Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548980 | XP_024640623.1 | 92.982 | 171 | 7 | 1 | 1 | 166 | 1 | 171 | 2.53e-109 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548980 | A0A072TDR2 | 92.105 | 152 | 7 | 1 | 20 | 166 | 1 | 152 | 2.09e-98 | 293 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0548980 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0548980 | Msa0549000 | 0.833946 | 3.980507e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548980 | MtrunA17_Chr2g0289081 | 60.714 | 56 | 22 | 0 | 37 | 92 | 57 | 112 | 3.08e-19 | 80.9 |
| Msa0548980 | MtrunA17_Chr5g0448761 | 30.147 | 136 | 87 | 2 | 38 | 165 | 54 | 189 | 2.82e-13 | 68.9 |
| Msa0548980 | MtrunA17_Chr1g0198761 | 34.146 | 123 | 63 | 5 | 50 | 156 | 53 | 173 | 7.15e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548980 | AT4G38180.1 | 30.075 | 133 | 84 | 3 | 41 | 165 | 70 | 201 | 2.42e-11 | 63.5 |
Find 25 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCGGCATTTGATTT+TGG | 0.192710 | 4_1:+43679258 | None:intergenic |
| TATTGATCCTTGTATTGATA+TGG | 0.239238 | 4_1:-43679020 | Msa0548980:CDS |
| CGCTTTAAAATATATTCATT+TGG | 0.310558 | 4_1:+43677387 | None:intergenic |
| GCAATACAATCACAGTAAAA+AGG | 0.311417 | 4_1:-43678844 | Msa0548980:CDS |
| CCAAGAGTATAAACTATCTT+AGG | 0.313740 | 4_1:-43678697 | Msa0548980:CDS |
| AAATGTAATGATAGTCCATT+TGG | 0.314496 | 4_1:+43678751 | None:intergenic |
| CCTAAGATAGTTTATACTCT+TGG | 0.340102 | 4_1:+43678697 | None:intergenic |
| CTAAGATAGTTTATACTCTT+GGG | 0.346829 | 4_1:+43678698 | None:intergenic |
| ATTATGTAGACATATCTTGA+TGG | 0.397243 | 4_1:-43677439 | Msa0548980:intron |
| CATGTTATGACTATCTTCTT+CGG | 0.402279 | 4_1:+43679245 | None:intergenic |
| TGGACAAAGGATGCTAATAT+TGG | 0.412634 | 4_1:-43677363 | Msa0548980:CDS |
| AACATCAAGAACTGATTGTA+AGG | 0.444776 | 4_1:-43678807 | Msa0548980:CDS |
| ATATTTGTTTGCTCTAATGC+TGG | 0.447741 | 4_1:-43678899 | Msa0548980:CDS |
| TGAACATCTAAGTCATGCTC+AGG | 0.476339 | 4_1:+43679055 | None:intergenic |
| AATGTAATGATAGTCCATTT+GGG | 0.500833 | 4_1:+43678752 | None:intergenic |
| GGTCAGATAATAAACTTGCT+TGG | 0.514870 | 4_1:+43677259 | None:intergenic |
| GCTAATATTGGCATTATATG+TGG | 0.529640 | 4_1:-43677351 | Msa0548980:CDS |
| TGTCATTACTATCAACATGT+TGG | 0.533945 | 4_1:+43678876 | None:intergenic |
| TCATAACATGGAGGACATAG+AGG | 0.553789 | 4_1:-43679232 | Msa0548980:intron |
| TAAGATAGTTTATACTCTTG+GGG | 0.560800 | 4_1:+43678699 | None:intergenic |
| CGAAGAAGATAGTCATAACA+TGG | 0.604552 | 4_1:-43679244 | Msa0548980:CDS |
| CAATACTCATAATCATGCAA+TGG | 0.611156 | 4_1:-43678726 | Msa0548980:CDS |
| TCAAATTCCATATCAATACA+AGG | 0.614636 | 4_1:+43679013 | None:intergenic |
| GAACATCTAAGTCATGCTCA+GGG | 0.664893 | 4_1:+43679056 | None:intergenic |
| AGAAGATAGTCATAACATGG+AGG | 0.736903 | 4_1:-43679241 | Msa0548980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAATGATTAATTTTTTT+TGG | - | chr4_1:43678085-43678104 | Msa0548980:intron | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | - | chr4_1:43678086-43678105 | Msa0548980:intron | 10.0% |
| !!! | ATAGAATGATTAATTTTTTT+TGG | - | chr4_1:43678085-43678104 | Msa0548980:intron | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | - | chr4_1:43678086-43678105 | Msa0548980:intron | 10.0% |
| !! | AATCATATTTAACCATTATT+TGG | + | chr4_1:43678548-43678567 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | - | chr4_1:43678548-43678567 | Msa0548980:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | + | chr4_1:43678548-43678567 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | - | chr4_1:43678548-43678567 | Msa0548980:intron | 15.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | + | chr4_1:43678050-43678069 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | + | chr4_1:43678051-43678070 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | + | chr4_1:43678133-43678152 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | - | chr4_1:43678338-43678357 | Msa0548980:intron | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | - | chr4_1:43678562-43678581 | Msa0548980:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | + | chr4_1:43678624-43678643 | None:intergenic | 20.0% |
