AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0549220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549220 MtrunA17_Chr4g0042671 87.470 415 32 4 1 404 1 406 0.0 723
Msa0549220 MtrunA17_Chr4g0042621 85.366 328 27 5 89 404 15 333 0.0 538
Msa0549220 MtrunA17_Chr6g0453471 78.652 178 33 2 1 174 1 177 5.02e-100 301
Msa0549220 MtrunA17_Chr7g0217741 76.216 185 42 2 1 184 1 184 1.31e-98 296
Msa0549220 MtrunA17_Chr8g0349261 63.529 170 58 3 1 166 1 170 5.39e-72 228
Msa0549220 MtrunA17_Chr4g0048511 75.000 132 32 1 1 131 1 132 5.71e-72 229
Msa0549220 MtrunA17_Chr2g0281071 75.385 130 31 1 1 129 1 130 7.27e-71 226
Msa0549220 MtrunA17_Chr3g0115821 72.519 131 36 0 1 131 1 131 1.27e-70 226
Msa0549220 MtrunA17_Chr5g0417821 66.225 151 48 1 10 160 5 152 7.38e-69 219
Msa0549220 MtrunA17_Chr2g0323411 72.519 131 36 0 1 131 1 131 8.23e-68 218
Msa0549220 MtrunA17_Chr5g0410961 70.229 131 39 0 1 131 1 131 7.41e-67 216
Msa0549220 MtrunA17_Chr4g0039971 68.702 131 41 0 1 131 2 132 1.10e-66 216
Msa0549220 MtrunA17_Chr1g0203411 59.763 169 62 2 1 168 1 164 9.22e-66 211
Msa0549220 MtrunA17_Chr5g0395281 64.885 131 46 0 1 131 1 131 7.72e-62 201
Msa0549220 MtrunA17_Chr3g0103281 67.969 128 41 0 1 128 1 128 2.32e-60 198
Msa0549220 MtrunA17_Chr3g0110351 53.631 179 83 0 1 179 1 179 3.30e-60 197
Msa0549220 MtrunA17_Chr5g0434571 64.286 140 50 0 1 140 37 176 8.47e-60 198
Msa0549220 MtrunA17_Chr4g0057031 66.406 128 43 0 1 128 1 128 2.29e-59 194
Msa0549220 MtrunA17_Chr1g0193371 67.176 131 43 0 1 131 1 131 1.25e-58 195
Msa0549220 MtrunA17_Chr3g0131121 61.538 143 55 0 1 143 1 143 1.31e-58 193
Msa0549220 MtrunA17_Chr1g0193801 64.885 131 46 0 1 131 1 131 1.55e-58 195
Msa0549220 MtrunA17_Chr7g0274581 65.254 118 41 0 1 118 1 118 2.13e-58 189
Msa0549220 MtrunA17_Chr4g0058631 36.628 344 175 8 1 311 1 334 4.13e-58 194
Msa0549220 MtrunA17_Chr4g0037141 58.333 144 60 0 1 144 1 144 7.27e-58 191
Msa0549220 MtrunA17_Chr7g0261281 71.552 116 33 0 1 116 1 116 1.02e-57 190
Msa0549220 MtrunA17_Chr7g0270891 64.122 131 47 0 1 131 1 131 1.35e-57 192
Msa0549220 MtrunA17_Chr1g0187761 69.828 116 35 0 1 116 1 116 6.57e-57 187
Msa0549220 MtrunA17_Chr8g0385321 64.062 128 46 0 1 128 1 128 1.01e-56 189
Msa0549220 MtrunA17_Chr7g0254411 65.873 126 41 1 1 124 1 126 2.03e-56 188
Msa0549220 MtrunA17_Chr1g0167661 72.414 116 32 0 1 116 1 116 2.04e-56 186
Msa0549220 MtrunA17_Chr5g0435101 59.854 137 54 1 3 138 2 138 3.51e-56 184
Msa0549220 MtrunA17_Chr1g0167691 70.690 116 34 0 1 116 1 116 4.83e-56 185
Msa0549220 MtrunA17_Chr7g0217221 68.644 118 37 0 1 118 1 118 6.10e-56 185
Msa0549220 MtrunA17_Chr4g0060721 51.515 165 70 2 1 165 2 156 6.25e-56 187
Msa0549220 MtrunA17_Chr7g0228891 64.062 128 46 0 1 128 1 128 1.00e-55 184
Msa0549220 MtrunA17_Chr6g0452271 60.938 128 50 0 1 128 1 128 1.12e-55 186
Msa0549220 MtrunA17_Chr3g0121241 65.323 124 43 0 5 128 35 158 2.10e-55 185
Msa0549220 MtrunA17_Chr7g0247131 67.717 127 39 1 44 168 10 136 4.91e-55 182
Msa0549220 MtrunA17_Chr3g0117091 66.667 129 41 2 1 128 1 128 5.35e-55 185
Msa0549220 MtrunA17_Chr3g0092401 66.387 119 40 0 1 119 2 120 6.78e-55 184
Msa0549220 MtrunA17_Chr2g0323351 67.797 118 38 0 1 118 1 118 1.18e-54 181
Msa0549220 MtrunA17_Chr7g0271241 66.412 131 44 0 1 131 1 131 1.41e-54 185
Msa0549220 MtrunA17_Chr1g0211161 64.341 129 45 1 1 128 1 129 7.24e-54 178
Msa0549220 MtrunA17_Chr4g0042611 88.636 88 10 0 1 88 1 88 9.67e-54 173
Msa0549220 MtrunA17_Chr4g0068061 65.517 116 40 0 1 116 1 116 1.01e-52 179
Msa0549220 MtrunA17_Chr2g0311221 66.364 110 37 0 2 111 4 113 1.46e-52 178
Msa0549220 MtrunA17_Chr8g0346561 65.254 118 41 0 1 118 1 118 2.70e-52 176
Msa0549220 MtrunA17_Chr7g0275911 64.655 116 41 0 1 116 1 116 2.03e-51 173
Msa0549220 MtrunA17_Chr2g0309911 60.833 120 47 0 7 126 6 125 7.06e-51 173
Msa0549220 MtrunA17_Chr6g0453211 67.568 111 36 0 1 111 1 111 8.31e-51 173
Msa0549220 MtrunA17_Chr4g0022931 64.957 117 40 1 1 116 1 117 1.38e-50 171
Msa0549220 MtrunA17_Chr4g0022901 58.824 136 51 2 1 135 1 132 3.67e-50 170
Msa0549220 MtrunA17_Chr1g0194951 59.690 129 52 0 1 129 1 129 7.14e-50 172
Msa0549220 MtrunA17_Chr8g0342521 55.147 136 61 0 1 136 1 136 2.69e-49 170
Msa0549220 MtrunA17_Chr4g0022911 62.931 116 42 1 1 115 1 116 2.73e-49 168
Msa0549220 MtrunA17_Chr4g0070611 65.517 116 40 0 1 116 1 116 2.98e-49 169
Msa0549220 MtrunA17_Chr4g0070641 65.517 116 40 0 1 116 1 116 3.98e-49 164
Msa0549220 MtrunA17_Chr4g0028311 60.769 130 49 2 1 129 1 129 5.55e-49 169
Msa0549220 MtrunA17_Chr2g0330041 58.400 125 52 0 1 125 1 125 6.38e-49 171
Msa0549220 MtrunA17_Chr5g0400821 64.957 117 40 1 1 116 1 117 1.62e-48 167
Msa0549220 MtrunA17_Chr4g0044421 54.861 144 58 2 3 139 2 145 1.79e-48 163
Msa0549220 MtrunA17_Chr1g0152011 46.277 188 97 2 1 187 1 185 2.77e-48 167
Msa0549220 MtrunA17_Chr8g0342541 57.258 124 53 0 1 124 1 124 3.50e-48 167
Msa0549220 MtrunA17_Chr4g0032401 54.861 144 54 2 12 144 17 160 1.43e-47 165
Msa0549220 MtrunA17_Chr1g0151941 52.083 144 66 2 1 141 1 144 1.65e-47 162
Msa0549220 MtrunA17_Chr7g0264641 61.667 120 45 1 1 119 1 120 1.75e-47 163
Msa0549220 MtrunA17_Chr3g0135311 63.248 117 42 1 1 116 1 117 2.12e-47 165
Msa0549220 MtrunA17_Chr8g0387421 58.475 118 49 0 1 118 1 118 2.63e-47 164
Msa0549220 MtrunA17_Chr4g0022881 61.404 114 44 0 1 114 1 114 2.02e-46 159
Msa0549220 MtrunA17_Chr2g0327351 65.766 111 37 1 1 110 1 111 2.28e-46 162
Msa0549220 MtrunA17_Chr1g0203441 62.609 115 42 1 13 127 14 127 1.12e-45 158
Msa0549220 MtrunA17_Chr5g0397231 60.909 110 43 0 1 110 1 110 1.83e-45 160
Msa0549220 MtrunA17_Chr2g0328771 62.963 108 40 0 12 119 20 127 6.89e-45 157
Msa0549220 MtrunA17_Chr7g0269831 60.317 126 50 0 1 126 1 126 1.08e-44 158
Msa0549220 MtrunA17_Chr3g0088461 64.815 108 38 0 9 116 19 126 1.58e-44 157
Msa0549220 MtrunA17_Chr4g0054391 63.303 109 39 1 1 108 1 109 4.64e-44 155
Msa0549220 MtrunA17_Chr4g0022891 48.611 144 74 0 1 144 1 144 8.50e-44 152
Msa0549220 MtrunA17_Chr4g0072751 63.063 111 40 1 1 110 1 111 1.14e-43 155
Msa0549220 MtrunA17_Chr8g0342481 54.400 125 56 1 1 124 1 125 8.57e-43 154
Msa0549220 MtrunA17_Chr6g0470971 53.285 137 60 2 7 143 9 141 5.41e-42 149
Msa0549220 MtrunA17_Chr6g0487491 49.068 161 72 3 1 152 1 160 1.44e-41 147
Msa0549220 MtrunA17_Chr4g0055981 52.206 136 65 0 9 144 52 187 2.09e-41 146
Msa0549220 MtrunA17_Chr3g0080861 58.929 112 45 1 10 121 35 145 1.64e-40 150
Msa0549220 MtrunA17_Chr2g0294811 68.182 88 28 0 1 88 1 88 1.90e-40 139
Msa0549220 MtrunA17_Chr1g0186061 61.165 103 40 0 13 115 21 123 2.99e-40 144
Msa0549220 MtrunA17_Chr1g0168661 62.136 103 39 0 13 115 22 124 4.29e-40 143
Msa0549220 MtrunA17_Chr8g0354661 58.036 112 46 1 10 121 35 145 1.00e-39 149
Msa0549220 MtrunA17_Chr1g0209661 53.333 120 56 0 8 127 23 142 1.25e-39 144
Msa0549220 MtrunA17_Chr1g0194291 54.545 121 55 0 2 122 11 131 1.43e-39 142
Msa0549220 MtrunA17_Chr3g0099131 58.182 110 45 1 12 121 41 149 2.60e-39 147
Msa0549220 MtrunA17_Chr2g0322521 58.407 113 46 1 9 121 26 137 5.47e-39 144
