Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549240 | XP_024637513.1 | 86.417 | 508 | 41 | 4 | 1 | 483 | 1 | 505 | 0.0 | 818 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549240 | sp|O94481|TFC5_SCHPO | 50.909 | 55 | 27 | 0 | 342 | 396 | 380 | 434 | 9.76e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549240 | A0A396IBT0 | 86.417 | 508 | 41 | 4 | 1 | 483 | 1 | 505 | 0.0 | 818 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0549240 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0549240 | Msa0604590 | 0.926701 | 3.265257e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549240 | MtrunA17_Chr4g0033581 | 86.417 | 508 | 41 | 4 | 1 | 483 | 1 | 505 | 0.0 | 818 |
| Msa0549240 | MtrunA17_Chr8g0383101 | 55.164 | 397 | 148 | 10 | 113 | 483 | 371 | 763 | 5.01e-92 | 296 |
| Msa0549240 | MtrunA17_Chr8g0383111 | 59.259 | 108 | 42 | 2 | 109 | 215 | 53 | 159 | 8.65e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549240 | AT4G39160.1 | 38.372 | 258 | 137 | 7 | 167 | 415 | 277 | 521 | 4.49e-38 | 147 |
| Msa0549240 | AT4G39160.3 | 38.372 | 258 | 137 | 7 | 167 | 415 | 277 | 521 | 4.49e-38 | 147 |
| Msa0549240 | AT4G39160.2 | 38.372 | 258 | 137 | 7 | 167 | 415 | 277 | 521 | 6.15e-38 | 147 |
Find 110 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTCAATCAATTTCTCTT+AGG | 0.163126 | 4_1:-44259656 | Msa0549240:CDS |
| GGGTTTGAGGTCGCGATTTC+GGG | 0.182182 | 4_1:+44262098 | None:intergenic |
| GTTACAAATTTATGATATAT+TGG | 0.264065 | 4_1:+44257563 | None:intergenic |
| GACCTCAAACCCCAACTTTC+CGG | 0.269030 | 4_1:-44262087 | Msa0549240:five_prime_UTR |
| TCTTGCAATTGCAGAAAATA+AGG | 0.274714 | 4_1:-44259628 | Msa0549240:CDS |
| TCTATATTGTTACAAATATA+AGG | 0.289417 | 4_1:+44259997 | None:intergenic |
| GGGGTTTGAGGTCGCGATTT+CGG | 0.330188 | 4_1:+44262097 | None:intergenic |
| TTTGATTTGTCTTGAATGAT+TGG | 0.332251 | 4_1:+44262052 | None:intergenic |
| CACAGTGGACCAGGCTCTGC+TGG | 0.334784 | 4_1:-44259694 | Msa0549240:intron |
| GTTGAATCATTGTAAAATCT+AGG | 0.346657 | 4_1:+44258739 | None:intergenic |
| AGCGAATCCACCGGAAAGTT+GGG | 0.356355 | 4_1:+44262077 | None:intergenic |
| ACAAGTCACCTAGGGTAAAA+TGG | 0.357410 | 4_1:-44258952 | Msa0549240:CDS |
| TGAGGTCGCGATTTCGGGTT+CGG | 0.362855 | 4_1:+44262103 | None:intergenic |
| CATGCTACCTCGTCTGTAGA+TGG | 0.366233 | 4_1:-44260800 | Msa0549240:CDS |
| CTGCTGGATGATTATGAACT+TGG | 0.367304 | 4_1:-44259678 | Msa0549240:CDS |
| GGCTTCCTGATTTGCATTAG+TGG | 0.370648 | 4_1:+44258428 | None:intergenic |
| CCCGAGACCAACCTCAATAA+TGG | 0.372518 | 4_1:-44260731 | Msa0549240:intron |
| ACCATTATTGAGGTTGGTCT+CGG | 0.372588 | 4_1:+44260730 | None:intergenic |
| CACTTCTGAAGCCAACATTT+AGG | 0.375419 | 4_1:+44260473 | None:intergenic |
| TTCTACCACTAATGCAAATC+AGG | 0.389275 | 4_1:-44258433 | Msa0549240:CDS |
| TTCTCAATCAATTTCTCTTA+GGG | 0.392485 | 4_1:-44259655 | Msa0549240:CDS |
| TACTAGCTTGATCATACTCT+TGG | 0.398834 | 4_1:+44259026 | None:intergenic |
| CACCGGAAAGTTGGGGTTTG+AGG | 0.401753 | 4_1:+44262085 | None:intergenic |
| GTTGGCTTCAGAAGTGCTTC+AGG | 0.403637 | 4_1:-44260466 | Msa0549240:CDS |
| GGGGATTTCTTTCATGATGC+TGG | 0.405910 | 4_1:-44259100 | Msa0549240:CDS |
| AAAAGTTCTCTCATTCTTCT+CGG | 0.409991 | 4_1:-44259813 | Msa0549240:CDS |
| CAGCGAATCCACCGGAAAGT+TGG | 0.412347 | 4_1:+44262076 | None:intergenic |
| ACATAGGCTCTGAAGGAGTT+TGG | 0.412678 | 4_1:-44258762 | Msa0549240:intron |
| TTGAAAATGAGAGTGAAGAG+AGG | 0.421788 | 4_1:+44262193 | None:intergenic |
