AlfalfaGEDB | Msa0547090

M. sativa cultivar zhongmu-4 / Msa0547090

KEGG: K09338
GO: GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0547090	XP_013456006.1	96.452	620	2	2	1	600	1	620	0.0	1222

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0547090	sp\|Q9SE43\|REV_ARATH	82.010	617	87	6	3	600	1	612	0.0	1043

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0547090	A0A072UK13	96.452	620	2	2	1	600	1	620	0.0	1222

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TFs/TRs:

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Gene ID	Type	Classification
Msa0547090	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0547090	Msa0642980	0.882972	6.652593e-71	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0547090	MtrunA17_Chr4g0028991	96.452	620	2	2	1	600	1	620	0.0	1222
Msa0547090	MtrunA17_Chr2g0326731	77.939	621	108	6	3	600	1	615	0.0	1002
Msa0547090	MtrunA17_Chr2g0292391	69.836	610	150	5	19	598	4	609	0.0	870
Msa0547090	MtrunA17_Chr2g0331131	66.230	610	164	9	24	600	10	610	0.0	803
Msa0547090	MtrunA17_Chr8g0340411	65.303	611	170	11	21	600	7	606	0.0	792
Msa0547090	MtrunA17_Chr3g0140351	65.615	602	176	7	24	600	16	611	0.0	790
Msa0547090	MtrunA17_Chr3g0095891	94.382	89	5	0	599	687	373	461	1.17e-49	180
Msa0547090	MtrunA17_Chr5g0442921	89.888	89	8	1	599	687	469	556	1.66e-46	173
Msa0547090	MtrunA17_Chr2g0331581	24.621	528	275	20	29	463	143	640	9.97e-22	100
Msa0547090	MtrunA17_Chr2g0322731	24.515	412	232	16	192	575	345	705	9.78e-16	81.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0547090	AT5G60690.1	82.010	617	87	6	3	600	1	612	0.0	1043
Msa0547090	AT2G34710.1	69.218	614	155	6	19	600	16	627	0.0	855
Msa0547090	AT1G30490.1	66.879	628	169	7	7	600	2	624	0.0	842
Msa0547090	AT4G32880.1	64.935	616	178	9	17	600	3	612	0.0	801
Msa0547090	AT1G52150.3	66.993	612	153	10	24	600	13	610	0.0	798
Msa0547090	AT1G52150.2	66.993	612	154	10	24	600	13	611	0.0	798
Msa0547090	AT1G52150.1	66.993	612	153	10	24	600	13	610	0.0	797
Msa0547090	AT3G59080.2	68.539	89	27	1	599	687	412	499	4.54e-35	140
Msa0547090	AT3G59080.1	68.539	89	27	1	599	687	448	535	8.05e-35	139
Msa0547090	AT2G42980.1	67.033	91	27	2	599	687	438	527	1.06e-32	133