Msa0549220 MtrunA17_Chr5g0434911 54.955 111 50 0 7 117 16 126 5.85e-39 140
Msa0549220 MtrunA17_Chr1g0154031 56.731 104 45 0 12 115 76 179 8.09e-39 144
Msa0549220 MtrunA17_Chr5g0434931 56.075 107 47 0 11 117 34 140 9.77e-39 140
Msa0549220 MtrunA17_Chr1g0194301 52.542 118 56 0 12 129 33 150 1.43e-38 140
Msa0549220 MtrunA17_Chr7g0220341 57.273 110 45 1 10 117 23 132 3.80e-38 139
Msa0549220 MtrunA17_Chr7g0228231 57.944 107 45 0 12 118 14 120 5.71e-38 136
Msa0549220 MtrunA17_Chr7g0240821 51.724 116 56 0 16 131 5 120 3.24e-37 135
Msa0549220 MtrunA17_Chr8g0343831 55.932 118 48 1 1 118 1 114 4.14e-37 135
Msa0549220 MtrunA17_Chr1g0180391 56.190 105 46 0 12 116 19 123 4.87e-37 134
Msa0549220 MtrunA17_Chr2g0327821 51.695 118 54 1 12 126 6 123 6.85e-37 134
Msa0549220 MtrunA17_Chr6g0450101 55.556 108 48 0 12 119 14 121 7.95e-37 133
Msa0549220 MtrunA17_Chr8g0360111 58.824 102 42 0 11 112 24 125 9.66e-37 134
Msa0549220 MtrunA17_Chr5g0434831 56.604 106 46 0 11 116 6 111 1.13e-36 132
Msa0549220 MtrunA17_Chr7g0228991 55.140 107 48 0 11 117 28 134 1.34e-36 134
Msa0549220 MtrunA17_Chr4g0030881 54.545 110 43 1 13 115 8 117 6.15e-36 132
Msa0549220 MtrunA17_Chr5g0434841 55.660 106 47 0 11 116 19 124 1.20e-35 133
Msa0549220 MtrunA17_Chr2g0323321 63.043 92 33 1 1 92 1 91 1.70e-35 126
Msa0549220 MtrunA17_Chr8g0342511 60.920 87 34 0 1 87 1 87 1.06e-34 124
Msa0549220 MtrunA17_Chr1g0192411 41.509 159 84 3 1 151 1 158 2.66e-34 131
Msa0549220 MtrunA17_Chr5g0395221 64.706 85 30 0 4 88 4 88 2.79e-34 122
Msa0549220 MtrunA17_Chr2g0293911 50.820 122 60 0 8 129 20 141 4.96e-34 129
Msa0549220 MtrunA17_Chr4g0068921 51.695 118 57 0 12 129 24 141 1.01e-33 124
Msa0549220 MtrunA17_Chr8g0342531 61.446 83 32 0 7 89 7 89 4.85e-33 122
Msa0549220 MtrunA17_Chr5g0440781 40.141 142 77 3 13 147 13 153 5.96e-32 119
Msa0549220 MtrunA17_Chr8g0334881 49.541 109 53 2 12 119 10 117 1.00e-31 122
Msa0549220 MtrunA17_Chr5g0440761 40.141 142 77 3 13 147 13 153 1.83e-31 120
Msa0549220 MtrunA17_Chr5g0441141 40.141 142 77 3 13 147 13 153 2.19e-31 120
Msa0549220 MtrunA17_Chr8g0342471 56.667 90 38 1 1 89 1 90 5.19e-31 115
Msa0549220 MtrunA17_Chr8g0342461 55.556 90 39 1 1 89 1 90 1.48e-30 114
Msa0549220 MtrunA17_Chr4g0013361 40.789 152 84 4 8 156 6 154 5.57e-30 117
Msa0549220 MtrunA17_Chr3g0099141 54.023 87 40 0 8 94 36 122 5.78e-30 112
Msa0549220 MtrunA17_Chr3g0093811 40.000 155 78 2 44 189 14 162 1.26e-29 115
Msa0549220 MtrunA17_Chr5g0441131 46.087 115 60 2 10 123 7 120 1.87e-29 112
Msa0549220 MtrunA17_Chr5g0401731 43.939 132 72 2 14 144 15 145 2.58e-29 116
Msa0549220 MtrunA17_Chr6g0454921 44.000 125 69 1 14 138 15 138 1.13e-28 111
Msa0549220 MtrunA17_Chr4g0008551 46.018 113 56 2 14 126 38 145 8.23e-28 112
Msa0549220 MtrunA17_Chr3g0133601 50.980 102 49 1 14 115 37 137 2.01e-27 108
Msa0549220 MtrunA17_Chr4g0053431 46.154 104 55 1 14 117 5 107 1.01e-26 107
Msa0549220 MtrunA17_Chr7g0238631 47.619 105 54 1 12 116 111 214 5.55e-26 110
Msa0549220 MtrunA17_Chr5g0429661 44.860 107 58 1 12 118 120 225 1.83e-25 106
Msa0549220 MtrunA17_Chr7g0229131 54.651 86 38 1 44 129 4 88 3.48e-24 98.2
Msa0549220 MtrunA17_Chr7g0229101 62.857 70 26 0 44 113 4 73 6.69e-24 98.6
Msa0549220 MtrunA17_Chr6g0453751 48.936 94 39 2 11 95 19 112 9.59e-24 95.9
Msa0549220 MtrunA17_Chr6g0480581 38.931 131 78 2 14 144 4 132 5.83e-23 96.7
Msa0549220 MtrunA17_Chr5g0434901 63.235 68 25 0 46 113 7 74 1.15e-22 92.4
Msa0549220 MtrunA17_Chr5g0437321 45.455 99 53 1 14 112 19 116 7.82e-22 94.7
Msa0549220 MtrunA17_Chr4g0058991 40.541 111 65 1 8 118 203 312 8.37e-22 97.1
Msa0549220 MtrunA17_Chr4g0042501 40.870 115 62 2 2 116 98 206 1.81e-21 95.5
Msa0549220 MtrunA17_Chr3g0139671 40.000 105 62 1 12 116 83 186 3.46e-21 96.3
Msa0549220 MtrunA17_Chr3g0139671 36.000 100 62 2 14 112 33 131 2.12e-12 68.9
Msa0549220 MtrunA17_Chr6g0460671 43.137 102 57 1 14 115 99 199 4.04e-21 94.0
Msa0549220 MtrunA17_Chr3g0117511 38.739 111 67 1 8 118 177 286 4.81e-21 94.7
Msa0549220 MtrunA17_Chr5g0425591 47.126 87 45 1 10 95 7 93 5.85e-21 87.0
Msa0549220 MtrunA17_Chr6g0460661 41.880 117 64 3 14 129 16 129 6.97e-21 89.0
Msa0549220 MtrunA17_Chr5g0417621 40.517 116 61 3 2 116 127 235 8.73e-21 94.0
Msa0549220 MtrunA17_Chr1g0157731 40.000 105 62 1 12 116 89 192 1.92e-20 94.0
Msa0549220 MtrunA17_Chr1g0157731 34.000 100 64 2 14 112 39 137 8.67e-12 67.0
Msa0549220 MtrunA17_Chr3g0125801 43.689 103 55 2 14 115 16 116 7.75e-20 89.0
Msa0549220 MtrunA17_Chr7g0254261 40.000 115 63 2 1 115 81 189 1.23e-19 89.4
Msa0549220 MtrunA17_Chr7g0228531 38.532 109 65 2 10 118 216 322 1.49e-19 90.1
Msa0549220 MtrunA17_Chr5g0397841 43.299 97 54 1 12 108 108 203 5.53e-19 88.6
Msa0549220 MtrunA17_Chr7g0228401 46.512 86 45 1 25 110 290 374 3.05e-18 86.7
Msa0549220 MtrunA17_Chr7g0238651 38.053 113 66 2 17 125 10 122 5.07e-18 84.7
Msa0549220 MtrunA17_Chr7g0228481 37.624 101 61 2 10 110 216 314 9.00e-17 81.6
Msa0549220 MtrunA17_Chr7g0233061 37.736 106 45 2 14 110 180 273 2.18e-16 80.1
Msa0549220 MtrunA17_Chr5g0395231 59.259 54 22 0 78 131 5 58 3.85e-16 77.8
Msa0549220 MtrunA17_Chr1g0177901 49.206 63 32 0 48 110 27 89 8.99e-16 75.9
Msa0549220 MtrunA17_Chr5g0416341 40.404 99 58 1 17 115 29 126 1.47e-15 78.2
Msa0549220 MtrunA17_Chr1g0193901 45.977 87 45 2 12 96 11 97 3.45e-15 71.2
Msa0549220 MtrunA17_Chr1g0193891 45.977 87 45 2 12 96 11 97 3.45e-15 71.2
Msa0549220 MtrunA17_Chr1g0193871 45.977 87 45 2 12 96 11 97 3.45e-15 71.2
Msa0549220 MtrunA17_Chr1g0193881 45.977 87 45 2 12 96 11 97 3.45e-15 71.2
Msa0549220 MtrunA17_Chr7g0247141 59.574 47 18 1 1 46 1 47 1.66e-13 65.1
Msa0549220 MtrunA17_Chr8g0362231 38.384 99 60 1 17 115 25 122 1.67e-13 71.6
Msa0549220 MtrunA17_Chr5g0434871 60.465 43 17 0 74 116 2 44 5.90e-12 60.8
Msa0549220 MtrunA17_Chr3g0145551 58.696 46 19 0 92 137 2 47 9.07e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549220 AT3G01140.2 44.417 403 152 10 1 397 1 337 1.07e-96 293
Msa0549220 AT5G15310.4 74.457 184 45 1 1 182 1 184 1.08e-95 286
Msa0549220 AT5G15310.2 74.457 184 45 1 1 182 1 184 4.57e-95 288
Msa0549220 AT5G15310.1 74.457 184 45 1 1 182 1 184 6.81e-95 288
Msa0549220 AT3G01140.1 43.781 402 150 10 4 397 47 380 3.11e-93 285
Msa0549220 AT3G61250.1 67.273 165 54 0 1 165 1 165 6.44e-79 246
Msa0549220 AT4G21440.1 74.046 131 34 0 1 131 1 131 3.18e-72 230
Msa0549220 AT3G02940.2 74.046 131 34 0 1 131 1 131 1.57e-71 227
Msa0549220 AT4G05100.1 76.154 130 30 1 1 129 1 130 4.71e-71 226
Msa0549220 AT3G02940.1 74.046 131 34 0 1 131 1 131 5.28e-71 226
Msa0549220 AT3G02940.3 74.046 131 34 0 1 131 1 131 5.28e-71 226
Msa0549220 AT5G16770.4 73.282 131 35 0 1 131 1 131 1.33e-69 223
Msa0549220 AT5G16770.3 73.282 131 35 0 1 131 1 131 1.33e-69 223
Msa0549220 AT5G16770.1 73.282 131 35 0 1 131 1 131 4.01e-69 222
Msa0549220 AT5G16770.2 73.282 131 35 0 1 131 1 131 4.01e-69 222
Msa0549220 AT1G34670.1 73.282 131 35 0 1 131 1 131 5.67e-69 222