| GCTATTAATAGTCGTTCATC+AGG | 0.426472 | 4_1:-44258633 | Msa0549240:intron |
| CGTAAAAGATCATCTGTTGC+TGG | 0.432583 | 4_1:-44260129 | Msa0549240:CDS |
| AGAGGGAGGAAAAGAGCAAA+GGG | 0.437515 | 4_1:+44262211 | None:intergenic |
| GTGACTTGTCCCTAAAAGAA+TGG | 0.456507 | 4_1:+44258966 | None:intergenic |
| AACATAACTTACCATTATTG+AGG | 0.456653 | 4_1:+44260720 | None:intergenic |
| AAACTCAAACTCATTAATTG+AGG | 0.471340 | 4_1:-44260040 | Msa0549240:CDS |
| ATTGAGGTTGGTCTCGGGAA+TGG | 0.473304 | 4_1:+44260736 | None:intergenic |
| AGAGTGCATACATTAATTCC+AGG | 0.475172 | 4_1:+44258378 | None:intergenic |
| TTTCATTCCCACAGTGGACC+AGG | 0.476047 | 4_1:-44259703 | Msa0549240:intron |
| CTGTGTTGCTTACCTTCGAT+TGG | 0.477352 | 4_1:+44259467 | None:intergenic |
| CAGTGCTGATGTTAAAGATC+AGG | 0.478050 | 4_1:-44257835 | Msa0549240:CDS |
| AATGGAATGAATGTTGTTCT+CGG | 0.482678 | 4_1:+44260423 | None:intergenic |
| TGACTTGTCCCTAAAAGAAT+GGG | 0.487889 | 4_1:+44258967 | None:intergenic |
| TAACTTACCATTATTGAGGT+TGG | 0.489810 | 4_1:+44260724 | None:intergenic |
| TCAAGACAAATCAAAAGAAA+AGG | 0.491272 | 4_1:-44262044 | Msa0549240:intron |
| CCATTATTGAGGTTGGTCTC+GGG | 0.494784 | 4_1:+44260731 | None:intergenic |
| CATTACTAACCACGTGCAGC+AGG | 0.498380 | 4_1:+44261143 | None:intergenic |
| GCATTAGTGGTAGAAATTTG+TGG | 0.499145 | 4_1:+44258441 | None:intergenic |
| TGTTGCTTACCTTCGATTGG+TGG | 0.499150 | 4_1:+44259470 | None:intergenic |
| TCACTATCATCAGATTGCTC+TGG | 0.502518 | 4_1:+44257789 | None:intergenic |
| TGCAGAAAATAAGGAGCGAC+CGG | 0.506681 | 4_1:-44259619 | Msa0549240:CDS |
| TCATTAATTGAGGATGATGA+TGG | 0.509072 | 4_1:-44260030 | Msa0549240:CDS |
| GATCCATGAGGCAGGTTGGT+TGG | 0.509436 | 4_1:+44261192 | None:intergenic |
| GTGATGATGACTTACAGAAA+TGG | 0.510346 | 4_1:-44257770 | Msa0549240:CDS |
| GAGAGGGAGGAAAAGAGCAA+AGG | 0.514133 | 4_1:+44262210 | None:intergenic |
| ATAGCATCAGTTATTCGTAA+AGG | 0.518506 | 4_1:+44258651 | None:intergenic |
| AAATGAGAGTGAAGAGAGGG+AGG | 0.521330 | 4_1:+44262197 | None:intergenic |
| AAATATTTAGCTGCAGTGGT+GGG | 0.523222 | 4_1:-44259120 | Msa0549240:intron |
| AAATTCAGAAGAGAGGAAGC+AGG | 0.524487 | 4_1:+44262131 | None:intergenic |
| CATATGAAACATCATATACC+TGG | 0.526211 | 4_1:+44257610 | None:intergenic |
| AGGCCAACCAACCTGCCTCA+TGG | 0.528196 | 4_1:-44261195 | Msa0549240:exon |
| TTTAAAATATTTAGCTGCAG+TGG | 0.528589 | 4_1:-44259124 | Msa0549240:intron |
| TGAAAATGAGAGTGAAGAGA+GGG | 0.528633 | 4_1:+44262194 | None:intergenic |
| CATAATCATCCAGCAGAGCC+TGG | 0.529086 | 4_1:+44259685 | None:intergenic |
| GTAATACTTTCTCGAAGTCC+AGG | 0.532042 | 4_1:-44257628 | Msa0549240:three_prime_UTR |
| GGAATGGATTTAGTGACGGT+GGG | 0.535901 | 4_1:+44260752 | None:intergenic |
| AAAATATTTAGCTGCAGTGG+TGG | 0.541517 | 4_1:-44259121 | Msa0549240:intron |
| AATGGATTTAGTGACGGTGG+GGG | 0.543456 | 4_1:+44260754 | None:intergenic |
| CTGTCAAGGAATGCAGTGGA+TGG | 0.545069 | 4_1:+44260535 | None:intergenic |
| CTCTGGACTATGATACGCCA+TGG | 0.555687 | 4_1:+44257806 | None:intergenic |
| AAGATCATCTGTTGCTGGTG+TGG | 0.557955 | 4_1:-44260124 | Msa0549240:CDS |
| ATGCTACCTCGTCTGTAGAT+GGG | 0.560684 | 4_1:-44260799 | Msa0549240:CDS |
| AATATTTAGCTGCAGTGGTG+GGG | 0.567750 | 4_1:-44259119 | Msa0549240:intron |
| GTCAAGGAATGCAGTGGATG+GGG | 0.578734 | 4_1:+44260537 | None:intergenic |
| TTGCAAGACAGCCTAAATGT+TGG | 0.580193 | 4_1:-44260484 | Msa0549240:CDS |
| TCTATAATTCAGATAAGAGA+GGG | 0.581623 | 4_1:+44262164 | None:intergenic |
