AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0642980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642980 MtrunA17_Chr4g0028991 94.444 846 8 4 1 807 1 846 0.0 1632
Msa0642980 MtrunA17_Chr2g0326731 75.325 847 159 10 3 807 1 839 0.0 1311
Msa0642980 MtrunA17_Chr2g0292391 66.231 841 224 11 19 807 4 836 0.0 1116
Msa0642980 MtrunA17_Chr2g0331131 62.963 837 247 13 24 807 10 836 0.0 1043
Msa0642980 MtrunA17_Chr8g0340411 62.172 838 254 15 21 807 7 832 0.0 1035
Msa0642980 MtrunA17_Chr3g0140351 62.515 827 260 12 24 807 16 835 0.0 1032
Msa0642980 MtrunA17_Chr2g0322731 24.515 412 232 16 192 575 345 705 3.17e-15 80.1
Msa0642980 MtrunA17_Chr2g0322731 34.653 101 59 2 12 109 87 183 3.53e-12 70.1
Msa0642980 MtrunA17_Chr4g0024351 22.628 411 239 15 192 574 304 663 2.19e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642980 AT5G60690.1 77.922 847 140 10 3 807 1 842 0.0 1338
Msa0642980 AT2G34710.1 65.603 846 225 14 19 807 16 852 0.0 1087
Msa0642980 AT1G30490.1 63.636 858 237 13 7 807 2 841 0.0 1075
Msa0642980 AT1G52150.2 64.124 839 232 14 24 807 13 837 0.0 1048
Msa0642980 AT1G52150.1 64.124 839 231 14 24 807 13 836 0.0 1046
Msa0642980 AT4G32880.1 61.758 842 260 17 17 807 3 833 0.0 1018
Msa0642980 AT1G52150.3 64.051 790 215 14 24 758 13 788 0.0 978
Msa0642980 AT5G32670.1 67.143 70 23 0 272 341 37 106 6.62e-26 106
Msa0642980 AT1G79840.1 23.280 683 363 28 28 627 104 708 6.61e-24 108
Msa0642980 AT1G79840.3 23.280 683 363 28 28 627 46 650 7.90e-24 107
Msa0642980 AT1G79840.6 23.280 683 363 28 28 627 46 650 7.90e-24 107
Msa0642980 AT1G79840.2 23.280 683 363 28 28 627 133 737 1.06e-23 107
Msa0642980 AT1G79840.4 24.335 526 306 21 28 479 104 611 1.84e-22 103
Msa0642980 AT5G52170.3 23.861 373 222 10 29 351 61 421 7.89e-15 79.0
Msa0642980 AT5G52170.1 23.861 373 222 10 29 351 61 421 7.89e-15 79.0
Msa0642980 AT5G52170.2 23.861 373 222 10 29 351 61 421 8.51e-15 79.0
Msa0642980 AT4G21750.2 23.829 491 273 22 175 632 306 728 3.82e-13 73.9
Msa0642980 AT4G21750.1 23.829 491 273 22 175 632 306 728 3.82e-13 73.9
Msa0642980 AT4G21750.3 23.829 491 273 22 175 632 306 728 3.82e-13 73.9
Msa0642980 AT4G21750.4 23.829 491 273 22 175 632 306 728 3.82e-13 73.9
Msa0642980 AT1G05230.8 24.272 412 233 16 192 575 300 660 2.72e-12 70.9
Msa0642980 AT1G05230.4 24.272 412 233 16 192 575 300 660 2.72e-12 70.9
Msa0642980 AT1G05230.9 24.272 412 233 16 192 575 300 660 2.72e-12 70.9
Msa0642980 AT1G05230.10 24.272 412 233 16 192 575 300 660 2.72e-12 70.9
Msa0642980 AT1G05230.7 24.272 412 233 16 192 575 300 660 2.72e-12 70.9
Msa0642980 AT1G05230.11 24.272 412 233 16 192 575 300 660 2.72e-12 70.9
Msa0642980 AT1G05230.2 24.272 412 233 16 192 575 300 660 2.72e-12 70.9
Msa0642980 AT1G05230.6 24.272 412 233 16 192 575 300 660 2.72e-12 70.9
Msa0642980 AT1G05230.5 24.272 412 233 16 192 575 300 660 2.72e-12 70.9
Msa0642980 AT1G05230.1 24.272 412 233 16 192 575 300 660 2.72e-12 70.9
Msa0642980 AT1G05230.3 24.757 412 229 17 192 575 300 658 1.91e-11 68.2
Msa0642980 AT1G05230.12 26.460 291 177 11 192 463 300 572 7.79e-11 66.2

Find 241 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCTCCTGCCCGGGATTTC+TGG 0.127870 4_3:-45325212 Msa0642980:CDS
GATAGAATATGACAAGTTTA+AGG 0.143295 4_3:+45327313 None:intergenic
TAGCTTTCTCTTTCATAAAT+TGG 0.177453 4_3:-45322188 Msa0642980:CDS
AGAAGAGCTACTTAAATTCT+TGG 0.189495 4_3:+45324334 None:intergenic
CATCACCAACATGCTTATTA+AGG 0.209228 4_3:-45327758 Msa0642980:five_prime_UTR
CTCAATGGTTCCTCCATTTC+CGG 0.218751 4_3:+45325344 None:intergenic
GAACGTTCCTCCTGCGGTTT+TGG 0.238613 4_3:-45324167 Msa0642980:CDS
GAATTAATCTTGTAAATTAT+TGG 0.241549 4_3:-45322031 Msa0642980:three_prime_UTR
ACCAAGATAAACGATCTTTA+AGG 0.256930 4_3:+45325409 None:intergenic
AGTTTAAGGGAAAATGAAAA+TGG 0.259645 4_3:+45327327 None:intergenic
TCAAGATAAATGAAAGTTCT+TGG 0.266760 4_3:+45327246 None:intergenic
TAGGGATATTCATCTGTTAC+AGG 0.266795 4_3:-45323752 Msa0642980:intron
GAAACATTGTGAAAACTTCT+AGG 0.277838 4_3:+45325370 None:intergenic
GATGCTCCATTGGTGCCTTC+TGG 0.293806 4_3:-45323431 Msa0642980:CDS
TGAGCTAGTGTAACTGCTTC+TGG 0.294323 4_3:+45322928 None:intergenic
AGAAAATGAACAAGAAAGTT+TGG 0.295020 4_3:+45327365 None:intergenic
GGCTTCAATGACGCTGTAAA+TGG 0.300316 4_3:-45324428 Msa0642980:CDS
CTGAGATCAGATTCTCTTGT+TGG 0.314455 4_3:-45322767 Msa0642980:intron
GAGAGGTCCCTGTCTGGTTC+TGG 0.318135 4_3:-45325056 Msa0642980:CDS
GTGGCTACCTGCTCAATCTT+TGG 0.322456 4_3:+45324575 None:intergenic
TGAGCAGCAGCAGTTGGATT+AGG 0.323234 4_3:+45325026 None:intergenic
TGCAGATGCTTGAAGTTATT+AGG 0.326140 4_3:-45323816 Msa0642980:intron
TGATTGCCAGTGAATCTTGT+AGG 0.327004 4_3:+45324040 None:intergenic
ATAGAATATGACAAGTTTAA+GGG 0.328788 4_3:+45327314 None:intergenic
TGGCCAGCCTGGTCCGGATT+CGG 0.332357 4_3:-45325642 Msa0642980:intron
GATAGGCACTTCGATATATT+AGG 0.337752 4_3:-45324672 Msa0642980:intron
CAGTATCAATCAAGAGAAAA+AGG 0.339257 4_3:+45327730 None:intergenic
TAAAGTGGTCGTAGTACTTC+TGG 0.341715 4_3:+45324814 None:intergenic
TCAACACTGATCGGGTGTTT+TGG 0.344060 4_3:+45323115 None:intergenic
TCCCTGTCTGGTTCTGGCAC+TGG 0.345502 4_3:-45325050 Msa0642980:CDS
CTTGAAGTTATTAGGCTTGA+AGG 0.347229 4_3:-45323808 Msa0642980:CDS
TCTGGGAACATTTCATCAAT+TGG 0.355893 4_3:+45323455 None:intergenic
GGGTTTGCTTATCTGCCAGC+TGG 0.357471 4_3:-45322303 Msa0642980:CDS
CAAGATAAGTTTGAATGAAA+TGG 0.365439 4_3:+45327572 None:intergenic
GGCACCAATGGAGCATCATC+TGG 0.365656 4_3:+45323437 None:intergenic
TCTTAGATACACTACAACTT+TGG 0.376901 4_3:-45325187 Msa0642980:CDS
AGTATGGAATCTACCTTTGT+AGG 0.379475 4_3:+45325548 None:intergenic
TGGAGAACCAGGAGAAAGTT+TGG 0.380345 4_3:+45322948 None:intergenic
ATTGATAAGCATCTAGATTC+AGG 0.380570 4_3:-45327140 Msa0642980:CDS
ACAATGTTTCCTGCCGGAAA+TGG 0.381342 4_3:-45325357 Msa0642980:CDS
TTCTCTTGGCCAGCCTGGTC+CGG 0.383123 4_3:-45325648 Msa0642980:intron
GGTGAAGTGGTATACGGATT+AGG 0.388453 4_3:-45324628 Msa0642980:CDS
AACCAAACCTTGATCTGTTT+AGG 0.396617 4_3:+45326990 None:intergenic
TCCTTAAAGATCGTTTATCT+TGG 0.397827 4_3:-45325410 Msa0642980:CDS
CAAGGCTTCAAACTGTGAAT+AGG 0.399527 4_3:-45326821 Msa0642980:CDS
GAAAGTTTGGCACCAACAGC+TGG 0.405904 4_3:+45322961 None:intergenic
TGCAATTAACAAGTTGTTGA+TGG 0.409692 4_3:-45326790 Msa0642980:CDS
TCGAGTGGTGAAGTGGTATA+CGG 0.413960 4_3:-45324634 Msa0642980:CDS
TAGATTCAGGGAAATATGTT+AGG 0.416438 4_3:-45327127 Msa0642980:CDS
CTACAGGAACTGCTGTTGAT+TGG 0.418349 4_3:-45326077 Msa0642980:CDS
GAGCAGCAGCAGTTGGATTA+GGG 0.419002 4_3:+45325027 None:intergenic
TACAGGAACTGCTGTTGATT+GGG 0.419994 4_3:-45326076 Msa0642980:intron
GCAAAGATCCCAACCGAATC+CGG 0.421507 4_3:+45325629 None:intergenic
GTTGGTGCCAAACTTTCTCC+TGG 0.425700 4_3:-45322955 Msa0642980:CDS
TGTTGTCTTCTCATGGAACT+AGG 0.427476 4_3:+45327050 None:intergenic
GGGATCTGCATGTCGACAAT+GGG 0.430271 4_3:-45322282 Msa0642980:CDS
CAGTGTCCGGTTTGTATTCA+CGG 0.430832 4_3:+45323203 None:intergenic
AACCTAAACAGATCAAGGTT+TGG 0.433904 4_3:-45326992 Msa0642980:CDS
CAATGAACAGTGTTATCTTC+TGG 0.436228 4_3:+45322213 None:intergenic
CACTGCCGTGAGTTGTCGTT+GGG 0.437038 4_3:+45323154 None:intergenic
CAATCAAATAATCATGCCTC+TGG 0.439280 4_3:-45324023 Msa0642980:CDS