Msa0549220 AT4G28110.1 72.868 129 35 0 1 129 1 129 1.19e-68 219
Msa0549220 AT5G10280.1 67.883 137 44 0 1 137 1 137 1.33e-67 218
Msa0549220 AT5G65230.1 70.229 131 39 0 1 131 1 131 1.74e-65 211
Msa0549220 AT5G54230.1 65.772 149 51 0 1 149 1 149 7.44e-65 210
Msa0549220 AT4G17785.2 70.455 132 38 1 1 131 1 132 3.89e-64 209
Msa0549220 AT4G17785.1 70.455 132 38 1 1 131 1 132 5.05e-64 209
Msa0549220 AT5G61420.2 70.312 128 38 0 1 128 1 128 1.61e-62 206
Msa0549220 AT2G31180.1 61.635 159 45 2 1 148 1 154 1.79e-62 202
Msa0549220 AT1G74080.1 64.336 143 50 1 1 143 1 142 7.08e-62 203
Msa0549220 AT5G07700.1 68.750 128 40 0 1 128 1 128 7.32e-62 203
Msa0549220 AT5G07700.2 68.750 128 40 0 1 128 1 128 7.32e-62 203
Msa0549220 AT5G60890.1 68.750 128 40 0 1 128 1 128 1.20e-61 201
Msa0549220 AT5G07690.1 69.531 128 39 0 1 128 1 128 1.66e-61 202
Msa0549220 AT4G34990.1 63.380 142 52 0 1 142 1 142 2.01e-61 200
Msa0549220 AT1G18570.1 66.423 137 45 1 1 136 1 137 4.54e-61 201
Msa0549220 AT5G16600.1 71.094 128 37 0 1 128 1 128 4.65e-61 201
Msa0549220 AT4G12350.1 62.162 148 56 0 1 148 1 148 8.64e-61 198
Msa0549220 AT5G56110.1 60.000 150 59 1 1 149 1 150 3.30e-60 198
Msa0549220 AT4G22680.1 67.969 128 41 0 1 128 1 128 3.46e-60 196
Msa0549220 AT1G66230.1 68.750 128 40 0 1 128 1 128 2.71e-59 194
Msa0549220 AT4G01680.3 64.029 139 50 0 1 139 1 139 2.75e-59 193
Msa0549220 AT3G23250.1 67.692 130 38 1 1 130 1 126 3.66e-59 194
Msa0549220 AT4G38620.1 44.495 218 109 2 1 209 1 215 7.64e-59 193
Msa0549220 AT1G35515.1 63.235 136 50 0 1 136 1 136 1.07e-58 191
Msa0549220 AT4G01680.1 64.029 139 50 0 1 139 1 139 1.49e-58 194
Msa0549220 AT4G09460.1 62.774 137 51 0 1 137 1 137 3.47e-58 190
Msa0549220 AT2G16720.1 47.872 188 91 1 1 181 1 188 1.02e-57 190
Msa0549220 AT5G62470.2 53.939 165 74 2 1 165 1 163 1.26e-57 192
Msa0549220 AT5G26660.1 67.188 128 42 0 1 128 1 128 1.54e-57 192
Msa0549220 AT1G06180.1 74.138 116 30 0 1 116 1 116 1.79e-57 189
Msa0549220 AT1G22640.1 64.567 127 45 0 1 127 1 127 1.83e-57 189
Msa0549220 AT1G74430.1 64.615 130 46 0 1 130 1 130 2.65e-57 189
Msa0549220 AT3G47600.1 51.429 175 70 3 1 165 1 170 1.01e-56 189
Msa0549220 AT1G18710.1 60.870 138 54 0 1 138 1 138 4.35e-56 186
Msa0549220 AT3G13540.1 63.200 125 46 0 4 128 15 139 5.95e-56 185
Msa0549220 AT5G62470.1 53.939 165 73 3 1 165 1 162 9.13e-56 187
Msa0549220 AT1G57560.2 57.143 147 63 0 1 147 1 147 1.03e-55 185
Msa0549220 AT1G79180.1 68.376 117 37 0 2 118 4 120 1.05e-55 186
Msa0549220 AT1G08810.1 60.140 143 56 1 1 143 1 142 1.30e-55 185
Msa0549220 AT1G57560.1 58.741 143 57 1 1 143 1 141 4.63e-55 184
Msa0549220 AT4G01680.2 58.940 151 50 1 1 139 1 151 5.18e-55 185
Msa0549220 AT1G74650.1 67.227 119 39 0 1 119 1 119 1.28e-54 184
Msa0549220 AT1G09540.1 61.832 131 50 0 1 131 1 131 1.37e-54 185
Msa0549220 AT5G62320.1 60.902 133 45 1 2 127 3 135 2.22e-54 181
Msa0549220 AT5G14340.1 58.647 133 55 0 1 133 13 145 6.58e-54 180
Msa0549220 AT3G28910.1 64.754 122 43 0 1 122 1 122 2.40e-53 180
Msa0549220 AT1G16490.1 65.517 116 40 0 2 117 4 119 1.03e-52 177
Msa0549220 AT3G28470.1 63.281 128 47 0 1 128 1 128 2.26e-51 175
Msa0549220 AT1G56160.1 65.517 116 40 0 2 117 4 119 6.65e-51 173
Msa0549220 AT5G49330.1 63.793 116 42 0 1 116 1 116 2.32e-50 173
Msa0549220 AT3G62610.1 60.800 125 49 0 1 125 1 125 5.94e-50 172
Msa0549220 AT2G47460.1 62.931 116 43 0 1 116 1 116 3.98e-49 171
Msa0549220 AT1G79180.2 53.333 150 37 1 2 118 4 153 7.21e-49 169
Msa0549220 AT3G13890.2 61.207 116 45 0 1 116 1 116 1.25e-48 169
Msa0549220 AT3G49690.1 65.812 117 39 1 1 116 1 117 1.25e-48 167
Msa0549220 AT1G63910.1 54.478 134 61 0 1 134 1 134 1.94e-48 169
Msa0549220 AT3G12720.1 57.500 120 51 0 7 126 17 136 2.30e-48 167
Msa0549220 AT5G57620.1 64.103 117 41 1 1 116 1 117 4.03e-48 167
Msa0549220 AT5G23000.1 62.393 117 43 1 1 116 1 117 2.12e-47 165
Msa0549220 AT5G65790.1 64.957 117 40 1 1 116 1 117 2.35e-47 166
Msa0549220 AT3G12820.1 60.345 116 46 0 3 118 5 120 5.89e-46 158
Msa0549220 AT3G13890.1 56.800 125 45 1 1 116 1 125 1.17e-45 161
Msa0549220 AT2G36890.1 58.268 127 52 1 1 126 1 127 1.55e-45 159
Msa0549220 AT2G36890.2 58.268 127 52 1 1 126 42 168 3.01e-45 159
Msa0549220 AT4G37780.1 58.974 117 47 1 1 116 1 117 1.03e-44 157
Msa0549220 AT5G12870.1 63.889 108 39 0 12 119 18 125 1.47e-44 156
Msa0549220 AT4G26930.1 60.714 112 43 1 10 121 17 127 1.13e-42 154
Msa0549220 AT5G14750.1 61.538 104 40 0 13 116 17 120 1.25e-42 149
Msa0549220 AT5G55020.1 63.393 112 40 1 10 121 24 134 1.52e-42 156
Msa0549220 AT2G26960.1 41.919 198 102 5 9 198 17 209 6.56e-42 153
Msa0549220 AT3G08500.1 63.810 105 38 0 12 116 30 134 8.52e-42 150
Msa0549220 AT5G40330.1 60.577 104 41 0 13 116 13 116 1.68e-41 146
Msa0549220 AT5G52600.1 61.682 107 41 0 9 115 9 115 7.13e-41 144
Msa0549220 AT2G32460.1 56.667 120 51 1 8 127 14 132 1.46e-40 150
Msa0549220 AT5G35550.1 62.857 105 39 0 12 116 14 118 1.81e-40 144
Msa0549220 AT2G32460.2 57.265 117 49 1 11 127 5 120 2.17e-40 150
Msa0549220 AT4G25560.1 56.522 115 48 1 1 115 1 113 4.03e-40 144
Msa0549220 AT1G48000.1 54.167 120 55 0 10 129 30 149 6.37e-40 142
Msa0549220 AT5G26660.2 76.190 84 20 0 45 128 14 97 9.34e-40 144
Msa0549220 AT3G27920.1 59.048 105 43 0 13 117 15 119 1.00e-39 142
Msa0549220 AT5G06100.1 57.658 111 46 1 11 121 31 140 1.07e-39 147
Msa0549220 AT3G24310.1 60.952 105 41 0 11 115 17 121 1.27e-39 142
Msa0549220 AT3G48920.1 53.226 124 57 1 13 136 19 141 1.66e-39 142
Msa0549220 AT5G52260.1 49.655 145 67 1 13 151 13 157 2.40e-39 142
Msa0549220 AT1G25340.1 55.652 115 51 0 13 127 19 133 2.48e-39 142
Msa0549220 AT5G06100.5 57.658 111 46 1 11 121 31 140 3.37e-39 147
Msa0549220 AT5G06100.2 57.658 111 46 1 11 121 31 140 3.37e-39 147
Msa0549220 AT5G06100.3 57.658 111 46 1 11 121 31 140 3.37e-39 147
Msa0549220 AT5G06100.4 57.658 111 46 1 11 121 31 140 3.37e-39 147
Msa0549220 AT4G13480.1 61.165 103 40 0 13 115 7 109 5.52e-39 140
Msa0549220 AT3G11440.2 56.364 110 47 1 12 121 41 149 5.93e-39 145
Msa0549220 AT5G40350.1 56.881 109 47 0 12 120 17 125 6.03e-39 139
Msa0549220 AT3G30210.1 59.615 104 42 0 11 114 26 129 1.61e-38 140
Msa0549220 AT3G11440.3 56.364 110 47 1 12 121 41 149 2.01e-38 145
Msa0549220 AT3G11440.4 56.364 110 47 1 12 121 41 149 2.01e-38 145
Msa0549220 AT3G11440.1 56.364 110 47 1 12 121 41 149 2.01e-38 145
Msa0549220 AT1G66370.1 55.652 115 47 1 1 115 1 111 4.54e-38 138
Msa0549220 AT3G01530.1 56.881 109 47 0 8 116 21 129 5.62e-38 136
Msa0549220 AT3G27810.1 53.509 114 53 0 12 125 20 133 1.03e-37 136
Msa0549220 AT2G47190.1 52.174 115 55 0 8 122 16 130 5.76e-37 135
Msa0549220 AT3G46130.1 57.143 105 45 0 11 115 8 112 5.76e-37 135
Msa0549220 AT5G59780.3 56.731 104 45 0 12 115 8 111 1.01e-36 134
Msa0549220 AT3G53200.1 56.364 110 48 0 6 115 3 112 1.05e-36 134
Msa0549220 AT1G68320.1 52.586 116 55 0 12 127 19 134 9.98e-36 133
Msa0549220 AT3G06490.1 53.279 122 57 0 8 129 15 136 3.02e-35 132
Msa0549220 AT1G25340.2 53.043 115 49 1 13 127 19 128 1.27e-34 129