| AAAAGATCCATGAGGCAGGT+TGG | 0.585641 | 4_1:+44261188 | None:intergenic |
| TTTATTAGGATGCTAATGAG+AGG | 0.585716 | 4_1:-44260170 | Msa0549240:intron |
| GAATGGATTTAGTGACGGTG+GGG | 0.591826 | 4_1:+44260753 | None:intergenic |
| ACTACTGAAGACATGTCACC+TGG | 0.592887 | 4_1:-44258396 | Msa0549240:CDS |
| CTCGGGAATGGATTTAGTGA+CGG | 0.594357 | 4_1:+44260748 | None:intergenic |
| GCGAATCCACCGGAAAGTTG+GGG | 0.594414 | 4_1:+44262078 | None:intergenic |
| AAATGATGACGAGGACGAAG+TGG | 0.594931 | 4_1:-44259962 | Msa0549240:CDS |
| GTCTTCAGTAGTGTCTTCAG+TGG | 0.600402 | 4_1:+44258407 | None:intergenic |
| CTCAAACCCCAACTTTCCGG+TGG | 0.601709 | 4_1:-44262084 | Msa0549240:five_prime_UTR |
| TGCTGATGTTAAAGATCAGG+AGG | 0.606209 | 4_1:-44257832 | Msa0549240:CDS |
| TTCTATAATTCAGATAAGAG+AGG | 0.608069 | 4_1:+44262163 | None:intergenic |
| CAAAATCTTCCACCAATCGA+AGG | 0.613148 | 4_1:-44259479 | Msa0549240:intron |
| GGGAATGGATTTAGTGACGG+TGG | 0.613872 | 4_1:+44260751 | None:intergenic |
| CTTGAAGCTCCTGCTGCACG+TGG | 0.616756 | 4_1:-44261152 | Msa0549240:intron |
| TGTCAAGGAATGCAGTGGAT+GGG | 0.621373 | 4_1:+44260536 | None:intergenic |
| AATTCAGAAGAGAGGAAGCA+GGG | 0.622815 | 4_1:+44262132 | None:intergenic |
| AGAGCAAAGGGTGAGAAACA+AGG | 0.631128 | 4_1:+44262223 | None:intergenic |
| ATCATCTGTTGCTGGTGTGG+AGG | 0.632127 | 4_1:-44260121 | Msa0549240:CDS |
| ATATTGTTACAAATATAAGG+AGG | 0.636102 | 4_1:+44260000 | None:intergenic |
| GGCTGCGAAATTCAGAAGAG+AGG | 0.638717 | 4_1:+44262124 | None:intergenic |
| TAAAGATCAGGAGGATCCCA+TGG | 0.641855 | 4_1:-44257823 | Msa0549240:CDS |
| AGAAAATAAGGAGCGACCGG+AGG | 0.647366 | 4_1:-44259616 | Msa0549240:intron |
| AGAATGGGAATTGTATAAAG+CGG | 0.648772 | 4_1:+44258982 | None:intergenic |
| GTTGCTGTCAAGGAATGCAG+TGG | 0.651362 | 4_1:+44260531 | None:intergenic |
| TATTGTTACAAATATAAGGA+GGG | 0.653546 | 4_1:+44260001 | None:intergenic |
| TACTTCCGGAAAAGTACAAG+AGG | 0.653833 | 4_1:-44260398 | Msa0549240:intron |
| TCTGGACTATGATACGCCAT+GGG | 0.656583 | 4_1:+44257807 | None:intergenic |
| TGATTGGACAGCGAATCCAC+CGG | 0.662198 | 4_1:+44262068 | None:intergenic |
| AGAGGTTGCAACAACTGAGG+AGG | 0.662600 | 4_1:-44257859 | Msa0549240:CDS |
| ATGACCGTGATAAAAGCTCA+AGG | 0.662857 | 4_1:-44260098 | Msa0549240:CDS |
| TTATTCGTAAAGGATGATGT+CGG | 0.671321 | 4_1:+44258661 | None:intergenic |
| GGAAGAGGTTGCAACAACTG+AGG | 0.674245 | 4_1:-44257862 | Msa0549240:CDS |
| TGCTGGTGCTAATAGTGAAG+AGG | 0.679934 | 4_1:-44259083 | Msa0549240:CDS |
| ACTTGAAGAAAATGATGACG+AGG | 0.685696 | 4_1:-44259971 | Msa0549240:CDS |
| GTTCTTCCCATCTACAGACG+AGG | 0.708904 | 4_1:+44260793 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATTAAATTAATTAAGA+TGG | + | chr4_1:44258602-44258621 | None:intergenic | 10.0% |
| !!! | TTATTTTTTATTTATACGTA+CGG | - | chr4_1:44258714-44258733 | Msa0549240:CDS | 10.0% |
| !!! | TTTCATTTGTAATTTTTATT+AGG | - | chr4_1:44259634-44259653 | Msa0549240:CDS | 10.0% |
| !! | TTAAAAAAATATAATTGACA+AGG | + | chr4_1:44260527-44260546 | None:intergenic | 10.0% |
| !!! | GTTTTTTATTTTTCAAAACT+TGG | - | chr4_1:44257852-44257871 | Msa0549240:CDS | 15.0% |
| !!! | CTTAATTAATTTAATTTCTC+AGG | - | chr4_1:44258603-44258622 | Msa0549240:intron | 15.0% |
| !!! | AGTTAAATTTGCTTATATTT+AGG | + | chr4_1:44258781-44258800 | None:intergenic | 15.0% |
| !!! | ATAAGCAAATTTAACTTTTT+AGG | - | chr4_1:44258785-44258804 | Msa0549240:intron | 15.0% |
| !! | TCTATATTGTTACAAATATA+AGG | + | chr4_1:44259824-44259843 | None:intergenic | 15.0% |