GCAGGAACCTATGCCTATCC+AGG 0.445397 4_3:-45324070 Msa0642980:CDS
GCAAGTTCCCTCACATTGCT+TGG 0.446182 4_3:-45324305 Msa0642980:CDS
GATAAAATATTTGACGAGTC+TGG 0.446806 4_3:-45322466 Msa0642980:CDS
AGTGAAGTTGTCTTTGTCCT+AGG 0.447473 4_3:+45327650 None:intergenic
GCAAGATAATGTTGTAATCA+TGG 0.449611 4_3:-45323058 Msa0642980:CDS
AGCAAAGAAAAGAGGCTTCA+AGG 0.453264 4_3:-45326839 Msa0642980:CDS
GTTTAAGGGAAAATGAAAAT+GGG 0.454899 4_3:+45327328 None:intergenic
AATCAATTGTTGTCTTCTCA+TGG 0.455291 4_3:+45327043 None:intergenic
CTCTGTGCAGAGGGTTGCCA+TGG 0.455799 4_3:-45323007 Msa0642980:intron
AATCACCTGGTGCATTAACT+TGG 0.456704 4_3:+45322417 None:intergenic
GTTTATACCGGACGGAGAAA+TGG 0.458027 4_3:+45322984 None:intergenic
GCCATGGCCATTTCTCCGTC+CGG 0.458111 4_3:-45322991 Msa0642980:CDS
AGCAATGTGAGGGAACTTGC+TGG 0.458432 4_3:+45324308 None:intergenic
GTTTGTGAGAGGTCCCTGTC+TGG 0.459213 4_3:-45325062 Msa0642980:CDS
CAACGACGCTAGCTCCTGCC+CGG 0.459822 4_3:-45325221 Msa0642980:CDS
GGTTCAATGTTGGAAAGAAT+AGG 0.460052 4_3:+45327011 None:intergenic
CAGCCTGGTCCGGATTCGGT+TGG 0.460852 4_3:-45325638 Msa0642980:CDS
AAGTCTCCTCCGCAATTGAT+AGG 0.463644 4_3:+45326121 None:intergenic
AGCCTGGTCCGGATTCGGTT+GGG 0.465213 4_3:-45325637 Msa0642980:CDS
CATTGAACCTAAACAGATCA+AGG 0.465302 4_3:-45326997 Msa0642980:CDS
TTTGGTATTGCAGTCGCAGC+CGG 0.467861 4_3:-45322563 Msa0642980:intron
GAAATCAATGATAAATTTGA+AGG 0.470011 4_3:-45322133 Msa0642980:three_prime_UTR
TACTGATGCAAGTTGTGATT+CGG 0.473449 4_3:-45326289 Msa0642980:CDS
CTTCTCATGGAACTAGGCTT+AGG 0.473637 4_3:+45327056 None:intergenic
GTCTTACTTCAAGATTTAAG+TGG 0.475390 4_3:+45324922 None:intergenic
TTGAGGTTTGTGTGTTGTGT+GGG 0.476400 4_3:-45327227 Msa0642980:five_prime_UTR
ACAAGACTATATTCCTTCCT+AGG 0.476603 4_3:-45327667 Msa0642980:five_prime_UTR
TATCTTGGTTTCGCGAGTGT+CGG 0.476648 4_3:-45325395 Msa0642980:CDS
CTTAATAAGCATGTTGGTGA+TGG 0.477301 4_3:+45327759 None:intergenic
AATCTAATTAAATGCAAACT+TGG 0.478916 4_3:+45322082 None:intergenic
TGTTGATGGAGGAAAATGAT+AGG 0.483631 4_3:-45326776 Msa0642980:CDS
TACTGAACAAGTTGAAGCAT+TGG 0.483862 4_3:-45327099 Msa0642980:CDS
AAGGGAGCACCGCTCAGAAT+GGG 0.484393 4_3:-45324134 Msa0642980:CDS
ATCTAAGAGTCCAGAAATCC+CGG 0.484814 4_3:+45325202 None:intergenic
TCTTGCATAGTGCTGTCAAA+AGG 0.484830 4_3:+45323075 None:intergenic
GCATCAGTATTTGCTGCTGA+TGG 0.488575 4_3:+45326303 None:intergenic
AAAGAAAGGAATGAAGAAGA+AGG 0.489195 4_3:+45327786 None:intergenic
GAAATGGAGCTTGAGTTAGA+AGG 0.492851 4_3:+45327588 None:intergenic
CGGGCAGGAGCTAGCGTCGT+TGG 0.492905 4_3:+45325222 None:intergenic
AGAGATGCTACTAACCCTGC+TGG 0.494241 4_3:-45326240 Msa0642980:CDS
ACCTTTGGTGATTCATAAAG+TGG 0.494265 4_3:+45324799 None:intergenic
GCACTGCCGTGAGTTGTCGT+TGG 0.495965 4_3:+45323153 None:intergenic
CATTACCTTGTGAACCAAGA+TGG 0.497411 4_3:+45327443 None:intergenic
CTGAATGTTCGCAAAACAGC+AGG 0.501563 4_3:+45324598 None:intergenic
ATCCCAACCGAATCCGGACC+AGG 0.503586 4_3:+45325635 None:intergenic
AAGAACTTTCATTTATCTTG+AGG 0.505756 4_3:-45327244 Msa0642980:five_prime_UTR
TCAAGCTGGCCTTGACATGT+TGG 0.506180 4_3:-45322524 Msa0642980:CDS
GAGTGAAGTTGAGACTTGTA+TGG 0.508388 4_3:-45322000 Msa0642980:three_prime_UTR
CTTGCATAGTGCTGTCAAAA+GGG 0.508484 4_3:+45323076 None:intergenic
GGCCAGTGCCAGAACCAGAC+AGG 0.510237 4_3:+45325048 None:intergenic
TTAGCACTGTCTAGTTTGAA+AGG 0.513848 4_3:-45321960 Msa0642980:three_prime_UTR
GGTTTGCTTATCTGCCAGCT+GGG 0.514174 4_3:-45322302 Msa0642980:CDS
ATATATTAGGCAAATAGCTC+AGG 0.515140 4_3:-45324659 Msa0642980:CDS
ACAAGTTGAAGCATTGGAAA+GGG 0.515957 4_3:-45327093 Msa0642980:CDS
AGGCAATAGTCAACACTGAT+CGG 0.516074 4_3:+45323106 None:intergenic
TAAGGGAGCACCGCTCAGAA+TGG 0.516788 4_3:-45324135 Msa0642980:CDS
GAGTTCCTTTCAAAGGCTAC+AGG 0.517677 4_3:-45326093 Msa0642980:CDS
GGCAATAGTCAACACTGATC+GGG 0.517701 4_3:+45323107 None:intergenic
AAGCAGTTACACTAGCTCAA+TGG 0.520279 4_3:-45322924 Msa0642980:CDS
TTCTTCTTGCAGATATGTAG+TGG 0.520407 4_3:-45323524 Msa0642980:intron
ACCAACAGCTGGGTTTATAC+CGG 0.520732 4_3:+45322972 None:intergenic
GTCGACATGCAGATCCCAGC+TGG 0.520952 4_3:+45322288 None:intergenic
CGGACACTGGATTTGACGTC+AGG 0.521504 4_3:-45323189 Msa0642980:CDS
CTTGAGGTTTGTGTGTTGTG+TGG 0.524120 4_3:-45327228 Msa0642980:five_prime_UTR
GATCTGTTTAGGTTCAATGT+TGG 0.526382 4_3:+45327001 None:intergenic
TTTACAAGATTAATTCAACT+TGG 0.526796 4_3:+45322038 None:intergenic
ATAGAAAGTAGTAGTAGTGG+TGG 0.530086 4_3:-45327167 Msa0642980:CDS
TGGGATCTGCATGTCGACAA+TGG 0.533448 4_3:-45322283 Msa0642980:CDS
CATGGCTATGGCTATGGCTG+TGG 0.534941 4_3:-45327198 Msa0642980:CDS
CATCTTGGTTCACAAGGTAA+TGG 0.535554 4_3:-45327442 Msa0642980:five_prime_UTR
TTCGTATTTGCAAATCAAGC+TGG 0.538416 4_3:-45322538 Msa0642980:CDS
CTGTGTATAAATAAGCTCAA+TGG 0.538636 4_3:+45325329 None:intergenic
AAGAAACATGGCTATGGCTA+TGG 0.538767 4_3:-45327204 Msa0642980:exon
AATCAAATAATCATGCCTCT+GGG 0.539339 4_3:-45324022 Msa0642980:CDS
TGGAGCTTGAGTTAGAAGGA+AGG 0.539812 4_3:+45327592 None:intergenic
ATGAGGCCTACAAGATTCAC+TGG 0.543583 4_3:-45324046 Msa0642980:CDS
AATAAGCATGTTGGTGATGG+AGG 0.543677 4_3:+45327762 None:intergenic
TTTGACAGAGTTCCTTTCAA+AGG 0.544138 4_3:-45326100 Msa0642980:CDS
TTGATAAGCATCTAGATTCA+GGG 0.546019 4_3:-45327139 Msa0642980:CDS
CGGAAACCAGAAGGCACCAA+TGG 0.546575 4_3:+45323425 None:intergenic
GTAACTGCTTCTGGAGAACC+AGG 0.547189 4_3:+45322937 None:intergenic
AATCTTGTAGGCCTCATCCC+TGG 0.549464 4_3:+45324052 None:intergenic
ACAAACTGAGCAGCAGCAGT+TGG 0.550292 4_3:+45325020 None:intergenic
CTAAAGCAAATCATCTTGAA+AGG 0.550660 4_3:-45321924 Msa0642980:three_prime_UTR
CAGTTCCTGTAGCCTTTGAA+AGG 0.551448 4_3:+45326088 None:intergenic
AACAAGTTGAAGCATTGGAA+AGG 0.552407 4_3:-45327094 Msa0642980:CDS
AGGATGCCGTGAATACAAAC+CGG 0.553865 4_3:-45323209 Msa0642980:CDS
AAGTTGTCTTTGTCCTAGGA+AGG 0.553870 4_3:+45327654 None:intergenic
ATGGTTCCTCCATTTCCGGC+AGG 0.554780 4_3:+45325348 None:intergenic
CTGACGTCAAATCCAGTGTC+CGG 0.556266 4_3:+45323190 None:intergenic
AACAGCATAAAATCGCGTCC+TGG 0.557589 4_3:+45322714 None:intergenic
TTATGAATCACCAAAGGTGG+TGG 0.558033 4_3:-45324794 Msa0642980:CDS
TTGATTTCTAGCATTCACAT+TGG 0.558556 4_3:+45322148 None:intergenic
GAAACAACTGTGGCATCACC+AGG 0.558649 4_3:-45322732 Msa0642980:CDS
TTTGCAGAACGTTCCTCCTG+CGG 0.558703 4_3:-45324173 Msa0642980:intron
GGACTGATGAGAACGCTGTT+GGG 0.559056 4_3:-45323502 Msa0642980:CDS
TCTTCTTGCAGATATGTAGT+GGG 0.559916 4_3:-45323523 Msa0642980:intron
AATGGAATCAATAAAAGAGA+AGG 0.560120 4_3:+45327507 None:intergenic
ATGGAATCAATAAAAGAGAA+GGG 0.560824 4_3:+45327508 None:intergenic
GCGATTTCACAAAGTTGTAG+TGG 0.563887 4_3:-45325608 Msa0642980:CDS
TGTAGGCCTCATCCCTGGAT+AGG 0.565752 4_3:+45324057 None:intergenic
GTTCCCAGATGATGCTCCAT+TGG 0.566789 4_3:-45323441 Msa0642980:CDS
TCCTGCTTTCAGTGATGCAG+CGG 0.568391 4_3:+45324087 None:intergenic
GGTCGAATCAAGTAGCCACT+CGG 0.568475 4_3:+45324981 None:intergenic
TAATAGTGAACTTACTGCAA+TGG 0.570234 4_3:+45324759 None:intergenic
ATTTGACGAGTCTGGTCGCA+AGG 0.571396 4_3:-45322458 Msa0642980:CDS
TCCGCTGCATCACTGAAAGC+AGG 0.573762 4_3:-45324088 Msa0642980:CDS
AAAGTTTGGCACCAACAGCT+GGG 0.574992 4_3:+45322962 None:intergenic
TTCACAAAGTTGTAGTGGAG+TGG 0.575629 4_3:-45325603 Msa0642980:CDS
