CAAATCTCATAGCCTTCGGA+TGG | + | chr4_1:30673021-30673040 | Msa0543720:intron | 45.0% | |
| ! | ACTTTTTGCTCTTACGTGGG+AGG | + | chr4_1:30673235-30673254 | Msa0543720:intron | 45.0% |
| ATCTTGTGTCTAACCGCGAA+TGG | - | chr4_1:30673549-30673568 | None:intergenic | 45.0% | |
| CCATGATCCACGACAAGTTA+GGG | - | chr4_1:30673795-30673814 | None:intergenic | 45.0% | |
| ACCATGATCCACGACAAGTT+AGG | - | chr4_1:30673796-30673815 | None:intergenic | 45.0% | |
| TGAGGTCTCCAGAGAAAAGA+AGG | + | chr4_1:30673981-30674000 | Msa0543720:CDS | 45.0% | |
| GGAGGAGATTAGAGAAGGAT+TGG | + | chr4_1:30674153-30674172 | Msa0543720:intron | 45.0% | |
| GGAGATTAGAGAAGGATTGG+GGG | + | chr4_1:30674156-30674175 | Msa0543720:intron | 45.0% | |
| AGTTACGGGGTTTGATACCT+AGG | + | chr4_1:30674526-30674545 | Msa0543720:intron | 45.0% | |
| AAACTCCCTGAACAAGTCCT+AGG | - | chr4_1:30674546-30674565 | None:intergenic | 45.0% | |
| TATTGTGAAGGGGAAACCCT+TGG | + | chr4_1:30675639-30675658 | Msa0543720:intron | 45.0% | |
| GAGAGAAATCTCTCCTCCAA+GGG | - | chr4_1:30675658-30675677 | None:intergenic | 45.0% | |
| !! | CCACTGCCCATTTTAAAGGT+CGG | - | chr4_1:30675752-30675771 | None:intergenic | 45.0% |
| ! | CCATCCACTGCCCATTTTAA+AGG | - | chr4_1:30675756-30675775 | None:intergenic | 45.0% |
| !! | CCTTTAAAATGGGCAGTGGA+TGG | + | chr4_1:30675753-30675772 | Msa0543720:intron | 45.0% |
| TCTGCCAAGCTGAATCTACA+AGG | + | chr4_1:30676159-30676178 | Msa0543720:intron | 45.0% | |
| TGTGCCTTGTAGATTCAGCT+TGG | - | chr4_1:30676166-30676185 | None:intergenic | 45.0% | |
| AGTTGCATCCTTGTTCAGAG+AGG | + | chr4_1:30676246-30676265 | Msa0543720:intron | 45.0% | |
| CTTCTTGAACACTCTCATCC+AGG | - | chr4_1:30676545-30676564 | None:intergenic | 45.0% | |
| !! | GGATGAGAGTGTTCAAGAAG+TGG | + | chr4_1:30676545-30676564 | Msa0543720:CDS | 45.0% |
| ! | AAGAGGATGGGGAGTGTAAA+AGG | + | chr4_1:30676613-30676632 | Msa0543720:CDS | 45.0% |
| ! | ATGGGGAGTGTAAAAGGTAC+TGG | + | chr4_1:30676619-30676638 | Msa0543720:intron | 45.0% |
| !! | GATCTCCGAACCTTTGAAGT+CGG | - | chr4_1:30676981-30677000 | None:intergenic | 45.0% |
| CGGATCTCCTTGCAGAAAAA+GGG | + | chr4_1:30677122-30677141 | Msa0543720:CDS | 45.0% | |
| ATGCCCAGTGGCAAGATTAA+AGG | - | chr4_1:30677756-30677775 | None:intergenic | 45.0% | |
| TAATCTTGCCACTGGGCATA+TGG | + | chr4_1:30677757-30677776 | Msa0543720:intron | 45.0% | |
| TCCAATAACCATATGCCCAG+TGG | - | chr4_1:30677768-30677787 | None:intergenic | 45.0% | |
| TCGGTTGAAACAGCAAGAAG+TGG | + | chr4_1:30677839-30677858 | Msa0543720:CDS | 45.0% | |
| CGGTTGAAACAGCAAGAAGT+GGG | + | chr4_1:30677840-30677859 | Msa0543720:CDS | 45.0% | |
| AAACAGCAAGAAGTGGGAAG+CGG | + | chr4_1:30677846-30677865 | Msa0543720:CDS | 45.0% | |
| GATTGACAAGAGTTGTGAGG+AGG | + | chr4_1:30677895-30677914 | Msa0543720:CDS | 45.0% | |
| ACTAGGCACCAAGATCTTGA+AGG | + | chr4_1:30677941-30677960 | Msa0543720:CDS | 45.0% | |