| !! | AATATAAATCTATTTACTAC+TGG | + | chr4_1:44260669-44260688 | None:intergenic | 15.0% |
| !!! | CTATGTTTTAAAAAAATGAA+TGG | + | chr4_1:44261042-44261061 | None:intergenic | 15.0% |
| !!! | CATTCATTTTTTTAAAACAT+AGG | - | chr4_1:44261040-44261059 | Msa0549240:intron | 15.0% |
| !!! | TTGTTTTGTTTTATATTTTG+AGG | - | chr4_1:44261467-44261486 | Msa0549240:intron | 15.0% |
| !! | ATATTAAGGTTTAAATTACA+TGG | + | chr4_1:44261667-44261686 | None:intergenic | 15.0% |
| !! | TAAGAAATATTACAATTATG+TGG | + | chr4_1:44261885-44261904 | None:intergenic | 15.0% |
| !! | ATTGTGATCAAATAAGTTTA+GGG | + | chr4_1:44257815-44257834 | None:intergenic | 20.0% |
| !!! | TTTATTTTTCAAAACTTGGT+TGG | - | chr4_1:44257856-44257875 | Msa0549240:CDS | 20.0% |
| !! | TGTTTATCATGTTTACTTAA+TGG | - | chr4_1:44258490-44258509 | Msa0549240:intron | 20.0% |
| !!! | AGTCAAATTTGCTTATATTT+AGG | - | chr4_1:44258878-44258897 | Msa0549240:intron | 20.0% |
| !!! | ATTATATTCTTTTTGTAGCT+CGG | - | chr4_1:44258926-44258945 | Msa0549240:CDS | 20.0% |
| !! | TATTGTTACAAATATAAGGA+GGG | + | chr4_1:44259820-44259839 | None:intergenic | 20.0% |
| !! | ATATTGTTACAAATATAAGG+AGG | + | chr4_1:44259821-44259840 | None:intergenic | 20.0% |
| !! | AAGTTCAAAAAAGAAATATG+TGG | - | chr4_1:44259910-44259929 | Msa0549240:CDS | 20.0% |
| !!! | ATTACTAATTTTGTCTTTTC+TGG | - | chr4_1:44260975-44260994 | Msa0549240:intron | 20.0% |
| !!! | ATGATTCAACAAATTTTTTC+TGG | - | chr4_1:44261092-44261111 | Msa0549240:intron | 20.0% |
| !!! | AGATCATCATATTTTTAAGT+CGG | - | chr4_1:44261340-44261359 | Msa0549240:intron | 20.0% |
| ! | TCTATAATTCAGATAAGAGA+GGG | + | chr4_1:44257657-44257676 | None:intergenic | 25.0% |
| ! | TTCTATAATTCAGATAAGAG+AGG | + | chr4_1:44257658-44257677 | None:intergenic | 25.0% |
| !!! | TTTGATTTGTCTTGAATGAT+TGG | + | chr4_1:44257769-44257788 | None:intergenic | 25.0% |
| ! | TCAAGACAAATCAAAAGAAA+AGG | - | chr4_1:44257774-44257793 | Msa0549240:CDS | 25.0% |
| ! | GATTGTGATCAAATAAGTTT+AGG | + | chr4_1:44257816-44257835 | None:intergenic | 25.0% |
| ! | CTCATATTATAGTAAGGTAT+TGG | + | chr4_1:44257911-44257930 | None:intergenic | 25.0% |
| ! | ATACCTTACTATAATATGAG+TGG | - | chr4_1:44257911-44257930 | Msa0549240:intron | 25.0% |
| !! | TTTTGCTAATTAAAGTAGAC+AGG | + | chr4_1:44258281-44258300 | None:intergenic | 25.0% |
| ! | AAGTCAGCAATATAATATGT+TGG | + | chr4_1:44258461-44258480 | None:intergenic | 25.0% |
| ! | TATAATTATAATACTCCCTC+CGG | - | chr4_1:44258754-44258773 | Msa0549240:CDS | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | + | chr4_1:44258883-44258902 | None:intergenic | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | - | chr4_1:44258810-44258829 | Msa0549240:intron | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | - | chr4_1:44258883-44258902 | Msa0549240:intron | 25.0% |
| ! | AACATAACTTACCATTATTG+AGG | + | chr4_1:44259101-44259120 | None:intergenic | 25.0% |
| ! | CTAGATATGAAATGATTCAA+CGG | + | chr4_1:44259195-44259214 | None:intergenic | 25.0% |
| !!! | ATTCATTCCATTTTTACTTC+CGG | - | chr4_1:44259406-44259425 | Msa0549240:intron | 25.0% |
| ! | TGTAAAAAATCAGCTAATGT+AGG | + | chr4_1:44259513-44259532 | None:intergenic | 25.0% |
| ! | AAACTCAAACTCATTAATTG+AGG | - | chr4_1:44259778-44259797 | Msa0549240:intron | 25.0% |
| ! | AAGAAATATGTGGCTAAAAA+TGG | - | chr4_1:44259920-44259939 | Msa0549240:CDS | 25.0% |
| ! | AAAAAAAGCAAGAAGGAAAA+TGG | - | chr4_1:44259953-44259972 | Msa0549240:CDS | 25.0% |