| !!! | TTGTCAACTTTATGATTTTA+TGG | - | chr4_1:43679037-43679056 | Msa0548980:CDS | 20.0% |
| !!! | TGTCAACTTTATGATTTTAT+GGG | - | chr4_1:43679038-43679057 | Msa0548980:CDS | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | + | chr4_1:43679119-43679138 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | - | chr4_1:43679120-43679139 | Msa0548980:intron | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | + | chr4_1:43678050-43678069 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | + | chr4_1:43678051-43678070 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | + | chr4_1:43678133-43678152 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | - | chr4_1:43678338-43678357 | Msa0548980:intron | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | - | chr4_1:43678562-43678581 | Msa0548980:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | + | chr4_1:43678624-43678643 | None:intergenic | 20.0% |
| !!! | TTGTCAACTTTATGATTTTA+TGG | - | chr4_1:43679037-43679056 | Msa0548980:CDS | 20.0% |
| !!! | TGTCAACTTTATGATTTTAT+GGG | - | chr4_1:43679038-43679057 | Msa0548980:CDS | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | + | chr4_1:43679119-43679138 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | - | chr4_1:43679120-43679139 | Msa0548980:intron | 20.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | - | chr4_1:43677483-43677502 | Msa0548980:intron | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | + | chr4_1:43677493-43677512 | None:intergenic | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | - | chr4_1:43677541-43677560 | Msa0548980:intron | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | - | chr4_1:43677547-43677566 | Msa0548980:intron | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | - | chr4_1:43677728-43677747 | Msa0548980:intron | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | + | chr4_1:43677754-43677773 | None:intergenic | 25.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | + | chr4_1:43677755-43677774 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | + | chr4_1:43677807-43677826 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | + | chr4_1:43677808-43677827 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | + | chr4_1:43678333-43678352 | None:intergenic | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | + | chr4_1:43678464-43678483 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | - | chr4_1:43678512-43678531 | Msa0548980:intron | 25.0% |
| !!! | TTGAAGATTTTGAGGAAAAT+TGG | - | chr4_1:43678520-43678539 | Msa0548980:intron | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | - | chr4_1:43678830-43678849 | Msa0548980:CDS | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | - | chr4_1:43678869-43678888 | Msa0548980:intron | 25.0% |
| ! | ATTATGTAGACATATCTTGA+TGG | - | chr4_1:43679064-43679083 | Msa0548980:CDS | 25.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | - | chr4_1:43677483-43677502 | Msa0548980:intron | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | + | chr4_1:43677493-43677512 | None:intergenic | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | - | chr4_1:43677541-43677560 | Msa0548980:intron | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | - | chr4_1:43677547-43677566 | Msa0548980:intron | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | - | chr4_1:43677728-43677747 | Msa0548980:intron | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | + | chr4_1:43677754-43677773 | None:intergenic | 25.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | + | chr4_1:43677755-43677774 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | + | chr4_1:43677807-43677826 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | + | chr4_1:43677808-43677827 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | + | chr4_1:43678333-43678352 | None:intergenic | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | + | chr4_1:43678464-43678483 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | - | chr4_1:43678512-43678531 | Msa0548980:intron | 25.0% |
| !!! | TTGAAGATTTTGAGGAAAAT+TGG | - | chr4_1:43678520-43678539 | Msa0548980:intron | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | - | chr4_1:43678830-43678849 | Msa0548980:CDS | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | - | chr4_1:43678869-43678888 | Msa0548980:intron | 25.0% |