Msa0549220 AT1G25340.3 53.043 115 49 1 13 127 19 128 2.74e-34 129
Msa0549220 AT1G66380.1 59.048 105 43 0 11 115 7 111 4.83e-34 124
Msa0549220 AT5G49620.1 50.820 122 60 0 8 129 22 143 2.57e-33 127
Msa0549220 AT1G56650.1 58.095 105 44 0 11 115 7 111 4.53e-33 124
Msa0549220 AT1G66390.1 57.143 105 45 0 11 115 7 111 8.19e-33 124
Msa0549220 AT3G60460.1 51.754 114 53 2 7 119 6 118 9.27e-33 125
Msa0549220 AT3G47600.2 48.092 131 53 3 45 165 39 164 1.50e-32 125
Msa0549220 AT5G15310.3 61.386 101 37 1 84 182 5 105 1.11e-31 121
Msa0549220 AT5G35550.2 69.231 78 24 0 39 116 44 121 2.91e-30 117
Msa0549220 AT5G14750.3 65.385 78 24 1 39 116 12 86 6.33e-30 114
Msa0549220 AT5G49620.2 45.588 136 60 1 8 129 22 157 8.49e-30 117
Msa0549220 AT3G12820.2 69.014 71 22 0 48 118 2 72 4.24e-29 112
Msa0549220 AT2G26950.1 44.248 113 62 1 9 121 13 124 3.32e-28 114
Msa0549220 AT3G46130.3 66.667 72 24 0 44 115 9 80 9.70e-28 109
Msa0549220 AT3G53200.2 63.636 77 28 0 39 115 3 79 1.12e-27 108
Msa0549220 AT5G40350.2 60.526 76 30 0 45 120 5 80 1.74e-27 107
Msa0549220 AT5G59780.2 66.197 71 24 0 45 115 20 90 2.47e-27 108
Msa0549220 AT1G71030.1 55.556 90 39 1 38 127 7 95 2.95e-27 107
Msa0549220 AT3G46130.4 66.197 71 24 0 45 115 20 90 4.99e-27 108
Msa0549220 AT3G27810.2 55.556 81 36 0 45 125 4 84 1.75e-26 105
Msa0549220 AT5G67300.1 49.020 102 51 1 14 115 6 106 1.89e-26 108
Msa0549220 AT1G22640.3 63.768 69 25 0 59 127 2 70 1.93e-26 105
Msa0549220 AT1G71030.2 58.442 77 32 0 51 127 5 81 2.24e-26 104
Msa0549220 AT1G18960.1 45.299 117 57 3 14 128 10 121 1.32e-25 105
Msa0549220 AT4G37260.1 47.664 107 55 1 14 120 13 118 1.48e-25 106
Msa0549220 AT2G23290.1 48.077 104 53 1 14 117 13 115 2.77e-25 105
Msa0549220 AT5G02320.1 45.714 105 56 1 12 116 125 228 3.05e-25 108
Msa0549220 AT5G02320.2 45.714 105 56 1 12 116 125 228 3.05e-25 108
Msa0549220 AT5G02320.3 45.714 105 56 1 12 116 65 168 3.36e-25 107
Msa0549220 AT3G50060.1 45.536 112 59 2 14 125 6 115 4.00e-25 104
Msa0549220 AT2G39880.1 49.020 102 51 1 14 115 50 150 1.29e-24 104
Msa0549220 AT3G09230.1 47.573 103 53 1 14 116 55 156 1.38e-24 104
Msa0549220 AT3G09370.2 45.192 104 56 1 12 115 133 235 2.21e-24 105
Msa0549220 AT3G09370.2 35.000 100 63 2 14 112 83 181 1.37e-11 66.6
Msa0549220 AT3G09370.1 45.192 104 56 1 12 115 128 230 2.37e-24 105
Msa0549220 AT3G09370.1 35.000 100 63 2 14 112 78 176 1.54e-11 66.2
Msa0549220 AT3G09370.3 45.192 104 56 1 12 115 141 243 3.33e-24 104
Msa0549220 AT3G09370.3 35.000 100 63 2 14 112 91 189 1.64e-11 66.2
Msa0549220 AT4G18770.1 42.609 115 57 2 8 118 211 320 4.45e-24 103
Msa0549220 AT3G23250.2 66.667 72 20 1 59 130 2 69 5.81e-24 99.8
Msa0549220 AT1G17950.1 47.573 103 51 2 14 115 5 105 1.02e-23 99.4
Msa0549220 AT5G40360.1 40.517 116 67 2 1 116 145 258 5.29e-23 99.8
Msa0549220 AT5G58850.1 46.939 98 49 2 12 108 103 198 5.49e-23 100
Msa0549220 AT3G55730.1 44.340 106 58 1 14 119 56 160 5.77e-23 100
Msa0549220 AT1G66380.3 66.197 71 24 0 45 115 8 78 7.32e-23 92.8
Msa0549220 AT1G69560.1 43.119 109 59 2 9 116 102 208 8.10e-23 98.6
Msa0549220 AT1G69560.2 43.119 109 59 2 9 116 118 224 9.91e-23 98.6
Msa0549220 AT3G27785.1 41.441 111 64 1 8 118 183 292 1.56e-22 99.4
Msa0549220 AT5G11510.3 43.119 109 53 2 12 116 79 182 6.52e-22 99.0
Msa0549220 AT5G11510.1 43.119 109 53 2 12 116 79 182 6.52e-22 99.0
Msa0549220 AT5G11510.4 43.119 109 53 2 12 116 79 182 6.52e-22 99.0
Msa0549220 AT5G11050.1 44.898 98 51 2 14 110 105 200 7.43e-22 97.1
Msa0549220 AT5G11510.5 43.119 109 53 2 12 116 79 182 7.66e-22 98.6
Msa0549220 AT5G11510.2 43.119 109 53 2 12 116 79 182 7.81e-22 98.6
Msa0549220 AT1G26780.1 44.762 105 55 2 12 115 96 198 9.61e-22 94.7
Msa0549220 AT1G26780.2 44.340 106 56 2 12 116 96 199 9.91e-22 95.9
Msa0549220 AT4G32730.5 41.905 105 60 1 12 116 85 188 1.40e-21 97.8
Msa0549220 AT4G32730.5 36.000 100 62 2 14 112 35 133 1.13e-12 70.5
Msa0549220 AT4G32730.4 41.905 105 60 1 12 116 85 188 1.40e-21 97.8
Msa0549220 AT4G32730.4 36.000 100 62 2 14 112 35 133 1.13e-12 70.5
Msa0549220 AT4G32730.3 41.905 105 60 1 12 116 85 188 1.40e-21 97.8
Msa0549220 AT4G32730.3 36.000 100 62 2 14 112 35 133 1.13e-12 70.5
Msa0549220 AT4G32730.2 41.905 105 60 1 12 116 85 188 1.40e-21 97.8
Msa0549220 AT4G32730.2 36.000 100 62 2 14 112 35 133 1.13e-12 70.5
Msa0549220 AT4G32730.1 41.905 105 60 1 12 116 85 188 1.40e-21 97.8
Msa0549220 AT4G32730.1 36.000 100 62 2 14 112 35 133 1.11e-12 70.1
Msa0549220 AT4G33450.1 39.815 108 64 1 8 115 13 119 3.10e-21 92.4
Msa0549220 AT1G66380.2 56.250 80 35 0 11 90 7 86 5.73e-21 87.8
Msa0549220 AT5G14750.4 65.517 58 20 0 59 116 2 59 7.59e-21 88.6
Msa0549220 AT5G14750.2 65.517 58 20 0 59 116 2 59 7.59e-21 88.6
Msa0549220 AT1G73410.1 45.098 102 55 1 14 115 6 106 7.63e-21 91.3
Msa0549220 AT1G73410.2 43.697 119 60 3 14 132 6 117 9.30e-21 90.1
Msa0549220 AT5G17800.1 41.228 114 65 2 2 115 82 193 4.19e-20 90.9
Msa0549220 AT2G25230.1 40.171 117 69 1 4 120 16 131 1.14e-19 87.8
Msa0549220 AT5G61420.1 77.083 48 11 0 81 128 2 49 1.72e-18 85.5
Msa0549220 AT5G39700.1 41.346 104 59 2 15 118 57 158 8.84e-18 81.3
Msa0549220 AT3G29020.1 34.400 125 73 3 14 131 65 187 1.08e-17 82.0
Msa0549220 AT3G29020.2 33.871 124 75 2 14 131 67 189 2.49e-17 82.4
Msa0549220 AT2G02820.3 41.414 99 57 1 17 115 33 130 9.89e-17 81.3
Msa0549220 AT2G02820.1 41.414 99 57 1 17 115 33 130 1.14e-16 82.0
Msa0549220 AT2G02820.2 41.414 99 57 1 17 115 33 130 1.30e-16 82.0
Msa0549220 AT2G37630.1 38.000 100 60 1 17 114 7 106 1.73e-16 80.9
Msa0549220 AT4G00540.2 39.815 108 61 2 12 116 101 207 4.59e-16 79.7
Msa0549220 AT4G00540.1 38.739 111 64 2 12 119 99 208 7.41e-16 79.3
Msa0549220 AT4G28110.2 71.429 42 12 0 88 129 4 45 2.70e-15 74.3
Msa0549220 AT5G40430.1 33.333 117 76 2 4 120 44 158 2.75e-15 75.9
Msa0549220 AT1G14350.2 39.394 99 59 1 17 115 28 125 4.23e-15 77.0
Msa0549220 AT1G14350.1 39.394 99 59 1 17 115 28 125 4.23e-15 77.0
Msa0549220 AT1G74650.3 71.429 42 12 0 78 119 2 43 8.30e-14 71.2
Msa0549220 AT3G28910.2 64.444 45 16 0 78 122 2 46 1.73e-13 70.5
Msa0549220 AT5G59780.1 65.116 43 15 0 73 115 4 46 3.44e-13 67.8
Msa0549220 AT3G46130.2 65.116 43 15 0 73 115 4 46 6.05e-13 67.8
Msa0549220 AT4G25560.2 64.444 45 16 0 71 115 3 47 8.77e-13 67.8
Msa0549220 AT1G74430.2 53.704 54 25 0 77 130 8 61 1.97e-12 66.2
Msa0549220 AT1G22640.2 65.000 40 14 0 88 127 16 55 8.42e-12 64.3
Msa0549220 AT5G14340.2 50.000 54 26 1 81 133 2 55 1.10e-11 63.9
Msa0549220 AT3G18100.1 34.000 100 57 2 13 108 545 639 2.24e-11 66.2
Msa0549220 AT3G18100.4 34.000 100 57 2 13 108 384 478 2.50e-11 65.9
Msa0549220 AT3G18100.3 34.000 100 57 2 13 108 497 591 2.63e-11 65.9
Msa0549220 AT3G18100.2 34.000 100 57 2 13 108 332 426 3.02e-11 65.5

Find 88 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATCATCATTGGTGTTAT+TGG 0.154714 4_1:+44233019 None:intergenic
ATCTCATTGTCTGTTCTTCT+TGG 0.155064 4_1:+44233602 None:intergenic
TCTATCATTGAACAATTTAT+TGG 0.211916 4_1:-44236591 None:intergenic