| ! | TTCTCAATCAATTTCTCTTA+GGG | - | chr4_1:44260163-44260182 | Msa0549240:CDS | 25.0% |
| !! | TCTTAGCAATTGTTATTAGT+AGG | - | chr4_1:44260259-44260278 | Msa0549240:intron | 25.0% |
| !! | AATTGTTATTAGTAGGCTTA+TGG | - | chr4_1:44260266-44260285 | Msa0549240:intron | 25.0% |
| ! | ATGATGGTAAATAAGATGTT+TGG | + | chr4_1:44260646-44260665 | None:intergenic | 25.0% |
| !! | TTTAAAATATTTAGCTGCAG+TGG | - | chr4_1:44260694-44260713 | Msa0549240:intron | 25.0% |
| !! | TATACAATTCCCATTCTTTT+AGG | - | chr4_1:44260842-44260861 | Msa0549240:intron | 25.0% |
| !! | ATACAATTCCCATTCTTTTA+GGG | - | chr4_1:44260843-44260862 | Msa0549240:intron | 25.0% |
| !! | GAATACCTCATAAAACTTTT+CGG | + | chr4_1:44260905-44260924 | None:intergenic | 25.0% |
| !! | ATTTTGTCTTTTCTGGATTT+AGG | - | chr4_1:44260982-44261001 | Msa0549240:intron | 25.0% |
| ! | GTTGAATCATTGTAAAATCT+AGG | + | chr4_1:44261082-44261101 | None:intergenic | 25.0% |
| ! | TAAAATGTTATTCCACATCA+AGG | + | chr4_1:44261291-44261310 | None:intergenic | 25.0% |
| !!! | TTTTGAGGTCTATATTCATT+TGG | - | chr4_1:44261482-44261501 | Msa0549240:intron | 25.0% |
| ! | GATGTTTGTGAGTTAAAATT+TGG | - | chr4_1:44261572-44261591 | Msa0549240:intron | 25.0% |
| ! | GAAGTAAATTTGAGTAACAA+AGG | + | chr4_1:44261645-44261664 | None:intergenic | 25.0% |
| ! | TATACGTTGCTTCTATATTA+AGG | + | chr4_1:44261681-44261700 | None:intergenic | 25.0% |
| !! | TGTATAAAATGGATTCTCAA+GGG | + | chr4_1:44261736-44261755 | None:intergenic | 25.0% |
| !! | TTGTATAAAATGGATTCTCA+AGG | + | chr4_1:44261737-44261756 | None:intergenic | 25.0% |
| !! | TTGAGAATCCATTTTATACA+AGG | - | chr4_1:44261736-44261755 | Msa0549240:intron | 25.0% |
| !! | TGAGAATCCATTTTATACAA+GGG | - | chr4_1:44261737-44261756 | Msa0549240:intron | 25.0% |
| ! | ATATGACGTAAAAACTTTCA+AGG | - | chr4_1:44261788-44261807 | Msa0549240:intron | 25.0% |
| ! | TTCTGAATCTATAATTGAAG+TGG | + | chr4_1:44261847-44261866 | None:intergenic | 25.0% |
| AAGCCACTCATATTATAGTA+AGG | + | chr4_1:44257917-44257936 | None:intergenic | 30.0% | |
| CTTATGTTTAACTATCTCTC+TGG | - | chr4_1:44257946-44257965 | Msa0549240:intron | 30.0% | |
| GTTGTTTGAAGAAATTGAAG+TGG | - | chr4_1:44258087-44258106 | Msa0549240:intron | 30.0% | |
| TTATACTACTCTAAACAGCA+TGG | + | chr4_1:44258126-44258145 | None:intergenic | 30.0% | |
| GTATAATGATTACTCGTGTT+TGG | - | chr4_1:44258140-44258159 | Msa0549240:intron | 30.0% | |
| TTGCAGATTGAATGAAGTTA+GGG | - | chr4_1:44258226-44258245 | Msa0549240:intron | 30.0% | |
| ATAGAGAGGTGGTTTATTTA+AGG | + | chr4_1:44258308-44258327 | None:intergenic | 30.0% | |
| ! | TTTAAAACAGAGAGATAGAG+AGG | + | chr4_1:44258322-44258341 | None:intergenic | 30.0% |
| !! | TTCTGGGTTTTTAACTATTG+CGG | - | chr4_1:44258408-44258427 | Msa0549240:CDS | 30.0% |
| TATCATCAAAAAGATCCATG+AGG | + | chr4_1:44258641-44258660 | None:intergenic | 30.0% | |
| GATGTATGTGGTTCATATTA+TGG | - | chr4_1:44258822-44258841 | Msa0549240:intron | 30.0% | |
| ATATTACATTATACTCCCTC+CGG | + | chr4_1:44258905-44258924 | None:intergenic | 30.0% | |
| TAACTTACCATTATTGAGGT+TGG | + | chr4_1:44259097-44259116 | None:intergenic | 30.0% | |
| ! | GCATTGACAACTATTAAATG+TGG | - | chr4_1:44259214-44259233 | Msa0549240:intron | 30.0% |
| AATGGAATGAATGTTGTTCT+CGG | + | chr4_1:44259398-44259417 | None:intergenic | 30.0% | |
| ! | TACTTTTCCGGAAGTAAAAA+TGG | + | chr4_1:44259416-44259435 | None:intergenic | 30.0% |
