Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0547090 | XP_013456006.1 | 96.452 | 620 | 2 | 2 | 1 | 600 | 1 | 620 | 0.0 | 1222 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0547090 | sp|Q9SE43|REV_ARATH | 82.010 | 617 | 87 | 6 | 3 | 600 | 1 | 612 | 0.0 | 1043 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0547090 | A0A072UK13 | 96.452 | 620 | 2 | 2 | 1 | 600 | 1 | 620 | 0.0 | 1222 |
Gene ID | Type | Classification |
---|---|---|
Msa0547090 | TF | HB-HD-ZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0547090 | Msa0642980 | 0.882972 | 6.652593e-71 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0547090 | MtrunA17_Chr4g0028991 | 96.452 | 620 | 2 | 2 | 1 | 600 | 1 | 620 | 0.0 | 1222 |
Msa0547090 | MtrunA17_Chr2g0326731 | 77.939 | 621 | 108 | 6 | 3 | 600 | 1 | 615 | 0.0 | 1002 |
Msa0547090 | MtrunA17_Chr2g0292391 | 69.836 | 610 | 150 | 5 | 19 | 598 | 4 | 609 | 0.0 | 870 |
Msa0547090 | MtrunA17_Chr2g0331131 | 66.230 | 610 | 164 | 9 | 24 | 600 | 10 | 610 | 0.0 | 803 |
Msa0547090 | MtrunA17_Chr8g0340411 | 65.303 | 611 | 170 | 11 | 21 | 600 | 7 | 606 | 0.0 | 792 |
Msa0547090 | MtrunA17_Chr3g0140351 | 65.615 | 602 | 176 | 7 | 24 | 600 | 16 | 611 | 0.0 | 790 |
Msa0547090 | MtrunA17_Chr3g0095891 | 94.382 | 89 | 5 | 0 | 599 | 687 | 373 | 461 | 1.17e-49 | 180 |
Msa0547090 | MtrunA17_Chr5g0442921 | 89.888 | 89 | 8 | 1 | 599 | 687 | 469 | 556 | 1.66e-46 | 173 |
Msa0547090 | MtrunA17_Chr2g0331581 | 24.621 | 528 | 275 | 20 | 29 | 463 | 143 | 640 | 9.97e-22 | 100 |
Msa0547090 | MtrunA17_Chr2g0322731 | 24.515 | 412 | 232 | 16 | 192 | 575 | 345 | 705 | 9.78e-16 | 81.3 |
Msa0547090 | MtrunA17_Chr2g0322731 | 34.653 | 101 | 59 | 2 | 12 | 109 | 87 | 183 | 4.40e-12 | 69.7 |
Msa0547090 | MtrunA17_Chr7g0275731 | 40.698 | 86 | 49 | 2 | 599 | 684 | 401 | 484 | 1.90e-14 | 76.6 |
Msa0547090 | MtrunA17_Chr7g0267171 | 34.234 | 111 | 64 | 2 | 583 | 684 | 355 | 465 | 4.48e-14 | 75.1 |
Msa0547090 | MtrunA17_Chr4g0024351 | 22.628 | 411 | 239 | 15 | 192 | 574 | 304 | 663 | 6.99e-12 | 68.9 |
Msa0547090 | MtrunA17_Chr4g0024351 | 35.354 | 99 | 57 | 2 | 9 | 104 | 44 | 138 | 5.71e-11 | 65.9 |
Msa0547090 | MtrunA17_Chr6g0484901 | 31.915 | 94 | 63 | 1 | 591 | 684 | 399 | 491 | 1.88e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0547090 | AT5G60690.1 | 82.010 | 617 | 87 | 6 | 3 | 600 | 1 | 612 | 0.0 | 1043 |
Msa0547090 | AT2G34710.1 | 69.218 | 614 | 155 | 6 | 19 | 600 | 16 | 627 | 0.0 | 855 |
Msa0547090 | AT1G30490.1 | 66.879 | 628 | 169 | 7 | 7 | 600 | 2 | 624 | 0.0 | 842 |
Msa0547090 | AT4G32880.1 | 64.935 | 616 | 178 | 9 | 17 | 600 | 3 | 612 | 0.0 | 801 |
Msa0547090 | AT1G52150.3 | 66.993 | 612 | 153 | 10 | 24 | 600 | 13 | 610 | 0.0 | 798 |
Msa0547090 | AT1G52150.2 | 66.993 | 612 | 154 | 10 | 24 | 600 | 13 | 611 | 0.0 | 798 |
Msa0547090 | AT1G52150.1 | 66.993 | 612 | 153 | 10 | 24 | 600 | 13 | 610 | 0.0 | 797 |
Msa0547090 | AT3G59080.2 | 68.539 | 89 | 27 | 1 | 599 | 687 | 412 | 499 | 4.54e-35 | 140 |
Msa0547090 | AT3G59080.1 | 68.539 | 89 | 27 | 1 | 599 | 687 | 448 | 535 | 8.05e-35 | 139 |
Msa0547090 | AT2G42980.1 | 67.033 | 91 | 27 | 2 | 599 | 687 | 438 | 527 | 1.06e-32 | 133 |
Msa0547090 | AT5G32670.1 | 67.143 | 70 | 23 | 0 | 272 | 341 | 37 | 106 | 5.40e-26 | 106 |
Msa0547090 | AT1G79840.3 | 23.511 | 638 | 347 | 27 | 28 | 580 | 46 | 627 | 3.71e-24 | 108 |
Msa0547090 | AT1G79840.6 | 23.511 | 638 | 347 | 27 | 28 | 580 | 46 | 627 | 3.71e-24 | 108 |
Msa0547090 | AT1G79840.1 | 23.511 | 638 | 347 | 27 | 28 | 580 | 104 | 685 | 3.85e-24 | 108 |
Msa0547090 | AT1G79840.2 | 23.511 | 638 | 347 | 27 | 28 | 580 | 133 | 714 | 8.75e-24 | 107 |
Msa0547090 | AT1G79840.4 | 24.335 | 526 | 306 | 21 | 28 | 479 | 104 | 611 | 5.03e-23 | 104 |
Msa0547090 | AT5G52170.3 | 23.474 | 426 | 260 | 13 | 29 | 401 | 61 | 473 | 4.29e-15 | 79.7 |
Msa0547090 | AT5G52170.1 | 23.474 | 426 | 260 | 13 | 29 | 401 | 61 | 473 | 4.29e-15 | 79.7 |
Msa0547090 | AT5G52170.2 | 23.861 | 373 | 222 | 10 | 29 | 351 | 61 | 421 | 6.20e-15 | 79.0 |
Msa0547090 | AT3G52500.1 | 33.333 | 102 | 61 | 2 | 591 | 685 | 367 | 468 | 8.95e-14 | 74.7 |
Msa0547090 | AT1G01300.1 | 38.372 | 86 | 51 | 2 | 599 | 684 | 401 | 484 | 4.17e-13 | 72.8 |
Msa0547090 | AT4G21750.2 | 23.310 | 429 | 243 | 18 | 175 | 575 | 306 | 676 | 4.85e-13 | 73.2 |
Msa0547090 | AT4G21750.1 | 23.310 | 429 | 243 | 18 | 175 | 575 | 306 | 676 | 4.85e-13 | 73.2 |
Msa0547090 | AT4G21750.3 | 23.310 | 429 | 243 | 18 | 175 | 575 | 306 | 676 | 4.85e-13 | 73.2 |
Msa0547090 | AT4G21750.4 | 23.310 | 429 | 243 | 18 | 175 | 575 | 306 | 676 | 4.85e-13 | 73.2 |
Msa0547090 | AT1G05230.8 | 24.272 | 412 | 233 | 16 | 192 | 575 | 300 | 660 | 7.45e-13 | 72.4 |
Msa0547090 | AT1G05230.4 | 24.272 | 412 | 233 | 16 | 192 | 575 | 300 | 660 | 7.45e-13 | 72.4 |
Msa0547090 | AT1G05230.9 | 24.272 | 412 | 233 | 16 | 192 | 575 | 300 | 660 | 7.45e-13 | 72.4 |
Msa0547090 | AT1G05230.10 | 24.272 | 412 | 233 | 16 | 192 | 575 | 300 | 660 | 7.45e-13 | 72.4 |
Msa0547090 | AT1G05230.7 | 24.272 | 412 | 233 | 16 | 192 | 575 | 300 | 660 | 7.45e-13 | 72.4 |
Msa0547090 | AT1G05230.11 | 24.272 | 412 | 233 | 16 | 192 | 575 | 300 | 660 | 7.45e-13 | 72.4 |
Msa0547090 | AT1G05230.2 | 24.272 | 412 | 233 | 16 | 192 | 575 | 300 | 660 | 7.45e-13 | 72.4 |
Msa0547090 | AT1G05230.6 | 24.272 | 412 | 233 | 16 | 192 | 575 | 300 | 660 | 7.45e-13 | 72.4 |
Msa0547090 | AT1G05230.5 | 24.272 | 412 | 233 | 16 | 192 | 575 | 300 | 660 | 7.45e-13 | 72.4 |
Msa0547090 | AT1G05230.1 | 24.272 | 412 | 233 | 16 | 192 | 575 | 300 | 660 | 7.45e-13 | 72.4 |
Msa0547090 | AT1G05230.3 | 24.757 | 412 | 229 | 17 | 192 | 575 | 300 | 658 | 5.00e-12 | 69.7 |
Msa0547090 | AT3G18490.1 | 34.653 | 101 | 65 | 1 | 584 | 684 | 401 | 500 | 1.30e-11 | 68.2 |
Msa0547090 | AT1G05230.12 | 26.460 | 291 | 177 | 11 | 192 | 463 | 300 | 572 | 2.50e-11 | 67.4 |
Msa0547090 | AT1G25510.1 | 35.714 | 98 | 57 | 2 | 592 | 684 | 387 | 483 | 3.79e-11 | 66.6 |
Find 194 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGCTCCTGCCCGGGATTTC+TGG | 0.127870 | 4_1:+39816798 | Msa0547090:CDS |
GATAGAATATGACAAGTTTA+AGG | 0.143295 | 4_1:-39814693 | None:intergenic |
AAATCTGCACTTTCAATAAT+TGG | 0.146871 | 4_1:+39819297 | Msa0547090:CDS |
AGAAGAGCTACTTAAATTCT+TGG | 0.189495 | 4_1:-39817675 | None:intergenic |
CATCACCAACATGCTTATTA+AGG | 0.209228 | 4_1:+39814249 | Msa0547090:five_prime_UTR |
CTCAATGGTTCCTCCATTTC+CGG | 0.218751 | 4_1:-39816666 | None:intergenic |
ATTATTGAAAGTGCAGATTT+AGG | 0.236224 | 4_1:-39819294 | None:intergenic |
GAACGTTCCTCCTGCGGTTT+TGG | 0.238613 | 4_1:+39817842 | Msa0547090:intron |
ACCAAGATAAACGATCTTTA+AGG | 0.256930 | 4_1:-39816601 | None:intergenic |