| ! | ATTATGTAGACATATCTTGA+TGG | - | chr4_1:43679064-43679083 | Msa0548980:CDS | 25.0% |
| CATGTTATGACTATCTTCTT+CGG | + | chr4_1:43677261-43677280 | None:intergenic | 30.0% | |
| ATATTTGTTTGCTCTAATGC+TGG | - | chr4_1:43677604-43677623 | Msa0548980:intron | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | + | chr4_1:43677630-43677649 | None:intergenic | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | - | chr4_1:43677659-43677678 | Msa0548980:intron | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | - | chr4_1:43677696-43677715 | Msa0548980:intron | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | - | chr4_1:43677777-43677796 | Msa0548980:intron | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | + | chr4_1:43677809-43677828 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | - | chr4_1:43677806-43677825 | Msa0548980:intron | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | - | chr4_1:43677822-43677841 | Msa0548980:intron | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | - | chr4_1:43677823-43677842 | Msa0548980:intron | 30.0% |
| AATGTTTAGCAATGAAGGTT+CGG | - | chr4_1:43677912-43677931 | Msa0548980:intron | 30.0% | |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | - | chr4_1:43678097-43678116 | Msa0548980:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | - | chr4_1:43678123-43678142 | Msa0548980:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | + | chr4_1:43678207-43678226 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | - | chr4_1:43678225-43678244 | Msa0548980:intron | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | - | chr4_1:43678283-43678302 | Msa0548980:intron | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | + | chr4_1:43678590-43678609 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | - | chr4_1:43678595-43678614 | Msa0548980:intron | 30.0% | |
| !!! | AATATGAAGACCTTTTTTGC+TGG | - | chr4_1:43678630-43678649 | Msa0548980:intron | 30.0% |
| !!! | ATATGAAGACCTTTTTTGCT+GGG | - | chr4_1:43678631-43678650 | Msa0548980:intron | 30.0% |
| AAGGACAAAATCGAGAAAAA+TGG | - | chr4_1:43678921-43678940 | Msa0548980:CDS | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | - | chr4_1:43678922-43678941 | Msa0548980:CDS | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | - | chr4_1:43678986-43679005 | Msa0548980:CDS | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | + | chr4_1:43679030-43679049 | None:intergenic | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | - | chr4_1:43679127-43679146 | Msa0548980:intron | 30.0% |
| GCTAATATTGGCATTATATG+TGG | - | chr4_1:43679152-43679171 | Msa0548980:intron | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | + | chr4_1:43679268-43679287 | None:intergenic | 30.0% |
| CATGTTATGACTATCTTCTT+CGG | + | chr4_1:43677261-43677280 | None:intergenic | 30.0% | |
| ATATTTGTTTGCTCTAATGC+TGG | - | chr4_1:43677604-43677623 | Msa0548980:intron | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | + | chr4_1:43677630-43677649 | None:intergenic | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | - | chr4_1:43677659-43677678 | Msa0548980:intron | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | - | chr4_1:43677696-43677715 | Msa0548980:intron | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | - | chr4_1:43677777-43677796 | Msa0548980:intron | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | + | chr4_1:43677809-43677828 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | - | chr4_1:43677806-43677825 | Msa0548980:intron | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | - | chr4_1:43677822-43677841 | Msa0548980:intron | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | - | chr4_1:43677823-43677842 | Msa0548980:intron | 30.0% |