| ! | AATGTCTACTTCTTTTCCTA+TGG | + | chr4_1:44259547-44259566 | None:intergenic | 30.0% |
| TTTATTAGGATGCTAATGAG+AGG | - | chr4_1:44259648-44259667 | Msa0549240:CDS | 30.0% | |
| ATGAGAGGAAAAAATCTCTA+AGG | - | chr4_1:44259663-44259682 | Msa0549240:CDS | 30.0% | |
| TCATTAATTGAGGATGATGA+TGG | - | chr4_1:44259788-44259807 | Msa0549240:intron | 30.0% | |
| AGCATACAAAAAAAGCAAGA+AGG | - | chr4_1:44259946-44259965 | Msa0549240:CDS | 30.0% | |
| ! | GAAGAATGAGAGAACTTTTT+GGG | + | chr4_1:44260004-44260023 | None:intergenic | 30.0% |
| ! | AGAAGAATGAGAGAACTTTT+TGG | + | chr4_1:44260005-44260024 | None:intergenic | 30.0% |
| AAAAGTTCTCTCATTCTTCT+CGG | - | chr4_1:44260005-44260024 | Msa0549240:CDS | 30.0% | |
| GTTCTCAATCAATTTCTCTT+AGG | - | chr4_1:44260162-44260181 | Msa0549240:CDS | 30.0% | |
| TCTTGCAATTGCAGAAAATA+AGG | - | chr4_1:44260190-44260209 | Msa0549240:intron | 30.0% | |
| TTGCTAAGAATTGTAACACA+AGG | + | chr4_1:44260248-44260267 | None:intergenic | 30.0% | |
| GTGTATTATCAAAGCAGTAT+TGG | - | chr4_1:44260381-44260400 | Msa0549240:intron | 30.0% | |
| CACACATATCTTAACTTCTT+AGG | + | chr4_1:44260437-44260456 | None:intergenic | 30.0% | |
| AAATCGTGAAAGCTAACAAA+GGG | + | chr4_1:44260500-44260519 | None:intergenic | 30.0% | |
| TAAATCGTGAAAGCTAACAA+AGG | + | chr4_1:44260501-44260520 | None:intergenic | 30.0% | |
| ATCTATTTACTACTGGATGA+TGG | + | chr4_1:44260662-44260681 | None:intergenic | 30.0% | |
| !!! | ACTTTTAGTTCAGATGATGA+TGG | - | chr4_1:44260760-44260779 | Msa0549240:CDS | 30.0% |
| AGAATGGGAATTGTATAAAG+CGG | + | chr4_1:44260839-44260858 | None:intergenic | 30.0% | |
| !! | AGATACCGAAAAGTTTTATG+AGG | - | chr4_1:44260897-44260916 | Msa0549240:intron | 30.0% |
| !!! | TTTTAAAACATAGGCTCTGA+AGG | - | chr4_1:44261049-44261068 | Msa0549240:intron | 30.0% |
| TTATTCGTAAAGGATGATGT+CGG | + | chr4_1:44261160-44261179 | None:intergenic | 30.0% | |
| ATAGCATCAGTTATTCGTAA+AGG | + | chr4_1:44261170-44261189 | None:intergenic | 30.0% | |
| TCATATAGTACATGATCAGT+AGG | - | chr4_1:44261244-44261263 | Msa0549240:intron | 30.0% | |
| CATATAGTACATGATCAGTA+GGG | - | chr4_1:44261245-44261264 | Msa0549240:intron | 30.0% | |
| !!! | CCAAGTAAAAGTGCTAATTT+TGG | + | chr4_1:44261616-44261635 | None:intergenic | 30.0% |
| ! | CCAAAATTAGCACTTTTACT+TGG | - | chr4_1:44261613-44261632 | Msa0549240:intron | 30.0% |
| TGTTGTTCCCTTGTATAAAA+TGG | + | chr4_1:44261747-44261766 | None:intergenic | 30.0% | |
| GTCATATCACATATACATGA+TGG | + | chr4_1:44261775-44261794 | None:intergenic | 30.0% | |
| ATATGTGTCTTTATTGTGCT+AGG | + | chr4_1:44261819-44261838 | None:intergenic | 30.0% | |
| AAGAGTCTTGAATATTTGCA+AGG | + | chr4_1:44261920-44261939 | None:intergenic | 30.0% | |
| CATATGAAACATCATATACC+TGG | + | chr4_1:44262211-44262230 | None:intergenic | 30.0% | |
| TGAAAATGAGAGTGAAGAGA+GGG | + | chr4_1:44257627-44257646 | None:intergenic | 35.0% | |
| TTGAAAATGAGAGTGAAGAG+AGG | + | chr4_1:44257628-44257647 | None:intergenic | 35.0% | |
| !! | AACGAGAATGATGGATACAT+TGG | + | chr4_1:44258006-44258025 | None:intergenic | 35.0% |
| AAGCATGTAAACGAGAATGA+TGG | + | chr4_1:44258015-44258034 | None:intergenic | 35.0% | |
| CTTGCAGATTGAATGAAGTT+AGG | - | chr4_1:44258225-44258244 | Msa0549240:intron | 35.0% | |
| !! | GTTTTAAATTCAAACCACGC+CGG | - | chr4_1:44258334-44258353 | Msa0549240:intron | 35.0% |
| AATCACATAGAAGACATAGC+CGG | + | chr4_1:44258356-44258375 | None:intergenic | 35.0% | |
| !! | TCCTGGTTTTCGATTTTTCT+GGG | - | chr4_1:44258392-44258411 | Msa0549240:CDS | 35.0% |