AGTTTAAGGGAAAATGAAAA+TGG | 0.259645 | 4_1:-39814679 | None:intergenic |
TCAAGATAAATGAAAGTTCT+TGG | 0.266760 | 4_1:-39814760 | None:intergenic |
TAGGGATATTCATCTGTTAC+AGG | 0.266795 | 4_1:+39818257 | Msa0547090:CDS |
GAAACATTGTGAAAACTTCT+AGG | 0.277838 | 4_1:-39816640 | None:intergenic |
GATGCTCCATTGGTGCCTTC+TGG | 0.293806 | 4_1:+39818578 | Msa0547090:CDS |
AGAAAATGAACAAGAAAGTT+TGG | 0.295020 | 4_1:-39814641 | None:intergenic |
GGCTTCAATGACGCTGTAAA+TGG | 0.300316 | 4_1:+39817581 | Msa0547090:CDS |
TAAACTTCATTGCACTTCAT+TGG | 0.308323 | 4_1:-39819384 | None:intergenic |
GCAAAGATCCCAACCGAATC+TGG | 0.313476 | 4_1:-39816374 | None:intergenic |
GAGAGGTCCCTGTCTGGTTC+TGG | 0.318135 | 4_1:+39816954 | Msa0547090:CDS |
GTGGCTACCTGCTCAATCTT+TGG | 0.322456 | 4_1:-39817434 | None:intergenic |
TGAGCAGCAGCAGTTGGATT+AGG | 0.323234 | 4_1:-39816984 | None:intergenic |
TGCAGATGCTTGAAGTTATT+AGG | 0.326140 | 4_1:+39818193 | Msa0547090:intron |
TGATTGCCAGTGAATCTTGT+AGG | 0.327004 | 4_1:-39817969 | None:intergenic |
ATAGAATATGACAAGTTTAA+GGG | 0.328788 | 4_1:-39814692 | None:intergenic |
GATAGGCACTTCGATATATT+AGG | 0.337752 | 4_1:+39817337 | Msa0547090:intron |
CAGTATCAATCAAGAGAAAA+AGG | 0.339257 | 4_1:-39814277 | None:intergenic |
TAAAGTGGTCGTAGTACTTC+TGG | 0.341715 | 4_1:-39817195 | None:intergenic |
ATCTGATGATGTTGTTTGTT+TGG | 0.342174 | 4_1:+39819257 | Msa0547090:CDS |
TCCCTGTCTGGTTCTGGCAC+TGG | 0.345502 | 4_1:+39816960 | Msa0547090:CDS |
TCTGGGAACATTTCATCAAT+TGG | 0.355893 | 4_1:-39818554 | None:intergenic |
CTTGAAGTTATTAGGCTTGA+AGG | 0.356810 | 4_1:+39818201 | Msa0547090:CDS |
CAAGATAAGTTTGAATGAAA+TGG | 0.365439 | 4_1:-39814435 | None:intergenic |
GGCACCAATGGAGCATCATC+TGG | 0.365656 | 4_1:-39818572 | None:intergenic |
TCTTAGATACACTACAACTT+TGG | 0.376901 | 4_1:+39816823 | Msa0547090:CDS |
AGTATGGAATCTACCTTTGT+AGG | 0.379475 | 4_1:-39816455 | None:intergenic |
ATTGATAAGCATCTAGATTC+AGG | 0.380570 | 4_1:+39814866 | Msa0547090:CDS |
ACAATGTTTCCTGCCGGAAA+TGG | 0.381342 | 4_1:+39816653 | Msa0547090:CDS |
GGTGAAGTGGTATACGGATT+AGG | 0.388453 | 4_1:+39817381 | Msa0547090:CDS |
AACCAAACCTTGATCTGTTT+AGG | 0.396617 | 4_1:-39815016 | None:intergenic |
TCCTTAAAGATCGTTTATCT+TGG | 0.397827 | 4_1:+39816600 | Msa0547090:CDS |
CAAGGCTTCAAACTGTGAAT+AGG | 0.399527 | 4_1:+39815183 | Msa0547090:CDS |
TGGCCAGCCTGGTCCAGATT+CGG | 0.410197 | 4_1:+39816361 | Msa0547090:intron |
TCGAGTGGTGAAGTGGTATA+CGG | 0.413960 | 4_1:+39817375 | Msa0547090:CDS |
TAGATTCAGGGAAATATGTT+AGG | 0.416438 | 4_1:+39814879 | Msa0547090:CDS |
CTACAGGAACTGCTGTTGAT+TGG | 0.418349 | 4_1:+39815928 | Msa0547090:CDS |
GAGCAGCAGCAGTTGGATTA+GGG | 0.419002 | 4_1:-39816983 | None:intergenic |
TACAGGAACTGCTGTTGATT+GGG | 0.419994 | 4_1:+39815929 | Msa0547090:CDS |
TGAATAAAATAATTCTCAAC+AGG | 0.421496 | 4_1:-39819228 | None:intergenic |
GAAATGGAATTGCCTGACTT+TGG | 0.427200 | 4_1:+39819171 | Msa0547090:CDS |
TGTTGTCTTCTCATGGAACT+AGG | 0.427476 | 4_1:-39814956 | None:intergenic |
CAGTGTCCGGTTTGTATTCA+CGG | 0.430832 | 4_1:-39818806 | None:intergenic |
AACCTAAACAGATCAAGGTT+TGG | 0.433904 | 4_1:+39815014 | Msa0547090:CDS |
CAATCAAATAATCATGCCTC+TGG | 0.439280 | 4_1:+39817986 | Msa0547090:CDS |
TTGTAACTTTGCATGAGAAA+TGG | 0.439984 | 4_1:-39814725 | None:intergenic |
GCAGGAACCTATGCCTATCC+AGG | 0.445397 | 4_1:+39817939 | Msa0547090:CDS |
GCAAGTTCCCTCACATTGCT+TGG | 0.446182 | 4_1:+39817704 | Msa0547090:CDS |
AGTGAAGTTGTCTTTGTCCT+AGG | 0.447473 | 4_1:-39814357 | None:intergenic |
AGCAAAGAAAAGAGGCTTCA+AGG | 0.453264 | 4_1:+39815165 | Msa0547090:CDS |
GTTTAAGGGAAAATGAAAAT+GGG | 0.454899 | 4_1:-39814678 | None:intergenic |
AATCAATTGTTGTCTTCTCA+TGG | 0.455291 | 4_1:-39814963 | None:intergenic |
AGCAATGTGAGGGAACTTGC+TGG | 0.458432 | 4_1:-39817701 | None:intergenic |
GTTTGTGAGAGGTCCCTGTC+TGG | 0.459213 | 4_1:+39816948 | Msa0547090:CDS |
CAACGACGCTAGCTCCTGCC+CGG | 0.459822 | 4_1:+39816789 | Msa0547090:CDS |
GGTTCAATGTTGGAAAGAAT+AGG | 0.460052 | 4_1:-39814995 | None:intergenic |
AAGTCTCCTCCGCAATTGAT+AGG | 0.463644 | 4_1:-39815884 | None:intergenic |
CATTGAACCTAAACAGATCA+AGG | 0.465302 | 4_1:+39815009 | Msa0547090:CDS |
TACTGATGCAAGTTGTGATT+CGG | 0.473449 | 4_1:+39815716 | Msa0547090:CDS |
CTTCTCATGGAACTAGGCTT+AGG | 0.473637 | 4_1:-39814950 | None:intergenic |
TGTGAGTGGAATTGAAGAAA+TGG | 0.475079 | 4_1:+39819155 | Msa0547090:CDS |
GTCTTACTTCAAGATTTAAG+TGG | 0.475390 | 4_1:-39817088 | None:intergenic |
TTGAGGTTTGTGTGTTGTGT+GGG | 0.476400 | 4_1:+39814779 | Msa0547090:five_prime_UTR |
ACAAGACTATATTCCTTCCT+AGG | 0.476603 | 4_1:+39814340 | Msa0547090:five_prime_UTR |
TATCTTGGTTTCGCGAGTGT+CGG | 0.476648 | 4_1:+39816615 | Msa0547090:CDS |
CTTAATAAGCATGTTGGTGA+TGG | 0.477301 | 4_1:-39814248 | None:intergenic |
TGTTGATGGAGGAAAATGAT+AGG | 0.483631 | 4_1:+39815228 | Msa0547090:CDS |
TACTGAACAAGTTGAAGCAT+TGG | 0.483862 | 4_1:+39814907 | Msa0547090:CDS |
AAGGGAGCACCGCTCAGAAT+GGG | 0.484393 | 4_1:+39817875 | Msa0547090:CDS |
GAAAACAATATTCCAAAGTC+AGG | 0.484590 | 4_1:-39819183 | None:intergenic |
ATCTAAGAGTCCAGAAATCC+CGG | 0.484814 | 4_1:-39816808 | None:intergenic |
GCATCAGTATTTGCTGCTGA+TGG | 0.488575 | 4_1:-39815702 | None:intergenic |
AAAGAAAGGAATGAAGAAGA+AGG | 0.489195 | 4_1:-39814221 | None:intergenic |
AGCCTGGTCCAGATTCGGTT+GGG | 0.489471 | 4_1:+39816366 | Msa0547090:intron |
GAAATGGAGCTTGAGTTAGA+AGG | 0.492851 | 4_1:-39814419 | None:intergenic |
CGGGCAGGAGCTAGCGTCGT+TGG | 0.492905 | 4_1:-39816788 | None:intergenic |
AGAGATGCTACTAACCCTGC+TGG | 0.494241 | 4_1:+39815765 | Msa0547090:CDS |
ACCTTTGGTGATTCATAAAG+TGG | 0.494265 | 4_1:-39817210 | None:intergenic |
CAGCCTGGTCCAGATTCGGT+TGG | 0.495786 | 4_1:+39816365 | Msa0547090:intron |
CATTACCTTGTGAACCAAGA+TGG | 0.497411 | 4_1:-39814564 | None:intergenic |
CATCTTCTTGAGCAAGAGAA+TGG | 0.498495 | 4_1:-39818224 | None:intergenic |
TGCAATGAACAAGTTGTTGA+TGG | 0.500516 | 4_1:+39815214 | Msa0547090:CDS |
CTGAATGTTCGCAAAACAGC+AGG | 0.501563 | 4_1:-39817411 | None:intergenic |
ATCCCAACCGAATCTGGACC+AGG | 0.504839 | 4_1:-39816368 | None:intergenic |
AAGAACTTTCATTTATCTTG+AGG | 0.505756 | 4_1:+39814762 | Msa0547090:five_prime_UTR |
GGCCAGTGCCAGAACCAGAC+AGG | 0.510237 | 4_1:-39816962 | None:intergenic |
ATATATTAGGCAAATAGCTC+AGG | 0.515140 | 4_1:+39817350 | Msa0547090:CDS |
ACAAGTTGAAGCATTGGAAA+GGG | 0.515957 | 4_1:+39814913 | Msa0547090:CDS |
TAAGGGAGCACCGCTCAGAA+TGG | 0.516788 | 4_1:+39817874 | Msa0547090:CDS |
GAGTTCCTTTCAAAGGCTAC+AGG | 0.517677 | 4_1:+39815912 | Msa0547090:CDS |
CGGACACTGGATTTGACGTC+AGG | 0.521504 | 4_1:+39818820 | Msa0547090:CDS |
CTTGAGGTTTGTGTGTTGTG+TGG | 0.524120 | 4_1:+39814778 | Msa0547090:five_prime_UTR |
GATCTGTTTAGGTTCAATGT+TGG | 0.526382 | 4_1:-39815005 | None:intergenic |
