Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549000 | XP_024640623.1 | 92.982 | 171 | 7 | 1 | 1 | 166 | 1 | 171 | 2.53e-109 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549000 | A0A072TDR2 | 92.105 | 152 | 7 | 1 | 20 | 166 | 1 | 152 | 2.09e-98 | 293 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0549000 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0548980 | Msa0549000 | 0.833946 | 3.980507e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549000 | MtrunA17_Chr2g0289081 | 60.714 | 56 | 22 | 0 | 37 | 92 | 57 | 112 | 3.08e-19 | 80.9 |
| Msa0549000 | MtrunA17_Chr5g0448761 | 30.147 | 136 | 87 | 2 | 38 | 165 | 54 | 189 | 2.82e-13 | 68.9 |
| Msa0549000 | MtrunA17_Chr1g0198761 | 34.146 | 123 | 63 | 5 | 50 | 156 | 53 | 173 | 7.15e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549000 | AT4G38180.1 | 30.075 | 133 | 84 | 3 | 41 | 165 | 70 | 201 | 2.42e-11 | 63.5 |
Find 25 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCGGCATTTGATTT+TGG | 0.192710 | 4_1:-43754233 | None:intergenic |
| TATTGATCCTTGTATTGATA+TGG | 0.239238 | 4_1:+43754471 | Msa0549000:CDS |
| CGCTTTAAAATATATTCATT+TGG | 0.310558 | 4_1:-43756104 | None:intergenic |
| GCAATACAATCACAGTAAAA+AGG | 0.311417 | 4_1:+43754647 | Msa0549000:CDS |
| CCAAGAGTATAAACTATCTT+AGG | 0.313740 | 4_1:+43754794 | Msa0549000:CDS |
| AAATGTAATGATAGTCCATT+TGG | 0.314496 | 4_1:-43754740 | None:intergenic |
| CCTAAGATAGTTTATACTCT+TGG | 0.340102 | 4_1:-43754794 | None:intergenic |
| CTAAGATAGTTTATACTCTT+GGG | 0.346829 | 4_1:-43754793 | None:intergenic |
| ATTATGTAGACATATCTTGA+TGG | 0.397243 | 4_1:+43756052 | Msa0549000:intron |
| CATGTTATGACTATCTTCTT+CGG | 0.402279 | 4_1:-43754246 | None:intergenic |
| TGGACAAAGGATGCTAATAT+TGG | 0.412634 | 4_1:+43756128 | Msa0549000:CDS |
| AACATCAAGAACTGATTGTA+AGG | 0.444776 | 4_1:+43754684 | Msa0549000:CDS |
| ATATTTGTTTGCTCTAATGC+TGG | 0.447741 | 4_1:+43754592 | Msa0549000:CDS |
| TGAACATCTAAGTCATGCTC+AGG | 0.476339 | 4_1:-43754436 | None:intergenic |
| AATGTAATGATAGTCCATTT+GGG | 0.500833 | 4_1:-43754739 | None:intergenic |
| GGTCAGATAATAAACTTGCT+TGG | 0.514870 | 4_1:-43756232 | None:intergenic |
| GCTAATATTGGCATTATATG+TGG | 0.529640 | 4_1:+43756140 | Msa0549000:CDS |
| TGTCATTACTATCAACATGT+TGG | 0.533945 | 4_1:-43754615 | None:intergenic |
| TCATAACATGGAGGACATAG+AGG | 0.553789 | 4_1:+43754259 | Msa0549000:CDS |
| TAAGATAGTTTATACTCTTG+GGG | 0.560800 | 4_1:-43754792 | None:intergenic |
| CGAAGAAGATAGTCATAACA+TGG | 0.604552 | 4_1:+43754247 | Msa0549000:CDS |
| CAATACTCATAATCATGCAA+TGG | 0.611156 | 4_1:+43754765 | Msa0549000:CDS |
| TCAAATTCCATATCAATACA+AGG | 0.614636 | 4_1:-43754478 | None:intergenic |
| GAACATCTAAGTCATGCTCA+GGG | 0.664893 | 4_1:-43754435 | None:intergenic |
| AGAAGATAGTCATAACATGG+AGG | 0.736903 | 4_1:+43754250 | Msa0549000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAATGATTAATTTTTTT+TGG | + | chr4_1:43755073-43755092 | Msa0549000:intron | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | + | chr4_1:43755074-43755093 | Msa0549000:intron | 10.0% |
| !!! | ATAGAATGATTAATTTTTTT+TGG | + | chr4_1:43755073-43755092 | Msa0549000:intron | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | + | chr4_1:43755074-43755093 | Msa0549000:intron | 10.0% |
| !! | AATCATATTTAACCATTATT+TGG | - | chr4_1:43755536-43755555 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | + | chr4_1:43755536-43755555 | Msa0549000:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | - | chr4_1:43755536-43755555 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | + | chr4_1:43755536-43755555 | Msa0549000:intron | 15.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | - | chr4_1:43755038-43755057 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | - | chr4_1:43755039-43755058 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | - | chr4_1:43755121-43755140 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | + | chr4_1:43755326-43755345 | Msa0549000:intron | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | + | chr4_1:43755550-43755569 | Msa0549000:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | - | chr4_1:43755612-43755631 | None:intergenic | 20.0% |