| AACCATGAACATACAGCCGA+AGG | + | chr4_1:30678222-30678241 | Msa0543720:intron | 45.0% | |
| TTCCTTCGGCTGTATGTTCA+TGG | - | chr4_1:30678227-30678246 | None:intergenic | 45.0% | |
| TGGAATGGCATTACAGGTGA+AGG | + | chr4_1:30678363-30678382 | Msa0543720:CDS | 45.0% | |
| GGAATGGCATTACAGGTGAA+GGG | + | chr4_1:30678364-30678383 | Msa0543720:CDS | 45.0% | |
| ACCTGTGAATAATTGCTGCG+GGG | - | chr4_1:30678421-30678440 | None:intergenic | 45.0% | |
| AACGAGAATGTGGATGTGGA+TGG | + | chr4_1:30678544-30678563 | Msa0543720:CDS | 45.0% | |
| ! | TGTGGATGGTCTTGATGAAG+AGG | + | chr4_1:30678558-30678577 | Msa0543720:CDS | 45.0% |
| AACACTGGTACAGCTACTCG+TGG | - | chr4_1:30670706-30670725 | None:intergenic | 50.0% | |
| GGAGAAGTAACGCTGAACAC+TGG | - | chr4_1:30670721-30670740 | None:intergenic | 50.0% | |
| GAGAGAGCCCTACAATGTTG+GGG | + | chr4_1:30671158-30671177 | Msa0543720:intron | 50.0% | |
| GTCATGTGACTGAGAGTTCG+TGG | + | chr4_1:30671289-30671308 | Msa0543720:intron | 50.0% | |
| GCTGCGTACAATACCCCAAA+TGG | + | chr4_1:30671356-30671375 | Msa0543720:intron | 50.0% | |
| GCGTACAATACCCCAAATGG+TGG | + | chr4_1:30671359-30671378 | Msa0543720:intron | 50.0% | |
| ATGAAGGGGTCCCACCATTT+GGG | - | chr4_1:30671373-30671392 | None:intergenic | 50.0% | |
| TGTACTCCTAAGGGCCTGTT+TGG | + | chr4_1:30671447-30671466 | Msa0543720:intron | 50.0% | |
| GTCAATCCAAACAGGCCCTT+AGG | - | chr4_1:30671456-30671475 | None:intergenic | 50.0% | |
| CAAAGAGCCTCACTAGTGCT+TGG | - | chr4_1:30671500-30671519 | None:intergenic | 50.0% | |
| TCTCGAGCCGGTGAATATCT+TGG | - | chr4_1:30673509-30673528 | None:intergenic | 50.0% | |
| !! | AAGATATTCACCGGCTCGAG+AGG | + | chr4_1:30673508-30673527 | Msa0543720:CDS | 50.0% |
| ! | CCCTAACTTGTCGTGGATCA+TGG | + | chr4_1:30673792-30673811 | Msa0543720:intron | 50.0% |
| !! | CTTTTCTCTGGAGACCTCAG+TGG | - | chr4_1:30673980-30673999 | None:intergenic | 50.0% |
| ! | GACAAACTTTGAAAGGGGGG+AGG | + | chr4_1:30674135-30674154 | Msa0543720:intron | 50.0% |
| ATGTCTTCTGTCACTGCACC+AGG | - | chr4_1:30674920-30674939 | None:intergenic | 50.0% | |
| GGTGCAGTGACAGAAGACAT+AGG | + | chr4_1:30674920-30674939 | Msa0543720:intron | 50.0% | |
| GGAGAGAAATCTCTCCTCCA+AGG | - | chr4_1:30675659-30675678 | None:intergenic | 50.0% | |
| !! | CCGACCTTTAAAATGGGCAG+TGG | + | chr4_1:30675749-30675768 | Msa0543720:intron | 50.0% |
| TGTGGAGCCTTTATGGACTC+CGG | - | chr4_1:30675839-30675858 | None:intergenic | 50.0% | |
| GGTGGAACTAGAGATGTCTC+TGG | - | chr4_1:30675948-30675967 | None:intergenic | 50.0% | |
| GATCACAGGTCCGACTTCAA+AGG | + | chr4_1:30676968-30676987 | Msa0543720:intron | 50.0% | |
| CAGGTCCGACTTCAAAGGTT+CGG | + | chr4_1:30676973-30676992 | Msa0543720:CDS | 50.0% | |
| GCGGATCTCCTTGCAGAAAA+AGG | + | chr4_1:30677121-30677140 | Msa0543720:CDS | 50.0% | |
| ! | GCATGCACCCTTTTTCTGCA+AGG | - | chr4_1:30677132-30677151 | None:intergenic | 50.0% |
