AlfalfaGEDB | Msa0638280

M. sativa cultivar zhongmu-4 / Msa0638280

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF01535.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0638280	XP_013443733.1	94.465	831	21	6	1	808	1	829	0.0	1610

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0638280	sp\|Q9SA76\|PPR64_ARATH	55.626	631	231	7	194	779	372	998	0.0	729

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0638280	A0A072TLM0	94.465	831	21	6	1	808	1	829	0.0	1610

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0638280	-0.886220	4.133845e-72	-8.615850e-47
Msa0000550	Msa0638280	-0.845469	3.984125e-59	-8.615850e-47
Msa0001790	Msa0638280	0.820569	6.400414e-53	-8.615850e-47
Msa0001950	Msa0638280	0.829077	6.298852e-55	-8.615850e-47
Msa0004860	Msa0638280	0.813685	2.258191e-51	-8.615850e-47
Msa0004920	Msa0638280	0.833022	6.769642e-56	-8.615850e-47
Msa0006700	Msa0638280	0.838779	2.348040e-57	-8.615850e-47
Msa0007080	Msa0638280	0.803016	4.262977e-49	-8.615850e-47
Msa0008340	Msa0638280	0.825095	5.649440e-54	-8.615850e-47
Msa0008850	Msa0638280	0.821061	4.933622e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0638280	MtrunA17_Chr4g0021311	94.465	831	21	6	1	808	1	829	0.0	1610
Msa0638280	MtrunA17_Chr4g0054111	43.711	318	173	3	222	538	161	473	1.54e-90	293
Msa0638280	MtrunA17_Chr4g0054121	36.111	252	147	7	534	780	21	263	8.01e-39	149
Msa0638280	MtrunA17_Chr8g0391651	23.573	403	272	9	255	654	289	658	2.83e-24	108
Msa0638280	MtrunA17_Chr8g0391651	21.774	372	258	10	281	640	364	714	5.99e-14	75.9
Msa0638280	MtrunA17_Chr8g0391651	22.222	225	170	3	410	632	275	496	9.84e-12	68.9
Msa0638280	MtrunA17_Chr7g0257371	23.288	365	250	8	294	634	120	478	7.50e-24	107
Msa0638280	MtrunA17_Chr7g0257371	21.088	441	277	12	268	649	205	633	6.18e-17	85.5
Msa0638280	MtrunA17_Chr7g0257371	24.138	319	211	8	324	638	359	650	8.13e-16	82.0
Msa0638280	MtrunA17_Chr7g0257371	27.273	187	131	3	464	649	134	316	6.99e-11	66.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0638280	AT1G30610.2	58.043	603	232	6	194	779	372	970	0.0	741
Msa0638280	AT1G30610.1	55.626	631	231	7	194	779	372	998	0.0	729
Msa0638280	AT5G67570.1	40.265	529	310	4	254	780	183	707	1.96e-136	424
Msa0638280	AT5G02860.1	24.213	413	276	11	294	694	138	525	2.12e-28	122
Msa0638280	AT5G02860.1	22.414	348	244	7	328	653	421	764	4.95e-18	89.7
Msa0638280	AT5G02860.4	24.213	413	276	11	294	694	138	525	2.12e-28	122
Msa0638280	AT5G02860.4	22.414	348	244	7	328	653	421	764	4.95e-18	89.7
Msa0638280	AT5G02860.2	24.213	413	276	11	294	694	138	525	2.12e-28	122
Msa0638280	AT5G02860.2	22.414	348	244	7	328	653	421	764	4.95e-18	89.7
Msa0638280	AT5G02860.5	24.213	413	276	11	294	694	138	525	2.12e-28	122

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Find 159 sgRNAs with CRISPR-Local