AAATCAATGATAAATTTGAA+GGG 0.577191 4_3:-45322132 Msa0642980:three_prime_UTR
GAACACAATTGAACATGAAG+AGG 0.579319 4_3:-45323999 Msa0642980:intron
CCTCATCCCTGGATAGGCAT+AGG 0.580110 4_3:+45324063 None:intergenic
CATTCAGCCAAAGATTGAGC+AGG 0.580203 4_3:-45324582 Msa0642980:intron
ATGTTTCCTGCCGGAAATGG+AGG 0.580359 4_3:-45325354 Msa0642980:CDS
TCCGGTATAAACCCAGCTGT+TGG 0.580698 4_3:-45322973 Msa0642980:CDS
GCACCAATGGAGCATCATCT+GGG 0.585521 4_3:+45323438 None:intergenic
CGTACGAGCAAGCTATTGCA+TGG 0.586855 4_3:-45322248 Msa0642980:CDS
TAGAGAGAAGCAAAGAAAAG+AGG 0.587959 4_3:-45326847 Msa0642980:CDS
CATTGAGCTTATTTATACAC+AGG 0.589032 4_3:-45325328 Msa0642980:intron
AGTTCCCTCACATTGCTTGG+AGG 0.589621 4_3:-45324302 Msa0642980:CDS
GTAAATGGATTCAGTGATGA+TGG 0.590567 4_3:-45324413 Msa0642980:CDS
GTGAACCCAACGACAACTCA+CGG 0.590708 4_3:-45323159 Msa0642980:CDS
CGTGAATACAAACCGGACAC+TGG 0.591523 4_3:-45323202 Msa0642980:CDS
ATTCGACCATGTGATGGTGG+AGG 0.591654 4_3:-45324966 Msa0642980:CDS
GAGTTGTTTCCAACATGTCA+AGG 0.591719 4_3:+45322515 None:intergenic
AACGACGCTAGCTCCTGCCC+GGG 0.593425 4_3:-45325220 Msa0642980:CDS
GGGACTGATGAGAACGCTGT+TGG 0.594775 4_3:-45323503 Msa0642980:CDS
AGGTTTGGTTCCAAAATCGA+AGG 0.597184 4_3:-45326977 Msa0642980:intron
AGAGTCCAGAAATCCCGGGC+AGG 0.597452 4_3:+45325207 None:intergenic
TGGTCTATACTGAACTGTGA+TGG 0.602711 4_3:-45324389 Msa0642980:CDS
TTGCAGACTCCTATCAATTG+CGG 0.602778 4_3:-45326130 Msa0642980:intron
CATATAGAAAGTAGTAGTAG+TGG 0.603914 4_3:-45327170 Msa0642980:CDS
GAGATGCTACTAACCCTGCT+GGG 0.605907 4_3:-45326239 Msa0642980:intron
AGAAAGCGAACCAAAACCGC+AGG 0.606717 4_3:+45324157 None:intergenic
GTCGAATCAAGTAGCCACTC+GGG 0.608954 4_3:+45324982 None:intergenic
TGATTTGCAAATACGAACAC+CGG 0.610151 4_3:+45322544 None:intergenic
AGTACTTCTGGCACACTCCA+CGG 0.612200 4_3:+45324826 None:intergenic
AATCAATGATAAATTTGAAG+GGG 0.612658 4_3:-45322131 Msa0642980:three_prime_UTR
AATTAACAAGTTGTTGATGG+AGG 0.614363 4_3:-45326787 Msa0642980:CDS
GGGATGATGCGGAAACCAGA+AGG 0.615520 4_3:+45323416 None:intergenic
ATCAAATAATCATGCCTCTG+GGG 0.615769 4_3:-45324021 Msa0642980:CDS
TCAGGAATCGAGTGGTGAAG+TGG 0.617819 4_3:-45324641 Msa0642980:CDS
GCCAGTGCCAGAACCAGACA+GGG 0.617845 4_3:+45325049 None:intergenic
TTGAATCTAATGGGATGATG+CGG 0.619863 4_3:+45323405 None:intergenic
GCATCTCTCTTAGAATTCTG+AGG 0.619916 4_3:+45326255 None:intergenic
AAGCGAACCAAAACCGCAGG+AGG 0.620397 4_3:+45324160 None:intergenic
GAATTCCTCCAAGCAATGTG+AGG 0.621910 4_3:+45324297 None:intergenic
CAGGAACCTATGCCTATCCA+GGG 0.626828 4_3:-45324069 Msa0642980:CDS
CCTATGCCTATCCAGGGATG+AGG 0.627418 4_3:-45324063 Msa0642980:CDS
ATGGATTCAGTGATGATGGT+TGG 0.628950 4_3:-45324409 Msa0642980:CDS
TACACTACAACTTTGGACAA+TGG 0.630488 4_3:-45325180 Msa0642980:CDS
CAGACTCCTATCAATTGCGG+AGG 0.631681 4_3:-45326127 Msa0642980:CDS
TGTTAGTTTAGAACCTACAA+AGG 0.632221 4_3:-45325561 Msa0642980:intron
TACTTGATTCGACCATGTGA+TGG 0.633229 4_3:-45324972 Msa0642980:CDS
TGTGGGAAGAAACATGGCTA+TGG 0.633966 4_3:-45327210 Msa0642980:exon
TTGGTGATGGAGGAAAAGAA+AGG 0.634397 4_3:+45327772 None:intergenic
AATTCCTCCAAGCAATGTGA+GGG 0.636010 4_3:+45324298 None:intergenic
ACTGAACTGTGATGGTGCTG+AGG 0.636112 4_3:-45324381 Msa0642980:CDS
GGAGTGGCAGCTCGAGCTTG+CGG 0.638597 4_3:-45325587 Msa0642980:CDS
TTTGGACAATGGCAGTCTTG+TGG 0.639500 4_3:-45325169 Msa0642980:intron
TCTAAGAGTCCAGAAATCCC+GGG 0.642124 4_3:+45325203 None:intergenic
GATTTAAGTGGTCTACAATG+TGG 0.642422 4_3:+45324934 None:intergenic
ACCGGACGGAGAAATGGCCA+TGG 0.644894 4_3:+45322990 None:intergenic
TGTTCAATTGTGTTCCCCAG+AGG 0.648149 4_3:+45324007 None:intergenic
ATTGAACCTCCACCATCACA+TGG 0.648754 4_3:+45324960 None:intergenic
TTGATTCGACCATGTGATGG+TGG 0.653641 4_3:-45324969 Msa0642980:CDS
ACTTTATGAATCACCAAAGG+TGG 0.655976 4_3:-45324797 Msa0642980:CDS
AGCTTTACAAGACATCACAT+TGG 0.658238 4_3:-45322488 Msa0642980:CDS
TCTGCATGTCGACAATGGGG+CGG 0.660182 4_3:-45322278 Msa0642980:CDS
GCTGTCAAAAGGGAACTGAA+AGG 0.661239 4_3:+45323086 None:intergenic
GAATCAATAAAAGAGAAGGG+TGG 0.666901 4_3:+45327511 None:intergenic
GTGTTGTGTGGGAAGAAACA+TGG 0.667868 4_3:-45327216 Msa0642980:exon
ACAGCTGGGTTTATACCGGA+CGG 0.670270 4_3:+45322976 None:intergenic
GGATCTGCATGTCGACAATG+GGG 0.672158 4_3:-45322281 Msa0642980:CDS
AGCTCAGATATCAAGCAACA+TGG 0.673318 4_3:+45327846 None:intergenic
ACCACTTTATGAATCACCAA+AGG 0.678609 4_3:-45324800 Msa0642980:CDS
CAAATAGCTCAGGAATCGAG+TGG 0.680372 4_3:-45324649 Msa0642980:CDS
AGAGCTGAAATGCTCCCGAG+TGG 0.713532 4_3:-45324996 Msa0642980:CDS
TGAAATCAGCCCATTCTGAG+CGG 0.726689 4_3:+45324125 None:intergenic
ACTTGATGCTGAAACAACTG+TGG 0.757022 4_3:-45322742 Msa0642980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTGTTATATGTTTTAA+AGG + chr4_3:45322315-45322334 None:intergenic 10.0%
!!! AAAATGTACAAAAACATTTT+CGG + chr4_3:45321901-45321920 None:intergenic 15.0%
!!! TTATATGTTTTAAAGGTTAA+TGG + chr4_3:45322308-45322327 None:intergenic 15.0%
!!! ATATTAATGGATATTGTATT+TGG - chr4_3:45323449-45323468 Msa0642980:CDS 15.0%
!! ATAATTTAGTAGAAAAAACT+TGG + chr4_3:45324108-45324127 None:intergenic 15.0%
!!! TGATTTTTATATCAGTTTTT+TGG - chr4_3:45325315-45325334 Msa0642980:intron 15.0%
!! TCAATAATTTATCAATAGTA+AGG + chr4_3:45326073-45326092 None:intergenic 15.0%
!! TAAACAAATATGATCAATAT+AGG - chr4_3:45326222-45326241 Msa0642980:intron 15.0%
!! AAATCAATGATAAATTTGAA+GGG - chr4_3:45327662-45327681 Msa0642980:five_prime_UTR 15.0%
!! GAATTAATCTTGTAAATTAT+TGG - chr4_3:45327763-45327782 Msa0642980:five_prime_UTR 15.0%
!! ATAGAATATGACAAGTTTAA+GGG + chr4_3:45322483-45322502 None:intergenic 20.0%
!! ATTGAATTCTAGCATTAAAT+TGG + chr4_3:45323224-45323243 None:intergenic 20.0%
!! AATATAGTAATCAATTGTAG+AGG + chr4_3:45323254-45323273 None:intergenic 20.0%
!! TACACAATAGAAAAAGAATT+AGG + chr4_3:45323639-45323658 None:intergenic 20.0%
!!! ATATACTTTAGAGACTTTAT+TGG + chr4_3:45323839-45323858 None:intergenic 20.0%
!! TACTTAAAGAACTAAAATGA+AGG - chr4_3:45323921-45323940 Msa0642980:intron 20.0%
!! TTAAAGACAATTGAAATTAG+TGG - chr4_3:45324016-45324035 Msa0642980:CDS 20.0%
!! TATCGGTAATATATTATCTT+CGG - chr4_3:45326137-45326156 Msa0642980:intron 20.0%
!! TATATTATCTTCGGTAAAAA+TGG - chr4_3:45326146-45326165 Msa0642980:intron 20.0%
!!! ATGTTACTATTTTCTGTTTT+AGG - chr4_3:45326553-45326572 Msa0642980:intron 20.0%
!!! TGTTACTATTTTCTGTTTTA+GGG - chr4_3:45326554-45326573 Msa0642980:intron 20.0%
!! TGTAATTCTATTTCATTGTA+CGG - chr4_3:45327118-45327137 Msa0642980:CDS 20.0%
!! GAAATCAATGATAAATTTGA+AGG - chr4_3:45327661-45327680 Msa0642980:five_prime_UTR 20.0%
!! AATCAATGATAAATTTGAAG+GGG - chr4_3:45327663-45327682 Msa0642980:five_prime_UTR 20.0%
!! AATCTAATTAAATGCAAACT+TGG + chr4_3:45327715-45327734 None:intergenic 20.0%
!! TTTACAAGATTAATTCAACT+TGG + chr4_3:45327759-45327778 None:intergenic 20.0%
! AAAAACCTTAATAAGCATGT+TGG + chr4_3:45322044-45322063 None:intergenic 25.0%
! CAAGATAAGTTTGAATGAAA+TGG + chr4_3:45322225-45322244 None:intergenic 25.0%
! ATGGAATCAATAAAAGAGAA+GGG + chr4_3:45322289-45322308 None:intergenic 25.0%
! AATGGAATCAATAAAAGAGA+AGG + chr4_3:45322290-45322309 None:intergenic 25.0%
! AAGAAGAAAAAAAACCATCT+TGG - chr4_3:45322337-45322356 Msa0642980:intron 25.0%