| GCATGCAGAACGAGATTCTG+TGG | + | chr4_1:30677146-30677165 | Msa0543720:CDS | 50.0% | |
| TCTTTCATCTGTGTGGGGGA+TGG | + | chr4_1:30677275-30677294 | Msa0543720:intron | 50.0% | |
| CCAGAGGTCCAAAACCATAC+AGG | - | chr4_1:30677399-30677418 | None:intergenic | 50.0% | |
| !!! | CCTGTATGGTTTTGGACCTC+TGG | + | chr4_1:30677396-30677415 | Msa0543720:intron | 50.0% |
| GCCACTGGGCATATGGTTAT+TGG | + | chr4_1:30677764-30677783 | Msa0543720:intron | 50.0% | |
| AATGCCCTGCATGCACGTTT+GGG | - | chr4_1:30677820-30677839 | None:intergenic | 50.0% | |
| ! | AAACGTGCATGCAGGGCATT+CGG | + | chr4_1:30677820-30677839 | Msa0543720:intron | 50.0% |
| ! | ATTTTCCCAAGAGCCAGCAG+AGG | - | chr4_1:30678054-30678073 | None:intergenic | 50.0% |
| ACATACAGCCGAAGGAATCC+AGG | + | chr4_1:30678230-30678249 | Msa0543720:intron | 50.0% | |
| TGCTGCGGGGAATCAAATCT+GGG | - | chr4_1:30678408-30678427 | None:intergenic | 50.0% | |
| TTGCTGCGGGGAATCAAATC+TGG | - | chr4_1:30678409-30678428 | None:intergenic | 50.0% | |
| TCCCCGCAGCAATTATTCAC+AGG | + | chr4_1:30678417-30678436 | Msa0543720:CDS | 50.0% | |
| ACAACACGCTCGACGCAACT+TGG | + | chr4_1:30670864-30670883 | Msa0543720:five_prime_UTR | 55.0% | |
| TGTGCCAAAGCTCCCCCTTA+GGG | - | chr4_1:30671255-30671274 | None:intergenic | 55.0% | |
| TTGTGCCAAAGCTCCCCCTT+AGG | - | chr4_1:30671256-30671275 | None:intergenic | 55.0% | |
| ! | AAGGGGGAGCTTTGGCACAA+CGG | + | chr4_1:30671256-30671275 | Msa0543720:intron | 55.0% |
| TGAAGGGGTCCCACCATTTG+GGG | - | chr4_1:30671372-30671391 | None:intergenic | 55.0% | |
| CATGAAGGGGTCCCACCATT+TGG | - | chr4_1:30671374-30671393 | None:intergenic | 55.0% | |
| ! | CAAATGGTGGGACCCCTTCA+TGG | + | chr4_1:30671372-30671391 | Msa0543720:intron | 55.0% |
| CATACGCAGGGTCCATGAAG+GGG | - | chr4_1:30671387-30671406 | None:intergenic | 55.0% | |
| GCATACGCAGGGTCCATGAA+GGG | - | chr4_1:30671388-30671407 | None:intergenic | 55.0% | |
| CTTCATGGACCCTGCGTATG+CGG | + | chr4_1:30671387-30671406 | Msa0543720:intron | 55.0% | |
| TTCATGGACCCTGCGTATGC+GGG | + | chr4_1:30671388-30671407 | Msa0543720:intron | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr4_1:30671399-30671418 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr4_1:30671400-30671419 | None:intergenic | 55.0% | |
| ! | TGCGGGAGCTTTAGTACACC+TGG | + | chr4_1:30671405-30671424 | Msa0543720:intron | 55.0% |
| ! | GGGAGCTTTAGTACACCTGG+AGG | + | chr4_1:30671408-30671427 | Msa0543720:intron | 55.0% |
| TACTGGCCCAAGCACTAGTG+AGG | + | chr4_1:30671490-30671509 | Msa0543720:intron | 55.0% | |
| CTGTTGCATTTCCAGCAGCG+CGG | + | chr4_1:30672598-30672617 | Msa0543720:intron | 55.0% | |
| CGAGCCGGTGAATATCTTGG+AGG | - | chr4_1:30673506-30673525 | None:intergenic | 55.0% | |
| AGGGGGGAGGAGATTAGAGA+AGG | + | chr4_1:30674148-30674167 | Msa0543720:intron | 55.0% | |