ATAGAAAGTAGTAGTAGTGG+TGG | 0.530086 | 4_1:+39814839 | Msa0547090:CDS |
CATGGCTATGGCTATGGCTG+TGG | 0.534941 | 4_1:+39814808 | Msa0547090:exon |
CATCTTGGTTCACAAGGTAA+TGG | 0.535554 | 4_1:+39814565 | Msa0547090:five_prime_UTR |
CTGTGTATAAATAAGCTCAA+TGG | 0.538636 | 4_1:-39816681 | None:intergenic |
AAGAAACATGGCTATGGCTA+TGG | 0.538767 | 4_1:+39814802 | Msa0547090:exon |
AATCAAATAATCATGCCTCT+GGG | 0.539339 | 4_1:+39817987 | Msa0547090:CDS |
TGGAGCTTGAGTTAGAAGGA+AGG | 0.539812 | 4_1:-39814415 | None:intergenic |
GAACTGATGAGAACGCTGTT+GGG | 0.541622 | 4_1:+39818507 | Msa0547090:CDS |
ATGAGGCCTACAAGATTCAC+TGG | 0.543583 | 4_1:+39817963 | Msa0547090:CDS |
AATAAGCATGTTGGTGATGG+AGG | 0.543677 | 4_1:-39814245 | None:intergenic |
TTTGACAGAGTTCCTTTCAA+AGG | 0.544138 | 4_1:+39815905 | Msa0547090:CDS |
TTGATAAGCATCTAGATTCA+GGG | 0.546019 | 4_1:+39814867 | Msa0547090:CDS |
CGGAAACCAGAAGGCACCAA+TGG | 0.546575 | 4_1:-39818584 | None:intergenic |
AATCTTGTAGGCCTCATCCC+TGG | 0.549464 | 4_1:-39817957 | None:intergenic |
ACAAACTGAGCAGCAGCAGT+TGG | 0.550292 | 4_1:-39816990 | None:intergenic |
CAGTTCCTGTAGCCTTTGAA+AGG | 0.551448 | 4_1:-39815917 | None:intergenic |
AACAAGTTGAAGCATTGGAA+AGG | 0.552407 | 4_1:+39814912 | Msa0547090:CDS |
AGGATGCCGTGAATACAAAC+CGG | 0.553865 | 4_1:+39818800 | Msa0547090:CDS |
AAGTTGTCTTTGTCCTAGGA+AGG | 0.553870 | 4_1:-39814353 | None:intergenic |
ATGGTTCCTCCATTTCCGGC+AGG | 0.554780 | 4_1:-39816662 | None:intergenic |
CTGACGTCAAATCCAGTGTC+CGG | 0.556266 | 4_1:-39818819 | None:intergenic |
TTATGAATCACCAAAGGTGG+TGG | 0.558033 | 4_1:+39817215 | Msa0547090:CDS |
TTTGCAGAACGTTCCTCCTG+CGG | 0.558703 | 4_1:+39817836 | Msa0547090:intron |
AATGGAATCAATAAAAGAGA+AGG | 0.560120 | 4_1:-39814500 | None:intergenic |
ATGGAATCAATAAAAGAGAA+GGG | 0.560824 | 4_1:-39814499 | None:intergenic |
AAGCCATGTTATAATGTGAG+TGG | 0.561828 | 4_1:+39819141 | Msa0547090:intron |
GCGATTTCACAAAGTTGTAG+TGG | 0.563887 | 4_1:+39816395 | Msa0547090:CDS |
TGTAGGCCTCATCCCTGGAT+AGG | 0.565752 | 4_1:-39817952 | None:intergenic |
GTTCCCAGATGATGCTCCAT+TGG | 0.566789 | 4_1:+39818568 | Msa0547090:CDS |
TCCTGCTTTCAGTGATGCAG+CGG | 0.568391 | 4_1:-39817922 | None:intergenic |
GGTCGAATCAAGTAGCCACT+CGG | 0.568475 | 4_1:-39817029 | None:intergenic |
TAATAGTGAACTTACTGCAA+TGG | 0.570234 | 4_1:-39817250 | None:intergenic |
TCCGCTGCATCACTGAAAGC+AGG | 0.573762 | 4_1:+39817921 | Msa0547090:CDS |
TTCACAAAGTTGTAGTGGAG+TGG | 0.575629 | 4_1:+39816400 | Msa0547090:CDS |
GAACACAATTGAACATGAAG+AGG | 0.579319 | 4_1:+39818010 | Msa0547090:CDS |
CCTCATCCCTGGATAGGCAT+AGG | 0.580110 | 4_1:-39817946 | None:intergenic |
CATTCAGCCAAAGATTGAGC+AGG | 0.580203 | 4_1:+39817427 | Msa0547090:CDS |
ATGTTTCCTGCCGGAAATGG+AGG | 0.580359 | 4_1:+39816656 | Msa0547090:CDS |
GCACCAATGGAGCATCATCT+GGG | 0.585521 | 4_1:-39818571 | None:intergenic |
TAGAGAGAAGCAAAGAAAAG+AGG | 0.587959 | 4_1:+39815157 | Msa0547090:CDS |
CATTGAGCTTATTTATACAC+AGG | 0.589032 | 4_1:+39816682 | Msa0547090:CDS |
AGTTCCCTCACATTGCTTGG+AGG | 0.589621 | 4_1:+39817707 | Msa0547090:CDS |
GTAAATGGATTCAGTGATGA+TGG | 0.590567 | 4_1:+39817596 | Msa0547090:CDS |
CGTGAATACAAACCGGACAC+TGG | 0.591523 | 4_1:+39818807 | Msa0547090:CDS |
ATTCGACCATGTGATGGTGG+AGG | 0.591654 | 4_1:+39817044 | Msa0547090:CDS |
AACGACGCTAGCTCCTGCCC+GGG | 0.593425 | 4_1:+39816790 | Msa0547090:CDS |
GGAACTGATGAGAACGCTGT+TGG | 0.594775 | 4_1:+39818506 | Msa0547090:CDS |
AGGTTTGGTTCCAAAATCGA+AGG | 0.597184 | 4_1:+39815029 | Msa0547090:CDS |
AGAGTCCAGAAATCCCGGGC+AGG | 0.597452 | 4_1:-39816803 | None:intergenic |
TGGTCTATACTGAACTGTGA+TGG | 0.602711 | 4_1:+39817620 | Msa0547090:CDS |
TTGCAGACTCCTATCAATTG+CGG | 0.602778 | 4_1:+39815875 | Msa0547090:intron |
CATATAGAAAGTAGTAGTAG+TGG | 0.603914 | 4_1:+39814836 | Msa0547090:CDS |
GAGATGCTACTAACCCTGCT+GGG | 0.605907 | 4_1:+39815766 | Msa0547090:CDS |
AGAAAGCGAACCAAAACCGC+AGG | 0.606717 | 4_1:-39817852 | None:intergenic |
GTCGAATCAAGTAGCCACTC+GGG | 0.608954 | 4_1:-39817028 | None:intergenic |
AGTACTTCTGGCACACTCCA+CGG | 0.612200 | 4_1:-39817183 | None:intergenic |
GGGATGATGCGGAAACCAGA+AGG | 0.615520 | 4_1:-39818593 | None:intergenic |
ATCAAATAATCATGCCTCTG+GGG | 0.615769 | 4_1:+39817988 | Msa0547090:CDS |
TCAGGAATCGAGTGGTGAAG+TGG | 0.617819 | 4_1:+39817368 | Msa0547090:CDS |
GCCAGTGCCAGAACCAGACA+GGG | 0.617845 | 4_1:-39816961 | None:intergenic |
TTGAATCTAATGGGATGATG+CGG | 0.619863 | 4_1:-39818604 | None:intergenic |
GCATCTCTCTTAGAATTCTG+AGG | 0.619916 | 4_1:-39815750 | None:intergenic |
ATTCCACTCACATTATAACA+TGG | 0.620105 | 4_1:-39819144 | None:intergenic |
AAGCGAACCAAAACCGCAGG+AGG | 0.620397 | 4_1:-39817849 | None:intergenic |
AGCTCAGATATCAAGAAACA+TGG | 0.621080 | 4_1:-39814161 | None:intergenic |
GAATTCCTCCAAGCAATGTG+AGG | 0.621910 | 4_1:-39817712 | None:intergenic |
CAGGAACCTATGCCTATCCA+GGG | 0.626828 | 4_1:+39817940 | Msa0547090:CDS |
CCTATGCCTATCCAGGGATG+AGG | 0.627418 | 4_1:+39817946 | Msa0547090:CDS |
ATGGATTCAGTGATGATGGT+TGG | 0.628950 | 4_1:+39817600 | Msa0547090:CDS |
TACACTACAACTTTGGACAA+TGG | 0.630488 | 4_1:+39816830 | Msa0547090:CDS |
CAGACTCCTATCAATTGCGG+AGG | 0.631681 | 4_1:+39815878 | Msa0547090:intron |
TGTTAGTTTAGAACCTACAA+AGG | 0.632221 | 4_1:+39816442 | Msa0547090:CDS |
TACTTGATTCGACCATGTGA+TGG | 0.633229 | 4_1:+39817038 | Msa0547090:CDS |
TGTGGGAAGAAACATGGCTA+TGG | 0.633966 | 4_1:+39814796 | Msa0547090:exon |
TTGGTGATGGAGGAAAAGAA+AGG | 0.634397 | 4_1:-39814235 | None:intergenic |
AATTCCTCCAAGCAATGTGA+GGG | 0.636010 | 4_1:-39817711 | None:intergenic |
ACTGAACTGTGATGGTGCTG+AGG | 0.636112 | 4_1:+39817628 | Msa0547090:CDS |
GGAGTGGCAGCTCGAGCTTG+CGG | 0.638597 | 4_1:+39816416 | Msa0547090:CDS |
TTTGGACAATGGCAGTCTTG+TGG | 0.639500 | 4_1:+39816841 | Msa0547090:CDS |
TCTAAGAGTCCAGAAATCCC+GGG | 0.642124 | 4_1:-39816807 | None:intergenic |
GATTTAAGTGGTCTACAATG+TGG | 0.642422 | 4_1:-39817076 | None:intergenic |
TGTTCAATTGTGTTCCCCAG+AGG | 0.648149 | 4_1:-39818002 | None:intergenic |
ATTGAACCTCCACCATCACA+TGG | 0.648754 | 4_1:-39817050 | None:intergenic |
TTGATTCGACCATGTGATGG+TGG | 0.653641 | 4_1:+39817041 | Msa0547090:CDS |
ACTTTATGAATCACCAAAGG+TGG | 0.655976 | 4_1:+39817212 | Msa0547090:CDS |
GAATCAATAAAAGAGAAGGG+TGG | 0.666901 | 4_1:-39814496 | None:intergenic |
GATATGAAGAAATCTAGACT+TGG | 0.667212 | 4_1:+39819354 | Msa0547090:CDS |
GTGTTGTGTGGGAAGAAACA+TGG | 0.667868 | 4_1:+39814790 | Msa0547090:exon |
ACCACTTTATGAATCACCAA+AGG | 0.678609 | 4_1:+39817209 | Msa0547090:CDS |
CAAATAGCTCAGGAATCGAG+TGG | 0.680372 | 4_1:+39817360 | Msa0547090:CDS |
AGAGCTGAAATGCTCCCGAG+TGG | 0.713532 | 4_1:+39817014 | Msa0547090:CDS |
AATGAACAAGTTGTTGATGG+AGG | 0.713928 | 4_1:+39815217 | Msa0547090:CDS |