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Find 194 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGGAATGAAGAAGA+AGG	0.489195	4_1:-39814221	None:intergenic
AAATCTGCACTTTCAATAAT+TGG	0.146871	4_1:+39819297	Msa0547090:CDS
AACAAGTTGAAGCATTGGAA+AGG	0.552407	4_1:+39814912	Msa0547090:CDS
AACCAAACCTTGATCTGTTT+AGG	0.396617	4_1:-39815016	None:intergenic
AACCTAAACAGATCAAGGTT+TGG	0.433904	4_1:+39815014	Msa0547090:CDS
AACGACGCTAGCTCCTGCCC+GGG	0.593425	4_1:+39816790	Msa0547090:CDS
AAGAAACATGGCTATGGCTA+TGG	0.538767	4_1:+39814802	Msa0547090:exon
AAGAACTTTCATTTATCTTG+AGG	0.505756	4_1:+39814762	Msa0547090:five_prime_UTR
AAGCCATGTTATAATGTGAG+TGG	0.561828	4_1:+39819141	Msa0547090:intron
AAGCGAACCAAAACCGCAGG+AGG	0.620397	4_1:-39817849	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAGGAATGAAGAAGA+AGG	-	chr4_1:39814224-39814243	None:intergenic	30.0%
CAGTATCAATCAAGAGAAAA+AGG	-	chr4_1:39814280-39814299	None:intergenic	30.0%
TTGTAACTTTGCATGAGAAA+TGG	-	chr4_1:39814728-39814747	None:intergenic	30.0%
CATATAGAAAGTAGTAGTAG+TGG	+	chr4_1:39814836-39814855	Msa0547090:CDS	30.0%
ATTGATAAGCATCTAGATTC+AGG	+	chr4_1:39814866-39814885	Msa0547090:CDS	30.0%
TTGATAAGCATCTAGATTCA+GGG	+	chr4_1:39814867-39814886	Msa0547090:CDS	30.0%
TAGATTCAGGGAAATATGTT+AGG	+	chr4_1:39814879-39814898	Msa0547090:CDS	30.0%
AATCAATTGTTGTCTTCTCA+TGG	-	chr4_1:39814966-39814985	None:intergenic	30.0%
GTAATCAATTGTAGAGGAAA+AGG	-	chr4_1:39815458-39815477	None:intergenic	30.0%
TCAATTCACTTTGACATGAA+CGG	+	chr4_1:39815501-39815520	Msa0547090:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	39814106	39819407	39814106	ID=Msa0547090;Name=Msa0547090
chr4_1	mRNA	39814106	39819407	39814106	ID=Msa0547090-mRNA-1;Parent=Msa0547090;Name=Msa0547090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=703\|0.73\|0.68\|1\|0.93\|0.93\|16\|0\|687
chr4_1	exon	39814106	39815050	39814106	ID=Msa0547090-mRNA-1:exon:10114;Parent=Msa0547090-mRNA-1
chr4_1	exon	39815154	39815274	39815154	ID=Msa0547090-mRNA-1:exon:10115;Parent=Msa0547090-mRNA-1
chr4_1	exon	39815702	39815787	39815702	ID=Msa0547090-mRNA-1:exon:10116;Parent=Msa0547090-mRNA-1
chr4_1	exon	39815881	39815950	39815881	ID=Msa0547090-mRNA-1:exon:10117;Parent=Msa0547090-mRNA-1
chr4_1	exon	39816368	39816463	39816368	ID=Msa0547090-mRNA-1:exon:10118;Parent=Msa0547090-mRNA-1
chr4_1	exon	39816590	39816703	39816590	ID=Msa0547090-mRNA-1:exon:10119;Parent=Msa0547090-mRNA-1
chr4_1	exon	39816779	39816862	39816779	ID=Msa0547090-mRNA-1:exon:10120;Parent=Msa0547090-mRNA-1
chr4_1	exon	39816948	39817103	39816948	ID=Msa0547090-mRNA-1:exon:10121;Parent=Msa0547090-mRNA-1
chr4_1	exon	39817183	39817257	39817183	ID=Msa0547090-mRNA-1:exon:10122;Parent=Msa0547090-mRNA-1
chr4_1	exon	39817342	39817448	39817342	ID=Msa0547090-mRNA-1:exon:10123;Parent=Msa0547090-mRNA-1
chr4_1	exon	39817580	39817763	39817580	ID=Msa0547090-mRNA-1:exon:10124;Parent=Msa0547090-mRNA-1
chr4_1	exon	39817843	39818031	39817843	ID=Msa0547090-mRNA-1:exon:10125;Parent=Msa0547090-mRNA-1
chr4_1	exon	39818198	39818278	39818198	ID=Msa0547090-mRNA-1:exon:10126;Parent=Msa0547090-mRNA-1
chr4_1	exon	39818497	39818631	39818497	ID=Msa0547090-mRNA-1:exon:10127;Parent=Msa0547090-mRNA-1
chr4_1	exon	39818790	39818849	39818790	ID=Msa0547090-mRNA-1:exon:10128;Parent=Msa0547090-mRNA-1
chr4_1	exon	39819144	39819407	39819144	ID=Msa0547090-mRNA-1:exon:10129;Parent=Msa0547090-mRNA-1
chr4_1	five_prime_UTR	39814106	39814808	39814106	ID=Msa0547090-mRNA-1:five_prime_utr;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39814809	39815050	39814809	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39815154	39815274	39815154	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39815702	39815787	39815702	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39815881	39815950	39815881	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39816368	39816463	39816368	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39816590	39816703	39816590	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39816779	39816862	39816779	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39816948	39817103	39816948	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39817183	39817257	39817183	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39817342	39817448	39817342	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39817580	39817763	39817580	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39817843	39818031	39817843	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39818198	39818278	39818198	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39818497	39818631	39818497	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39818790	39818849	39818790	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1
chr4_1	CDS	39819144	39819407	39819144	ID=Msa0547090-mRNA-1:cds;Parent=Msa0547090-mRNA-1