| CGGACGCTATTACATTAATA+AGG | - | chr4_1:44258428-44258447 | Msa0549240:CDS | 35.0% | |
| CGTAAGCAATAAACTGGAAA+GGG | + | chr4_1:44258528-44258547 | None:intergenic | 35.0% | |
| CCTTTCCAGTTTATTGCTTA+CGG | - | chr4_1:44258526-44258545 | Msa0549240:intron | 35.0% | |
| !!! | GACTGTTTTGATTTGACCTT+CGG | + | chr4_1:44258970-44258989 | None:intergenic | 35.0% |
| ATCAAAACAGTCCTTACGAA+AGG | - | chr4_1:44258978-44258997 | Msa0549240:CDS | 35.0% | |
| TGCAGATATTTCCTTTCGTA+AGG | + | chr4_1:44258992-44259011 | None:intergenic | 35.0% | |
| ! | TTCTACCTCTTGTACTTTTC+CGG | + | chr4_1:44259428-44259447 | None:intergenic | 35.0% |
| AATCAGCTAATGTAGGACTA+CGG | + | chr4_1:44259506-44259525 | None:intergenic | 35.0% | |
| ! | ACTTGAAGAAAATGATGACG+AGG | - | chr4_1:44259847-44259866 | Msa0549240:CDS | 35.0% |
| ! | AAGTATTTTCATTCCCACAG+TGG | - | chr4_1:44260109-44260128 | Msa0549240:CDS | 35.0% |
| TTTCTGCATAGGGAAACAAA+TGG | + | chr4_1:44260312-44260331 | None:intergenic | 35.0% | |
| TTGTTTCCCTATGCAGAAAA+AGG | - | chr4_1:44260313-44260332 | Msa0549240:intron | 35.0% | |
| TCGTTGTATGTGATTGAGAT+AGG | - | chr4_1:44260462-44260481 | Msa0549240:CDS | 35.0% | |
| AAAATATTTAGCTGCAGTGG+TGG | - | chr4_1:44260697-44260716 | Msa0549240:intron | 35.0% | |
| AAATATTTAGCTGCAGTGGT+GGG | - | chr4_1:44260698-44260717 | Msa0549240:intron | 35.0% | |
| ! | TACTAGCTTGATCATACTCT+TGG | + | chr4_1:44260795-44260814 | None:intergenic | 35.0% |
| ! | TGACTTGTCCCTAAAAGAAT+GGG | + | chr4_1:44260854-44260873 | None:intergenic | 35.0% |
| ! | GTCTTTTCTGGATTTAGGAA+TGG | - | chr4_1:44260987-44261006 | Msa0549240:intron | 35.0% |
| GCTATTAATAGTCGTTCATC+AGG | - | chr4_1:44261185-44261204 | Msa0549240:exon | 35.0% | |
| TCTTTATCTACTCCTTGATG+TGG | - | chr4_1:44261276-44261295 | Msa0549240:intron | 35.0% | |
| GCATTAGTGGTAGAAATTTG+TGG | + | chr4_1:44261380-44261399 | None:intergenic | 35.0% | |
| TTCTACCACTAATGCAAATC+AGG | - | chr4_1:44261385-44261404 | Msa0549240:intron | 35.0% | |
| AGAGTGCATACATTAATTCC+AGG | + | chr4_1:44261443-44261462 | None:intergenic | 35.0% | |
| ! | GTGATGATGACTTACAGAAA+TGG | - | chr4_1:44262048-44262067 | Msa0549240:five_prime_UTR | 35.0% |
| AATTCAGAAGAGAGGAAGCA+GGG | + | chr4_1:44257689-44257708 | None:intergenic | 40.0% | |
| AAATTCAGAAGAGAGGAAGC+AGG | + | chr4_1:44257690-44257709 | None:intergenic | 40.0% | |
| GATTGAATGAAGTTAGGGCA+AGG | - | chr4_1:44258231-44258250 | Msa0549240:intron | 40.0% | |
| AAGTTAGGGCAAGGATGTAA+AGG | - | chr4_1:44258240-44258259 | Msa0549240:intron | 40.0% | |
| AAAACAGAGAGATAGAGAGG+TGG | + | chr4_1:44258319-44258338 | None:intergenic | 40.0% | |
| !! | GTCCTGGTTTTCGATTTTTC+TGG | - | chr4_1:44258391-44258410 | Msa0549240:CDS | 40.0% |
| ACCCAGAAAAATCGAAAACC+AGG | + | chr4_1:44258396-44258415 | None:intergenic | 40.0% | |
| CCGTAAGCAATAAACTGGAA+AGG | + | chr4_1:44258529-44258548 | None:intergenic | 40.0% | |
| CCATACCGTAAGCAATAAAC+TGG | + | chr4_1:44258534-44258553 | None:intergenic | 40.0% | |
| CCAGTTTATTGCTTACGGTA+TGG | - | chr4_1:44258531-44258550 | Msa0549240:intron | 40.0% | |
| ATCAAAAAGATCCATGAGGC+AGG | + | chr4_1:44258637-44258656 | None:intergenic | 40.0% | |
| ACGTACGGTTGTTATGTACT+TGG | - | chr4_1:44258729-44258748 | Msa0549240:CDS | 40.0% | |
| ! | TGCTTATATTTAGGACCGGA+GGG | + | chr4_1:44258887-44258906 | None:intergenic | 40.0% |
| ! | TTGCTTATATTTAGGACCGG+AGG | + | chr4_1:44258886-44258905 | None:intergenic | 40.0% |