TGAAATCAGCCCATTCTGAG+CGG | 0.726689 | 4_1:-39817884 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATATTGTTATATGTTTTAA+AGG | - | chr4_1:39814528-39814547 | None:intergenic | 10.0% |
!! | NNNNNNAAATTAAATGAAGA+TGG | + | chr4_1:39818988-39819007 | Msa0547090:intron | 10.0% |
!!! | AAAATGTACAAAAACATTTT+CGG | - | chr4_1:39814114-39814133 | None:intergenic | 15.0% |
!!! | TTATATGTTTTAAAGGTTAA+TGG | - | chr4_1:39814521-39814540 | None:intergenic | 15.0% |
!!! | ATTGGTTTATAAAATTGATT+CGG | - | chr4_1:39815576-39815595 | None:intergenic | 15.0% |
!!! | AAATTTGATTTCAAATGAAT+TGG | - | chr4_1:39815594-39815613 | None:intergenic | 15.0% |
!!! | ATATTGATGGATATTATATT+TGG | + | chr4_1:39815661-39815680 | Msa0547090:intron | 15.0% |
!! | ATAATTTAGTAGAAAAAACT+TGG | - | chr4_1:39816317-39816336 | None:intergenic | 15.0% |
!!! | TGATTTTTATATCAGTTTTT+TGG | + | chr4_1:39817530-39817549 | Msa0547090:intron | 15.0% |
!! | TCAATAATTTATCAATAGTA+AGG | - | chr4_1:39818288-39818307 | None:intergenic | 15.0% |
!! | TAAACAAATATGATCATTAT+AGG | + | chr4_1:39818437-39818456 | Msa0547090:intron | 15.0% |
!! | ATAGAATATGACAAGTTTAA+GGG | - | chr4_1:39814695-39814714 | None:intergenic | 20.0% |
!!! | TTAGTTTTGTCTTGTTTTTT+TGG | + | chr4_1:39815114-39815133 | Msa0547090:intron | 20.0% |
!! | ATTGAATTCTAGCATTAAAT+TGG | - | chr4_1:39815434-39815453 | None:intergenic | 20.0% |
!! | AATATAGTAATCAATTGTAG+AGG | - | chr4_1:39815464-39815483 | None:intergenic | 20.0% |
!!! | TTGGTTTATAAAATTGATTC+GGG | - | chr4_1:39815575-39815594 | None:intergenic | 20.0% |
!! | TACACAATAGAAAAAGAATT+AGG | - | chr4_1:39815850-39815869 | None:intergenic | 20.0% |
!!! | ATATACTTTAGAGACTTAAT+TGG | - | chr4_1:39816048-39816067 | None:intergenic | 20.0% |
!!! | TTTTAGTCTTTGTCATTAAA+AGG | + | chr4_1:39816079-39816098 | Msa0547090:intron | 20.0% |
!! | TACTTAAAGAACTAAAATGA+AGG | + | chr4_1:39816130-39816149 | Msa0547090:intron | 20.0% |
!! | TTAAAGACAATTGAAATTAG+TGG | + | chr4_1:39816225-39816244 | Msa0547090:intron | 20.0% |
!!! | AATGAAAATTTAACTTCATC+AGG | - | chr4_1:39818174-39818193 | None:intergenic | 20.0% |
!! | TATCGGTAATATATTATCTT+CGG | + | chr4_1:39818352-39818371 | Msa0547090:intron | 20.0% |
!!! | ATGTTACTATTTTCTGTTTT+AGG | + | chr4_1:39818768-39818787 | Msa0547090:intron | 20.0% |
!!! | TGTTACTATTTTCTGTTTTA+GGG | + | chr4_1:39818769-39818788 | Msa0547090:intron | 20.0% |
!! | TGAATAAAATAATTCTCAAC+AGG | - | chr4_1:39819231-39819250 | None:intergenic | 20.0% |
! | AAAAACCTTAATAAGCATGT+TGG | - | chr4_1:39814257-39814276 | None:intergenic | 25.0% |
! | CAAGATAAGTTTGAATGAAA+TGG | - | chr4_1:39814438-39814457 | None:intergenic | 25.0% |
! | ATGGAATCAATAAAAGAGAA+GGG | - | chr4_1:39814502-39814521 | None:intergenic | 25.0% |
! | AATGGAATCAATAAAAGAGA+AGG | - | chr4_1:39814503-39814522 | None:intergenic | 25.0% |
! | AAGAAGAAAAAAAACCATCT+TGG | + | chr4_1:39814550-39814569 | Msa0547090:five_prime_UTR | 25.0% |
! | AAAGTTGAAGTGAAAAAAGA+AGG | + | chr4_1:39814602-39814621 | Msa0547090:five_prime_UTR | 25.0% |
! | AGAAAATGAACAAGAAAGTT+TGG | - | chr4_1:39814644-39814663 | None:intergenic | 25.0% |
! | GTTTAAGGGAAAATGAAAAT+GGG | - | chr4_1:39814681-39814700 | None:intergenic | 25.0% |
! | AGTTTAAGGGAAAATGAAAA+TGG | - | chr4_1:39814682-39814701 | None:intergenic | 25.0% |
! | GATAGAATATGACAAGTTTA+AGG | - | chr4_1:39814696-39814715 | None:intergenic | 25.0% |
! | TCAAGATAAATGAAAGTTCT+TGG | - | chr4_1:39814763-39814782 | None:intergenic | 25.0% |
! | AAGAACTTTCATTTATCTTG+AGG | + | chr4_1:39814762-39814781 | Msa0547090:five_prime_UTR | 25.0% |
!! | TCATGTCATAATTCTACTTT+TGG | + | chr4_1:39815336-39815355 | Msa0547090:intron | 25.0% |
!!! | AGAATTGATTTTGACATGTT+TGG | + | chr4_1:39815386-39815405 | Msa0547090:intron | 25.0% |
!!! | TTAGTGCATTTTTGGTATTT+TGG | - | chr4_1:39815623-39815642 | None:intergenic | 25.0% |
!!! | GATTTTTTTTTCTGTCTTGA+AGG | + | chr4_1:39815821-39815840 | Msa0547090:intron | 25.0% |
! | TCTTTGTCATTAAAAGGTTA+GGG | + | chr4_1:39816085-39816104 | Msa0547090:intron | 25.0% |
! | GAAGGATTTGATATTCTTTA+AGG | + | chr4_1:39816148-39816167 | Msa0547090:intron | 25.0% |
!!! | GTATACATTTGTTATTCTCT+TGG | + | chr4_1:39816341-39816360 | Msa0547090:intron | 25.0% |
!! | TTACATCTTATTTGGAAGTA+TGG | - | chr4_1:39816474-39816493 | None:intergenic | 25.0% |
!!! | AGTTTGTTGACTAATGTTAT+TGG | + | chr4_1:39817304-39817323 | Msa0547090:intron | 25.0% |
! | TAAAAACTAACATCCCAAAA+CGG | - | chr4_1:39817806-39817825 | None:intergenic | 25.0% |
! | TATGTAAGAAGAGGTTAATA+GGG | - | chr4_1:39818318-39818337 | None:intergenic | 25.0% |
! | TTATGTAAGAAGAGGTTAAT+AGG | - | chr4_1:39818319-39818338 | None:intergenic | 25.0% |
! | TAATATATTACCGATAGATC+TGG | - | chr4_1:39818348-39818367 | None:intergenic | 25.0% |
! | TATATTATCTTCGGTACAAA+TGG | + | chr4_1:39818361-39818380 | Msa0547090:intron | 25.0% |
! | CATACAAGAAATCATTTCAT+CGG | - | chr4_1:39818400-39818419 | None:intergenic | 25.0% |
!! | TGATTTCTTGTATGTAGTTT+TGG | + | chr4_1:39818406-39818425 | Msa0547090:intron | 25.0% |
!!! | TAACTGGTTTTGAATCTAAT+GGG | - | chr4_1:39818616-39818635 | None:intergenic | 25.0% |
!!! | TTAACTGGTTTTGAATCTAA+TGG | - | chr4_1:39818617-39818636 | None:intergenic | 25.0% |
!! | ACACTTAATTTGAGTAAATC+AGG | - | chr4_1:39818691-39818710 | None:intergenic | 25.0% |
! | AAATTAAATGAAGATGGTTC+TGG | + | chr4_1:39818994-39819013 | Msa0547090:intron | 25.0% |
! | AGCATTCATGAAGAAAATTA+AGG | + | chr4_1:39819086-39819105 | Msa0547090:intron | 25.0% |
! | GCATTCATGAAGAAAATTAA+GGG | + | chr4_1:39819087-39819106 | Msa0547090:intron | 25.0% |
!!! | ACATTATAACATGGCTTTAA+AGG | - | chr4_1:39819138-39819157 | None:intergenic | 25.0% |
!!! | TTTGGAATATTGTTTTCAGA+TGG | + | chr4_1:39819189-39819208 | Msa0547090:CDS | 25.0% |
!!! | TTGTTTGTTTGGCTATTTTA+GGG | + | chr4_1:39819268-39819287 | Msa0547090:CDS | 25.0% |
!! | ATTATTGAAAGTGCAGATTT+AGG | - | chr4_1:39819297-39819316 | None:intergenic | 25.0% |
! | AAATCTGCACTTTCAATAAT+TGG | + | chr4_1:39819297-39819316 | Msa0547090:CDS | 25.0% |
AAAGAAAGGAATGAAGAAGA+AGG | - | chr4_1:39814224-39814243 | None:intergenic | 30.0% | |
CAGTATCAATCAAGAGAAAA+AGG | - | chr4_1:39814280-39814299 | None:intergenic | 30.0% | |
!!! | TGTCTTTGTTGCTGTTTTTT+TGG | - | chr4_1:39814323-39814342 | None:intergenic | 30.0% |
TTGTAACTTTGCATGAGAAA+TGG | - | chr4_1:39814728-39814747 | None:intergenic | 30.0% | |
CATATAGAAAGTAGTAGTAG+TGG | + | chr4_1:39814836-39814855 | Msa0547090:CDS | 30.0% | |
ATTGATAAGCATCTAGATTC+AGG | + | chr4_1:39814866-39814885 | Msa0547090:CDS | 30.0% | |
TTGATAAGCATCTAGATTCA+GGG | + | chr4_1:39814867-39814886 | Msa0547090:CDS | 30.0% | |