Find 1276 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTATGGATAGAGGTC+CGG	0.459098	4_3:+33183608	Msa0638280:CDS
AAACAAACAAGTGCTGGATT+TGG	0.355004	4_3:-33199009	None:intergenic
AAACGCTTTCATTACATTCT+TGG	0.195079	4_3:-33199183	None:intergenic
AAAGCTATGGATAGAGGTCC+GGG	0.483846	4_3:+33183609	Msa0638280:CDS
AAAGGAAGCAGAAATCTGAT+GGG	0.650012	4_3:+33183358	Msa0638280:CDS
AAATATATTTCATGCAATGC+AGG	0.501866	4_3:+33185590	Msa0638280:CDS
AAATTCTCAACGGTTTCAGA+AGG	0.569611	4_3:+33198930	Msa0638280:CDS
AACAACAATAACACCGAAGA+TGG	0.497687	4_3:+33183029	Msa0638280:exon
AACAGAAGAATAAAGGGTTT+AGG	0.409845	4_3:+33183331	Msa0638280:CDS
AACAGTGGGAAGGAGCATTT+TGG	0.202841	4_3:+33186579	Msa0638280:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTAATAACTACCATCTT+CGG	-	chr4_3:33183045-33183064	None:intergenic	30.0%
GGTTTCCATGAAAAATGAAT+TGG	+	chr4_3:33183185-33183204	Msa0638280:CDS	30.0%
AGCCTTCAAATATTGATCAA+AGG	-	chr4_3:33183223-33183242	None:intergenic	30.0%
TGATCAATATTTGAAGGCTA+TGG	+	chr4_3:33183224-33183243	Msa0638280:CDS	30.0%
AACAGAAGAATAAAGGGTTT+AGG	+	chr4_3:33183331-33183350	Msa0638280:CDS	30.0%
ATAAAGGGTTTAGGAATGAA+AGG	+	chr4_3:33183340-33183359	Msa0638280:CDS	30.0%
TTTAGACTCAAAATCTGATG+AGG	+	chr4_3:33183401-33183420	Msa0638280:CDS	30.0%
AGAAAGAAATAACAGCAGAA+AGG	+	chr4_3:33183542-33183561	Msa0638280:CDS	30.0%
GAAAGAAATAACAGCAGAAA+GGG	+	chr4_3:33183543-33183562	Msa0638280:CDS	30.0%
AAAATTATCACCACCACTAA+GGG	-	chr4_3:33183577-33183596	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	33182985	33199202	33182985	ID=Msa0638280;Name=Msa0638280
chr4_3	mRNA	33182985	33199202	33182985	ID=Msa0638280-mRNA-1;Parent=Msa0638280;Name=Msa0638280-mRNA-1;_AED=0.07;_eAED=0.07;_QI=63\|0.9\|0.81\|1\|0.8\|0.63\|11\|59\|808
chr4_3	exon	33182985	33183567	33182985	ID=Msa0638280-mRNA-1:exon:7556;Parent=Msa0638280-mRNA-1
chr4_3	exon	33183589	33183853	33183589	ID=Msa0638280-mRNA-1:exon:7557;Parent=Msa0638280-mRNA-1
chr4_3	exon	33184864	33185055	33184864	ID=Msa0638280-mRNA-1:exon:7558;Parent=Msa0638280-mRNA-1
chr4_3	exon	33185530	33185611	33185530	ID=Msa0638280-mRNA-1:exon:7559;Parent=Msa0638280-mRNA-1
chr4_3	exon	33185717	33185908	33185717	ID=Msa0638280-mRNA-1:exon:7560;Parent=Msa0638280-mRNA-1
chr4_3	exon	33186554	33186667	33186554	ID=Msa0638280-mRNA-1:exon:7561;Parent=Msa0638280-mRNA-1
chr4_3	exon	33187252	33187342	33187252	ID=Msa0638280-mRNA-1:exon:7562;Parent=Msa0638280-mRNA-1
chr4_3	exon	33187427	33187584	33187427	ID=Msa0638280-mRNA-1:exon:7563;Parent=Msa0638280-mRNA-1
chr4_3	exon	33188873	33189090	33188873	ID=Msa0638280-mRNA-1:exon:7564;Parent=Msa0638280-mRNA-1
chr4_3	exon	33189118	33189304	33189118	ID=Msa0638280-mRNA-1:exon:7565;Parent=Msa0638280-mRNA-1
chr4_3	exon	33198736	33199202	33198736	ID=Msa0638280-mRNA-1:exon:7566;Parent=Msa0638280-mRNA-1
chr4_3	five_prime_UTR	33182985	33183047	33182985	ID=Msa0638280-mRNA-1:five_prime_utr;Parent=Msa0638280-mRNA-1
chr4_3	CDS	33183048	33183567	33183048	ID=Msa0638280-mRNA-1:cds;Parent=Msa0638280-mRNA-1
chr4_3	CDS	33183589	33183853	33183589	ID=Msa0638280-mRNA-1:cds;Parent=Msa0638280-mRNA-1
chr4_3	CDS	33184864	33185055	33184864	ID=Msa0638280-mRNA-1:cds;Parent=Msa0638280-mRNA-1
chr4_3	CDS	33185530	33185611	33185530	ID=Msa0638280-mRNA-1:cds;Parent=Msa0638280-mRNA-1
chr4_3	CDS	33185717	33185908	33185717	ID=Msa0638280-mRNA-1:cds;Parent=Msa0638280-mRNA-1
chr4_3	CDS	33186554	33186667	33186554	ID=Msa0638280-mRNA-1:cds;Parent=Msa0638280-mRNA-1
chr4_3	CDS	33187252	33187342	33187252	ID=Msa0638280-mRNA-1:cds;Parent=Msa0638280-mRNA-1
chr4_3	CDS	33187427	33187584	33187427	ID=Msa0638280-mRNA-1:cds;Parent=Msa0638280-mRNA-1
chr4_3	CDS	33188873	33189090	33188873	ID=Msa0638280-mRNA-1:cds;Parent=Msa0638280-mRNA-1
chr4_3	CDS	33189118	33189304	33189118	ID=Msa0638280-mRNA-1:cds;Parent=Msa0638280-mRNA-1
chr4_3	CDS	33198736	33199143	33198736	ID=Msa0638280-mRNA-1:cds;Parent=Msa0638280-mRNA-1
chr4_3	three_prime_UTR	33199144	33199202	33199144	ID=Msa0638280-mRNA-1:three_prime_utr;Parent=Msa0638280-mRNA-1