Gene Sequence

>Msa0547090

ATGGCTATGGCTATGGCTGTGGCTCATCATATAGAAAGTAGTAGTAGTGGTGGAAGCATTGATAAGCATCTAGATTCAGGGAAATATGTTAGGTACACTACTGAACAAGTTGAAGCATTGGAAAGGGTTTATGCTGAGTGTCCTAAGCCTAGTTCCATGAGAAGACAACAATTGATTCGTGAGTGTCCTATTCTTTCCAACATTGAACCTAAACAGATCAAGGTTTGGTTCCAAAATCGAAGGTGTAGAGAGAAGCAAAGAAAAGAGGCTTCAAGGCTTCAAACTGTGAATAGGAAATTGTCTGCAATGAACAAGTTGTTGATGGAGGAAAATGATAGGTTGCAGAAACAAGTGTCACAGCTTCCATCAGCAGCAAATACTGATGCAAGTTGTGATTCGGTAGTTACTACTCCTCAGAATTCTAAGAGAGATGCTACTAACCCTGCTGGACTCCTATCAATTGCGGAGGAGACTTTGACAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGCCTGGTCCAGATTCGGTTGGGATCTTTGCGATTTCACAAAGTTGTAGTGGAGTGGCAGCTCGAGCTTGCGGTCTTGTTAGTTTAGAACCTACAAAGATTGCAGAGATCCTTAAAGATCGTTTATCTTGGTTTCGCGAGTGTCGGAACCTAGAAGTTTTCACAATGTTTCCTGCCGGAAATGGAGGAACCATTGAGCTTATTTATACACAGACATATGCTCCAACGACGCTAGCTCCTGCCCGGGATTTCTGGACTCTTAGATACACTACAACTTTGGACAATGGCAGTCTTGTGGTTTGTGAGAGGTCCCTGTCTGGTTCTGGCACTGGCCCTAATCCAACTGCTGCTGCTCAGTTTGTAAGAGCTGAAATGCTCCCGAGTGGCTACTTGATTCGACCATGTGATGGTGGAGGTTCAATCATCCACATTGTAGACCACTTAAATCTTGAACCGTGGAGTGTGCCAGAAGTACTACGACCACTTTATGAATCACCAAAGGTGGTGGCTCAAAAAATGACCATTGCAGCACTTCGATATATTAGGCAAATAGCTCAGGAATCGAGTGGTGAAGTGGTATACGGATTAGGTAGACAGCCTGCTGTTTTGCGAACATTCAGCCAAAGATTGAGCAGAGGCTTCAATGACGCTGTAAATGGATTCAGTGATGATGGTTGGTCTATACTGAACTGTGATGGTGCTGAGGATGTAATTATTGCTGTTAATTCAACCAAGAATTTAAGTAGCTCTTCTAATCCAGCAAGTTCCCTCACATTGCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTGCTACAAAACGTTCCTCCTGCGGTTTTGGTTCGCTTTCTAAGGGAGCACCGCTCAGAATGGGCTGATTTCAATGTTGATGCATACTCCGCTGCATCACTGAAAGCAGGAACCTATGCCTATCCAGGGATGAGGCCTACAAGATTCACTGGCAATCAAATAATCATGCCTCTGGGGAACACAATTGAACATGAAGAGATGCTTGAAGTTATTAGGCTTGAAGGCCATTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGATATTCATCTGTTACAGATATGTAGTGGAACTGATGAGAACGCTGTTGGGACTTGTTCTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCAGATGATGCTCCATTGGTGCCTTCTGGTTTCCGCATCATCCCATTAGATTCAAAACCAGGTGATAAGAAGGATGCCGTGAATACAAACCGGACACTGGATTTGACGTCAGGTCTTGAACCATGTTATAATGTGAGTGGAATTGAAGAAATGGAATTGCCTGACTTTGGAATATTGTTTTCAGATGGAGCTGTTTGGGATTTTCCTGTTGAGAATTATTTTATTCAGATTGAATCTGATGATGTTGTTTGTTTGGCTATTTTAGGGACTCCTAAATCTGCACTTTCAATAATTGGAAATTATCAGCAACAGAATTTTCAGATTTTGTATGATATGAAGAAATCTAGACTTGGTTATGCTCCAATGAAGTGCAATGAAGTTTAA

Protein sequence

>Msa0547090

MAMAMAVAHHIESSSSGGSIDKHLDSGKYVRYTTEQVEALERVYAECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLPSAANTDASCDSVVTTPQNSKRDATNPAGLLSIAEETLTEFLSKATGTAVDWPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRLSWFRECRNLEVFTMFPAGNGGTIELIYTQTYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGTGPNPTAAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEPWSVPEVLRPLYESPKVVAQKMTIAALRYIRQIAQESSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFSDDGWSILNCDGAEDVIIAVNSTKNLSSSSNPASSLTLLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGTYAYPGMRPTRFTGNQIIMPLGNTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGTDENAVGTCSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDAVNTNRTLDLTSGLEPCYNVSGIEEMELPDFGILFSDGAVWDFPVENYFIQIESDDVVCLAILGTPKSALSIIGNYQQQNFQILYDMKKSRLGYAPMKCNEV*