! AAAGTTGAAGTGAAAAAAGA+AGG - chr4_3:45322389-45322408 Msa0642980:intron 25.0%
! AGAAAATGAACAAGAAAGTT+TGG + chr4_3:45322432-45322451 None:intergenic 25.0%
! GTTTAAGGGAAAATGAAAAT+GGG + chr4_3:45322469-45322488 None:intergenic 25.0%
! AGTTTAAGGGAAAATGAAAA+TGG + chr4_3:45322470-45322489 None:intergenic 25.0%
! GATAGAATATGACAAGTTTA+AGG + chr4_3:45322484-45322503 None:intergenic 25.0%
! TCAAGATAAATGAAAGTTCT+TGG + chr4_3:45322551-45322570 None:intergenic 25.0%
! AAGAACTTTCATTTATCTTG+AGG - chr4_3:45322550-45322569 Msa0642980:CDS 25.0%
!! ATTTTCAATACCTTCGATTT+TGG + chr4_3:45322830-45322849 None:intergenic 25.0%
!!! ATCGAAGGTATTGAAAATTT+TGG - chr4_3:45322832-45322851 Msa0642980:intron 25.0%
! TTTAAAAGTTTGAGCTTCAT+TGG - chr4_3:45322857-45322876 Msa0642980:intron 25.0%
!!! TGTCATAATTCTACTTTTCA+TGG - chr4_3:45323129-45323148 Msa0642980:CDS 25.0%
!!! AGAATTGATTTTGACATGTT+TGG - chr4_3:45323176-45323195 Msa0642980:CDS 25.0%
!!! TTGGTTTGTTAAATTGATTC+AGG + chr4_3:45323365-45323384 None:intergenic 25.0%
!!! GATTTTTTTTTCTGTCTTGA+AGG - chr4_3:45323610-45323629 Msa0642980:intron 25.0%
!!! TTTTAGTCTTTGCCATTAAA+AGG - chr4_3:45323870-45323889 Msa0642980:intron 25.0%
! GAAGGATTTGATATTCTTTA+AGG - chr4_3:45323939-45323958 Msa0642980:intron 25.0%
!!! GTATACATTTGTTATTCTCT+TGG - chr4_3:45324132-45324151 Msa0642980:CDS 25.0%
!! TTACATCTTATTTGGAAGTA+TGG + chr4_3:45324265-45324284 None:intergenic 25.0%
!!! AGTTTGTTGACTAATGTTAT+TGG - chr4_3:45325089-45325108 Msa0642980:intron 25.0%
! TAAAAACTAACATCCCAAAA+CGG + chr4_3:45325591-45325610 None:intergenic 25.0%
!! AATGAAGATTTAACTTCATC+AGG + chr4_3:45325959-45325978 None:intergenic 25.0%
! TATGTAAGAAGAGGTTAATA+GGG + chr4_3:45326103-45326122 None:intergenic 25.0%
! TTATGTAAGAAGAGGTTAAT+AGG + chr4_3:45326104-45326123 None:intergenic 25.0%
! TAATATATTACCGATAGATC+TGG + chr4_3:45326133-45326152 None:intergenic 25.0%
!!! TAACTGGTTTTGAATCTAAT+GGG + chr4_3:45326401-45326420 None:intergenic 25.0%
!!! TTAACTGGTTTTGAATCTAA+TGG + chr4_3:45326402-45326421 None:intergenic 25.0%
!! ACACTTAATTTGAGTAAATC+AGG + chr4_3:45326476-45326495 None:intergenic 25.0%
!!! GTTACTATTTTCTGTTTTAG+GGG - chr4_3:45326555-45326574 Msa0642980:intron 25.0%
!!! TTACTATTTTCTGTTTTAGG+GGG - chr4_3:45326556-45326575 Msa0642980:intron 25.0%
!!! CTTTTCTGAAAAAAGTCTAA+TGG - chr4_3:45326960-45326979 Msa0642980:intron 25.0%
! CCAAATAGTAACTGATTAAA+GGG + chr4_3:45326996-45327015 None:intergenic 25.0%
! CCTTTAATCAGTTACTATTT+GGG - chr4_3:45326994-45327013 Msa0642980:CDS 25.0%
! CTTTAATCAGTTACTATTTG+GGG - chr4_3:45326995-45327014 Msa0642980:CDS 25.0%
!! GATTAATGTGATTTTCTGTT+TGG - chr4_3:45327213-45327232 Msa0642980:exon 25.0%
! TAGCTTTCTCTTTCATAAAT+TGG - chr4_3:45327606-45327625 Msa0642980:five_prime_UTR 25.0%
AAAGAAAGGAATGAAGAAGA+AGG + chr4_3:45322011-45322030 None:intergenic 30.0%
CAGTATCAATCAAGAGAAAA+AGG + chr4_3:45322067-45322086 None:intergenic 30.0%
!!! TGTCTTTGTTGCTGTTTTTT+TGG + chr4_3:45322110-45322129 None:intergenic 30.0%
CATATAGAAAGTAGTAGTAG+TGG - chr4_3:45322624-45322643 Msa0642980:intron 30.0%
ATTGATAAGCATCTAGATTC+AGG - chr4_3:45322654-45322673 Msa0642980:intron 30.0%
TTGATAAGCATCTAGATTCA+GGG - chr4_3:45322655-45322674 Msa0642980:intron 30.0%
TAGATTCAGGGAAATATGTT+AGG - chr4_3:45322667-45322686 Msa0642980:intron 30.0%
AATCAATTGTTGTCTTCTCA+TGG + chr4_3:45322754-45322773 None:intergenic 30.0%
!!! TTTTGGTGTTGAATTTTTGC+AGG - chr4_3:45322922-45322941 Msa0642980:CDS 30.0%
TGCAATTAACAAGTTGTTGA+TGG - chr4_3:45323004-45323023 Msa0642980:intron 30.0%
! AATTAACAAGTTGTTGATGG+AGG - chr4_3:45323007-45323026 Msa0642980:intron 30.0%
!! CATAATTCTACTTTTCATGG+AGG - chr4_3:45323132-45323151 Msa0642980:CDS 30.0%
GTAATCAATTGTAGAGGAAA+AGG + chr4_3:45323248-45323267 None:intergenic 30.0%
TCAATTCACTTTGACATGAA+CGG - chr4_3:45323291-45323310 Msa0642980:intron 30.0%
!!! CTTAGTGCATGTTTGTTTTT+TGG + chr4_3:45323412-45323431 None:intergenic 30.0%
AACAAACATGCACTAAGTTA+AGG - chr4_3:45323415-45323434 Msa0642980:CDS 30.0%
ATCCATTAATATCAACTCCA+AGG + chr4_3:45323441-45323460 None:intergenic 30.0%
TTCGTACTAAATTTACAGCA+AGG + chr4_3:45323780-45323799 None:intergenic 30.0%
! TTGGAGAGAGTCATATTTTA+GGG + chr4_3:45323820-45323839 None:intergenic 30.0%
! ATTGGAGAGAGTCATATTTT+AGG + chr4_3:45323821-45323840 None:intergenic 30.0%
TCTTTGCCATTAAAAGGTTA+GGG - chr4_3:45323876-45323895 Msa0642980:intron 30.0%
ACAATTGAAATTAGTGGTCA+TGG - chr4_3:45324022-45324041 Msa0642980:CDS 30.0%
! TGTTAGTTTAGAACCTACAA+AGG - chr4_3:45324233-45324252 Msa0642980:intron 30.0%
! CCACACTTTTACATCTTATT+TGG + chr4_3:45324273-45324292 None:intergenic 30.0%
CCAAATAAGATGTAAAAGTG+TGG - chr4_3:45324270-45324289 Msa0642980:CDS 30.0%
!! GCAATTTTTCTGTCATTTGT+TGG - chr4_3:45324296-45324315 Msa0642980:CDS 30.0%
TCCTTAAAGATCGTTTATCT+TGG - chr4_3:45324384-45324403 Msa0642980:CDS 30.0%
ACCAAGATAAACGATCTTTA+AGG + chr4_3:45324388-45324407 None:intergenic 30.0%
GAAACATTGTGAAAACTTCT+AGG + chr4_3:45324427-45324446 None:intergenic 30.0%
CTGTGTATAAATAAGCTCAA+TGG + chr4_3:45324468-45324487 None:intergenic 30.0%
CATTGAGCTTATTTATACAC+AGG - chr4_3:45324466-45324485 Msa0642980:intron 30.0%
TATGTCTGTAACAAATCTGA+AGG + chr4_3:45324548-45324567 None:intergenic 30.0%
TCTTAGATACACTACAACTT+TGG - chr4_3:45324607-45324626 Msa0642980:CDS 30.0%
! TGGTGAGTATATTTTTCATC+TGG - chr4_3:45324645-45324664 Msa0642980:CDS 30.0%
! TATATTTTTCATCTGGTGCA+TGG - chr4_3:45324652-45324671 Msa0642980:CDS 30.0%
GTCTTACTTCAAGATTTAAG+TGG + chr4_3:45324875-45324894 None:intergenic 30.0%
TAATAGTGAACTTACTGCAA+TGG + chr4_3:45325038-45325057 None:intergenic 30.0%
ATATATTAGGCAAATAGCTC+AGG - chr4_3:45325135-45325154 Msa0642980:intron 30.0%
AGGAAACAAATCATTTCATG+TGG + chr4_3:45325241-45325260 None:intergenic 30.0%
!! GAAATGATTTGTTTCCTTGA+AGG - chr4_3:45325244-45325263 Msa0642980:intron 30.0%
AGAAGAGCTACTTAAATTCT+TGG + chr4_3:45325463-45325482 None:intergenic 30.0%
! ATTTTCAACAGTTACCGTTT+TGG - chr4_3:45325574-45325593 Msa0642980:CDS 30.0%
! TTTTCAACAGTTACCGTTTT+GGG - chr4_3:45325575-45325594 Msa0642980:CDS 30.0%
AATCAAATAATCATGCCTCT+GGG - chr4_3:45325772-45325791 Msa0642980:intron 30.0%
TCAAAATGTCTTTAGTGTTG+TGG - chr4_3:45325852-45325871 Msa0642980:intron 30.0%
GACTCTACATAACATGTTAA+TGG + chr4_3:45325881-45325900 None:intergenic 30.0%
!! AAGAAGATGCTTTTGTTTCT+AGG - chr4_3:45326023-45326042 Msa0642980:intron 30.0%
!!! AGAAGATGCTTTTGTTTCTA+GGG - chr4_3:45326024-45326043 Msa0642980:intron 30.0%
CATACAAGAAATCATTTCGT+CGG + chr4_3:45326185-45326204 None:intergenic 30.0%
TGATTTCTTGTATGTAGTTG+TGG - chr4_3:45326191-45326210 Msa0642980:intron 30.0%
ATCAATATAGGTATGTACTG+AGG - chr4_3:45326234-45326253 Msa0642980:intron 30.0%
CAATAGAGAGGAAAAAAGAA+GGG + chr4_3:45326433-45326452 None:intergenic 30.0%
TCAATAGAGAGGAAAAAAGA+AGG + chr4_3:45326434-45326453 None:intergenic 30.0%
GAAAAATTAGCTCAATAGAG+AGG + chr4_3:45326445-45326464 None:intergenic 30.0%
TCAAATTAAGTGTCTTCCTA+TGG - chr4_3:45326483-45326502 Msa0642980:intron 30.0%
GCAAGATAATGTTGTAATCA+TGG - chr4_3:45326736-45326755 Msa0642980:intron 30.0%
CCCTTTAATCAGTTACTATT+TGG - chr4_3:45326993-45327012 Msa0642980:CDS 30.0%