Gene Sequence

>Msa0638280

ATGGTAGTTATTAGCTTGGAATTCAACGGGAACTTTACTGCCTCTGCTTTGCATTATGGTGCCAATTCTTTCTCTTTCTCTTCCTCGTCCTATCCACTTCTTTCTCGTTCTCGAAATCTCAATTTTAACCCAGTTATGGTTTCCATGAAAAATGAATTGGAATTTAAACCATCCTTTGATCAATATTTGAAGGCTATGGAATCTGTCAAGAACAACACACTAGTAAAAAAAAAGGGTCTTCATAATGAGTTTCAAGATGATGAAGTATCCTCCTCCAGCGGAAAACAGAAGAATAAAGGGTTTAGGAATGAAAGGAAGCAGAAATCTGATGGGTCGAAGCGCCGGAGTCGTAGTTTAGACTCAAAATCTGATGAGGTTGATAGTATTAGAGAAAGAGATAACATAATTAAGTCGAATTTGAACGGTGGCCGTGGTGGGAGTGTTGTAGAGAGAGGAGTTACTTATGATTTAGAACAACAAGTTGTTAGTATCAGAGAAAGAAATAACAGCAGAAAGGGTGATAATTTTGTAGATAGAAAAAAAGCTATGGATAGAGGTCCGGGTAAAAGATATAGCGAAATTGAGAGTATGACGAATAGAAATGGACGGAGGAATGTCAAGTCGAATGGAAGTAGTAAGCGATTTCTTAATAGGGGTTATGATTCTGATGATTTGGTGGTGGAACGAGCAGCATTCAAGAATCTTGAGGATCCTAACAATGTTATCAGTAAGGCACACTTTTCGCATAAAGAAATGGAGGAGAGAATCCAGAAGCTAGCTAAACAGTTGAATGGTGTGGACATCAATTTACCTGAATGGATGTTTTCTAAGATGATCAGAAGTGCAAAGCTCAAATTTAATGACTATTCCATAAGAAGGCTTATCACAATCTTAGGCAATCTAGGAAACTGGCAGCGAGTGATACAAGTCATTGAATGGCTTCAAACACGTGAGCGTTTTCAATCCCATAAGCCAAGGCATGTATATAATGCGGCACTTGATGCACTTGGGAAGTTGAGGAGACCAGTGGAAGCACTAAATATATTTCATGCAATGCAGCAACAAATGTCGACGTATCCTGACTTAGTAGCTTATCATAGTATTGCTGTTACTCTTGGACAAGCAGGGCACATGAAGCAACTCTTTGATGTGATAGATATCATGCAATCTCCACCAAAGAAGAAGTTCAATAAAGGGATATTCGAGAATTGGGACCCAAGGCTGGAACCTGATATCGTAGTTTATAATGCAGTCCTTAATGCATGTGTTAAGGGGAAACAGTGGGAAGGAGCATTTTGGGTTTTACAGCAGTTAAAGAAGCAGAACATACAACCTTCTGCCGCGACATATGGTCTAGTTATGGAGGTGATGTTTTCATGTGGCAAGTACAACTTGGTTCATGATTTTTTTAGAAAACTTCAGAAATCTTCTATTCCTAATCCATTGACATATAGAGTTCTCGTGAATACATTTTGGAAAGAGGGAAAAATTGATGAGGCTGTCTCGGCTGTCCATGAAATGGAAAGACGTGGAATTGTTGGTTCTGCTTCTCTTTATTATGATCTAGCTCGATGCCTCTGTACAGCTGGACGAAGTCGCGAGGCACTGATGCAGATAGACAAGATATGTAAGGTTGCAAATAAACCACTGGTGGTGACCTACACTGGCTTGATGCAAGCATGTCTAGACTCTGGAAACATTCAAGACGGATCTTACATTTTTGAGAAAATGAAGGACATTTGTGCTCCAAATCTGGTTACTTACAACATAATGCTGAAAGCATACGTTGATCATGGGATGTTTCGAGAAGCTAAAGAGTTATTTGAGCAAATAAATGATGATTACAAAATGCGAGTGATACCAGATATATACACATTTAATACCATGTTAGATGCATGTGCTGCAGAAAAAAGATGGGATTATTTTGACCATGTTTACCAGAGGATGCTGTACCATGGTTATCACTTCAATCCAAAACGACATCTTCGAATGATACTGGAGGCTTCAAGAACTGGAAAGGAAGAGCCATTGGAGATAACATGGAAGCACTTGGCCGCTACAGATCGAATTCCACCAGTTTCTCTAATCAAGGAGAGGTTCTGTACAAAGCTCGAGAAGGATGATTATGTTGTTGCTCTCCAATGCATCACAATTAGCACACCAAAAGATTTGCAACCATTTTCAAAGTTGTCATGGTTGAATCTATTCAAAGAAAATTCTCAACGGTTTCAGAAGGATACAGTTGTCAGGCTTATGAATGCAGCCAGTAATGTAATTTCCAATAATAGTGTGCCAAATCCAGCACTTGTTTGTTTAATTCAATCATGCAAAGATTTTTGTTTTGCCACTGATCTCAGTCTAGCTGACATGGATTCAGCAAACAATGTATTTGCATTAGAAAGCAAACAGGAAGTAAACCAATACTAG