| AATGTTTAGCAATGAAGGTT+CGG | - | chr4_1:43677912-43677931 | Msa0548980:intron | 30.0% | |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | - | chr4_1:43678097-43678116 | Msa0548980:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | - | chr4_1:43678123-43678142 | Msa0548980:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | + | chr4_1:43678207-43678226 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | - | chr4_1:43678225-43678244 | Msa0548980:intron | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | - | chr4_1:43678283-43678302 | Msa0548980:intron | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | + | chr4_1:43678590-43678609 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | - | chr4_1:43678595-43678614 | Msa0548980:intron | 30.0% | |
| !!! | AATATGAAGACCTTTTTTGC+TGG | - | chr4_1:43678630-43678649 | Msa0548980:intron | 30.0% |
| !!! | ATATGAAGACCTTTTTTGCT+GGG | - | chr4_1:43678631-43678650 | Msa0548980:intron | 30.0% |
| AAGGACAAAATCGAGAAAAA+TGG | - | chr4_1:43678921-43678940 | Msa0548980:CDS | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | - | chr4_1:43678922-43678941 | Msa0548980:CDS | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | - | chr4_1:43678986-43679005 | Msa0548980:CDS | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | + | chr4_1:43679030-43679049 | None:intergenic | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | - | chr4_1:43679127-43679146 | Msa0548980:intron | 30.0% |
| GCTAATATTGGCATTATATG+TGG | - | chr4_1:43679152-43679171 | Msa0548980:intron | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | + | chr4_1:43679268-43679287 | None:intergenic | 30.0% |
| !! | TCTTCTTCGGCATTTGATTT+TGG | + | chr4_1:43677248-43677267 | None:intergenic | 35.0% |
| CGAAGAAGATAGTCATAACA+TGG | - | chr4_1:43677259-43677278 | Msa0548980:CDS | 35.0% | |
| AGAAGATAGTCATAACATGG+AGG | - | chr4_1:43677262-43677281 | Msa0548980:CDS | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | - | chr4_1:43677864-43677883 | Msa0548980:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | - | chr4_1:43677865-43677884 | Msa0548980:intron | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | + | chr4_1:43677899-43677918 | None:intergenic | 35.0% |
| GCTACAATGTTTAGCAATGA+AGG | - | chr4_1:43677907-43677926 | Msa0548980:intron | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | - | chr4_1:43677935-43677954 | Msa0548980:intron | 35.0% | |
| !!! | CAACATCCAGTTTTTGAGAT+CGG | + | chr4_1:43677978-43677997 | None:intergenic | 35.0% |
| CAAAGCACAACCGAATAAAA+TGG | + | chr4_1:43678238-43678257 | None:intergenic | 35.0% | |
| ! | TGCTTTGTTGCAAGATGAAA+CGG | - | chr4_1:43678251-43678270 | Msa0548980:intron | 35.0% |
| ! | AAACGGAGAAGTCTTTTACA+TGG | - | chr4_1:43678268-43678287 | Msa0548980:intron | 35.0% |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | - | chr4_1:43678290-43678309 | Msa0548980:intron | 35.0% |
| CATAAACGATGTCGAGTATT+AGG | + | chr4_1:43678393-43678412 | None:intergenic | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | + | chr4_1:43678442-43678461 | None:intergenic | 35.0% | |
| GGAAAATTGGCACCAAATAA+TGG | - | chr4_1:43678533-43678552 | Msa0548980:intron | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | - | chr4_1:43678570-43678589 | Msa0548980:intron | 35.0% | |
| TGTATTCATCCCAGCAAAAA+AGG | + | chr4_1:43678643-43678662 | None:intergenic | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | - | chr4_1:43678737-43678756 | Msa0548980:CDS | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | - | chr4_1:43679000-43679019 | Msa0548980:CDS | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | - | chr4_1:43679001-43679020 | Msa0548980:CDS | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | - | chr4_1:43679140-43679159 | Msa0548980:intron | 35.0% | |
| ! | GGTCAGATAATAAACTTGCT+TGG | + | chr4_1:43679247-43679266 | None:intergenic | 35.0% |
| !! | TCTTCTTCGGCATTTGATTT+TGG | + | chr4_1:43677248-43677267 | None:intergenic | 35.0% |
| CGAAGAAGATAGTCATAACA+TGG | - | chr4_1:43677259-43677278 | Msa0548980:CDS | 35.0% | |
| AGAAGATAGTCATAACATGG+AGG | - | chr4_1:43677262-43677281 | Msa0548980:CDS | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | - | chr4_1:43677864-43677883 | Msa0548980:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | - | chr4_1:43677865-43677884 | Msa0548980:intron | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | + | chr4_1:43677899-43677918 | None:intergenic | 35.0% |