ATTCAACTTCATGCCCTTCT+TGG 0.237204 4_1:-44236133 Msa0549220:CDS
ATAGCTTATATTGAAGAATT+TGG 0.246166 4_1:-44236396 Msa0549220:CDS
ACTATAGGGAGTACTTAATT+AGG 0.252519 4_1:-44232624 Msa0549220:three_prime_UTR
TCATTGGTGTTATTGGTTAA+AGG 0.282090 4_1:+44233026 None:intergenic
GCTAAGGTTTGCTGAGTCTT+TGG 0.282733 4_1:+44233478 None:intergenic
CGTGTATTGCCTTCCAAATC+TGG 0.287344 4_1:-44236360 Msa0549220:intron
AAACCAGCACGTGAATGTTT+TGG 0.288057 4_1:+44236519 None:intergenic
TCGAGGAGAATAAGCATTAT+TGG 0.289886 4_1:-44232752 Msa0549220:CDS
AAGAGGAAAGTTTAGTTTGC+AGG 0.291765 4_1:-44236170 Msa0549220:CDS
AAGAATTTGGTCATGGAAAC+TGG 0.296931 4_1:-44236383 Msa0549220:CDS
TCAGCAAGATGATGATATTA+TGG 0.317696 4_1:-44232913 Msa0549220:CDS
GATAAAATACCAACCAGATT+TGG 0.322185 4_1:+44236347 None:intergenic
GGGTGGTGATCAGGAAAATT+TGG 0.325554 4_1:-44232802 Msa0549220:CDS
GTTATTGTTTGAGTCCTCTT+TGG 0.331275 4_1:+44233226 None:intergenic
TGAAGAACATTTGTTGAAAC+AGG 0.336938 4_1:+44232834 None:intergenic
ATAGTAGCTGTTTGACTATA+GGG 0.362893 4_1:-44232638 Msa0549220:three_prime_UTR
CATTATTGGAATAGCATACT+TGG 0.366602 4_1:-44232738 Msa0549220:CDS
TATAGTAGCTGTTTGACTAT+AGG 0.367948 4_1:-44232639 Msa0549220:three_prime_UTR
ATGAACTTTGCCATGCTTTG+AGG 0.375041 4_1:+44233273 None:intergenic
TGGAGATTCAATATCATCAT+TGG 0.381293 4_1:+44233166 None:intergenic
CCAATGATGATGATGAGATA+TGG 0.393529 4_1:-44233010 Msa0549220:CDS
TTCATGCCCTTCTTGGAAAC+AGG 0.394656 4_1:-44236126 Msa0549220:intron
ACAATGAGATCAAGAACTAT+TGG 0.395892 4_1:-44233589 Msa0549220:CDS
AAGAAAAGACTAACAAGAAT+GGG 0.399087 4_1:-44233554 Msa0549220:CDS
TTGGTGCTACTACCAGTTGT+GGG 0.400406 4_1:+44233497 None:intergenic
TCTTCCAGTTTCTGCTCCTA+TGG 0.401490 4_1:-44233087 Msa0549220:CDS
CCCATTGAGCCATGTGGCTA+AGG 0.403768 4_1:+44233462 None:intergenic
TCTTGGAAGTTGAGCTGCTA+TGG 0.403900 4_1:+44233619 None:intergenic
AGTTCTTGAGGGTGGTGATC+AGG 0.406530 4_1:-44232811 Msa0549220:CDS
AAAGGAAGCAATGTTGTTCC+AGG 0.407247 4_1:+44233125 None:intergenic
CCTTAGCCACATGGCTCAAT+GGG 0.408477 4_1:-44233462 Msa0549220:CDS
CCATATCTCATCATCATCAT+TGG 0.411752 4_1:+44233010 None:intergenic
TCAAAGCATGGCAAAGTTCA+TGG 0.422135 4_1:-44233271 Msa0549220:CDS
TTTGCCATAGGAGCAGAAAC+TGG 0.426377 4_1:+44233083 None:intergenic
TCTTGCAGGTGGCTGTGGTT+TGG 0.436301 4_1:+44233355 None:intergenic
ACATCCACTTTGAACTTCCC+TGG 0.436918 4_1:-44233143 Msa0549220:CDS
TGGTCTTCCTCAGGAGTCCA+TGG 0.445498 4_1:+44236426 None:intergenic
TGCAGGTGGCTGTGGTTTGG+AGG 0.449544 4_1:+44233358 None:intergenic
TCAATGGGAGAGTGCTCGTT+TGG 0.451606 4_1:-44233447 Msa0549220:CDS
ACCTTAGCCACATGGCTCAA+TGG 0.458955 4_1:-44233463 Msa0549220:CDS
TAAGAAAAGACTAACAAGAA+TGG 0.460689 4_1:-44233555 Msa0549220:CDS
AGAGGAACAGAAAGAGGTAA+AGG 0.463876 4_1:+44233107 None:intergenic
ATAATGAAGCTATAGATCAT+AGG 0.468681 4_1:-44232676 Msa0549220:three_prime_UTR
AATGTTCTTCAAGTTCTTGA+GGG 0.469624 4_1:-44232822 Msa0549220:CDS
TCACCTTTCTGTGAGAAAGT+TGG 0.471226 4_1:-44236462 Msa0549220:CDS
AAAAGTCTTGCAGGTGGCTG+TGG 0.471467 4_1:+44233350 None:intergenic
TATTTACCTGTTTCCAAGAA+GGG 0.477583 4_1:+44236120 None:intergenic
GGAAGTAAACTTTGATTGAG+TGG 0.486242 4_1:+44233047 None:intergenic
AATCCAACTTTCTCACAGAA+AGG 0.486486 4_1:+44236459 None:intergenic
CTCCCAAAACATTCACGTGC+TGG 0.489660 4_1:-44236522 Msa0549220:five_prime_UTR
TTTGGTGCTACTACCAGTTG+TGG 0.499502 4_1:+44233496 None:intergenic
ACTAAGCATAACACAGAAGC+TGG 0.503690 4_1:-44232972 Msa0549220:CDS
AAATGTTCTTCAAGTTCTTG+AGG 0.511287 4_1:-44232823 Msa0549220:CDS
GAGAAAGTTGGATTGAAGAA+AGG 0.514106 4_1:-44236450 Msa0549220:CDS
TATATTGAAGAATTTGGTCA+TGG 0.517029 4_1:-44236390 Msa0549220:CDS
GAAAGAGCTGCAGACTAAGA+TGG 0.517757 4_1:-44236219 Msa0549220:CDS
ACTGGAAGAGGAACAGAAAG+AGG 0.527531 4_1:+44233101 None:intergenic
TGATGATATTATGGCGGCTG+TGG 0.535815 4_1:-44232904 Msa0549220:CDS
TCAATATTATTGTTTGCCAT+AGG 0.538126 4_1:+44233071 None:intergenic
ATAAAAGGGCTTCAAAGATG+TGG 0.553160 4_1:-44236241 Msa0549220:intron
AGTTGATAATAATGCAATGT+CGG 0.557474 4_1:-44232590 Msa0549220:three_prime_UTR
GGGAAGTTCAAAGTGGATGT+TGG 0.558335 4_1:+44233146 None:intergenic
TCAAGACAAGGTGGAAGTGA+AGG 0.564353 4_1:+44233299 None:intergenic
GTATTTACCTGTTTCCAAGA+AGG 0.577278 4_1:+44236119 None:intergenic
GTTCTTCAAGTTCTTGAGGG+TGG 0.594370 4_1:-44232819 Msa0549220:CDS
GGTGATCAGGAAAATTTGGA+TGG 0.594953 4_1:-44232798 Msa0549220:CDS
CTCAGCAAACCTTAGCCACA+TGG 0.601865 4_1:-44233471 Msa0549220:CDS
AGAACATTTGTTGAAACAGG+AGG 0.603056 4_1:+44232837 None:intergenic
TGGTGCTACTACCAGTTGTG+GGG 0.604408 4_1:+44233498 None:intergenic
ATAGGAGCAGAAACTGGAAG+AGG 0.612177 4_1:+44233089 None:intergenic
AAATACCAACCAGATTTGGA+AGG 0.621794 4_1:+44236351 None:intergenic
GTCTTGATATCCTCAAAGCA+TGG 0.625732 4_1:-44233283 Msa0549220:CDS
GTGGAAGCATTTAGAGCAAG+CGG 0.626593 4_1:-44232885 Msa0549220:CDS
CACTCTCCCATTGAGCCATG+TGG 0.631905 4_1:+44233456 None:intergenic
TTGGATTGAAGAAAGGACCA+TGG 0.646456 4_1:-44236443 Msa0549220:CDS
GAAGCATTTAGAGCAAGCGG+TGG 0.653606 4_1:-44232882 Msa0549220:CDS
GGAAGTGAAGGTTGAATCAG+TGG 0.655194 4_1:+44233311 None:intergenic
AAGGAAGCAATGTTGTTCCA+GGG 0.660492 4_1:+44233126 None:intergenic
AGAAAAGACTAACAAGAATG+GGG 0.662196 4_1:-44233553 Msa0549220:CDS
GAAAGGACCATGGACTCCTG+AGG 0.668803 4_1:-44236433 Msa0549220:CDS
TGTTCCAGGGAAGTTCAAAG+TGG 0.675761 4_1:+44233139 None:intergenic
GCAAGATGATGATATTATGG+CGG 0.691629 4_1:-44232910 Msa0549220:CDS
TTGAGGATATCAAGACAAGG+TGG 0.701426 4_1:+44233290 None:intergenic
GCTTTGAGGATATCAAGACA+AGG 0.746052 4_1:+44233287 None:intergenic
GATGTGTAACGTGAATCTCG+AGG 0.750691 4_1:-44232769 Msa0549220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAAAAAATTATAAAT+GGG + chr4_1:44233226-44233245 None:intergenic 0.0%
!! TATTATTAAAAAATTATAAA+TGG + chr4_1:44233227-44233246 None:intergenic 0.0%
!!! TTATAATTTTAATATTTTTT+CGG - chr4_1:44234314-44234333 Msa0549220:intron 0.0%
!!! TAAATTTTTTTGTTTGAAAA+TGG - chr4_1:44233658-44233677 Msa0549220:intron 10.0%
!!! TTTTTTATTTTTTAATTACG+TGG + chr4_1:44233779-44233798 None:intergenic 10.0%
!!! TATAATTTTCAGATTTTTTT+CGG + chr4_1:44233871-44233890 None:intergenic 10.0%
!!! AATTTATTTTCAGATTTTTT+CGG + chr4_1:44233829-44233848 None:intergenic 10.0%
!!! AAATTTATTTTCAGATTTTT+CGG - chr4_1:44234284-44234303 Msa0549220:intron 10.0%
!!! AAATTTATTTTCAGATTTTT+CGG - chr4_1:44234284-44234303 Msa0549220:intron 10.0%
!!! TCAAATAAAAATTTTTTTAC+AGG - chr4_1:44234587-44234606 Msa0549220:intron 10.0%
!!! CAAATAAAAATTTTTTTACA+GGG - chr4_1:44234588-44234607 Msa0549220:intron 10.0%
!! TGAAAAATAAATAATTAATG+TGG - chr4_1:44235028-44235047 Msa0549220:intron 10.0%
!!! TTTTTAATATTAAAAGAGTG+CGG - chr4_1:44233350-44233369 Msa0549220:CDS 15.0%
!!! AGTATATTAAGCTTTTATAT+AGG - chr4_1:44233552-44233571 Msa0549220:CDS 15.0%
!! TTCAAACAAAAAAATTTACA+GGG + chr4_1:44233656-44233675 None:intergenic 15.0%
!! TTTCAAACAAAAAAATTTAC+AGG + chr4_1:44233657-44233676 None:intergenic 15.0%
!!! TAAATTTTTTCGAAAAACAA+TGG - chr4_1:44234048-44234067 Msa0549220:intron 15.0%