Protein sequence

>Msa0638280

MVVISLEFNGNFTASALHYGANSFSFSSSSYPLLSRSRNLNFNPVMVSMKNELEFKPSFDQYLKAMESVKNNTLVKKKGLHNEFQDDEVSSSSGKQKNKGFRNERKQKSDGSKRRSRSLDSKSDEVDSIRERDNIIKSNLNGGRGGSVVERGVTYDLEQQVVSIRERNNSRKGDNFVDRKKAMDRGPGKRYSEIESMTNRNGRRNVKSNGSSKRFLNRGYDSDDLVVERAAFKNLEDPNNVISKAHFSHKEMEERIQKLAKQLNGVDINLPEWMFSKMIRSAKLKFNDYSIRRLITILGNLGNWQRVIQVIEWLQTRERFQSHKPRHVYNAALDALGKLRRPVEALNIFHAMQQQMSTYPDLVAYHSIAVTLGQAGHMKQLFDVIDIMQSPPKKKFNKGIFENWDPRLEPDIVVYNAVLNACVKGKQWEGAFWVLQQLKKQNIQPSAATYGLVMEVMFSCGKYNLVHDFFRKLQKSSIPNPLTYRVLVNTFWKEGKIDEAVSAVHEMERRGIVGSASLYYDLARCLCTAGRSREALMQIDKICKVANKPLVVTYTGLMQACLDSGNIQDGSYIFEKMKDICAPNLVTYNIMLKAYVDHGMFREAKELFEQINDDYKMRVIPDIYTFNTMLDACAAEKRWDYFDHVYQRMLYHGYHFNPKRHLRMILEASRTGKEEPLEITWKHLAATDRIPPVSLIKERFCTKLEKDDYVVALQCITISTPKDLQPFSKLSWLNLFKENSQRFQKDTVVRLMNAASNVISNNSVPNPALVCLIQSCKDFCFATDLSLADMDSANNVFALESKQEVNQY*