CCCAAATAGTAACTGATTAA+AGG + chr4_3:45326997-45327016 None:intergenic 30.0%
! GATTTTATGCTGTTCATTGA+AGG - chr4_3:45327089-45327108 Msa0642980:CDS 30.0%
AATTCTATTTCATTGTACGG+TGG - chr4_3:45327121-45327140 Msa0642980:CDS 30.0%
CTTATGTTTAGAAAGGAAGT+TGG - chr4_3:45327155-45327174 Msa0642980:CDS 30.0%
! AGTTGGAAGGTTTGTAATTT+TGG - chr4_3:45327172-45327191 Msa0642980:CDS 30.0%
ACATTAATCTCGCGTTATAA+AGG + chr4_3:45327202-45327221 None:intergenic 30.0%
GATAAAATATTTGACGAGTC+TGG - chr4_3:45327328-45327347 Msa0642980:five_prime_UTR 30.0%
! GCATTATTCATGTTAAGTTG+TGG + chr4_3:45327404-45327423 None:intergenic 30.0%
AAGTCGTGTATACTTTGATT+AGG - chr4_3:45327469-45327488 Msa0642980:five_prime_UTR 30.0%
AGTCGTGTATACTTTGATTA+GGG - chr4_3:45327470-45327489 Msa0642980:five_prime_UTR 30.0%
!! TTGATTTCTAGCATTCACAT+TGG + chr4_3:45327649-45327668 None:intergenic 30.0%
AAATTTGAAGGGGAAAAATC+AGG - chr4_3:45327673-45327692 Msa0642980:five_prime_UTR 30.0%
CTAAAGCAAATCATCTTGAA+AGG - chr4_3:45327870-45327889 Msa0642980:five_prime_UTR 30.0%
! CTTAATAAGCATGTTGGTGA+TGG + chr4_3:45322038-45322057 None:intergenic 35.0%
CATCACCAACATGCTTATTA+AGG - chr4_3:45322036-45322055 Msa0642980:three_prime_UTR 35.0%
ACAAGACTATATTCCTTCCT+AGG - chr4_3:45322127-45322146 Msa0642980:three_prime_UTR 35.0%
GAATCAATAAAAGAGAAGGG+TGG + chr4_3:45322286-45322305 None:intergenic 35.0%
AAAAACCATCTTGGTTCACA+AGG - chr4_3:45322346-45322365 Msa0642980:intron 35.0%
ATAGAAAGTAGTAGTAGTGG+TGG - chr4_3:45322627-45322646 Msa0642980:intron 35.0%
! TACTGAACAAGTTGAAGCAT+TGG - chr4_3:45322695-45322714 Msa0642980:intron 35.0%
!! AACAAGTTGAAGCATTGGAA+AGG - chr4_3:45322700-45322719 Msa0642980:intron 35.0%
!! ACAAGTTGAAGCATTGGAAA+GGG - chr4_3:45322701-45322720 Msa0642980:intron 35.0%
GGTTCAATGTTGGAAAGAAT+AGG + chr4_3:45322786-45322805 None:intergenic 35.0%
! GATCTGTTTAGGTTCAATGT+TGG + chr4_3:45322796-45322815 None:intergenic 35.0%
CATTGAACCTAAACAGATCA+AGG - chr4_3:45322797-45322816 Msa0642980:intron 35.0%
AACCTAAACAGATCAAGGTT+TGG - chr4_3:45322802-45322821 Msa0642980:intron 35.0%
AACCAAACCTTGATCTGTTT+AGG + chr4_3:45322807-45322826 None:intergenic 35.0%
TAGAGAGAAGCAAAGAAAAG+AGG - chr4_3:45322947-45322966 Msa0642980:CDS 35.0%
! TGTTGATGGAGGAAAATGAT+AGG - chr4_3:45323018-45323037 Msa0642980:intron 35.0%
! TGTGTGAGAATGGATTTATG+AGG - chr4_3:45323066-45323085 Msa0642980:CDS 35.0%
TACTGATGCAAGTTGTGATT+CGG - chr4_3:45323505-45323524 Msa0642980:CDS 35.0%
TTTGACAGAGTTCCTTTCAA+AGG - chr4_3:45323694-45323713 Msa0642980:intron 35.0%
GTCTTTGCCATTAAAAGGTT+AGG - chr4_3:45323875-45323894 Msa0642980:intron 35.0%
! GTTAGTCCCTAACCTTTTAA+TGG + chr4_3:45323885-45323904 None:intergenic 35.0%
! AATTAGTGGTCATGGCTTTT+AGG - chr4_3:45324030-45324049 Msa0642980:CDS 35.0%
!! CTATGCCGATTTGAAAATGA+AGG - chr4_3:45324082-45324101 Msa0642980:CDS 35.0%
!! CTTGGCCTTCATTTTCAAAT+CGG + chr4_3:45324090-45324109 None:intergenic 35.0%
AGTATGGAATCTACCTTTGT+AGG + chr4_3:45324249-45324268 None:intergenic 35.0%
TACACTACAACTTTGGACAA+TGG - chr4_3:45324614-45324633 Msa0642980:CDS 35.0%
ATCTGGTGCATGGTAATAAA+AGG - chr4_3:45324662-45324681 Msa0642980:CDS 35.0%
!! GCATTTGATTCCACTTTTGA+AGG - chr4_3:45324710-45324729 Msa0642980:intron 35.0%
GATTTAAGTGGTCTACAATG+TGG + chr4_3:45324863-45324882 None:intergenic 35.0%
ACCACTTTATGAATCACCAA+AGG - chr4_3:45324994-45325013 Msa0642980:CDS 35.0%
! ACCTTTGGTGATTCATAAAG+TGG + chr4_3:45324998-45325017 None:intergenic 35.0%
ACTTTATGAATCACCAAAGG+TGG - chr4_3:45324997-45325016 Msa0642980:CDS 35.0%
!! TTATTGGTGCCTTTTGTGAT+AGG - chr4_3:45325105-45325124 Msa0642980:intron 35.0%
GATAGGCACTTCGATATATT+AGG - chr4_3:45325122-45325141 Msa0642980:intron 35.0%
! GTAAATGGATTCAGTGATGA+TGG - chr4_3:45325381-45325400 Msa0642980:CDS 35.0%
CAATCAAATAATCATGCCTC+TGG - chr4_3:45325771-45325790 Msa0642980:intron 35.0%
ATCAAATAATCATGCCTCTG+GGG - chr4_3:45325773-45325792 Msa0642980:intron 35.0%
GAACACAATTGAACATGAAG+AGG - chr4_3:45325795-45325814 Msa0642980:intron 35.0%
TGCAGATGCTTGAAGTTATT+AGG - chr4_3:45325978-45325997 Msa0642980:intron 35.0%
CTTGAAGTTATTAGGCTTGA+AGG - chr4_3:45325986-45326005 Msa0642980:intron 35.0%
TAGGGATATTCATCTGTTAC+AGG - chr4_3:45326042-45326061 Msa0642980:intron 35.0%
TTCTTCTTGCAGATATGTAG+TGG - chr4_3:45326270-45326289 Msa0642980:CDS 35.0%
TCTTCTTGCAGATATGTAGT+GGG - chr4_3:45326271-45326290 Msa0642980:CDS 35.0%
TCTGGGAACATTTCATCAAT+TGG + chr4_3:45326342-45326361 None:intergenic 35.0%
TTGAATCTAATGGGATGATG+CGG + chr4_3:45326392-45326411 None:intergenic 35.0%
AGAAGGGAACAAAACTTAAC+TGG + chr4_3:45326417-45326436 None:intergenic 35.0%
AATTAAGTGTCTTCCTATGG+CGG - chr4_3:45326486-45326505 Msa0642980:intron 35.0%
AATCAGTTACTATTTGGGGA+CGG - chr4_3:45326999-45327018 Msa0642980:CDS 35.0%
TATGCTGTTCATTGAAGGTA+TGG - chr4_3:45327094-45327113 Msa0642980:CDS 35.0%
GGTGGTTCTTATGTTTAGAA+AGG - chr4_3:45327148-45327167 Msa0642980:CDS 35.0%
TGTTTAGAAAGGAAGTTGGA+AGG - chr4_3:45327159-45327178 Msa0642980:CDS 35.0%
! TGATTTGCAAATACGAACAC+CGG + chr4_3:45327253-45327272 None:intergenic 35.0%
TTCGTATTTGCAAATCAAGC+TGG - chr4_3:45327256-45327275 Msa0642980:five_prime_UTR 35.0%
AGCTTTACAAGACATCACAT+TGG - chr4_3:45327306-45327325 Msa0642980:five_prime_UTR 35.0%
GTCGTGTATACTTTGATTAG+GGG - chr4_3:45327471-45327490 Msa0642980:five_prime_UTR 35.0%
CAATGAACAGTGTTATCTTC+TGG + chr4_3:45327584-45327603 None:intergenic 35.0%
! TTAGCACTGTCTAGTTTGAA+AGG - chr4_3:45327834-45327853 Msa0642980:five_prime_UTR 35.0%
AGCTCAGATATCAAGCAACA+TGG + chr4_3:45321951-45321970 None:intergenic 40.0%
!! TTGGTGATGGAGGAAAAGAA+AGG + chr4_3:45322025-45322044 None:intergenic 40.0%
!! AATAAGCATGTTGGTGATGG+AGG + chr4_3:45322035-45322054 None:intergenic 40.0%
AAGTTGTCTTTGTCCTAGGA+AGG + chr4_3:45322143-45322162 None:intergenic 40.0%
AGTGAAGTTGTCTTTGTCCT+AGG + chr4_3:45322147-45322166 None:intergenic 40.0%
GAAATGGAGCTTGAGTTAGA+AGG + chr4_3:45322209-45322228 None:intergenic 40.0%
CATTACCTTGTGAACCAAGA+TGG + chr4_3:45322354-45322373 None:intergenic 40.0%
CATCTTGGTTCACAAGGTAA+TGG - chr4_3:45322352-45322371 Msa0642980:intron 40.0%
TTGAGGTTTGTGTGTTGTGT+GGG - chr4_3:45322567-45322586 Msa0642980:intron 40.0%
AAGAAACATGGCTATGGCTA+TGG - chr4_3:45322590-45322609 Msa0642980:intron 40.0%
TGTTGTCTTCTCATGGAACT+AGG + chr4_3:45322747-45322766 None:intergenic 40.0%
! AGGTTTGGTTCCAAAATCGA+AGG - chr4_3:45322817-45322836 Msa0642980:intron 40.0%
AGCAAAGAAAAGAGGCTTCA+AGG - chr4_3:45322955-45322974 Msa0642980:CDS 40.0%
CAAGGCTTCAAACTGTGAAT+AGG - chr4_3:45322973-45322992 Msa0642980:CDS 40.0%
TTGCATACTGTAAGTGTGTG+AGG - chr4_3:45323095-45323114 Msa0642980:CDS 40.0%
!! GGCCTTGGAGTTGATATTAA+TGG - chr4_3:45323436-45323455 Msa0642980:CDS 40.0%
GCATCTCTCTTAGAATTCTG+AGG + chr4_3:45323542-45323561 None:intergenic 40.0%
! AACCCTGCTGGGTAATTTTT+AGG - chr4_3:45323566-45323585 Msa0642980:intron 40.0%
AGCCTAAAAATTACCCAGCA+GGG + chr4_3:45323571-45323590 None:intergenic 40.0%
AAGCCTAAAAATTACCCAGC+AGG + chr4_3:45323572-45323591 None:intergenic 40.0%
TTGCAGACTCCTATCAATTG+CGG - chr4_3:45323664-45323683 Msa0642980:intron 40.0%
! TACAGGAACTGCTGTTGATT+GGG - chr4_3:45323718-45323737 Msa0642980:intron 40.0%