| !!! | TTGTCAACTTTATGATTTTA+TGG | + | chr4_1:43756025-43756044 | Msa0549000:intron | 20.0% |
| !!! | TGTCAACTTTATGATTTTAT+GGG | + | chr4_1:43756026-43756045 | Msa0549000:intron | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | - | chr4_1:43756107-43756126 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | + | chr4_1:43756108-43756127 | Msa0549000:CDS | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | - | chr4_1:43755038-43755057 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | - | chr4_1:43755039-43755058 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | - | chr4_1:43755121-43755140 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | + | chr4_1:43755326-43755345 | Msa0549000:intron | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | + | chr4_1:43755550-43755569 | Msa0549000:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | - | chr4_1:43755612-43755631 | None:intergenic | 20.0% |
| !!! | TTGTCAACTTTATGATTTTA+TGG | + | chr4_1:43756025-43756044 | Msa0549000:intron | 20.0% |
| !!! | TGTCAACTTTATGATTTTAT+GGG | + | chr4_1:43756026-43756045 | Msa0549000:intron | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | - | chr4_1:43756107-43756126 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | + | chr4_1:43756108-43756127 | Msa0549000:CDS | 20.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | + | chr4_1:43754471-43754490 | Msa0549000:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | - | chr4_1:43754481-43754500 | None:intergenic | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | + | chr4_1:43754529-43754548 | Msa0549000:CDS | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | + | chr4_1:43754535-43754554 | Msa0549000:CDS | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | + | chr4_1:43754716-43754735 | Msa0549000:CDS | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | - | chr4_1:43754742-43754761 | None:intergenic | 25.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | - | chr4_1:43754743-43754762 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | - | chr4_1:43754795-43754814 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | - | chr4_1:43754796-43754815 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | - | chr4_1:43755321-43755340 | None:intergenic | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | - | chr4_1:43755452-43755471 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | + | chr4_1:43755500-43755519 | Msa0549000:intron | 25.0% |
| !!! | TTGAAGATTTTGAGGAAAAT+TGG | + | chr4_1:43755508-43755527 | Msa0549000:intron | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | + | chr4_1:43755818-43755837 | Msa0549000:intron | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | + | chr4_1:43755857-43755876 | Msa0549000:intron | 25.0% |
| ! | ATTATGTAGACATATCTTGA+TGG | + | chr4_1:43756052-43756071 | Msa0549000:intron | 25.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | + | chr4_1:43754471-43754490 | Msa0549000:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | - | chr4_1:43754481-43754500 | None:intergenic | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | + | chr4_1:43754529-43754548 | Msa0549000:CDS | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | + | chr4_1:43754535-43754554 | Msa0549000:CDS | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | + | chr4_1:43754716-43754735 | Msa0549000:CDS | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | - | chr4_1:43754742-43754761 | None:intergenic | 25.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | - | chr4_1:43754743-43754762 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | - | chr4_1:43754795-43754814 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | - | chr4_1:43754796-43754815 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | - | chr4_1:43755321-43755340 | None:intergenic | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | - | chr4_1:43755452-43755471 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | + | chr4_1:43755500-43755519 | Msa0549000:intron | 25.0% |
| !!! | TTGAAGATTTTGAGGAAAAT+TGG | + | chr4_1:43755508-43755527 | Msa0549000:intron | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | + | chr4_1:43755818-43755837 | Msa0549000:intron | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | + | chr4_1:43755857-43755876 | Msa0549000:intron | 25.0% |