TAGATTCAGGGAAATATGTT+AGG | + | chr4_1:39814879-39814898 | Msa0547090:CDS | 30.0% | |
AATCAATTGTTGTCTTCTCA+TGG | - | chr4_1:39814966-39814985 | None:intergenic | 30.0% | |
! | GTTTTCAATACCTTCGATTT+TGG | - | chr4_1:39815042-39815061 | None:intergenic | 30.0% |
!! | ATCGAAGGTATTGAAAACTT+TGG | + | chr4_1:39815044-39815063 | Msa0547090:intron | 30.0% |
!!! | TTTGGTGTTTAATGTTTTGC+AGG | + | chr4_1:39815132-39815151 | Msa0547090:intron | 30.0% |
!! | TGTCATAATTCTACTTTTGG+AGG | + | chr4_1:39815339-39815358 | Msa0547090:intron | 30.0% |
GTAATCAATTGTAGAGGAAA+AGG | - | chr4_1:39815458-39815477 | None:intergenic | 30.0% | |
TCAATTCACTTTGACATGAA+CGG | + | chr4_1:39815501-39815520 | Msa0547090:intron | 30.0% | |
ACCAAAAATGCACTAAGTTA+AGG | + | chr4_1:39815627-39815646 | Msa0547090:intron | 30.0% | |
ATCCATCAATATCAATTCCA+AGG | - | chr4_1:39815653-39815672 | None:intergenic | 30.0% | |
TCTTCGTACTAAATTTAGCA+AGG | - | chr4_1:39815991-39816010 | None:intergenic | 30.0% | |
! | TTGGAGAGAGTGATATTTTA+GGG | - | chr4_1:39816029-39816048 | None:intergenic | 30.0% |
! | ATTGGAGAGAGTGATATTTT+AGG | - | chr4_1:39816030-39816049 | None:intergenic | 30.0% |
GTCTTTGTCATTAAAAGGTT+AGG | + | chr4_1:39816084-39816103 | Msa0547090:intron | 30.0% | |
ACAATTGAAATTAGTGGTCA+TGG | + | chr4_1:39816231-39816250 | Msa0547090:intron | 30.0% | |
! | TGTTAGTTTAGAACCTACAA+AGG | + | chr4_1:39816442-39816461 | Msa0547090:CDS | 30.0% |
! | CCACACTTTTACATCTTATT+TGG | - | chr4_1:39816482-39816501 | None:intergenic | 30.0% |
CCAAATAAGATGTAAAAGTG+TGG | + | chr4_1:39816479-39816498 | Msa0547090:intron | 30.0% | |
!! | GCAATTTTTCTGTCATTTGT+TGG | + | chr4_1:39816505-39816524 | Msa0547090:intron | 30.0% |
TCCTTAAAGATCGTTTATCT+TGG | + | chr4_1:39816600-39816619 | Msa0547090:CDS | 30.0% | |
ACCAAGATAAACGATCTTTA+AGG | - | chr4_1:39816604-39816623 | None:intergenic | 30.0% | |
GAAACATTGTGAAAACTTCT+AGG | - | chr4_1:39816643-39816662 | None:intergenic | 30.0% | |
CTGTGTATAAATAAGCTCAA+TGG | - | chr4_1:39816684-39816703 | None:intergenic | 30.0% | |
CATTGAGCTTATTTATACAC+AGG | + | chr4_1:39816682-39816701 | Msa0547090:CDS | 30.0% | |
TCTTAGATACACTACAACTT+TGG | + | chr4_1:39816823-39816842 | Msa0547090:CDS | 30.0% | |
! | TGGTGAGTATATTTTTCATC+TGG | + | chr4_1:39816861-39816880 | Msa0547090:intron | 30.0% |
! | TATATTTTTCATCTGGTGCA+TGG | + | chr4_1:39816868-39816887 | Msa0547090:intron | 30.0% |
GTCTTACTTCAAGATTTAAG+TGG | - | chr4_1:39817091-39817110 | None:intergenic | 30.0% | |
TAATAGTGAACTTACTGCAA+TGG | - | chr4_1:39817253-39817272 | None:intergenic | 30.0% | |
ATATATTAGGCAAATAGCTC+AGG | + | chr4_1:39817350-39817369 | Msa0547090:CDS | 30.0% | |
AGGAAACAAATCATTTCATG+TGG | - | chr4_1:39817456-39817475 | None:intergenic | 30.0% | |
!! | GAAATGATTTGTTTCCTTGA+AGG | + | chr4_1:39817459-39817478 | Msa0547090:intron | 30.0% |
AGAAGAGCTACTTAAATTCT+TGG | - | chr4_1:39817678-39817697 | None:intergenic | 30.0% | |
! | ATTTTCAACAGTTACCGTTT+TGG | + | chr4_1:39817789-39817808 | Msa0547090:intron | 30.0% |
! | TTTTCAACAGTTACCGTTTT+GGG | + | chr4_1:39817790-39817809 | Msa0547090:intron | 30.0% |
AATCAAATAATCATGCCTCT+GGG | + | chr4_1:39817987-39818006 | Msa0547090:CDS | 30.0% | |
TCAAAATGTCTTTAGTGTTG+TGG | + | chr4_1:39818067-39818086 | Msa0547090:intron | 30.0% | |
!! | AAGAAGATGCTTTTGTTTCT+AGG | + | chr4_1:39818238-39818257 | Msa0547090:CDS | 30.0% |
!!! | AGAAGATGCTTTTGTTTCTA+GGG | + | chr4_1:39818239-39818258 | Msa0547090:CDS | 30.0% |
ATCATTATAGGTATGTACTG+AGG | + | chr4_1:39818449-39818468 | Msa0547090:intron | 30.0% | |
! | ATCTTTTTGCAGATATGTAG+TGG | + | chr4_1:39818485-39818504 | Msa0547090:intron | 30.0% |
CAATAGAGAGGAAAAAAGAA+GGG | - | chr4_1:39818648-39818667 | None:intergenic | 30.0% | |
TCAATAGAGAGGAAAAAAGA+AGG | - | chr4_1:39818649-39818668 | None:intergenic | 30.0% | |
GAAAAATTAGCTCAATAGAG+AGG | - | chr4_1:39818660-39818679 | None:intergenic | 30.0% | |
TCAAATTAAGTGTCTTCCTA+TGG | + | chr4_1:39818698-39818717 | Msa0547090:intron | 30.0% | |
TCTTGAATAATCTCATAAGC+AGG | - | chr4_1:39819066-39819085 | None:intergenic | 30.0% | |
ATTCCACTCACATTATAACA+TGG | - | chr4_1:39819147-39819166 | None:intergenic | 30.0% | |
GAAAACAATATTCCAAAGTC+AGG | - | chr4_1:39819186-39819205 | None:intergenic | 30.0% | |
! | ATCTGATGATGTTGTTTGTT+TGG | + | chr4_1:39819257-39819276 | Msa0547090:CDS | 30.0% |
!! | GTTGTTTGTTTGGCTATTTT+AGG | + | chr4_1:39819267-39819286 | Msa0547090:CDS | 30.0% |
GATATGAAGAAATCTAGACT+TGG | + | chr4_1:39819354-39819373 | Msa0547090:CDS | 30.0% | |
TAAACTTCATTGCACTTCAT+TGG | - | chr4_1:39819387-39819406 | None:intergenic | 30.0% | |
AGCTCAGATATCAAGAAACA+TGG | - | chr4_1:39814164-39814183 | None:intergenic | 35.0% | |
! | CTTAATAAGCATGTTGGTGA+TGG | - | chr4_1:39814251-39814270 | None:intergenic | 35.0% |
CATCACCAACATGCTTATTA+AGG | + | chr4_1:39814249-39814268 | Msa0547090:five_prime_UTR | 35.0% | |
ACAAGACTATATTCCTTCCT+AGG | + | chr4_1:39814340-39814359 | Msa0547090:five_prime_UTR | 35.0% | |
GAATCAATAAAAGAGAAGGG+TGG | - | chr4_1:39814499-39814518 | None:intergenic | 35.0% | |
AAAAACCATCTTGGTTCACA+AGG | + | chr4_1:39814559-39814578 | Msa0547090:five_prime_UTR | 35.0% | |
ATAGAAAGTAGTAGTAGTGG+TGG | + | chr4_1:39814839-39814858 | Msa0547090:CDS | 35.0% | |
! | TACTGAACAAGTTGAAGCAT+TGG | + | chr4_1:39814907-39814926 | Msa0547090:CDS | 35.0% |
!! | AACAAGTTGAAGCATTGGAA+AGG | + | chr4_1:39814912-39814931 | Msa0547090:CDS | 35.0% |
!! | ACAAGTTGAAGCATTGGAAA+GGG | + | chr4_1:39814913-39814932 | Msa0547090:CDS | 35.0% |
GGTTCAATGTTGGAAAGAAT+AGG | - | chr4_1:39814998-39815017 | None:intergenic | 35.0% | |
! | GATCTGTTTAGGTTCAATGT+TGG | - | chr4_1:39815008-39815027 | None:intergenic | 35.0% |
CATTGAACCTAAACAGATCA+AGG | + | chr4_1:39815009-39815028 | Msa0547090:CDS | 35.0% | |
AACCTAAACAGATCAAGGTT+TGG | + | chr4_1:39815014-39815033 | Msa0547090:CDS | 35.0% | |
AACCAAACCTTGATCTGTTT+AGG | - | chr4_1:39815019-39815038 | None:intergenic | 35.0% | |
TCTACAAGTTTGAGCTTCAT+TGG | + | chr4_1:39815069-39815088 | Msa0547090:intron | 35.0% | |
TAGAGAGAAGCAAAGAAAAG+AGG | + | chr4_1:39815157-39815176 | Msa0547090:CDS | 35.0% | |
TGCAATGAACAAGTTGTTGA+TGG | + | chr4_1:39815214-39815233 | Msa0547090:CDS | 35.0% | |
! | AATGAACAAGTTGTTGATGG+AGG | + | chr4_1:39815217-39815236 | Msa0547090:CDS | 35.0% |
! | TGTTGATGGAGGAAAATGAT+AGG | + | chr4_1:39815228-39815247 | Msa0547090:CDS | 35.0% |
! | TGTGTGAGAATGGATTTATG+AGG | + | chr4_1:39815276-39815295 | Msa0547090:intron | 35.0% |
TTGCATACTGTAAGTGTATG+AGG | + | chr4_1:39815305-39815324 | Msa0547090:intron | 35.0% | |
!! | CATAATTCTACTTTTGGAGG+AGG | + | chr4_1:39815342-39815361 | Msa0547090:intron | 35.0% |