AAATAAGAGACCTTCATCCC+AGG + chr4_3:45323752-45323771 None:intergenic 40.0%
AAGGTTAGGGACTAACATAG+CGG - chr4_3:45323889-45323908 Msa0642980:intron 40.0%
GCGATTTCACAAAGTTGTAG+TGG - chr4_3:45324186-45324205 Msa0642980:intron 40.0%
! TTCACAAAGTTGTAGTGGAG+TGG - chr4_3:45324191-45324210 Msa0642980:intron 40.0%
! GTTTTCACAATGTTTCCTGC+CGG - chr4_3:45324431-45324450 Msa0642980:CDS 40.0%
CAAATCTGAAGGTCACTCAA+AGG + chr4_3:45324537-45324556 None:intergenic 40.0%
ATCTAAGAGTCCAGAAATCC+CGG + chr4_3:45324595-45324614 None:intergenic 40.0%
CTCTCACAAACCTTCAAAAG+TGG + chr4_3:45324723-45324742 None:intergenic 40.0%
!! CACTTTTGAAGGTTTGTGAG+AGG - chr4_3:45324721-45324740 Msa0642980:intron 40.0%
! TACTTGATTCGACCATGTGA+TGG - chr4_3:45324822-45324841 Msa0642980:CDS 40.0%
TTATTCTTGTCTTCTAGCCG+TGG - chr4_3:45324951-45324970 Msa0642980:CDS 40.0%
TAAAGTGGTCGTAGTACTTC+TGG + chr4_3:45324983-45325002 None:intergenic 40.0%
TTATGAATCACCAAAGGTGG+TGG - chr4_3:45325000-45325019 Msa0642980:CDS 40.0%
!!! ATTTTTTGAGCCACCACCTT+TGG + chr4_3:45325013-45325032 None:intergenic 40.0%
! ATCGAAGTGCCTATCACAAA+AGG + chr4_3:45325117-45325136 None:intergenic 40.0%
TCCTTGAAGGTCATATCTGT+CGG - chr4_3:45325257-45325276 Msa0642980:intron 40.0%
CTGATGTATTACATCTGCAG+AGG - chr4_3:45325345-45325364 Msa0642980:CDS 40.0%
!! ATGGATTCAGTGATGATGGT+TGG - chr4_3:45325385-45325404 Msa0642980:CDS 40.0%
TGGTCTATACTGAACTGTGA+TGG - chr4_3:45325405-45325424 Msa0642980:CDS 40.0%
AATTCCTCCAAGCAATGTGA+GGG + chr4_3:45325499-45325518 None:intergenic 40.0%
TGAGTCTTGAGTCAATGTCA+CGG - chr4_3:45325550-45325569 Msa0642980:intron 40.0%
!!! GGTTTTGGTTCGCTTTCTAA+GGG - chr4_3:45325642-45325661 Msa0642980:intron 40.0%
TGATTGCCAGTGAATCTTGT+AGG + chr4_3:45325757-45325776 None:intergenic 40.0%
ATAAGCTGAGCCAGATCTAT+CGG - chr4_3:45326120-45326139 Msa0642980:CDS 40.0%
!!! TCTGTTTTAGGGGGATAAGA+AGG - chr4_3:45326565-45326584 Msa0642980:intron 40.0%
AGGCAATAGTCAACACTGAT+CGG + chr4_3:45326691-45326710 None:intergenic 40.0%
CTTGCATAGTGCTGTCAAAA+GGG + chr4_3:45326721-45326740 None:intergenic 40.0%
TCTTGCATAGTGCTGTCAAA+AGG + chr4_3:45326722-45326741 None:intergenic 40.0%
TGTAGACTTGCCTATAACTC+TGG + chr4_3:45326901-45326920 None:intergenic 40.0%
CTGAGATCAGATTCTCTTGT+TGG - chr4_3:45327027-45327046 Msa0642980:CDS 40.0%
ACTTGATGCTGAAACAACTG+TGG - chr4_3:45327052-45327071 Msa0642980:CDS 40.0%
TCTATTTCATTGTACGGTGG+CGG - chr4_3:45327124-45327143 Msa0642980:CDS 40.0%
! GAGTTGTTTCCAACATGTCA+AGG + chr4_3:45327282-45327301 None:intergenic 40.0%
! TTTTGCCAAGTTAATGCACC+AGG - chr4_3:45327372-45327391 Msa0642980:five_prime_UTR 40.0%
AATCACCTGGTGCATTAACT+TGG + chr4_3:45327380-45327399 None:intergenic 40.0%
! GTTAAGTTGTGGAAATCACC+TGG + chr4_3:45327393-45327412 None:intergenic 40.0%
GAGTGAAGTTGAGACTTGTA+TGG - chr4_3:45327794-45327813 Msa0642980:five_prime_UTR 40.0%
TGGAGCTTGAGTTAGAAGGA+AGG + chr4_3:45322205-45322224 None:intergenic 45.0%
CTTGAGGTTTGTGTGTTGTG+TGG - chr4_3:45322566-45322585 Msa0642980:intron 45.0%
GTGTTGTGTGGGAAGAAACA+TGG - chr4_3:45322578-45322597 Msa0642980:intron 45.0%
TGTGGGAAGAAACATGGCTA+TGG - chr4_3:45322584-45322603 Msa0642980:intron 45.0%
CTTCTCATGGAACTAGGCTT+AGG + chr4_3:45322741-45322760 None:intergenic 45.0%
TCACAGCTTGTGTGTGAGAA+TGG - chr4_3:45323056-45323075 Msa0642980:CDS 45.0%
CATGCACTAAGTTAAGGCCT+TGG - chr4_3:45323421-45323440 Msa0642980:CDS 45.0%
! GCATCAGTATTTGCTGCTGA+TGG + chr4_3:45323494-45323513 None:intergenic 45.0%
AAGTCTCCTCCGCAATTGAT+AGG + chr4_3:45323676-45323695 None:intergenic 45.0%
GAGTTCCTTTCAAAGGCTAC+AGG - chr4_3:45323701-45323720 Msa0642980:intron 45.0%
CAGTTCCTGTAGCCTTTGAA+AGG + chr4_3:45323709-45323728 None:intergenic 45.0%
CTACAGGAACTGCTGTTGAT+TGG - chr4_3:45323717-45323736 Msa0642980:intron 45.0%
TATCTTGGTTTCGCGAGTGT+CGG - chr4_3:45324399-45324418 Msa0642980:CDS 45.0%
ACAATGTTTCCTGCCGGAAA+TGG - chr4_3:45324437-45324456 Msa0642980:intron 45.0%
CTCAATGGTTCCTCCATTTC+CGG + chr4_3:45324453-45324472 None:intergenic 45.0%
TCTAAGAGTCCAGAAATCCC+GGG + chr4_3:45324594-45324613 None:intergenic 45.0%
TTTGGACAATGGCAGTCTTG+TGG - chr4_3:45324625-45324644 Msa0642980:CDS 45.0%
! TTGATTCGACCATGTGATGG+TGG - chr4_3:45324825-45324844 Msa0642980:CDS 45.0%
ATTGAACCTCCACCATCACA+TGG + chr4_3:45324837-45324856 None:intergenic 45.0%
CAAATAGCTCAGGAATCGAG+TGG - chr4_3:45325145-45325164 Msa0642980:intron 45.0%
TCGAGTGGTGAAGTGGTATA+CGG - chr4_3:45325160-45325179 Msa0642980:intron 45.0%
GGTGAAGTGGTATACGGATT+AGG - chr4_3:45325166-45325185 Msa0642980:intron 45.0%
CTGAATGTTCGCAAAACAGC+AGG + chr4_3:45325199-45325218 None:intergenic 45.0%
CATTCAGCCAAAGATTGAGC+AGG - chr4_3:45325212-45325231 Msa0642980:CDS 45.0%
GGCTTCAATGACGCTGTAAA+TGG - chr4_3:45325366-45325385 Msa0642980:CDS 45.0%
GAATTCCTCCAAGCAATGTG+AGG + chr4_3:45325500-45325519 None:intergenic 45.0%
!!! CGGTTTTGGTTCGCTTTCTA+AGG - chr4_3:45325641-45325660 Msa0642980:intron 45.0%
TGAAATCAGCCCATTCTGAG+CGG + chr4_3:45325672-45325691 None:intergenic 45.0%
ATGAGGCCTACAAGATTCAC+TGG - chr4_3:45325748-45325767 Msa0642980:intron 45.0%
TGTTCAATTGTGTTCCCCAG+AGG + chr4_3:45325790-45325809 None:intergenic 45.0%
GGCTCAGCTTATGTAAGAAG+AGG + chr4_3:45326112-45326131 None:intergenic 45.0%
TCATCACATTCATCCGCCAT+AGG + chr4_3:45326502-45326521 None:intergenic 45.0%
GCGGATGAATGTGATGACTT+TGG - chr4_3:45326505-45326524 Msa0642980:intron 45.0%
AGGATGCCGTGAATACAAAC+CGG - chr4_3:45326585-45326604 Msa0642980:intron 45.0%
! CAGTGTCCGGTTTGTATTCA+CGG + chr4_3:45326594-45326613 None:intergenic 45.0%
! TCAACACTGATCGGGTGTTT+TGG + chr4_3:45326682-45326701 None:intergenic 45.0%
GGCAATAGTCAACACTGATC+GGG + chr4_3:45326690-45326709 None:intergenic 45.0%
GCTGTCAAAAGGGAACTGAA+AGG + chr4_3:45326711-45326730 None:intergenic 45.0%
TGTGATTTCCTCTGTGCAGA+GGG - chr4_3:45326778-45326797 Msa0642980:CDS 45.0%
GTTTATACCGGACGGAGAAA+TGG + chr4_3:45326813-45326832 None:intergenic 45.0%
ACCAACAGCTGGGTTTATAC+CGG + chr4_3:45326825-45326844 None:intergenic 45.0%
AAAGTTTGGCACCAACAGCT+GGG + chr4_3:45326835-45326854 None:intergenic 45.0%
TGGAGAACCAGGAGAAAGTT+TGG + chr4_3:45326849-45326868 None:intergenic 45.0%
TGAGCTAGTGTAACTGCTTC+TGG + chr4_3:45326869-45326888 None:intergenic 45.0%
AACAGCATAAAATCGCGTCC+TGG + chr4_3:45327083-45327102 None:intergenic 45.0%
!!! TTTGTTTTTTTTTTTTTTTT+TGG - chr4_3:45322905-45322924 Msa0642980:intron 5.0%
!! AAAATTTATTATAAATGAAT+TGG + chr4_3:45323384-45323403 None:intergenic 5.0%
AGAGATGCTACTAACCCTGC+TGG - chr4_3:45323554-45323573 Msa0642980:intron 50.0%
GAGATGCTACTAACCCTGCT+GGG - chr4_3:45323555-45323574 Msa0642980:intron 50.0%
CAGACTCCTATCAATTGCGG+AGG - chr4_3:45323667-45323686 Msa0642980:intron 50.0%
TTGATTGGGTCCAGATGCCT+GGG - chr4_3:45323732-45323751 Msa0642980:intron 50.0%
TGTTATTCTCTTGGCCAGCC+TGG - chr4_3:45324141-45324160 Msa0642980:CDS 50.0%
GCAAAGATCCCAACCGAATC+CGG + chr4_3:45324168-45324187 None:intergenic 50.0%
ATGTTTCCTGCCGGAAATGG+AGG - chr4_3:45324440-45324459 Msa0642980:intron 50.0%
GAGCAGCAGCAGTTGGATTA+GGG + chr4_3:45324770-45324789 None:intergenic 50.0%
TGAGCAGCAGCAGTTGGATT+AGG + chr4_3:45324771-45324790 None:intergenic 50.0%