| ! | ATTATGTAGACATATCTTGA+TGG | + | chr4_1:43756052-43756071 | Msa0549000:intron | 25.0% |
| CATGTTATGACTATCTTCTT+CGG | - | chr4_1:43754249-43754268 | None:intergenic | 30.0% | |
| ATATTTGTTTGCTCTAATGC+TGG | + | chr4_1:43754592-43754611 | Msa0549000:CDS | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | - | chr4_1:43754618-43754637 | None:intergenic | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | + | chr4_1:43754647-43754666 | Msa0549000:CDS | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | + | chr4_1:43754684-43754703 | Msa0549000:CDS | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | + | chr4_1:43754765-43754784 | Msa0549000:CDS | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | - | chr4_1:43754797-43754816 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | + | chr4_1:43754794-43754813 | Msa0549000:CDS | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | + | chr4_1:43754810-43754829 | Msa0549000:CDS | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | + | chr4_1:43754811-43754830 | Msa0549000:CDS | 30.0% |
| AATGTTTAGCAATGAAGGTT+CGG | + | chr4_1:43754900-43754919 | Msa0549000:intron | 30.0% | |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | + | chr4_1:43755085-43755104 | Msa0549000:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | + | chr4_1:43755111-43755130 | Msa0549000:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | - | chr4_1:43755195-43755214 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | + | chr4_1:43755213-43755232 | Msa0549000:intron | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | + | chr4_1:43755271-43755290 | Msa0549000:intron | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | - | chr4_1:43755578-43755597 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | + | chr4_1:43755583-43755602 | Msa0549000:intron | 30.0% | |
| !!! | AATATGAAGACCTTTTTTGC+TGG | + | chr4_1:43755618-43755637 | Msa0549000:intron | 30.0% |
| !!! | ATATGAAGACCTTTTTTGCT+GGG | + | chr4_1:43755619-43755638 | Msa0549000:intron | 30.0% |
| AAGGACAAAATCGAGAAAAA+TGG | + | chr4_1:43755909-43755928 | Msa0549000:intron | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | + | chr4_1:43755910-43755929 | Msa0549000:intron | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | + | chr4_1:43755974-43755993 | Msa0549000:intron | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | - | chr4_1:43756018-43756037 | None:intergenic | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | + | chr4_1:43756115-43756134 | Msa0549000:CDS | 30.0% |
| GCTAATATTGGCATTATATG+TGG | + | chr4_1:43756140-43756159 | Msa0549000:CDS | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | - | chr4_1:43756256-43756275 | None:intergenic | 30.0% |
| CATGTTATGACTATCTTCTT+CGG | - | chr4_1:43754249-43754268 | None:intergenic | 30.0% | |
| ATATTTGTTTGCTCTAATGC+TGG | + | chr4_1:43754592-43754611 | Msa0549000:CDS | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | - | chr4_1:43754618-43754637 | None:intergenic | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | + | chr4_1:43754647-43754666 | Msa0549000:CDS | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | + | chr4_1:43754684-43754703 | Msa0549000:CDS | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | + | chr4_1:43754765-43754784 | Msa0549000:CDS | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | - | chr4_1:43754797-43754816 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | + | chr4_1:43754794-43754813 | Msa0549000:CDS | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | + | chr4_1:43754810-43754829 | Msa0549000:CDS | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | + | chr4_1:43754811-43754830 | Msa0549000:CDS | 30.0% |