! | GCCTTAACTTAGTGCATTTT+TGG | - | chr4_1:39815631-39815650 | None:intergenic | 35.0% |
TACTGATGCAAGTTGTGATT+CGG | + | chr4_1:39815716-39815735 | Msa0547090:CDS | 35.0% | |
TTTGACAGAGTTCCTTTCAA+AGG | + | chr4_1:39815905-39815924 | Msa0547090:CDS | 35.0% | |
! | AATTAGTGGTCATGGCTTTT+AGG | + | chr4_1:39816239-39816258 | Msa0547090:intron | 35.0% |
!! | CTATGCCGATTTGAAAATGA+AGG | + | chr4_1:39816291-39816310 | Msa0547090:intron | 35.0% |
!! | CTTGGCCTTCATTTTCAAAT+CGG | - | chr4_1:39816299-39816318 | None:intergenic | 35.0% |
AGTATGGAATCTACCTTTGT+AGG | - | chr4_1:39816458-39816477 | None:intergenic | 35.0% | |
TATGTCTGTAGCAAATCTGA+AGG | - | chr4_1:39816764-39816783 | None:intergenic | 35.0% | |
TACACTACAACTTTGGACAA+TGG | + | chr4_1:39816830-39816849 | Msa0547090:CDS | 35.0% | |
ATCTGGTGCATGGTAATAAA+AGG | + | chr4_1:39816878-39816897 | Msa0547090:intron | 35.0% | |
!! | GCATTTGATTCCACTTTTGA+AGG | + | chr4_1:39816926-39816945 | Msa0547090:intron | 35.0% |
GATTTAAGTGGTCTACAATG+TGG | - | chr4_1:39817079-39817098 | None:intergenic | 35.0% | |
ACCACTTTATGAATCACCAA+AGG | + | chr4_1:39817209-39817228 | Msa0547090:CDS | 35.0% | |
! | ACCTTTGGTGATTCATAAAG+TGG | - | chr4_1:39817213-39817232 | None:intergenic | 35.0% |
ACTTTATGAATCACCAAAGG+TGG | + | chr4_1:39817212-39817231 | Msa0547090:CDS | 35.0% | |
!! | TTATTGGTGCCTTTTGTGAT+AGG | + | chr4_1:39817320-39817339 | Msa0547090:intron | 35.0% |
GATAGGCACTTCGATATATT+AGG | + | chr4_1:39817337-39817356 | Msa0547090:intron | 35.0% | |
CAATCAAATAATCATGCCTC+TGG | + | chr4_1:39817986-39818005 | Msa0547090:CDS | 35.0% | |
ATCAAATAATCATGCCTCTG+GGG | + | chr4_1:39817988-39818007 | Msa0547090:CDS | 35.0% | |
GAACACAATTGAACATGAAG+AGG | + | chr4_1:39818010-39818029 | Msa0547090:CDS | 35.0% | |
CACTCTACATAACATGCTAA+TGG | - | chr4_1:39818096-39818115 | None:intergenic | 35.0% | |
TGCAGATGCTTGAAGTTATT+AGG | + | chr4_1:39818193-39818212 | Msa0547090:intron | 35.0% | |
CTTGAAGTTATTAGGCTTGA+AGG | + | chr4_1:39818201-39818220 | Msa0547090:CDS | 35.0% | |
TAGGGATATTCATCTGTTAC+AGG | + | chr4_1:39818257-39818276 | Msa0547090:CDS | 35.0% | |
TCTGGGAACATTTCATCAAT+TGG | - | chr4_1:39818557-39818576 | None:intergenic | 35.0% | |
TTGAATCTAATGGGATGATG+CGG | - | chr4_1:39818607-39818626 | None:intergenic | 35.0% | |
AGAAGGGAACAAAACTTAAC+TGG | - | chr4_1:39818632-39818651 | None:intergenic | 35.0% | |
AATTAAGTGTCTTCCTATGG+CGG | + | chr4_1:39818701-39818720 | Msa0547090:intron | 35.0% | |
!!! | TCTGTTTTAGGGTGATAAGA+AGG | + | chr4_1:39818780-39818799 | Msa0547090:intron | 35.0% |
!! | TTAAATGAAGATGGTTCTGG+TGG | + | chr4_1:39818997-39819016 | Msa0547090:intron | 35.0% |
! | GGTGGTACAATAATTGATTC+TGG | + | chr4_1:39819015-39819034 | Msa0547090:intron | 35.0% |
AAGCCATGTTATAATGTGAG+TGG | + | chr4_1:39819141-39819160 | Msa0547090:intron | 35.0% | |
TGTGAGTGGAATTGAAGAAA+TGG | + | chr4_1:39819155-39819174 | Msa0547090:CDS | 35.0% | |
!! | TTGGTGATGGAGGAAAAGAA+AGG | - | chr4_1:39814238-39814257 | None:intergenic | 40.0% |
!! | AATAAGCATGTTGGTGATGG+AGG | - | chr4_1:39814248-39814267 | None:intergenic | 40.0% |
AAGTTGTCTTTGTCCTAGGA+AGG | - | chr4_1:39814356-39814375 | None:intergenic | 40.0% | |
AGTGAAGTTGTCTTTGTCCT+AGG | - | chr4_1:39814360-39814379 | None:intergenic | 40.0% | |
GAAATGGAGCTTGAGTTAGA+AGG | - | chr4_1:39814422-39814441 | None:intergenic | 40.0% | |
CATTACCTTGTGAACCAAGA+TGG | - | chr4_1:39814567-39814586 | None:intergenic | 40.0% | |
CATCTTGGTTCACAAGGTAA+TGG | + | chr4_1:39814565-39814584 | Msa0547090:five_prime_UTR | 40.0% | |
TTGAGGTTTGTGTGTTGTGT+GGG | + | chr4_1:39814779-39814798 | Msa0547090:five_prime_UTR | 40.0% | |
AAGAAACATGGCTATGGCTA+TGG | + | chr4_1:39814802-39814821 | Msa0547090:exon | 40.0% | |
TGTTGTCTTCTCATGGAACT+AGG | - | chr4_1:39814959-39814978 | None:intergenic | 40.0% | |
! | AGGTTTGGTTCCAAAATCGA+AGG | + | chr4_1:39815029-39815048 | Msa0547090:CDS | 40.0% |
AGCAAAGAAAAGAGGCTTCA+AGG | + | chr4_1:39815165-39815184 | Msa0547090:CDS | 40.0% | |
CAAGGCTTCAAACTGTGAAT+AGG | + | chr4_1:39815183-39815202 | Msa0547090:CDS | 40.0% | |
!! | AATTCTACTTTTGGAGGAGG+CGG | + | chr4_1:39815345-39815364 | Msa0547090:intron | 40.0% |
AATGCACTAAGTTAAGGCCT+TGG | + | chr4_1:39815633-39815652 | Msa0547090:intron | 40.0% | |
GGCCTTGGAATTGATATTGA+TGG | + | chr4_1:39815648-39815667 | Msa0547090:intron | 40.0% | |
GCATCTCTCTTAGAATTCTG+AGG | - | chr4_1:39815753-39815772 | None:intergenic | 40.0% | |
! | AACCCTGCTGGGTAATTTTT+AGG | + | chr4_1:39815777-39815796 | Msa0547090:intron | 40.0% |
AGCCTAAAAATTACCCAGCA+GGG | - | chr4_1:39815782-39815801 | None:intergenic | 40.0% | |
AAGCCTAAAAATTACCCAGC+AGG | - | chr4_1:39815783-39815802 | None:intergenic | 40.0% | |
TTGCAGACTCCTATCAATTG+CGG | + | chr4_1:39815875-39815894 | Msa0547090:intron | 40.0% | |
! | TACAGGAACTGCTGTTGATT+GGG | + | chr4_1:39815929-39815948 | Msa0547090:CDS | 40.0% |
AAATAAGAGACCTTCATCCC+AGG | - | chr4_1:39815963-39815982 | None:intergenic | 40.0% | |
AAGGTTAGGGACTAACATGA+CGG | + | chr4_1:39816098-39816117 | Msa0547090:intron | 40.0% | |
GCGATTTCACAAAGTTGTAG+TGG | + | chr4_1:39816395-39816414 | Msa0547090:CDS | 40.0% | |
! | TTCACAAAGTTGTAGTGGAG+TGG | + | chr4_1:39816400-39816419 | Msa0547090:CDS | 40.0% |
! | GTTTTCACAATGTTTCCTGC+CGG | + | chr4_1:39816647-39816666 | Msa0547090:CDS | 40.0% |
CAAATCTGAAGGTCACTCAA+AGG | - | chr4_1:39816753-39816772 | None:intergenic | 40.0% | |
ATCTAAGAGTCCAGAAATCC+CGG | - | chr4_1:39816811-39816830 | None:intergenic | 40.0% | |
CTCTCACAAACCTTCAAAAG+TGG | - | chr4_1:39816939-39816958 | None:intergenic | 40.0% | |
!! | CACTTTTGAAGGTTTGTGAG+AGG | + | chr4_1:39816937-39816956 | Msa0547090:intron | 40.0% |
! | TACTTGATTCGACCATGTGA+TGG | + | chr4_1:39817038-39817057 | Msa0547090:CDS | 40.0% |
TTATTCTTGTCTTCTAGCCG+TGG | + | chr4_1:39817166-39817185 | Msa0547090:intron | 40.0% | |
TAAAGTGGTCGTAGTACTTC+TGG | - | chr4_1:39817198-39817217 | None:intergenic | 40.0% | |
TTATGAATCACCAAAGGTGG+TGG | + | chr4_1:39817215-39817234 | Msa0547090:CDS | 40.0% | |
!!! | ATTTTTTGAGCCACCACCTT+TGG | - | chr4_1:39817228-39817247 | None:intergenic | 40.0% |
! | ATCGAAGTGCCTATCACAAA+AGG | - | chr4_1:39817332-39817351 | None:intergenic | 40.0% |
TCCTTGAAGGTCATATCTGT+CGG | + | chr4_1:39817472-39817491 | Msa0547090:intron | 40.0% | |
CTGATGTATTACATCTGCAG+AGG | + | chr4_1:39817560-39817579 | Msa0547090:intron | 40.0% | |
TGGTCTATACTGAACTGTGA+TGG | + | chr4_1:39817620-39817639 | Msa0547090:CDS | 40.0% | |
AATTCCTCCAAGCAATGTGA+GGG | - | chr4_1:39817714-39817733 | None:intergenic | 40.0% | |
TGAGTCTTGAGTCAATGTCA+CGG | + | chr4_1:39817765-39817784 | Msa0547090:intron | 40.0% | |
!!! | GGTTTTGGTTCGCTTTCTAA+GGG | + | chr4_1:39817857-39817876 | Msa0547090:CDS | 40.0% |