ACAAACTGAGCAGCAGCAGT+TGG + chr4_3:45324777-45324796 None:intergenic 50.0%
GTCGAATCAAGTAGCCACTC+GGG + chr4_3:45324815-45324834 None:intergenic 50.0%
GGTCGAATCAAGTAGCCACT+CGG + chr4_3:45324816-45324835 None:intergenic 50.0%
!! ATTCGACCATGTGATGGTGG+AGG - chr4_3:45324828-45324847 Msa0642980:CDS 50.0%
AGTACTTCTGGCACACTCCA+CGG + chr4_3:45324971-45324990 None:intergenic 50.0%
TCAGGAATCGAGTGGTGAAG+TGG - chr4_3:45325153-45325172 Msa0642980:intron 50.0%
GTGGCTACCTGCTCAATCTT+TGG + chr4_3:45325222-45325241 None:intergenic 50.0%
GCCGACAGATATGACCTTCA+AGG + chr4_3:45325261-45325280 None:intergenic 50.0%
GTCATATCTGTCGGCAGTTC+TGG - chr4_3:45325266-45325285 Msa0642980:intron 50.0%
! ACTGAACTGTGATGGTGCTG+AGG - chr4_3:45325413-45325432 Msa0642980:CDS 50.0%
AGCAATGTGAGGGAACTTGC+TGG + chr4_3:45325489-45325508 None:intergenic 50.0%
GCAAGTTCCCTCACATTGCT+TGG - chr4_3:45325489-45325508 Msa0642980:intron 50.0%
AGTTCCCTCACATTGCTTGG+AGG - chr4_3:45325492-45325511 Msa0642980:intron 50.0%
TTTGCAGAACGTTCCTCCTG+CGG - chr4_3:45325621-45325640 Msa0642980:CDS 50.0%
AGAAAGCGAACCAAAACCGC+AGG + chr4_3:45325640-45325659 None:intergenic 50.0%
TCCTGCTTTCAGTGATGCAG+CGG + chr4_3:45325710-45325729 None:intergenic 50.0%
CAGGAACCTATGCCTATCCA+GGG - chr4_3:45325725-45325744 Msa0642980:intron 50.0%
AATCTTGTAGGCCTCATCCC+TGG + chr4_3:45325745-45325764 None:intergenic 50.0%
GGACTGATGAGAACGCTGTT+GGG - chr4_3:45326292-45326311 Msa0642980:CDS 50.0%
GTTCCCAGATGATGCTCCAT+TGG - chr4_3:45326353-45326372 Msa0642980:intron 50.0%
! GCACCAATGGAGCATCATCT+GGG + chr4_3:45326359-45326378 None:intergenic 50.0%
CGTGAATACAAACCGGACAC+TGG - chr4_3:45326592-45326611 Msa0642980:intron 50.0%
CTGACGTCAAATCCAGTGTC+CGG + chr4_3:45326607-45326626 None:intergenic 50.0%
GTGAACCCAACGACAACTCA+CGG - chr4_3:45326635-45326654 Msa0642980:intron 50.0%
GTGTGATTTCCTCTGTGCAG+AGG - chr4_3:45326777-45326796 Msa0642980:CDS 50.0%
ACAGCTGGGTTTATACCGGA+CGG + chr4_3:45326821-45326840 None:intergenic 50.0%
TCCGGTATAAACCCAGCTGT+TGG - chr4_3:45326821-45326840 Msa0642980:CDS 50.0%
GAAAGTTTGGCACCAACAGC+TGG + chr4_3:45326836-45326855 None:intergenic 50.0%
!! GTTGGTGCCAAACTTTCTCC+TGG - chr4_3:45326839-45326858 Msa0642980:CDS 50.0%
! GTAACTGCTTCTGGAGAACC+AGG + chr4_3:45326860-45326879 None:intergenic 50.0%
GAAACAACTGTGGCATCACC+AGG - chr4_3:45327062-45327081 Msa0642980:CDS 50.0%
! ATTTCATTGTACGGTGGCGG+AGG - chr4_3:45327127-45327146 Msa0642980:CDS 50.0%
TTTGGTATTGCAGTCGCAGC+CGG - chr4_3:45327231-45327250 Msa0642980:five_prime_UTR 50.0%
!! TCAAGCTGGCCTTGACATGT+TGG - chr4_3:45327270-45327289 Msa0642980:five_prime_UTR 50.0%
ATTTGACGAGTCTGGTCGCA+AGG - chr4_3:45327336-45327355 Msa0642980:five_prime_UTR 50.0%
! GGTTTGCTTATCTGCCAGCT+GGG - chr4_3:45327492-45327511 Msa0642980:five_prime_UTR 50.0%
TGGGATCTGCATGTCGACAA+TGG - chr4_3:45327511-45327530 Msa0642980:five_prime_UTR 50.0%
GGGATCTGCATGTCGACAAT+GGG - chr4_3:45327512-45327531 Msa0642980:five_prime_UTR 50.0%
GGATCTGCATGTCGACAATG+GGG - chr4_3:45327513-45327532 Msa0642980:five_prime_UTR 50.0%
CGTACGAGCAAGCTATTGCA+TGG - chr4_3:45327546-45327565 Msa0642980:five_prime_UTR 50.0%
CATGGCTATGGCTATGGCTG+TGG - chr4_3:45322596-45322615 Msa0642980:intron 55.0%
GTTGATTGGGTCCAGATGCC+TGG - chr4_3:45323731-45323750 Msa0642980:intron 55.0%
AGACCTTCATCCCAGGCATC+TGG + chr4_3:45323745-45323764 None:intergenic 55.0%
ATGGTTCCTCCATTTCCGGC+AGG + chr4_3:45324449-45324468 None:intergenic 55.0%
GTTTGTGAGAGGTCCCTGTC+TGG - chr4_3:45324732-45324751 Msa0642980:intron 55.0%
AGAGCTGAAATGCTCCCGAG+TGG - chr4_3:45324798-45324817 Msa0642980:CDS 55.0%
! GAACGTTCCTCCTGCGGTTT+TGG - chr4_3:45325627-45325646 Msa0642980:CDS 55.0%
AAGCGAACCAAAACCGCAGG+AGG + chr4_3:45325637-45325656 None:intergenic 55.0%
!! TAAGGGAGCACCGCTCAGAA+TGG - chr4_3:45325659-45325678 Msa0642980:intron 55.0%
!! AAGGGAGCACCGCTCAGAAT+GGG - chr4_3:45325660-45325679 Msa0642980:intron 55.0%
TCCGCTGCATCACTGAAAGC+AGG - chr4_3:45325706-45325725 Msa0642980:intron 55.0%
GCAGGAACCTATGCCTATCC+AGG - chr4_3:45325724-45325743 Msa0642980:intron 55.0%
CCTCATCCCTGGATAGGCAT+AGG + chr4_3:45325734-45325753 None:intergenic 55.0%
CCTATGCCTATCCAGGGATG+AGG - chr4_3:45325731-45325750 Msa0642980:intron 55.0%
TGTAGGCCTCATCCCTGGAT+AGG + chr4_3:45325740-45325759 None:intergenic 55.0%
GGGACTGATGAGAACGCTGT+TGG - chr4_3:45326291-45326310 Msa0642980:CDS 55.0%
! GGCACCAATGGAGCATCATC+TGG + chr4_3:45326360-45326379 None:intergenic 55.0%
! GATGCTCCATTGGTGCCTTC+TGG - chr4_3:45326363-45326382 Msa0642980:intron 55.0%
!! CGGAAACCAGAAGGCACCAA+TGG + chr4_3:45326372-45326391 None:intergenic 55.0%
GGGATGATGCGGAAACCAGA+AGG + chr4_3:45326381-45326400 None:intergenic 55.0%
CGGACACTGGATTTGACGTC+AGG - chr4_3:45326605-45326624 Msa0642980:intron 55.0%
CACTGCCGTGAGTTGTCGTT+GGG + chr4_3:45326643-45326662 None:intergenic 55.0%
! GGGTTTGCTTATCTGCCAGC+TGG - chr4_3:45327491-45327510 Msa0642980:five_prime_UTR 55.0%
TCTGCATGTCGACAATGGGG+CGG - chr4_3:45327516-45327535 Msa0642980:five_prime_UTR 55.0%
GGTCCAGATGCCTGGGATGA+AGG - chr4_3:45323739-45323758 Msa0642980:intron 60.0%
TTCTCTTGGCCAGCCTGGTC+CGG - chr4_3:45324146-45324165 Msa0642980:CDS 60.0%
! AGCCTGGTCCGGATTCGGTT+GGG - chr4_3:45324157-45324176 Msa0642980:CDS 60.0%
ATCCCAACCGAATCCGGACC+AGG + chr4_3:45324162-45324181 None:intergenic 60.0%
TAGCTCCTGCCCGGGATTTC+TGG - chr4_3:45324582-45324601 Msa0642980:intron 60.0%
AGAGTCCAGAAATCCCGGGC+AGG + chr4_3:45324590-45324609 None:intergenic 60.0%
! GAGAGGTCCCTGTCTGGTTC+TGG - chr4_3:45324738-45324757 Msa0642980:intron 60.0%
!! TCCCTGTCTGGTTCTGGCAC+TGG - chr4_3:45324744-45324763 Msa0642980:intron 60.0%
GCCAGTGCCAGAACCAGACA+GGG + chr4_3:45324748-45324767 None:intergenic 60.0%
GCACTGCCGTGAGTTGTCGT+TGG + chr4_3:45326644-45326663 None:intergenic 60.0%
CATGGCAACCCTCTGCACAG+AGG + chr4_3:45326789-45326808 None:intergenic 60.0%
CTCTGTGCAGAGGGTTGCCA+TGG - chr4_3:45326787-45326806 Msa0642980:CDS 60.0%
GCCATGGCCATTTCTCCGTC+CGG - chr4_3:45326803-45326822 Msa0642980:CDS 60.0%
ACCGGACGGAGAAATGGCCA+TGG + chr4_3:45326807-45326826 None:intergenic 60.0%
!! TCATTGTACGGTGGCGGAGG+TGG - chr4_3:45327130-45327149 Msa0642980:CDS 60.0%
GTCGACATGCAGATCCCAGC+TGG + chr4_3:45327509-45327528 None:intergenic 60.0%
TGGCCAGCCTGGTCCGGATT+CGG - chr4_3:45324152-45324171 Msa0642980:CDS 65.0%
CAACCGAATCCGGACCAGGC+TGG + chr4_3:45324158-45324177 None:intergenic 65.0%
! CAGCCTGGTCCGGATTCGGT+TGG - chr4_3:45324156-45324175 Msa0642980:CDS 65.0%
GGAGTGGCAGCTCGAGCTTG+CGG - chr4_3:45324207-45324226 Msa0642980:intron 65.0%
CAACGACGCTAGCTCCTGCC+CGG - chr4_3:45324573-45324592 Msa0642980:intron 65.0%
AACGACGCTAGCTCCTGCCC+GGG - chr4_3:45324574-45324593 Msa0642980:intron 65.0%
GGCCAGTGCCAGAACCAGAC+AGG + chr4_3:45324749-45324768 None:intergenic 65.0%
CGGGCAGGAGCTAGCGTCGT+TGG + chr4_3:45324575-45324594 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 45321893 45327923 45321893 ID=Msa0642980;Name=Msa0642980
chr4_3 mRNA 45321893 45327923 45321893 ID=Msa0642980-mRNA-1;Parent=Msa0642980;Name=Msa0642980-mRNA-1;_AED=0.11;_eAED=0.11;_QI=704|0.72|0.68|1|0.88|0.84|19|283|807
chr4_3 exon 45321893 45322325 45321893 ID=Msa0642980-mRNA-1:exon:10484;Parent=Msa0642980-mRNA-1