| AATGTTTAGCAATGAAGGTT+CGG | + | chr4_1:43754900-43754919 | Msa0549000:intron | 30.0% | |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | + | chr4_1:43755085-43755104 | Msa0549000:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | + | chr4_1:43755111-43755130 | Msa0549000:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | - | chr4_1:43755195-43755214 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | + | chr4_1:43755213-43755232 | Msa0549000:intron | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | + | chr4_1:43755271-43755290 | Msa0549000:intron | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | - | chr4_1:43755578-43755597 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | + | chr4_1:43755583-43755602 | Msa0549000:intron | 30.0% | |
| !!! | AATATGAAGACCTTTTTTGC+TGG | + | chr4_1:43755618-43755637 | Msa0549000:intron | 30.0% |
| !!! | ATATGAAGACCTTTTTTGCT+GGG | + | chr4_1:43755619-43755638 | Msa0549000:intron | 30.0% |
| AAGGACAAAATCGAGAAAAA+TGG | + | chr4_1:43755909-43755928 | Msa0549000:intron | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | + | chr4_1:43755910-43755929 | Msa0549000:intron | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | + | chr4_1:43755974-43755993 | Msa0549000:intron | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | - | chr4_1:43756018-43756037 | None:intergenic | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | + | chr4_1:43756115-43756134 | Msa0549000:CDS | 30.0% |
| GCTAATATTGGCATTATATG+TGG | + | chr4_1:43756140-43756159 | Msa0549000:CDS | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | - | chr4_1:43756256-43756275 | None:intergenic | 30.0% |
| !! | TCTTCTTCGGCATTTGATTT+TGG | - | chr4_1:43754236-43754255 | None:intergenic | 35.0% |
| CGAAGAAGATAGTCATAACA+TGG | + | chr4_1:43754247-43754266 | Msa0549000:CDS | 35.0% | |
| AGAAGATAGTCATAACATGG+AGG | + | chr4_1:43754250-43754269 | Msa0549000:CDS | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | + | chr4_1:43754852-43754871 | Msa0549000:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | + | chr4_1:43754853-43754872 | Msa0549000:intron | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | - | chr4_1:43754887-43754906 | None:intergenic | 35.0% |
| GCTACAATGTTTAGCAATGA+AGG | + | chr4_1:43754895-43754914 | Msa0549000:intron | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | + | chr4_1:43754923-43754942 | Msa0549000:intron | 35.0% | |
| !!! | CAACATCCAGTTTTTGAGAT+CGG | - | chr4_1:43754966-43754985 | None:intergenic | 35.0% |
| CAAAGCACAACCGAATAAAA+TGG | - | chr4_1:43755226-43755245 | None:intergenic | 35.0% | |
| ! | TGCTTTGTTGCAAGATGAAA+CGG | + | chr4_1:43755239-43755258 | Msa0549000:intron | 35.0% |
| ! | AAACGGAGAAGTCTTTTACA+TGG | + | chr4_1:43755256-43755275 | Msa0549000:intron | 35.0% |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | + | chr4_1:43755278-43755297 | Msa0549000:intron | 35.0% |
| CATAAACGATGTCGAGTATT+AGG | - | chr4_1:43755381-43755400 | None:intergenic | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | - | chr4_1:43755430-43755449 | None:intergenic | 35.0% | |
| GGAAAATTGGCACCAAATAA+TGG | + | chr4_1:43755521-43755540 | Msa0549000:intron | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | + | chr4_1:43755558-43755577 | Msa0549000:intron | 35.0% | |
| TGTATTCATCCCAGCAAAAA+AGG | - | chr4_1:43755631-43755650 | None:intergenic | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | + | chr4_1:43755725-43755744 | Msa0549000:intron | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | + | chr4_1:43755988-43756007 | Msa0549000:intron | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | + | chr4_1:43755989-43756008 | Msa0549000:intron | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | + | chr4_1:43756128-43756147 | Msa0549000:CDS | 35.0% | |
| ! | GGTCAGATAATAAACTTGCT+TGG | - | chr4_1:43756235-43756254 | None:intergenic | 35.0% |
| !! | TCTTCTTCGGCATTTGATTT+TGG | - | chr4_1:43754236-43754255 | None:intergenic | 35.0% |
| CGAAGAAGATAGTCATAACA+TGG | + | chr4_1:43754247-43754266 | Msa0549000:CDS | 35.0% | |
| AGAAGATAGTCATAACATGG+AGG | + | chr4_1:43754250-43754269 | Msa0549000:CDS | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | + | chr4_1:43754852-43754871 | Msa0549000:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | + | chr4_1:43754853-43754872 | Msa0549000:intron | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | - | chr4_1:43754887-43754906 | None:intergenic | 35.0% |