!!! AATTCAAACTTTTTTTTTAC+AGG - chr4_1:44234615-44234634 Msa0549220:intron 15.0%
!!! ATTCAAACTTTTTTTTTACA+GGG - chr4_1:44234616-44234635 Msa0549220:intron 15.0%
!! GTAACATATCAATATATAAA+AGG + chr4_1:44234691-44234710 None:intergenic 15.0%
!!! ACTTAAATAATTTAGTTTTC+TGG + chr4_1:44234792-44234811 None:intergenic 15.0%
!!! ACTTAAATTTTTCCATTAAA+GGG - chr4_1:44235302-44235321 Msa0549220:intron 15.0%
!! CTAATGGAAAAATTTAAAAA+GGG + chr4_1:44235450-44235469 None:intergenic 15.0%
!! ACTAATGGAAAAATTTAAAA+AGG + chr4_1:44235451-44235470 None:intergenic 15.0%
!! ATAGCTTATATTGAAGAATT+TGG - chr4_1:44232770-44232789 Msa0549220:CDS 20.0%
!!! TTTTAATATTAAAAGAGTGC+GGG - chr4_1:44233351-44233370 Msa0549220:CDS 20.0%
!!! TTCAAACTTTTTTTTTGACA+GGG + chr4_1:44233627-44233646 None:intergenic 20.0%
!!! ATTCAAACTTTTTTTTTGAC+AGG + chr4_1:44233628-44233647 None:intergenic 20.0%
!!! ATACAGAGTATTGTTTATAT+TGG + chr4_1:44235116-44235135 None:intergenic 20.0%
!!! TTTTATAAGTTGAATATGCA+AGG + chr4_1:44235238-44235257 None:intergenic 20.0%
!!! TTACTTTTACTTTTTCTTAG+TGG - chr4_1:44235279-44235298 Msa0549220:intron 20.0%
!!! GACTTAAATTTTTCCATTAA+AGG - chr4_1:44235301-44235320 Msa0549220:intron 20.0%
!!! CTTAAATTTTTCCATTAAAG+GGG - chr4_1:44235303-44235322 Msa0549220:intron 20.0%
!! CAATATAAGCTATGAGTTTT+TGG + chr4_1:44232763-44232782 None:intergenic 25.0%
! TATATTGAAGAATTTGGTCA+TGG - chr4_1:44232776-44232795 Msa0549220:CDS 25.0%
!! GTTATTGATAGTTGATTAGT+GGG + chr4_1:44233309-44233328 None:intergenic 25.0%
!! AGTTATTGATAGTTGATTAG+TGG + chr4_1:44233310-44233329 None:intergenic 25.0%
!!! ATTAAGGAGAATCTTTTTCA+GGG + chr4_1:44233426-44233445 None:intergenic 25.0%
! TGAAAAAGATTCTCCTTAAT+GGG - chr4_1:44233426-44233445 Msa0549220:CDS 25.0%
! ATAAAAGCTTAATATACTGC+CGG + chr4_1:44233550-44233569 None:intergenic 25.0%
!!! TTTTATTTGAAAATGGTTCC+TGG + chr4_1:44234577-44234596 None:intergenic 25.0%
! TCTGGTGAAATATTGAAATT+AGG + chr4_1:44234774-44234793 None:intergenic 25.0%
! ACTATGTAATCATCTACTAA+TGG + chr4_1:44235466-44235485 None:intergenic 25.0%
!!! TTCTTGTTAGTCTTTTCTTA+AGG + chr4_1:44235611-44235630 None:intergenic 25.0%
! TAAGAAAAGACTAACAAGAA+TGG - chr4_1:44235611-44235630 Msa0549220:intron 25.0%
! AAGAAAAGACTAACAAGAAT+GGG - chr4_1:44235612-44235631 Msa0549220:intron 25.0%
! TCAATATTATTGTTTGCCAT+AGG + chr4_1:44236098-44236117 None:intergenic 25.0%
! ATAATGAAGCTATAGATCAT+AGG - chr4_1:44236490-44236509 Msa0549220:exon 25.0%
ATAGTCTAGAGGTTGAAAAA+TGG - chr4_1:44232676-44232695 Msa0549220:three_prime_UTR 30.0%
TAGTCTAGAGGTTGAAAAAT+GGG - chr4_1:44232677-44232696 Msa0549220:three_prime_UTR 30.0%
GATAAAATACCAACCAGATT+TGG + chr4_1:44232822-44232841 None:intergenic 30.0%
! AACTTTCCTCTTTTTATGTC+TGG + chr4_1:44232988-44233007 None:intergenic 30.0%
TATTTACCTGTTTCCAAGAA+GGG + chr4_1:44233049-44233068 None:intergenic 30.0%
TCTCACACAAAGTTCTTAAA+TGG - chr4_1:44233281-44233300 Msa0549220:CDS 30.0%
! CATTAAGGAGAATCTTTTTC+AGG + chr4_1:44233427-44233446 None:intergenic 30.0%
CTGAAAAAGATTCTCCTTAA+TGG - chr4_1:44233425-44233444 Msa0549220:CDS 30.0%
GAAAAAGATTCTCCTTAATG+GGG - chr4_1:44233427-44233446 Msa0549220:CDS 30.0%
AAAAAGATTCTCCTTAATGG+GGG - chr4_1:44233428-44233447 Msa0549220:CDS 30.0%
CAAAACACGACTATATTACA+GGG + chr4_1:44233596-44233615 None:intergenic 30.0%
TCAAAACACGACTATATTAC+AGG + chr4_1:44233597-44233616 None:intergenic 30.0%
AGAGACTATGAACATCATAT+TGG + chr4_1:44234719-44234738 None:intergenic 30.0%
TAACATACAACTGATCTAAG+TGG - chr4_1:44234862-44234881 Msa0549220:intron 30.0%
TAACATACAACTGATCTAAG+TGG - chr4_1:44234862-44234881 Msa0549220:intron 30.0%
ATGTGGTTAAACGAACTTAA+TGG - chr4_1:44235045-44235064 Msa0549220:intron 30.0%
AAAATTTAAAAAGGGCAACC+CGG + chr4_1:44235442-44235461 None:intergenic 30.0%
ACAATGAGATCAAGAACTAT+TGG - chr4_1:44235577-44235596 Msa0549220:intron 30.0%
AGAAAAGACTAACAAGAATG+GGG - chr4_1:44235613-44235632 Msa0549220:intron 30.0%
!!! TTTTTGGTTTGTGAGTTGTA+GGG + chr4_1:44235644-44235663 None:intergenic 30.0%
TTGTTAAGAAAAAGTCTTGC+AGG + chr4_1:44235828-44235847 None:intergenic 30.0%
!!! TCTTTGGTTGTTGTTGTTTT+TGG + chr4_1:44235927-44235946 None:intergenic 30.0%
AAAAACAACAACAACCAAAG+AGG - chr4_1:44235926-44235945 Msa0549220:intron 30.0%
TGGAGATTCAATATCATCAT+TGG + chr4_1:44236003-44236022 None:intergenic 30.0%
!! TCATTGGTGTTATTGGTTAA+AGG + chr4_1:44236143-44236162 None:intergenic 30.0%
!! ATCATCATCATTGGTGTTAT+TGG + chr4_1:44236150-44236169 None:intergenic 30.0%
TCAGCAAGATGATGATATTA+TGG - chr4_1:44236253-44236272 Msa0549220:intron 30.0%
! TGAAGAACATTTGTTGAAAC+AGG + chr4_1:44236335-44236354 None:intergenic 30.0%
! AAATGTTCTTCAAGTTCTTG+AGG - chr4_1:44236343-44236362 Msa0549220:intron 30.0%
! AATGTTCTTCAAGTTCTTGA+GGG - chr4_1:44236344-44236363 Msa0549220:intron 30.0%
CATTATTGGAATAGCATACT+TGG - chr4_1:44236428-44236447 Msa0549220:CDS 30.0%
TATAGTAGCTGTTTGACTAT+AGG - chr4_1:44236527-44236546 Msa0549220:five_prime_UTR 30.0%
ATAGTAGCTGTTTGACTATA+GGG - chr4_1:44236528-44236547 Msa0549220:five_prime_UTR 30.0%
!! ACTATAGGGAGTACTTAATT+AGG - chr4_1:44236542-44236561 Msa0549220:five_prime_UTR 30.0%
!!! GGTTTTGTTCTATAGTCTAG+AGG - chr4_1:44232665-44232684 Msa0549220:three_prime_UTR 35.0%
AATCCAACTTTCTCACAGAA+AGG + chr4_1:44232710-44232729 None:intergenic 35.0%
GAGAAAGTTGGATTGAAGAA+AGG - chr4_1:44232716-44232735 Msa0549220:CDS 35.0%
AAGAATTTGGTCATGGAAAC+TGG - chr4_1:44232783-44232802 Msa0549220:CDS 35.0%
AAATACCAACCAGATTTGGA+AGG + chr4_1:44232818-44232837 None:intergenic 35.0%
ATAAAAGGGCTTCAAAGATG+TGG - chr4_1:44232925-44232944 Msa0549220:CDS 35.0%
!! AAGAGGAAAGTTTAGTTTGC+AGG - chr4_1:44232996-44233015 Msa0549220:CDS 35.0%
GTATTTACCTGTTTCCAAGA+AGG + chr4_1:44233050-44233069 None:intergenic 35.0%
ATGCTAAGCAATCATTCATG+TGG + chr4_1:44233147-44233166 None:intergenic 35.0%
AAAAATGGATGTCTCCATTG+TGG + chr4_1:44233170-44233189 None:intergenic 35.0%
! ACAATGGAGACATCCATTTT+TGG - chr4_1:44233169-44233188 Msa0549220:CDS 35.0%
!! CAATGGAGACATCCATTTTT+GGG - chr4_1:44233170-44233189 Msa0549220:CDS 35.0%
CCTAGTTAAGTACCCAAAAA+TGG + chr4_1:44233185-44233204 None:intergenic 35.0%
!!! CCATTTTTGGGTACTTAACT+AGG - chr4_1:44233182-44233201 Msa0549220:CDS 35.0%
TTAAAGACCCAGTACCTATT+AGG + chr4_1:44233456-44233475 None:intergenic 35.0%
ATAGTAAGACCATCTCCAAT+GGG + chr4_1:44233490-44233509 None:intergenic 35.0%
!! TTTTGTTTGAAAATGGTCCC+TGG - chr4_1:44233665-44233684 Msa0549220:intron 35.0%
TCAAAACACGCCTATATTAC+AGG - chr4_1:44234646-44234665 Msa0549220:intron 35.0%
CAAAACACGCCTATATTACA+GGG - chr4_1:44234647-44234666 Msa0549220:intron 35.0%
! GATTTTCGTCCCTGTAATAT+AGG + chr4_1:44233584-44233603 None:intergenic 35.0%
TACAACTGATCTAAGTGGTA+AGG - chr4_1:44234867-44234886 Msa0549220:intron 35.0%
TACAACTGATCTAAGTGGTA+AGG - chr4_1:44234867-44234886 Msa0549220:intron 35.0%
TGGTTAAACGAACTTAATGG+TGG - chr4_1:44235048-44235067 Msa0549220:intron 35.0%
AGTGAAGTGTAGATGATTTG+AGG - chr4_1:44235483-44235502 Msa0549220:intron 35.0%