chr4_3 exon 45322423 45322572 45322423 ID=Msa0642980-mRNA-1:exon:10483;Parent=Msa0642980-mRNA-1
chr4_3 exon 45322706 45322779 45322706 ID=Msa0642980-mRNA-1:exon:10482;Parent=Msa0642980-mRNA-1
chr4_3 exon 45322914 45323019 45322914 ID=Msa0642980-mRNA-1:exon:10481;Parent=Msa0642980-mRNA-1
chr4_3 exon 45323038 45323241 45323038 ID=Msa0642980-mRNA-1:exon:10480;Parent=Msa0642980-mRNA-1
chr4_3 exon 45323400 45323534 45323400 ID=Msa0642980-mRNA-1:exon:10479;Parent=Msa0642980-mRNA-1
chr4_3 exon 45323753 45323833 45323753 ID=Msa0642980-mRNA-1:exon:10478;Parent=Msa0642980-mRNA-1
chr4_3 exon 45324000 45324188 45324000 ID=Msa0642980-mRNA-1:exon:10477;Parent=Msa0642980-mRNA-1
chr4_3 exon 45324268 45324451 45324268 ID=Msa0642980-mRNA-1:exon:10476;Parent=Msa0642980-mRNA-1
chr4_3 exon 45324583 45324689 45324583 ID=Msa0642980-mRNA-1:exon:10475;Parent=Msa0642980-mRNA-1
chr4_3 exon 45324774 45324848 45324774 ID=Msa0642980-mRNA-1:exon:10474;Parent=Msa0642980-mRNA-1
chr4_3 exon 45324929 45325084 45324929 ID=Msa0642980-mRNA-1:exon:10473;Parent=Msa0642980-mRNA-1
chr4_3 exon 45325170 45325253 45325170 ID=Msa0642980-mRNA-1:exon:10472;Parent=Msa0642980-mRNA-1
chr4_3 exon 45325329 45325442 45325329 ID=Msa0642980-mRNA-1:exon:10471;Parent=Msa0642980-mRNA-1
chr4_3 exon 45325562 45325657 45325562 ID=Msa0642980-mRNA-1:exon:10470;Parent=Msa0642980-mRNA-1
chr4_3 exon 45326077 45326146 45326077 ID=Msa0642980-mRNA-1:exon:10469;Parent=Msa0642980-mRNA-1
chr4_3 exon 45326240 45326325 45326240 ID=Msa0642980-mRNA-1:exon:10468;Parent=Msa0642980-mRNA-1
chr4_3 exon 45326752 45326872 45326752 ID=Msa0642980-mRNA-1:exon:10467;Parent=Msa0642980-mRNA-1
chr4_3 exon 45326978 45327923 45326978 ID=Msa0642980-mRNA-1:exon:10466;Parent=Msa0642980-mRNA-1
chr4_3 five_prime_UTR 45327220 45327923 45327220 ID=Msa0642980-mRNA-1:five_prime_utr;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45326978 45327219 45326978 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45326752 45326872 45326752 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45326240 45326325 45326240 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45326077 45326146 45326077 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45325562 45325657 45325562 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45325329 45325442 45325329 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45325170 45325253 45325170 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45324929 45325084 45324929 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45324774 45324848 45324774 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45324583 45324689 45324583 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45324268 45324451 45324268 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45324000 45324188 45324000 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45323753 45323833 45323753 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45323400 45323534 45323400 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45323038 45323241 45323038 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45322914 45323019 45322914 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45322706 45322779 45322706 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45322423 45322572 45322423 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 CDS 45322176 45322325 45322176 ID=Msa0642980-mRNA-1:cds;Parent=Msa0642980-mRNA-1
chr4_3 three_prime_UTR 45321893 45322175 45321893 ID=Msa0642980-mRNA-1:three_prime_utr;Parent=Msa0642980-mRNA-1
Gene Sequence

>Msa0642980

ATGGCTATGGCTATGGCTGTGGCTCATCATATAGAAAGTAGTAGTAGTGGTGGAAGCATTGATAAGCATCTAGATTCAGGGAAATATGTTAGGTACACTACTGAACAAGTTGAAGCATTGGAAAGGGTTTATGCTGAGTGTCCTAAGCCTAGTTCCATGAGAAGACAACAATTGATTCGTGAGTGTCCTATTCTTTCCAACATTGAACCTAAACAGATCAAGGTTTGGTTCCAAAATCGAAGGTGTAGAGAGAAGCAAAGAAAAGAGGCTTCAAGGCTTCAAACTGTGAATAGGAAATTGTCTGCAATTAACAAGTTGTTGATGGAGGAAAATGATAGGTTGCAGAAACAAGTGTCACAGCTTCCATCAGCAGCAAATACTGATGCAAGTTGTGATTCGGTAGTTACTACTCCTCAGAATTCTAAGAGAGATGCTACTAACCCTGCTGGACTCCTATCAATTGCGGAGGAGACTTTGACAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGCCTGGTCCGGATTCGGTTGGGATCTTTGCGATTTCACAAAGTTGTAGTGGAGTGGCAGCTCGAGCTTGCGGTCTTGTTAGTTTAGAACCTACAAAGATTGCAGAGATCCTTAAAGATCGTTTATCTTGGTTTCGCGAGTGTCGGAACCTAGAAGTTTTCACAATGTTTCCTGCCGGAAATGGAGGAACCATTGAGCTTATTTATACACAGACATATGCTCCAACGACGCTAGCTCCTGCCCGGGATTTCTGGACTCTTAGATACACTACAACTTTGGACAATGGCAGTCTTGTGGTTTGTGAGAGGTCCCTGTCTGGTTCTGGCACTGGCCCTAATCCAACTGCTGCTGCTCAGTTTGTAAGAGCTGAAATGCTCCCGAGTGGCTACTTGATTCGACCATGTGATGGTGGAGGTTCAATCATCCACATTGTAGACCACTTAAATCTTGAACCGTGGAGTGTGCCAGAAGTACTACGACCACTTTATGAATCACCAAAGGTGGTGGCTCAAAAAATGACCATTGCAGCACTTCGATATATTAGGCAAATAGCTCAGGAATCGAGTGGTGAAGTGGTATACGGATTAGGTAGACAGCCTGCTGTTTTGCGAACATTCAGCCAAAGATTGAGCAGAGGCTTCAATGACGCTGTAAATGGATTCAGTGATGATGGTTGGTCTATACTGAACTGTGATGGTGCTGAGGATGTAATTATTGCTGTTAATTCAACCAAGAATTTAAGTAGCTCTTCTAATCCAGCAAGTTCCCTCACATTGCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTGCTACAAAACGTTCCTCCTGCGGTTTTGGTTCGCTTTCTAAGGGAGCACCGCTCAGAATGGGCTGATTTCAATGTTGATGCATACTCCGCTGCATCACTGAAAGCAGGAACCTATGCCTATCCAGGGATGAGGCCTACAAGATTCACTGGCAATCAAATAATCATGCCTCTGGGGAACACAATTGAACATGAAGAGATGCTTGAAGTTATTAGGCTTGAAGGACACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGATATTCATCTGTTACAGATATGTAGTGGGACTGATGAGAACGCTGTTGGGACTTGTTCTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCAGATGATGCTCCATTGGTGCCTTCTGGTTTCCGCATCATCCCATTAGATTCAAAACCAGGGGATAAGAAGGATGCCGTGAATACAAACCGGACACTGGATTTGACGTCAGGTCTTGAAGTGAACCCAACGACAACTCACGGCAGTGCAGATTCATCATCAAGCCAAAACACCCGATCAGTGTTGACTATTGCCTTTCAGTTCCCTTTTGACAGCACTATGCAAGATAATGTTGTAATCATGGCACGTCAATATGTTCGTAGTAGGGTTGCCATGGCCATTTCTCCGTCCGGTATAAACCCAGCTGTTGGTGCCAAACTTTCTCCTGGTTCTCCAGAAGCAGTTACACTAGCTCAATGGATCTGCCAGAATTCTCTTGTTGGTGACTTGATGCTGAAACAACTGTGGCATCACCAGGACGCGATTTTATGCTGTTCATTGAAGTCGCAGCCGGTGTTCGTATTTGCAAATCAAGCTGGCCTTGACATGTTGGAAACAACTCTAGTAGCTTTACAAGACATCACATTGGATAAAATATTTGACGAGTCTGGTCGCAAGGCGTTGTGTGCTGATTTTGCCAAGTTAATGCACCAGGGGTTTGCTTATCTGCCAGCTGGGATCTGCATGTCGACAATGGGGCGGCATGTTTCGTACGAGCAAGCTATTGCATGGAAAGTGCTAACACCAGAAGATAACACTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGA
Protein sequence

>Msa0642980

MAMAMAVAHHIESSSSGGSIDKHLDSGKYVRYTTEQVEALERVYAECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAINKLLMEENDRLQKQVSQLPSAANTDASCDSVVTTPQNSKRDATNPAGLLSIAEETLTEFLSKATGTAVDWPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRLSWFRECRNLEVFTMFPAGNGGTIELIYTQTYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGTGPNPTAAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEPWSVPEVLRPLYESPKVVAQKMTIAALRYIRQIAQESSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFSDDGWSILNCDGAEDVIIAVNSTKNLSSSSNPASSLTLLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGTYAYPGMRPTRFTGNQIIMPLGNTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGTDENAVGTCSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDAVNTNRTLDLTSGLEVNPTTTHGSADSSSSQNTRSVLTIAFQFPFDSTMQDNVVIMARQYVRSRVAMAISPSGINPAVGAKLSPGSPEAVTLAQWICQNSLVGDLMLKQLWHHQDAILCCSLKSQPVFVFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMHQGFAYLPAGICMSTMGRHVSYEQAIAWKVLTPEDNTVHCLAFSFINWSFV*