TGATTGCCAGTGAATCTTGT+AGG | - | chr4_1:39817972-39817991 | None:intergenic | 40.0% | |
CATCTTCTTGAGCAAGAGAA+TGG | - | chr4_1:39818227-39818246 | None:intergenic | 40.0% | |
ATAAGCTGAGCCAGATCTAT+CGG | + | chr4_1:39818335-39818354 | Msa0547090:intron | 40.0% | |
GAAATGGAATTGCCTGACTT+TGG | + | chr4_1:39819171-39819190 | Msa0547090:CDS | 40.0% | |
! | TGTTTTCAGATGGAGCTGTT+TGG | + | chr4_1:39819199-39819218 | Msa0547090:CDS | 40.0% |
! | GTTTTCAGATGGAGCTGTTT+GGG | + | chr4_1:39819200-39819219 | Msa0547090:CDS | 40.0% |
TGGAGCTTGAGTTAGAAGGA+AGG | - | chr4_1:39814418-39814437 | None:intergenic | 45.0% | |
CTTGAGGTTTGTGTGTTGTG+TGG | + | chr4_1:39814778-39814797 | Msa0547090:five_prime_UTR | 45.0% | |
GTGTTGTGTGGGAAGAAACA+TGG | + | chr4_1:39814790-39814809 | Msa0547090:exon | 45.0% | |
TGTGGGAAGAAACATGGCTA+TGG | + | chr4_1:39814796-39814815 | Msa0547090:exon | 45.0% | |
CTTCTCATGGAACTAGGCTT+AGG | - | chr4_1:39814953-39814972 | None:intergenic | 45.0% | |
TCACAGCTTGTGTGTGAGAA+TGG | + | chr4_1:39815266-39815285 | Msa0547090:intron | 45.0% | |
! | GCATCAGTATTTGCTGCTGA+TGG | - | chr4_1:39815705-39815724 | None:intergenic | 45.0% |
AAGTCTCCTCCGCAATTGAT+AGG | - | chr4_1:39815887-39815906 | None:intergenic | 45.0% | |
GAGTTCCTTTCAAAGGCTAC+AGG | + | chr4_1:39815912-39815931 | Msa0547090:CDS | 45.0% | |
CAGTTCCTGTAGCCTTTGAA+AGG | - | chr4_1:39815920-39815939 | None:intergenic | 45.0% | |
CTACAGGAACTGCTGTTGAT+TGG | + | chr4_1:39815928-39815947 | Msa0547090:CDS | 45.0% | |
TATCTTGGTTTCGCGAGTGT+CGG | + | chr4_1:39816615-39816634 | Msa0547090:CDS | 45.0% | |
ACAATGTTTCCTGCCGGAAA+TGG | + | chr4_1:39816653-39816672 | Msa0547090:CDS | 45.0% | |
CTCAATGGTTCCTCCATTTC+CGG | - | chr4_1:39816669-39816688 | None:intergenic | 45.0% | |
TCTAAGAGTCCAGAAATCCC+GGG | - | chr4_1:39816810-39816829 | None:intergenic | 45.0% | |
TTTGGACAATGGCAGTCTTG+TGG | + | chr4_1:39816841-39816860 | Msa0547090:CDS | 45.0% | |
! | TTGATTCGACCATGTGATGG+TGG | + | chr4_1:39817041-39817060 | Msa0547090:CDS | 45.0% |
ATTGAACCTCCACCATCACA+TGG | - | chr4_1:39817053-39817072 | None:intergenic | 45.0% | |
CAAATAGCTCAGGAATCGAG+TGG | + | chr4_1:39817360-39817379 | Msa0547090:CDS | 45.0% | |
TCGAGTGGTGAAGTGGTATA+CGG | + | chr4_1:39817375-39817394 | Msa0547090:CDS | 45.0% | |
GGTGAAGTGGTATACGGATT+AGG | + | chr4_1:39817381-39817400 | Msa0547090:CDS | 45.0% | |
CTGAATGTTCGCAAAACAGC+AGG | - | chr4_1:39817414-39817433 | None:intergenic | 45.0% | |
CATTCAGCCAAAGATTGAGC+AGG | + | chr4_1:39817427-39817446 | Msa0547090:CDS | 45.0% | |
GGCTTCAATGACGCTGTAAA+TGG | + | chr4_1:39817581-39817600 | Msa0547090:CDS | 45.0% | |
GAATTCCTCCAAGCAATGTG+AGG | - | chr4_1:39817715-39817734 | None:intergenic | 45.0% | |
!!! | CGGTTTTGGTTCGCTTTCTA+AGG | + | chr4_1:39817856-39817875 | Msa0547090:CDS | 45.0% |
TGAAATCAGCCCATTCTGAG+CGG | - | chr4_1:39817887-39817906 | None:intergenic | 45.0% | |
ATGAGGCCTACAAGATTCAC+TGG | + | chr4_1:39817963-39817982 | Msa0547090:CDS | 45.0% | |
TGTTCAATTGTGTTCCCCAG+AGG | - | chr4_1:39818005-39818024 | None:intergenic | 45.0% | |
GGCTCAGCTTATGTAAGAAG+AGG | - | chr4_1:39818327-39818346 | None:intergenic | 45.0% | |
GAACTGATGAGAACGCTGTT+GGG | + | chr4_1:39818507-39818526 | Msa0547090:CDS | 45.0% | |
TCATCACATTCATCCGCCAT+AGG | - | chr4_1:39818717-39818736 | None:intergenic | 45.0% | |
AGGATGCCGTGAATACAAAC+CGG | + | chr4_1:39818800-39818819 | Msa0547090:CDS | 45.0% | |
! | CAGTGTCCGGTTTGTATTCA+CGG | - | chr4_1:39818809-39818828 | None:intergenic | 45.0% |
AGAGATGCTACTAACCCTGC+TGG | + | chr4_1:39815765-39815784 | Msa0547090:CDS | 50.0% | |
GAGATGCTACTAACCCTGCT+GGG | + | chr4_1:39815766-39815785 | Msa0547090:CDS | 50.0% | |
CAGACTCCTATCAATTGCGG+AGG | + | chr4_1:39815878-39815897 | Msa0547090:intron | 50.0% | |
TTGATTGGGTCCAGATGCCT+GGG | + | chr4_1:39815943-39815962 | Msa0547090:intron | 50.0% | |
TGTTATTCTCTTGGCCAGCC+TGG | + | chr4_1:39816350-39816369 | Msa0547090:intron | 50.0% | |
GCAAAGATCCCAACCGAATC+TGG | - | chr4_1:39816377-39816396 | None:intergenic | 50.0% | |
ATGTTTCCTGCCGGAAATGG+AGG | + | chr4_1:39816656-39816675 | Msa0547090:CDS | 50.0% | |
GAGCAGCAGCAGTTGGATTA+GGG | - | chr4_1:39816986-39817005 | None:intergenic | 50.0% | |
TGAGCAGCAGCAGTTGGATT+AGG | - | chr4_1:39816987-39817006 | None:intergenic | 50.0% | |
ACAAACTGAGCAGCAGCAGT+TGG | - | chr4_1:39816993-39817012 | None:intergenic | 50.0% | |
GTCGAATCAAGTAGCCACTC+GGG | - | chr4_1:39817031-39817050 | None:intergenic | 50.0% | |
GGTCGAATCAAGTAGCCACT+CGG | - | chr4_1:39817032-39817051 | None:intergenic | 50.0% | |
!! | ATTCGACCATGTGATGGTGG+AGG | + | chr4_1:39817044-39817063 | Msa0547090:CDS | 50.0% |
AGTACTTCTGGCACACTCCA+CGG | - | chr4_1:39817186-39817205 | None:intergenic | 50.0% | |
TCAGGAATCGAGTGGTGAAG+TGG | + | chr4_1:39817368-39817387 | Msa0547090:CDS | 50.0% | |
GTGGCTACCTGCTCAATCTT+TGG | - | chr4_1:39817437-39817456 | None:intergenic | 50.0% | |
GCCGACAGATATGACCTTCA+AGG | - | chr4_1:39817476-39817495 | None:intergenic | 50.0% | |
GTCATATCTGTCGGCAGTTC+TGG | + | chr4_1:39817481-39817500 | Msa0547090:intron | 50.0% | |
! | ACTGAACTGTGATGGTGCTG+AGG | + | chr4_1:39817628-39817647 | Msa0547090:CDS | 50.0% |
AGCAATGTGAGGGAACTTGC+TGG | - | chr4_1:39817704-39817723 | None:intergenic | 50.0% | |
GCAAGTTCCCTCACATTGCT+TGG | + | chr4_1:39817704-39817723 | Msa0547090:CDS | 50.0% | |
AGTTCCCTCACATTGCTTGG+AGG | + | chr4_1:39817707-39817726 | Msa0547090:CDS | 50.0% | |
TTTGCAGAACGTTCCTCCTG+CGG | + | chr4_1:39817836-39817855 | Msa0547090:intron | 50.0% | |
AGAAAGCGAACCAAAACCGC+AGG | - | chr4_1:39817855-39817874 | None:intergenic | 50.0% | |
TCCTGCTTTCAGTGATGCAG+CGG | - | chr4_1:39817925-39817944 | None:intergenic | 50.0% | |
CAGGAACCTATGCCTATCCA+GGG | + | chr4_1:39817940-39817959 | Msa0547090:CDS | 50.0% | |
AATCTTGTAGGCCTCATCCC+TGG | - | chr4_1:39817960-39817979 | None:intergenic | 50.0% | |
GGAACTGATGAGAACGCTGT+TGG | + | chr4_1:39818506-39818525 | Msa0547090:CDS | 50.0% | |
GTTCCCAGATGATGCTCCAT+TGG | + | chr4_1:39818568-39818587 | Msa0547090:CDS | 50.0% | |
! | GCACCAATGGAGCATCATCT+GGG | - | chr4_1:39818574-39818593 | None:intergenic | 50.0% |
CGTGAATACAAACCGGACAC+TGG | + | chr4_1:39818807-39818826 | Msa0547090:CDS | 50.0% | |
CTGACGTCAAATCCAGTGTC+CGG | - | chr4_1:39818822-39818841 | None:intergenic | 50.0% | |
GTGAACCCAACGACAACTCA+CGG | + | chr4_1:39818850-39818869 | Msa0547090:intron | 50.0% | |
CATGGCTATGGCTATGGCTG+TGG | + | chr4_1:39814808-39814827 | Msa0547090:exon | 55.0% | |
GTTGATTGGGTCCAGATGCC+TGG | + | chr4_1:39815942-39815961 | Msa0547090:intron | 55.0% | |
AGACCTTCATCCCAGGCATC+TGG | - | chr4_1:39815956-39815975 | None:intergenic | 55.0% | |