ATCTCATTGTCTGTTCTTCT+TGG + chr4_1:44235567-44235586 None:intergenic 35.0%
!!! GTTTTTGGTTTGTGAGTTGT+AGG + chr4_1:44235645-44235664 None:intergenic 35.0%
TTAAGAAAAAGTCTTGCAGG+TGG + chr4_1:44235825-44235844 None:intergenic 35.0%
!!! GGTTGTTGTTGTTTTTGGTT+TGG + chr4_1:44235922-44235941 None:intergenic 35.0%
GTTATTGTTTGAGTCCTCTT+TGG + chr4_1:44235943-44235962 None:intergenic 35.0%
GGAAGTAAACTTTGATTGAG+TGG + chr4_1:44236122-44236141 None:intergenic 35.0%
CCATATCTCATCATCATCAT+TGG + chr4_1:44236159-44236178 None:intergenic 35.0%
! CCAATGATGATGATGAGATA+TGG - chr4_1:44236156-44236175 Msa0549220:CDS 35.0%
GCAAGATGATGATATTATGG+CGG - chr4_1:44236256-44236275 Msa0549220:intron 35.0%
! AGAACATTTGTTGAAACAGG+AGG + chr4_1:44236332-44236351 None:intergenic 35.0%
TCGAGGAGAATAAGCATTAT+TGG - chr4_1:44236414-44236433 Msa0549220:CDS 35.0%
! AACCAGCACGTGAATGTTTT+GGG + chr4_1:44232649-44232668 None:intergenic 40.0%
! AAACCAGCACGTGAATGTTT+TGG + chr4_1:44232650-44232669 None:intergenic 40.0%
CTAGAGGTTGAAAAATGGGT+AGG - chr4_1:44232681-44232700 Msa0549220:exon 40.0%
TCACCTTTCTGTGAGAAAGT+TGG - chr4_1:44232704-44232723 Msa0549220:CDS 40.0%
TTGGATTGAAGAAAGGACCA+TGG - chr4_1:44232723-44232742 Msa0549220:CDS 40.0%
!!! ATGAGTTTTTGGTCTTCCTC+AGG + chr4_1:44232752-44232771 None:intergenic 40.0%
TATTGCCTTCCAAATCTGGT+TGG - chr4_1:44232810-44232829 Msa0549220:CDS 40.0%
! CTCTTTTTATGTCTGGTCGA+AGG + chr4_1:44232981-44233000 None:intergenic 40.0%
CTTCGACCAGACATAAAAAG+AGG - chr4_1:44232979-44232998 Msa0549220:CDS 40.0%
ATTCAACTTCATGCCCTTCT+TGG - chr4_1:44233033-44233052 Msa0549220:CDS 40.0%
CAACACTCTCTCATATACTC+CGG - chr4_1:44233114-44233133 Msa0549220:CDS 40.0%
TCATTCATGTGGTGACTAAC+CGG + chr4_1:44233136-44233155 None:intergenic 40.0%
TGATTGCTTAGCATCCACAA+TGG - chr4_1:44233153-44233172 Msa0549220:CDS 40.0%
ACTTTGTGTGAGATCTGAGT+TGG + chr4_1:44233274-44233293 None:intergenic 40.0%
TTAATGTCTAACCCTCCCAT+TGG - chr4_1:44233472-44233491 Msa0549220:CDS 40.0%
CATAGTAAGACCATCTCCAA+TGG + chr4_1:44233491-44233510 None:intergenic 40.0%
ATAGTACTCACTCCCTAACT+TGG - chr4_1:44233513-44233532 Msa0549220:CDS 40.0%
GTGGTCAACTTTCCAAGTTA+GGG + chr4_1:44233528-44233547 None:intergenic 40.0%
TAACTTGGAAAGTTGACCAC+CGG - chr4_1:44233528-44233547 Msa0549220:CDS 40.0%
AAAGCTTAATATACTGCCGG+TGG + chr4_1:44233547-44233566 None:intergenic 40.0%
CGTTTCAAAAGTTGCACAGT+CGG + chr4_1:44233738-44233757 None:intergenic 40.0%
!!! ACTGTGCAACTTTTGAAACG+TGG - chr4_1:44233738-44233757 Msa0549220:intron 40.0%
AAAAGGACATGTTGCTCTTG+AGG - chr4_1:44235158-44235177 Msa0549220:intron 40.0%
TTCCATTAAAGGGGAAACCT+TGG - chr4_1:44235312-44235331 Msa0549220:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG - chr4_1:44235348-44235367 Msa0549220:intron 40.0%
ATTGATCATGTGCACACAGA+TGG - chr4_1:44235520-44235539 Msa0549220:intron 40.0%
TTGAGGATATCAAGACAAGG+TGG + chr4_1:44235879-44235898 None:intergenic 40.0%
!! GCTTTGAGGATATCAAGACA+AGG + chr4_1:44235882-44235901 None:intergenic 40.0%
GTCTTGATATCCTCAAAGCA+TGG - chr4_1:44235883-44235902 Msa0549220:intron 40.0%
ATGAACTTTGCCATGCTTTG+AGG + chr4_1:44235896-44235915 None:intergenic 40.0%
TCAAAGCATGGCAAAGTTCA+TGG - chr4_1:44235895-44235914 Msa0549220:intron 40.0%
AAGGAAGCAATGTTGTTCCA+GGG + chr4_1:44236043-44236062 None:intergenic 40.0%
AAAGGAAGCAATGTTGTTCC+AGG + chr4_1:44236044-44236063 None:intergenic 40.0%
AGAGGAACAGAAAGAGGTAA+AGG + chr4_1:44236062-44236081 None:intergenic 40.0%
ACTAAGCATAACACAGAAGC+TGG - chr4_1:44236194-44236213 Msa0549220:CDS 40.0%
GGTGATCAGGAAAATTTGGA+TGG - chr4_1:44236368-44236387 Msa0549220:CDS 40.0%
CGTGTATTGCCTTCCAAATC+TGG - chr4_1:44232806-44232825 Msa0549220:CDS 45.0%
GAAAGAGCTGCAGACTAAGA+TGG - chr4_1:44232947-44232966 Msa0549220:CDS 45.0%
TTCATGCCCTTCTTGGAAAC+AGG - chr4_1:44233040-44233059 Msa0549220:CDS 45.0%
! CGGAGTATATGAGAGAGTGT+TGG + chr4_1:44233116-44233135 None:intergenic 45.0%
! TGTGTGAGATCTGAGTTGGA+GGG + chr4_1:44233270-44233289 None:intergenic 45.0%
! TTGTGTGAGATCTGAGTTGG+AGG + chr4_1:44233271-44233290 None:intergenic 45.0%
TAAGACCCCCCAACTTTAAG+CGG + chr4_1:44233379-44233398 None:intergenic 45.0%
GGGGGTCTTAAATAAGACTC+TGG - chr4_1:44233389-44233408 Msa0549220:CDS 45.0%
CCTATTAGGTACCCCCATTA+AGG + chr4_1:44233442-44233461 None:intergenic 45.0%
!! CCTTAATGGGGGTACCTAAT+AGG - chr4_1:44233439-44233458 Msa0549220:CDS 45.0%
TAAGACCATCTCCAATGGGA+GGG + chr4_1:44233486-44233505 None:intergenic 45.0%
GGTGGTCAACTTTCCAAGTT+AGG + chr4_1:44233529-44233548 None:intergenic 45.0%
TTGGCATGGTATTTGTCACG+TGG - chr4_1:44233706-44233725 Msa0549220:intron 45.0%
GTCATGTGACTGAAAGGTCA+CGG - chr4_1:44235354-44235373 Msa0549220:intron 45.0%
TCATGTGACTGAAAGGTCAC+GGG - chr4_1:44235355-44235374 Msa0549220:intron 45.0%
TTTAAGTCCTGGAAACAGCC+TGG - chr4_1:44235378-44235397 Msa0549220:intron 45.0%
! TTACCCAGTTTTTGCACACC+AGG + chr4_1:44235399-44235418 None:intergenic 45.0%
TGGTGTGCAAAAACTGGGTA+AGG - chr4_1:44235398-44235417 Msa0549220:intron 45.0%
TCTTGGAAGTTGAGCTGCTA+TGG + chr4_1:44235550-44235569 None:intergenic 45.0%
!! TTGGTGCTACTACCAGTTGT+GGG + chr4_1:44235672-44235691 None:intergenic 45.0%
!! TTTGGTGCTACTACCAGTTG+TGG + chr4_1:44235673-44235692 None:intergenic 45.0%
!! GCTAAGGTTTGCTGAGTCTT+TGG + chr4_1:44235691-44235710 None:intergenic 45.0%
GGAAGTGAAGGTTGAATCAG+TGG + chr4_1:44235858-44235877 None:intergenic 45.0%
TCAAGACAAGGTGGAAGTGA+AGG + chr4_1:44235870-44235889 None:intergenic 45.0%
GGGAAGTTCAAAGTGGATGT+TGG + chr4_1:44236023-44236042 None:intergenic 45.0%
ACATCCACTTTGAACTTCCC+TGG - chr4_1:44236023-44236042 Msa0549220:intron 45.0%
TGTTCCAGGGAAGTTCAAAG+TGG + chr4_1:44236030-44236049 None:intergenic 45.0%
ACTGGAAGAGGAACAGAAAG+AGG + chr4_1:44236068-44236087 None:intergenic 45.0%
ATAGGAGCAGAAACTGGAAG+AGG + chr4_1:44236080-44236099 None:intergenic 45.0%
TCTTCCAGTTTCTGCTCCTA+TGG - chr4_1:44236079-44236098 Msa0549220:intron 45.0%
TTTGCCATAGGAGCAGAAAC+TGG + chr4_1:44236086-44236105 None:intergenic 45.0%
TGATGATATTATGGCGGCTG+TGG - chr4_1:44236262-44236281 Msa0549220:intron 45.0%
!! GTGGAAGCATTTAGAGCAAG+CGG - chr4_1:44236281-44236300 Msa0549220:intron 45.0%
! GTTCTTCAAGTTCTTGAGGG+TGG - chr4_1:44236347-44236366 Msa0549220:intron 45.0%
GGGTGGTGATCAGGAAAATT+TGG - chr4_1:44236364-44236383 Msa0549220:CDS 45.0%
GATGTGTAACGTGAATCTCG+AGG - chr4_1:44236397-44236416 Msa0549220:CDS 45.0%
!!! TTTATAAAATTTTTGATAAA+AGG - chr4_1:44232910-44232929 Msa0549220:CDS 5.0%
!!! TTATAAAATTTTTGATAAAA+GGG - chr4_1:44232911-44232930 Msa0549220:CDS 5.0%
!!! AAATTTATTTTAAGATTTTT+CGG + chr4_1:44233902-44233921 None:intergenic 5.0%
!!! TTTTAAAATTTAATATTATG+TGG - chr4_1:44234474-44234493 Msa0549220:intron 5.0%
!!! AAAAAATTTTTATTTGAAAA+TGG + chr4_1:44234584-44234603 None:intergenic 5.0%
!!! ATAACTTTTTATATTAAAAA+AGG - chr4_1:44235141-44235160 Msa0549220:intron 5.0%
CTCCCAAAACATTCACGTGC+TGG - chr4_1:44232644-44232663 Msa0549220:three_prime_UTR 50.0%