| GCTACAATGTTTAGCAATGA+AGG | + | chr4_1:43754895-43754914 | Msa0549000:intron | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | + | chr4_1:43754923-43754942 | Msa0549000:intron | 35.0% | |
| !!! | CAACATCCAGTTTTTGAGAT+CGG | - | chr4_1:43754966-43754985 | None:intergenic | 35.0% |
| CAAAGCACAACCGAATAAAA+TGG | - | chr4_1:43755226-43755245 | None:intergenic | 35.0% | |
| ! | TGCTTTGTTGCAAGATGAAA+CGG | + | chr4_1:43755239-43755258 | Msa0549000:intron | 35.0% |
| ! | AAACGGAGAAGTCTTTTACA+TGG | + | chr4_1:43755256-43755275 | Msa0549000:intron | 35.0% |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | + | chr4_1:43755278-43755297 | Msa0549000:intron | 35.0% |
| CATAAACGATGTCGAGTATT+AGG | - | chr4_1:43755381-43755400 | None:intergenic | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | - | chr4_1:43755430-43755449 | None:intergenic | 35.0% | |
| GGAAAATTGGCACCAAATAA+TGG | + | chr4_1:43755521-43755540 | Msa0549000:intron | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | + | chr4_1:43755558-43755577 | Msa0549000:intron | 35.0% | |
| TGTATTCATCCCAGCAAAAA+AGG | - | chr4_1:43755631-43755650 | None:intergenic | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | + | chr4_1:43755725-43755744 | Msa0549000:intron | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | + | chr4_1:43755988-43756007 | Msa0549000:intron | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | + | chr4_1:43755989-43756008 | Msa0549000:intron | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | + | chr4_1:43756128-43756147 | Msa0549000:CDS | 35.0% | |
| ! | GGTCAGATAATAAACTTGCT+TGG | - | chr4_1:43756235-43756254 | None:intergenic | 35.0% |
| TCATAACATGGAGGACATAG+AGG | + | chr4_1:43754259-43754278 | Msa0549000:CDS | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | - | chr4_1:43754438-43754457 | None:intergenic | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | - | chr4_1:43754439-43754458 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | + | chr4_1:43754725-43754744 | Msa0549000:CDS | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | + | chr4_1:43754814-43754833 | Msa0549000:CDS | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | + | chr4_1:43754815-43754834 | Msa0549000:CDS | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | + | chr4_1:43754816-43754835 | Msa0549000:CDS | 40.0% | |
| AGATCTCCGATCTCAAAAAC+TGG | + | chr4_1:43754957-43754976 | Msa0549000:intron | 40.0% | |
| CGATCTCAAAAACTGGATGT+TGG | + | chr4_1:43754964-43754983 | Msa0549000:intron | 40.0% | |
| AATCCAGTAAATGGCGCAAA+TGG | - | chr4_1:43755186-43755205 | None:intergenic | 40.0% | |
| TGAAACTTGGCTAATGGCAA+TGG | + | chr4_1:43755284-43755303 | Msa0549000:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | + | chr4_1:43755285-43755304 | Msa0549000:intron | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | + | chr4_1:43755385-43755404 | Msa0549000:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | + | chr4_1:43755890-43755909 | Msa0549000:intron | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | - | chr4_1:43755902-43755921 | None:intergenic | 40.0% |
| TCATAACATGGAGGACATAG+AGG | + | chr4_1:43754259-43754278 | Msa0549000:CDS | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | - | chr4_1:43754438-43754457 | None:intergenic | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | - | chr4_1:43754439-43754458 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | + | chr4_1:43754725-43754744 | Msa0549000:CDS | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | + | chr4_1:43754814-43754833 | Msa0549000:CDS | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | + | chr4_1:43754815-43754834 | Msa0549000:CDS | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | + | chr4_1:43754816-43754835 | Msa0549000:CDS | 40.0% | |
| AGATCTCCGATCTCAAAAAC+TGG | + | chr4_1:43754957-43754976 | Msa0549000:intron | 40.0% | |
| CGATCTCAAAAACTGGATGT+TGG | + | chr4_1:43754964-43754983 | Msa0549000:intron | 40.0% | |
| AATCCAGTAAATGGCGCAAA+TGG | - | chr4_1:43755186-43755205 | None:intergenic | 40.0% | |