! | AGCCTGGTCCAGATTCGGTT+GGG | + | chr4_1:39816366-39816385 | Msa0547090:intron | 55.0% |
ATCCCAACCGAATCTGGACC+AGG | - | chr4_1:39816371-39816390 | None:intergenic | 55.0% | |
ATGGTTCCTCCATTTCCGGC+AGG | - | chr4_1:39816665-39816684 | None:intergenic | 55.0% | |
GTTTGTGAGAGGTCCCTGTC+TGG | + | chr4_1:39816948-39816967 | Msa0547090:CDS | 55.0% | |
AGAGCTGAAATGCTCCCGAG+TGG | + | chr4_1:39817014-39817033 | Msa0547090:CDS | 55.0% | |
! | GAACGTTCCTCCTGCGGTTT+TGG | + | chr4_1:39817842-39817861 | Msa0547090:intron | 55.0% |
AAGCGAACCAAAACCGCAGG+AGG | - | chr4_1:39817852-39817871 | None:intergenic | 55.0% | |
!! | TAAGGGAGCACCGCTCAGAA+TGG | + | chr4_1:39817874-39817893 | Msa0547090:CDS | 55.0% |
!! | AAGGGAGCACCGCTCAGAAT+GGG | + | chr4_1:39817875-39817894 | Msa0547090:CDS | 55.0% |
TCCGCTGCATCACTGAAAGC+AGG | + | chr4_1:39817921-39817940 | Msa0547090:CDS | 55.0% | |
GCAGGAACCTATGCCTATCC+AGG | + | chr4_1:39817939-39817958 | Msa0547090:CDS | 55.0% | |
CCTCATCCCTGGATAGGCAT+AGG | - | chr4_1:39817949-39817968 | None:intergenic | 55.0% | |
CCTATGCCTATCCAGGGATG+AGG | + | chr4_1:39817946-39817965 | Msa0547090:CDS | 55.0% | |
TGTAGGCCTCATCCCTGGAT+AGG | - | chr4_1:39817955-39817974 | None:intergenic | 55.0% | |
! | GGCACCAATGGAGCATCATC+TGG | - | chr4_1:39818575-39818594 | None:intergenic | 55.0% |
! | GATGCTCCATTGGTGCCTTC+TGG | + | chr4_1:39818578-39818597 | Msa0547090:CDS | 55.0% |
!! | CGGAAACCAGAAGGCACCAA+TGG | - | chr4_1:39818587-39818606 | None:intergenic | 55.0% |
GGGATGATGCGGAAACCAGA+AGG | - | chr4_1:39818596-39818615 | None:intergenic | 55.0% | |
CGGACACTGGATTTGACGTC+AGG | + | chr4_1:39818820-39818839 | Msa0547090:CDS | 55.0% | |
CACTGCCGTGAGTTGTCGTT+GGG | - | chr4_1:39818858-39818877 | None:intergenic | 55.0% | |
GGTCCAGATGCCTGGGATGA+AGG | + | chr4_1:39815950-39815969 | Msa0547090:intron | 60.0% | |
TGGCCAGCCTGGTCCAGATT+CGG | + | chr4_1:39816361-39816380 | Msa0547090:intron | 60.0% | |
CAACCGAATCTGGACCAGGC+TGG | - | chr4_1:39816367-39816386 | None:intergenic | 60.0% | |
! | CAGCCTGGTCCAGATTCGGT+TGG | + | chr4_1:39816365-39816384 | Msa0547090:intron | 60.0% |
TAGCTCCTGCCCGGGATTTC+TGG | + | chr4_1:39816798-39816817 | Msa0547090:CDS | 60.0% | |
AGAGTCCAGAAATCCCGGGC+AGG | - | chr4_1:39816806-39816825 | None:intergenic | 60.0% | |
! | GAGAGGTCCCTGTCTGGTTC+TGG | + | chr4_1:39816954-39816973 | Msa0547090:CDS | 60.0% |
!! | TCCCTGTCTGGTTCTGGCAC+TGG | + | chr4_1:39816960-39816979 | Msa0547090:CDS | 60.0% |
GCCAGTGCCAGAACCAGACA+GGG | - | chr4_1:39816964-39816983 | None:intergenic | 60.0% | |
GCACTGCCGTGAGTTGTCGT+TGG | - | chr4_1:39818859-39818878 | None:intergenic | 60.0% | |
GGAGTGGCAGCTCGAGCTTG+CGG | + | chr4_1:39816416-39816435 | Msa0547090:CDS | 65.0% | |
CAACGACGCTAGCTCCTGCC+CGG | + | chr4_1:39816789-39816808 | Msa0547090:CDS | 65.0% | |
AACGACGCTAGCTCCTGCCC+GGG | + | chr4_1:39816790-39816809 | Msa0547090:CDS | 65.0% | |
GGCCAGTGCCAGAACCAGAC+AGG | - | chr4_1:39816965-39816984 | None:intergenic | 65.0% | |
CGGGCAGGAGCTAGCGTCGT+TGG | - | chr4_1:39816791-39816810 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 39814106 | 39819407 | 39814106 | ID=Msa0547090;Name=Msa0547090 |
chr4_1 | mRNA | 39814106 | 39819407 | 39814106 | ID=Msa0547090-mRNA-1;Parent=Msa0547090;Name=Msa0547090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=703|0.73|0.68|1|0.93|0.93|16|0|687 |
chr4_1 | exon | 39814106 | 39815050 | 39814106 | ID=Msa0547090-mRNA-1:exon:10114;Parent=Msa0547090-mRNA-1 |
chr4_1 | exon | 39815154 | 39815274 | 39815154 | ID=Msa0547090-mRNA-1:exon:10115;Parent=Msa0547090-mRNA-1 |
chr4_1 | exon | 39815702 | 39815787 | 39815702 | ID=Msa0547090-mRNA-1:exon:10116;Parent=Msa0547090-mRNA-1 |
chr4_1 | exon | 39815881 | 39815950 | 39815881 | ID=Msa0547090-mRNA-1:exon:10117;Parent=Msa0547090-mRNA-1 |
chr4_1 | exon | 39816368 | 39816463 | 39816368 | ID=Msa0547090-mRNA-1:exon:10118;Parent=Msa0547090-mRNA-1 |
chr4_1 | exon | 39816590 | 39816703 | 39816590 | ID=Msa0547090-mRNA-1:exon:10119;Parent=Msa0547090-mRNA-1 |
chr4_1 | exon | 39816779 | 39816862 | 39816779 | ID=Msa0547090-mRNA-1:exon:10120;Parent=Msa0547090-mRNA-1 |
chr4_1 | exon | 39816948 | 39817103 | 39816948 | ID=Msa0547090-mRNA-1:exon:10121;Parent=Msa0547090-mRNA-1 |
chr4_1 | exon | 39817183 | 39817257 | 39817183 | ID=Msa0547090-mRNA-1:exon:10122;Parent=Msa0547090-mRNA-1 |
chr4_1 | exon | 39817342 | 39817448 | 39817342 | ID=Msa0547090-mRNA-1:exon:10123;Parent=Msa0547090-mRNA-1 |
chr4_1 | exon | 39817580 | 39817763 | 39817580 | ID=Msa0547090-mRNA-1:exon:10124;Parent=Msa0547090-mRNA-1 |
chr4_1 | exon | 39817843 | 39818031 | 39817843 | ID=Msa0547090-mRNA-1:exon:10125;Parent=Msa0547090-mRNA-1 |
chr4_1 | exon | 39818198 | 39818278 | 39818198 | ID=Msa0547090-mRNA-1:exon:10126;Parent=Msa0547090-mRNA-1 |
chr4_1 | exon | 39818497 | 39818631 | 39818497 | ID=Msa0547090-mRNA-1:exon:10127;Parent=Msa0547090-mRNA-1 |
chr4_1 | exon | 39818790 | 39818849 | 39818790 | ID=Msa0547090-mRNA-1:exon:10128;Parent=Msa0547090-mRNA-1 |
chr4_1 | exon | 39819144 | 39819407 | 39819144 | ID=Msa0547090-mRNA-1:exon:10129;Parent=Msa0547090-mRNA-1 |
chr4_1 | five_prime_UTR | 39814106 | 39814808 | 39814106 | ID=Msa0547090-mRNA-1:five_prime_utr;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39814809 | 39815050 | 39814809 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39815154 | 39815274 | 39815154 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39815702 | 39815787 | 39815702 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39815881 | 39815950 | 39815881 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39816368 | 39816463 | 39816368 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39816590 | 39816703 | 39816590 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39816779 | 39816862 | 39816779 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39816948 | 39817103 | 39816948 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39817183 | 39817257 | 39817183 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39817342 | 39817448 | 39817342 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39817580 | 39817763 | 39817580 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39817843 | 39818031 | 39817843 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39818198 | 39818278 | 39818198 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39818497 | 39818631 | 39818497 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39818790 | 39818849 | 39818790 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
chr4_1 | CDS | 39819144 | 39819407 | 39819144 | ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1 |
Gene Sequence |
Protein sequence |