| GCTACAATGTTTAGCAATGA+AGG | - | chr4_1:43677907-43677926 | Msa0548980:intron | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | - | chr4_1:43677935-43677954 | Msa0548980:intron | 35.0% | |
| !!! | CAACATCCAGTTTTTGAGAT+CGG | + | chr4_1:43677978-43677997 | None:intergenic | 35.0% |
| CAAAGCACAACCGAATAAAA+TGG | + | chr4_1:43678238-43678257 | None:intergenic | 35.0% | |
| ! | TGCTTTGTTGCAAGATGAAA+CGG | - | chr4_1:43678251-43678270 | Msa0548980:intron | 35.0% |
| ! | AAACGGAGAAGTCTTTTACA+TGG | - | chr4_1:43678268-43678287 | Msa0548980:intron | 35.0% |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | - | chr4_1:43678290-43678309 | Msa0548980:intron | 35.0% |
| CATAAACGATGTCGAGTATT+AGG | + | chr4_1:43678393-43678412 | None:intergenic | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | + | chr4_1:43678442-43678461 | None:intergenic | 35.0% | |
| GGAAAATTGGCACCAAATAA+TGG | - | chr4_1:43678533-43678552 | Msa0548980:intron | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | - | chr4_1:43678570-43678589 | Msa0548980:intron | 35.0% | |
| TGTATTCATCCCAGCAAAAA+AGG | + | chr4_1:43678643-43678662 | None:intergenic | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | - | chr4_1:43678737-43678756 | Msa0548980:CDS | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | - | chr4_1:43679000-43679019 | Msa0548980:CDS | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | - | chr4_1:43679001-43679020 | Msa0548980:CDS | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | - | chr4_1:43679140-43679159 | Msa0548980:intron | 35.0% | |
| ! | GGTCAGATAATAAACTTGCT+TGG | + | chr4_1:43679247-43679266 | None:intergenic | 35.0% |
| TCATAACATGGAGGACATAG+AGG | - | chr4_1:43677271-43677290 | Msa0548980:CDS | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | + | chr4_1:43677450-43677469 | None:intergenic | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | + | chr4_1:43677451-43677470 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | - | chr4_1:43677737-43677756 | Msa0548980:intron | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | - | chr4_1:43677826-43677845 | Msa0548980:intron | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | - | chr4_1:43677827-43677846 | Msa0548980:intron | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | - | chr4_1:43677828-43677847 | Msa0548980:intron | 40.0% | |
| AGATCTCCGATCTCAAAAAC+TGG | - | chr4_1:43677969-43677988 | Msa0548980:intron | 40.0% | |
| CGATCTCAAAAACTGGATGT+TGG | - | chr4_1:43677976-43677995 | Msa0548980:intron | 40.0% | |
| AATCCAGTAAATGGCGCAAA+TGG | + | chr4_1:43678198-43678217 | None:intergenic | 40.0% | |
| TGAAACTTGGCTAATGGCAA+TGG | - | chr4_1:43678296-43678315 | Msa0548980:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | - | chr4_1:43678297-43678316 | Msa0548980:intron | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | - | chr4_1:43678397-43678416 | Msa0548980:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | - | chr4_1:43678902-43678921 | Msa0548980:CDS | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | + | chr4_1:43678914-43678933 | None:intergenic | 40.0% |
| TCATAACATGGAGGACATAG+AGG | - | chr4_1:43677271-43677290 | Msa0548980:CDS | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | + | chr4_1:43677450-43677469 | None:intergenic | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | + | chr4_1:43677451-43677470 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | - | chr4_1:43677737-43677756 | Msa0548980:intron | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | - | chr4_1:43677826-43677845 | Msa0548980:intron | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | - | chr4_1:43677827-43677846 | Msa0548980:intron | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | - | chr4_1:43677828-43677847 | Msa0548980:intron | 40.0% | |
| AGATCTCCGATCTCAAAAAC+TGG | - | chr4_1:43677969-43677988 | Msa0548980:intron | 40.0% | |
| CGATCTCAAAAACTGGATGT+TGG | - | chr4_1:43677976-43677995 | Msa0548980:intron | 40.0% | |
| AATCCAGTAAATGGCGCAAA+TGG | + | chr4_1:43678198-43678217 | None:intergenic | 40.0% | |