| TGAAACTTGGCTAATGGCAA+TGG | + | chr4_1:43755284-43755303 | Msa0549000:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | + | chr4_1:43755285-43755304 | Msa0549000:intron | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | + | chr4_1:43755385-43755404 | Msa0549000:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | + | chr4_1:43755890-43755909 | Msa0549000:intron | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | - | chr4_1:43755902-43755921 | None:intergenic | 40.0% |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | - | chr4_1:43754822-43754841 | None:intergenic | 45.0% |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | - | chr4_1:43754883-43754902 | None:intergenic | 45.0% |
| ! | ATGCCATTTGCGCCATTTAC+TGG | + | chr4_1:43755180-43755199 | Msa0549000:intron | 45.0% |
| GATCAAGATAAGGCGATGTG+CGG | + | chr4_1:43755336-43755355 | Msa0549000:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | + | chr4_1:43755350-43755369 | Msa0549000:intron | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | + | chr4_1:43755637-43755656 | Msa0549000:intron | 45.0% | |
| TACTACGAAATCACGCAGTG+TGG | - | chr4_1:43755709-43755728 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | - | chr4_1:43756001-43756020 | None:intergenic | 45.0% | |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | - | chr4_1:43754822-43754841 | None:intergenic | 45.0% |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | - | chr4_1:43754883-43754902 | None:intergenic | 45.0% |
| ! | ATGCCATTTGCGCCATTTAC+TGG | + | chr4_1:43755180-43755199 | Msa0549000:intron | 45.0% |
| GATCAAGATAAGGCGATGTG+CGG | + | chr4_1:43755336-43755355 | Msa0549000:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | + | chr4_1:43755350-43755369 | Msa0549000:intron | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | + | chr4_1:43755637-43755656 | Msa0549000:intron | 45.0% | |
| TACTACGAAATCACGCAGTG+TGG | - | chr4_1:43755709-43755728 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | - | chr4_1:43756001-43756020 | None:intergenic | 45.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | + | chr4_1:43755091-43755110 | Msa0549000:intron | 50.0% |
| ACTTGGCTAATGGCAATGGG+TGG | + | chr4_1:43755288-43755307 | Msa0549000:intron | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | + | chr4_1:43755872-43755891 | Msa0549000:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | + | chr4_1:43756002-43756021 | Msa0549000:intron | 50.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | + | chr4_1:43755091-43755110 | Msa0549000:intron | 50.0% |
| ACTTGGCTAATGGCAATGGG+TGG | + | chr4_1:43755288-43755307 | Msa0549000:intron | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | + | chr4_1:43755872-43755891 | Msa0549000:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | + | chr4_1:43756002-43756021 | Msa0549000:intron | 50.0% | |
| GATCAAGAGGGCTTGCCTAC+CGG | + | chr4_1:43754865-43754884 | Msa0549000:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | + | chr4_1:43755095-43755114 | Msa0549000:intron | 55.0% |
| GATCAAGAGGGCTTGCCTAC+CGG | + | chr4_1:43754865-43754884 | Msa0549000:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | + | chr4_1:43755095-43755114 | Msa0549000:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 43754224 | 43756277 | 43754224 | ID=Msa0549000;Name=Msa0549000 |
| chr4_1 | mRNA | 43754224 | 43756277 | 43754224 | ID=Msa0549000-mRNA-1;Parent=Msa0549000;Name=Msa0549000-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.75|0.33|0.25|4|0|238 |
| chr4_1 | exon | 43754224 | 43754280 | 43754224 | ID=Msa0549000-mRNA-1:exon:11278;Parent=Msa0549000-mRNA-1 |
| chr4_1 | exon | 43754406 | 43754628 | 43754406 | ID=Msa0549000-mRNA-1:exon:11279;Parent=Msa0549000-mRNA-1 |
| chr4_1 | exon | 43754644 | 43754860 | 43754644 | ID=Msa0549000-mRNA-1:exon:11280;Parent=Msa0549000-mRNA-1 |
| chr4_1 | exon | 43756061 | 43756277 | 43756061 | ID=Msa0549000-mRNA-1:exon:11281;Parent=Msa0549000-mRNA-1 |
| chr4_1 | CDS | 43754224 | 43754280 | 43754224 | ID=Msa0549000-mRNA-1:cds;Parent=Msa0549000-mRNA-1 |
| chr4_1 | CDS | 43754406 | 43754628 | 43754406 | ID=Msa0549000-mRNA-1:cds;Parent=Msa0549000-mRNA-1 |
| chr4_1 | CDS | 43754644 | 43754860 | 43754644 | ID=Msa0549000-mRNA-1:cds;Parent=Msa0549000-mRNA-1 |
| chr4_1 | CDS | 43756061 | 43756277 | 43756061 | ID=Msa0549000-mRNA-1:cds;Parent=Msa0549000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