| TGGCACGGACACATCAACAC+GGG | - | chr4_1:30674348-30674367 | None:intergenic | 55.0% | |
| CTGGCACGGACACATCAACA+CGG | - | chr4_1:30674349-30674368 | None:intergenic | 55.0% | |
| AAGGACATCGGACACGACAC+TGG | - | chr4_1:30674368-30674387 | None:intergenic | 55.0% | |
| TGTGAAGGGGAAACCCTTGG+AGG | + | chr4_1:30675642-30675661 | Msa0543720:intron | 55.0% | |
| GTGGAGCCTTTATGGACTCC+GGG | - | chr4_1:30675838-30675857 | None:intergenic | 55.0% | |
| TTCATCTGTGTGGGGGATGG+AGG | + | chr4_1:30677278-30677297 | Msa0543720:intron | 55.0% | |
| TCATCTGTGTGGGGGATGGA+GGG | + | chr4_1:30677279-30677298 | Msa0543720:intron | 55.0% | |
| GTCTCCCAAACGTGCATGCA+GGG | + | chr4_1:30677813-30677832 | Msa0543720:intron | 55.0% | |
| GAATGCCCTGCATGCACGTT+TGG | - | chr4_1:30677821-30677840 | None:intergenic | 55.0% | |
| GGTTGACGGCACTTCAATCC+TGG | - | chr4_1:30678251-30678270 | None:intergenic | 55.0% | |
| !! | TGAAGTGCCGTCAACCAGCA+TGG | + | chr4_1:30678255-30678274 | Msa0543720:CDS | 55.0% |
| ! | TGAGCTGCCATGCTGGTTGA+CGG | - | chr4_1:30678265-30678284 | None:intergenic | 55.0% |
| GACAACATGAGCTGCCATGC+TGG | - | chr4_1:30678272-30678291 | None:intergenic | 55.0% | |
| GGCAGCTCATGTTGTCGATG+AGG | + | chr4_1:30678276-30678295 | Msa0543720:CDS | 55.0% | |
| GCTGCGGGGAATCAAATCTG+GGG | - | chr4_1:30678407-30678426 | None:intergenic | 55.0% | |
| AGCAGCAGCACATGTGGACA+TGG | + | chr4_1:30678582-30678601 | Msa0543720:CDS | 55.0% | |
| GTACCCCTAAGGGGGAGCTT+TGG | + | chr4_1:30671248-30671267 | Msa0543720:intron | 60.0% | |
| GTGCCAAAGCTCCCCCTTAG+GGG | - | chr4_1:30671254-30671273 | None:intergenic | 60.0% | |
| CGCATACGCAGGGTCCATGA+AGG | - | chr4_1:30671389-30671408 | None:intergenic | 60.0% | |
| AGAGGTCGGCAGACCATTCG+CGG | + | chr4_1:30673533-30673552 | Msa0543720:CDS | 60.0% | |
| CATCGGACACGACACTGGCA+CGG | - | chr4_1:30674363-30674382 | None:intergenic | 60.0% | |
| CGTCTCCCAAACGTGCATGC+AGG | + | chr4_1:30677812-30677831 | Msa0543720:intron | 60.0% | |
| TGTGAGGAGGCCCCTGACAA+TGG | + | chr4_1:30677908-30677927 | Msa0543720:CDS | 60.0% | |
| !! | CTCTGCCTCTGCTGGCTCTT+GGG | + | chr4_1:30678046-30678065 | Msa0543720:intron | 60.0% |
| AGAGGCAGCAGCAGCACATG+TGG | + | chr4_1:30678576-30678595 | Msa0543720:CDS | 60.0% | |
| !! | TCACCGGCTCGAGAGGCAAG+AGG | + | chr4_1:30673515-30673534 | Msa0543720:CDS | 65.0% |
| CGACCTCTTGCCTCTCGAGC+CGG | - | chr4_1:30673521-30673540 | None:intergenic | 65.0% | |
| CGGCTCGAGAGGCAAGAGGT+CGG | + | chr4_1:30673519-30673538 | Msa0543720:CDS | 65.0% | |
| CAGCAGAGGCAGAGCAGCCA+TGG | - | chr4_1:30678040-30678059 | None:intergenic | 65.0% | |
| CATGGCTGCTCTGCCTCTGC+TGG | + | chr4_1:30678038-30678057 | Msa0543720:intron | 65.0% | |
| !! | GCTCTGCCTCTGCTGGCTCT+TGG | + | chr4_1:30678045-30678064 | Msa0543720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 30670697 | 30678912 | 30670697 | ID=Msa0543720;Name=Msa0543720 |