| TGAAACTTGGCTAATGGCAA+TGG | - | chr4_1:43678296-43678315 | Msa0548980:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | - | chr4_1:43678297-43678316 | Msa0548980:intron | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | - | chr4_1:43678397-43678416 | Msa0548980:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | - | chr4_1:43678902-43678921 | Msa0548980:CDS | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | + | chr4_1:43678914-43678933 | None:intergenic | 40.0% |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | + | chr4_1:43677834-43677853 | None:intergenic | 45.0% |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | + | chr4_1:43677895-43677914 | None:intergenic | 45.0% |
| ! | ATGCCATTTGCGCCATTTAC+TGG | - | chr4_1:43678192-43678211 | Msa0548980:intron | 45.0% |
| GATCAAGATAAGGCGATGTG+CGG | - | chr4_1:43678348-43678367 | Msa0548980:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | - | chr4_1:43678362-43678381 | Msa0548980:intron | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | - | chr4_1:43678649-43678668 | Msa0548980:intron | 45.0% | |
| TACTACGAAATCACGCAGTG+TGG | + | chr4_1:43678721-43678740 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | + | chr4_1:43679013-43679032 | None:intergenic | 45.0% | |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | + | chr4_1:43677834-43677853 | None:intergenic | 45.0% |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | + | chr4_1:43677895-43677914 | None:intergenic | 45.0% |
| ! | ATGCCATTTGCGCCATTTAC+TGG | - | chr4_1:43678192-43678211 | Msa0548980:intron | 45.0% |
| GATCAAGATAAGGCGATGTG+CGG | - | chr4_1:43678348-43678367 | Msa0548980:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | - | chr4_1:43678362-43678381 | Msa0548980:intron | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | - | chr4_1:43678649-43678668 | Msa0548980:intron | 45.0% | |
| TACTACGAAATCACGCAGTG+TGG | + | chr4_1:43678721-43678740 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | + | chr4_1:43679013-43679032 | None:intergenic | 45.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | - | chr4_1:43678103-43678122 | Msa0548980:intron | 50.0% |
| ACTTGGCTAATGGCAATGGG+TGG | - | chr4_1:43678300-43678319 | Msa0548980:intron | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | - | chr4_1:43678884-43678903 | Msa0548980:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | - | chr4_1:43679014-43679033 | Msa0548980:CDS | 50.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | - | chr4_1:43678103-43678122 | Msa0548980:intron | 50.0% |
| ACTTGGCTAATGGCAATGGG+TGG | - | chr4_1:43678300-43678319 | Msa0548980:intron | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | - | chr4_1:43678884-43678903 | Msa0548980:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | - | chr4_1:43679014-43679033 | Msa0548980:CDS | 50.0% | |
| GATCAAGAGGGCTTGCCTAC+CGG | - | chr4_1:43677877-43677896 | Msa0548980:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | - | chr4_1:43678107-43678126 | Msa0548980:intron | 55.0% |
| GATCAAGAGGGCTTGCCTAC+CGG | - | chr4_1:43677877-43677896 | Msa0548980:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | - | chr4_1:43678107-43678126 | Msa0548980:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 43677236 | 43679289 | 43677236 | ID=Msa0548980;Name=Msa0548980 |
| chr4_1 | mRNA | 43677236 | 43679289 | 43677236 | ID=Msa0548980-mRNA-1;Parent=Msa0548980;Name=Msa0548980-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.75|0.33|0.25|4|0|238 |
| chr4_1 | exon | 43679233 | 43679289 | 43679233 | ID=Msa0548980-mRNA-1:exon:11268;Parent=Msa0548980-mRNA-1 |
| chr4_1 | exon | 43678885 | 43679107 | 43678885 | ID=Msa0548980-mRNA-1:exon:11267;Parent=Msa0548980-mRNA-1 |
| chr4_1 | exon | 43678653 | 43678869 | 43678653 | ID=Msa0548980-mRNA-1:exon:11266;Parent=Msa0548980-mRNA-1 |
| chr4_1 | exon | 43677236 | 43677452 | 43677236 | ID=Msa0548980-mRNA-1:exon:11265;Parent=Msa0548980-mRNA-1 |
| chr4_1 | CDS | 43679233 | 43679289 | 43679233 | ID=Msa0548980-mRNA-1:cds;Parent=Msa0548980-mRNA-1 |
| chr4_1 | CDS | 43678885 | 43679107 | 43678885 | ID=Msa0548980-mRNA-1:cds;Parent=Msa0548980-mRNA-1 |
| chr4_1 | CDS | 43678653 | 43678869 | 43678653 | ID=Msa0548980-mRNA-1:cds;Parent=Msa0548980-mRNA-1 |
| chr4_1 | CDS | 43677236 | 43677452 | 43677236 | ID=Msa0548980-mRNA-1:cds;Parent=Msa0548980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