AAGACCCCCCAACTTTAAGC+GGG + chr4_1:44233378-44233397 None:intergenic 50.0%
!! TGGGGGTACCTAATAGGTAC+TGG - chr4_1:44233445-44233464 Msa0549220:CDS 50.0%
!! GGGGGTACCTAATAGGTACT+GGG - chr4_1:44233446-44233465 Msa0549220:CDS 50.0%
TCTAACCCTCCCATTGGAGA+TGG - chr4_1:44233478-44233497 Msa0549220:CDS 50.0%
GTAAGACCATCTCCAATGGG+AGG + chr4_1:44233487-44233506 None:intergenic 50.0%
TGCCAAGTCAGCTGAACAGT+GGG + chr4_1:44234550-44234569 None:intergenic 50.0%
ATGCCAAGTCAGCTGAACAG+TGG + chr4_1:44234549-44234568 None:intergenic 50.0%
!! ACTGTTCAGCTGACTTGGCA+TGG - chr4_1:44233692-44233711 Msa0549220:intron 50.0%
ATATTATGTGGCACGCCACG+TGG - chr4_1:44234486-44234505 Msa0549220:intron 50.0%
! ACTGTGCAACTTTTGCCACG+TGG + chr4_1:44234504-44234523 None:intergenic 50.0%
!!! CAGCTGACTTGGCATGGTTT+TGG + chr4_1:44234544-44234563 None:intergenic 50.0%
!! ACTGTTCAGCTGACTTGGCA+TGG + chr4_1:44233692-44233711 None:intergenic 50.0%
ATGCCAAGTCAGCTGAACAG+TGG - chr4_1:44234549-44234568 Msa0549220:intron 50.0%
TGCCAAGTCAGCTGAACAGT+GGG - chr4_1:44234550-44234569 Msa0549220:intron 50.0%
CGCCAAGGTTTCCCCTTTAA+TGG + chr4_1:44235317-44235336 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr4_1:44235332-44235351 None:intergenic 50.0%
AAGGTCACGGGTTTAAGTCC+TGG - chr4_1:44235367-44235386 Msa0549220:intron 50.0%
ACAGCCTGGTGTGCAAAAAC+TGG - chr4_1:44235392-44235411 Msa0549220:intron 50.0%
CAGCCTGGTGTGCAAAAACT+GGG - chr4_1:44235393-44235412 Msa0549220:intron 50.0%
! CCAGTTGTGGGGTCTGTTTT+TGG + chr4_1:44235660-44235679 None:intergenic 50.0%
CCAAAAACAGACCCCACAAC+TGG - chr4_1:44235657-44235676 Msa0549220:intron 50.0%
!! TGGTGCTACTACCAGTTGTG+GGG + chr4_1:44235671-44235690 None:intergenic 50.0%
CTCAGCAAACCTTAGCCACA+TGG - chr4_1:44235695-44235714 Msa0549220:intron 50.0%
ACCTTAGCCACATGGCTCAA+TGG - chr4_1:44235703-44235722 Msa0549220:intron 50.0%
CCTTAGCCACATGGCTCAAT+GGG - chr4_1:44235704-44235723 Msa0549220:intron 50.0%
!! TCAATGGGAGAGTGCTCGTT+TGG - chr4_1:44235719-44235738 Msa0549220:intron 50.0%
AAAAGTCTTGCAGGTGGCTG+TGG + chr4_1:44235819-44235838 None:intergenic 50.0%
! GAAGCATTTAGAGCAAGCGG+TGG - chr4_1:44236284-44236303 Msa0549220:intron 50.0%
AGTTCTTGAGGGTGGTGATC+AGG - chr4_1:44236355-44236374 Msa0549220:intron 50.0%
GAAAGGACCATGGACTCCTG+AGG - chr4_1:44232733-44232752 Msa0549220:CDS 55.0%
TGGTCTTCCTCAGGAGTCCA+TGG + chr4_1:44232743-44232762 None:intergenic 55.0%
TGCGGGTCCCGCTTAAAGTT+GGG - chr4_1:44233368-44233387 Msa0549220:CDS 55.0%
GCCAAGTCAGCTGAACAGTG+GGG + chr4_1:44234551-44234570 None:intergenic 55.0%
!! TTTGAAACGTGGCGCTGACG+TGG - chr4_1:44233749-44233768 Msa0549220:intron 55.0%
CACAGTCAGTAACTGCCACG+TGG - chr4_1:44234518-44234537 Msa0549220:intron 55.0%
!!! TTGGCATGGTTTTGGCCACG+TGG + chr4_1:44234536-44234555 None:intergenic 55.0%
GCCAAGTCAGCTGAACAGTG+GGG - chr4_1:44234551-44234570 Msa0549220:intron 55.0%
! TTGCACACCAGGCTGTTTCC+AGG + chr4_1:44235388-44235407 None:intergenic 55.0%
GCTGCGCGAGATTAATGCAC+CGG - chr4_1:44235420-44235439 Msa0549220:intron 55.0%
CTGCGCGAGATTAATGCACC+GGG - chr4_1:44235421-44235440 Msa0549220:intron 55.0%
CCCATTGAGCCATGTGGCTA+AGG + chr4_1:44235707-44235726 None:intergenic 55.0%
CACTCTCCCATTGAGCCATG+TGG + chr4_1:44235713-44235732 None:intergenic 55.0%
TCTTGCAGGTGGCTGTGGTT+TGG + chr4_1:44235814-44235833 None:intergenic 55.0%
GTGCGGGTCCCGCTTAAAGT+TGG - chr4_1:44233367-44233386 Msa0549220:CDS 60.0%
GCGGGTCCCGCTTAAAGTTG+GGG - chr4_1:44233369-44233388 Msa0549220:CDS 60.0%
CGGGTCCCGCTTAAAGTTGG+GGG - chr4_1:44233370-44233389 Msa0549220:CDS 60.0%
GGGTCCCGCTTAAAGTTGGG+GGG - chr4_1:44233371-44233390 Msa0549220:CDS 60.0%
TCAGCTGAACAGTGGGGCCA+GGG + chr4_1:44234557-44234576 None:intergenic 60.0%
GCCCCACTGTTCAGCTGACT+TGG - chr4_1:44233687-44233706 Msa0549220:intron 60.0%
GCCCCACTGTTCAGCTGACT+TGG + chr4_1:44233687-44233706 None:intergenic 60.0%
AGGGGAAACCTTGGCGCAAC+TGG - chr4_1:44235321-44235340 Msa0549220:intron 60.0%
! TGCAGGTGGCTGTGGTTTGG+AGG + chr4_1:44235811-44235830 None:intergenic 60.0%
GTCAGCTGAACAGTGGGGCC+AGG + chr4_1:44234556-44234575 None:intergenic 65.0%
!! GAAACGTGGCGCTGACGTGG+CGG - chr4_1:44233752-44233771 Msa0549220:intron 65.0%
GTCAGCTGAACAGTGGGGCC+AGG - chr4_1:44234556-44234575 Msa0549220:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 44232590 44236598 44232590 ID=Msa0549220;Name=Msa0549220
chr4_1 mRNA 44232590 44236598 44232590 ID=Msa0549220-mRNA-1;Parent=Msa0549220;Name=Msa0549220-mRNA-1;_AED=0.03;_eAED=0.03;_QI=105|1|1|1|1|1|3|108|404
chr4_1 exon 44232590 44233649 44232590 ID=Msa0549220-mRNA-1:exon:11426;Parent=Msa0549220-mRNA-1
chr4_1 exon 44236127 44236256 44236127 ID=Msa0549220-mRNA-1:exon:11425;Parent=Msa0549220-mRNA-1
chr4_1 exon 44236361 44236598 44236361 ID=Msa0549220-mRNA-1:exon:11424;Parent=Msa0549220-mRNA-1
chr4_1 five_prime_UTR 44236494 44236598 44236494 ID=Msa0549220-mRNA-1:five_prime_utr;Parent=Msa0549220-mRNA-1
chr4_1 CDS 44236361 44236493 44236361 ID=Msa0549220-mRNA-1:cds;Parent=Msa0549220-mRNA-1
chr4_1 CDS 44236127 44236256 44236127 ID=Msa0549220-mRNA-1:cds;Parent=Msa0549220-mRNA-1
chr4_1 CDS 44232698 44233649 44232698 ID=Msa0549220-mRNA-1:cds;Parent=Msa0549220-mRNA-1
chr4_1 three_prime_UTR 44232590 44232697 44232590 ID=Msa0549220-mRNA-1:three_prime_utr;Parent=Msa0549220-mRNA-1
Gene Sequence

>Msa0549220

ATGGGTAGGTCACCTTTCTGTGAGAAAGTTGGATTGAAGAAAGGACCATGGACTCCTGAGGAAGACCAAAAACTCATAGCTTATATTGAAGAATTTGGTCATGGAAACTGGCGTGTATTGCCTTCCAAATCTGGGCTTCAAAGATGTGGAAAGAGCTGCAGACTAAGATGGACTAACTACCTTCGACCAGACATAAAAAGAGGAAAGTTTAGTTTGCAGGAAGAACAAACTATTATTCAACTTCATGCCCTTCTTGGAAACAGATGGTCATCCATAGCAGCTCAACTTCCAAGAAGAACAGACAATGAGATCAAGAACTATTGGAGCACACACCTTAAGAAAAGACTAACAAGAATGGGGATAGACCCTACAACTCACAAACCAAAAACAGACCCCACAACTGGTAGTAGCACCAAAGACTCAGCAAACCTTAGCCACATGGCTCAATGGGAGAGTGCTCGTTTGGAAGCAGAAGCAAGATTTGTTAGAGAATCTAATAAGCTGAAAGCTCAAAGACAACTTGAGTTTGAATCCTCCAAACCACAGCCACCTGCAAGACTTTTTCTTAACAAAATCACACCACTGATTCAACCTTCACTTCCACCTTGTCTTGATATCCTCAAAGCATGGCAAAGTTCATGGTCCAAACCAAAAACAACAACAACCAAAGAGGACTCAAACAATAACAACAACAAAATGCATACTATGTATGCTATGATGTTATCCAATGATGATATTGAATCTCCAACATCCACTTTGAACTTCCCTGGAACAACATTGCTTCCTTTACCTCTTTCTGTTCCTCTTCCAGTTTCTGCTCCTATGGCAAACAATAATATTGAACCACTCAATCAAAGTTTACTTCCTTTAACCAATAACACCAATGATGATGATGAGATATGGAAACAATTCAATTTTACTAAGCATAACACAGAAGCTGGTCGTGATCATGATGACAATAACACTATGTTGAACTTTCAGCAAGATGATGATATTATGGCGGCTGTGGAAGCATTTAGAGCAAGCGGTGGATTTGATAATAATATCAATACACCTCCTGTTTCAACAAATGTTCTTCAAGTTCTTGAGGGTGGTGATCAGGAAAATTTGGATGGAAGCATGATGTGTAACGTGAATCTCGAGGAGAATAAGCATTATTGGAATAGCATACTTGGTTTGATTAATGAATCTGATGATATGAACATTGTTCTATAA
Protein sequence

>Msa0549220

MGRSPFCEKVGLKKGPWTPEEDQKLIAYIEEFGHGNWRVLPSKSGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSSIAAQLPRRTDNEIKNYWSTHLKKRLTRMGIDPTTHKPKTDPTTGSSTKDSANLSHMAQWESARLEAEARFVRESNKLKAQRQLEFESSKPQPPARLFLNKITPLIQPSLPPCLDILKAWQSSWSKPKTTTTKEDSNNNNNKMHTMYAMMLSNDDIESPTSTLNFPGTTLLPLPLSVPLPVSAPMANNNIEPLNQSLLPLTNNTNDDDEIWKQFNFTKHNTEAGRDHDDNNTMLNFQQDDDIMAAVEAFRASGGFDNNINTPPVSTNVLQVLEGGDQENLDGSMMCNVNLEENKHYWNSILGLINESDDMNIVL*