| chr4_1 | mRNA | 30670697 | 30678912 | 30670697 | ID=Msa0543720-mRNA-1;Parent=Msa0543720;Name=Msa0543720-mRNA-1;_AED=0.32;_eAED=0.32;_QI=141|0.9|1|1|1|0.90|11|303|420 |
| chr4_1 | exon | 30670697 | 30670780 | 30670697 | ID=Msa0543720-mRNA-1:exon:8044;Parent=Msa0543720-mRNA-1 |
| chr4_1 | exon | 30670862 | 30671048 | 30670862 | ID=Msa0543720-mRNA-1:exon:8045;Parent=Msa0543720-mRNA-1 |
| chr4_1 | exon | 30673441 | 30673554 | 30673441 | ID=Msa0543720-mRNA-1:exon:8046;Parent=Msa0543720-mRNA-1 |
| chr4_1 | exon | 30673960 | 30674002 | 30673960 | ID=Msa0543720-mRNA-1:exon:8047;Parent=Msa0543720-mRNA-1 |
| chr4_1 | exon | 30674927 | 30675068 | 30674927 | ID=Msa0543720-mRNA-1:exon:8048;Parent=Msa0543720-mRNA-1 |
| chr4_1 | exon | 30675170 | 30675226 | 30675170 | ID=Msa0543720-mRNA-1:exon:8049;Parent=Msa0543720-mRNA-1 |
| chr4_1 | exon | 30676537 | 30676634 | 30676537 | ID=Msa0543720-mRNA-1:exon:8050;Parent=Msa0543720-mRNA-1 |
| chr4_1 | exon | 30676969 | 30677183 | 30676969 | ID=Msa0543720-mRNA-1:exon:8051;Parent=Msa0543720-mRNA-1 |
| chr4_1 | exon | 30677834 | 30678018 | 30677834 | ID=Msa0543720-mRNA-1:exon:8052;Parent=Msa0543720-mRNA-1 |
| chr4_1 | exon | 30678238 | 30678438 | 30678238 | ID=Msa0543720-mRNA-1:exon:8053;Parent=Msa0543720-mRNA-1 |
| chr4_1 | exon | 30678532 | 30678912 | 30678532 | ID=Msa0543720-mRNA-1:exon:8054;Parent=Msa0543720-mRNA-1 |
| chr4_1 | five_prime_UTR | 30670697 | 30670780 | 30670697 | ID=Msa0543720-mRNA-1:five_prime_utr;Parent=Msa0543720-mRNA-1 |
| chr4_1 | five_prime_UTR | 30670862 | 30670918 | 30670862 | ID=Msa0543720-mRNA-1:five_prime_utr;Parent=Msa0543720-mRNA-1 |
| chr4_1 | CDS | 30670919 | 30671048 | 30670919 | ID=Msa0543720-mRNA-1:cds;Parent=Msa0543720-mRNA-1 |
| chr4_1 | CDS | 30673441 | 30673554 | 30673441 | ID=Msa0543720-mRNA-1:cds;Parent=Msa0543720-mRNA-1 |
| chr4_1 | CDS | 30673960 | 30674002 | 30673960 | ID=Msa0543720-mRNA-1:cds;Parent=Msa0543720-mRNA-1 |
| chr4_1 | CDS | 30674927 | 30675068 | 30674927 | ID=Msa0543720-mRNA-1:cds;Parent=Msa0543720-mRNA-1 |
| chr4_1 | CDS | 30675170 | 30675226 | 30675170 | ID=Msa0543720-mRNA-1:cds;Parent=Msa0543720-mRNA-1 |
| chr4_1 | CDS | 30676537 | 30676634 | 30676537 | ID=Msa0543720-mRNA-1:cds;Parent=Msa0543720-mRNA-1 |
| chr4_1 | CDS | 30676969 | 30677183 | 30676969 | ID=Msa0543720-mRNA-1:cds;Parent=Msa0543720-mRNA-1 |
| chr4_1 | CDS | 30677834 | 30678018 | 30677834 | ID=Msa0543720-mRNA-1:cds;Parent=Msa0543720-mRNA-1 |
| chr4_1 | CDS | 30678238 | 30678438 | 30678238 | ID=Msa0543720-mRNA-1:cds;Parent=Msa0543720-mRNA-1 |
| chr4_1 | CDS | 30678532 | 30678609 | 30678532 | ID=Msa0543720-mRNA-1:cds;Parent=Msa0543720-mRNA-1 |
| chr4_1 | three_prime_UTR | 30678610 | 30678912 | 30678610 | ID=Msa0543720-mRNA-1:three_prime_utr;Parent=Msa0543720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