| ! | TTGCTTATATTTAGGACCGG+AGG | - | chr4_1:44258886-44258905 | Msa0549240:intron | 40.0% |
| ! | TGCTTATATTTAGGACCGGA+GGG | - | chr4_1:44258887-44258906 | Msa0549240:intron | 40.0% |
| !! | ACCATTATTGAGGTTGGTCT+CGG | + | chr4_1:44259091-44259110 | None:intergenic | 40.0% |
| ! | GCAAACTTTTGTTGCTGTCA+AGG | + | chr4_1:44259300-44259319 | None:intergenic | 40.0% |
| TTGCAAGACAGCCTAAATGT+TGG | - | chr4_1:44259334-44259353 | Msa0549240:intron | 40.0% | |
| !! | CACTTCTGAAGCCAACATTT+AGG | + | chr4_1:44259348-44259367 | None:intergenic | 40.0% |
| ! | TACTTCCGGAAAAGTACAAG+AGG | - | chr4_1:44259420-44259439 | Msa0549240:intron | 40.0% |
| TTACAGCAAGACGTTACCAT+AGG | - | chr4_1:44259528-44259547 | Msa0549240:intron | 40.0% | |
| CGTAAAAGATCATCTGTTGC+TGG | - | chr4_1:44259689-44259708 | Msa0549240:CDS | 40.0% | |
| ATGACCGTGATAAAAGCTCA+AGG | - | chr4_1:44259720-44259739 | Msa0549240:intron | 40.0% | |
| !! | GAATGAGAGAACTTTTTGGG+TGG | + | chr4_1:44260001-44260020 | None:intergenic | 40.0% |
| CTGCTGGATGATTATGAACT+TGG | - | chr4_1:44260140-44260159 | Msa0549240:CDS | 40.0% | |
| TAGTTGAGAATACCTACCTC+CGG | + | chr4_1:44260221-44260240 | None:intergenic | 40.0% | |
| TTTCCCTATGCAGAAAAAGG+AGG | - | chr4_1:44260316-44260335 | Msa0549240:intron | 40.0% | |
| ! | TTGCCTCCTTTTTCTGCATA+GGG | + | chr4_1:44260322-44260341 | None:intergenic | 40.0% |
| ! | TTTGCCTCCTTTTTCTGCAT+AGG | + | chr4_1:44260323-44260342 | None:intergenic | 40.0% |
| CAAAATCTTCCACCAATCGA+AGG | - | chr4_1:44260339-44260358 | Msa0549240:intron | 40.0% | |
| AATTCACTGCACATCTTACG+TGG | - | chr4_1:44260618-44260637 | Msa0549240:intron | 40.0% | |
| AATATTTAGCTGCAGTGGTG+GGG | - | chr4_1:44260699-44260718 | Msa0549240:intron | 40.0% | |
| ! | GTGACTTGTCCCTAAAAGAA+TGG | + | chr4_1:44260855-44260874 | None:intergenic | 40.0% |
| !! | TTTTAGGGACAAGTCACCTA+GGG | - | chr4_1:44260858-44260877 | Msa0549240:intron | 40.0% |
| ACAAGTCACCTAGGGTAAAA+TGG | - | chr4_1:44260866-44260885 | Msa0549240:intron | 40.0% | |
| ! | TGTTTCGACCATTTTACCCT+AGG | + | chr4_1:44260877-44260896 | None:intergenic | 40.0% |
| TTACTTGTCTGTGCTCTTCA+TGG | - | chr4_1:44261221-44261240 | Msa0549240:intron | 40.0% | |
| ! | AAAATGGATTCTCAAGGGAG+CGG | + | chr4_1:44261731-44261750 | None:intergenic | 40.0% |
| CTCTTGTAATCTGAATGTGC+AGG | - | chr4_1:44261935-44261954 | Msa0549240:intron | 40.0% | |
| TAATCTGAATGTGCAGGAAG+AGG | - | chr4_1:44261941-44261960 | Msa0549240:intron | 40.0% | |
| !! | CAGTGCTGATGTTAAAGATC+AGG | - | chr4_1:44261983-44262002 | Msa0549240:intron | 40.0% |
| TGCTGATGTTAAAGATCAGG+AGG | - | chr4_1:44261986-44262005 | Msa0549240:intron | 40.0% | |
| TCACTATCATCAGATTGCTC+TGG | + | chr4_1:44262032-44262051 | None:intergenic | 40.0% | |
| GTAATACTTTCTCGAAGTCC+AGG | - | chr4_1:44262190-44262209 | Msa0549240:five_prime_UTR | 40.0% | |
| AGAGCAAAGGGTGAGAAACA+AGG | + | chr4_1:44257598-44257617 | None:intergenic | 45.0% | |
| AGAGGGAGGAAAAGAGCAAA+GGG | + | chr4_1:44257610-44257629 | None:intergenic | 45.0% | |
| AAATGAGAGTGAAGAGAGGG+AGG | + | chr4_1:44257624-44257643 | None:intergenic | 45.0% | |
| TATCTCCCTGTAGCACTTCT+TGG | - | chr4_1:44258060-44258079 | Msa0549240:intron | 45.0% | |
| !! | CTATGCCAAGAAGTGCTACA+GGG | + | chr4_1:44258068-44258087 | None:intergenic | 45.0% |
| !! | ACTATGCCAAGAAGTGCTAC+AGG | + | chr4_1:44258069-44258088 | None:intergenic | 45.0% |
| ACTCGCTTGCGACTTAAGAA+GGG | + | chr4_1:44258192-44258211 | None:intergenic | 45.0% | |
| TACTCGCTTGCGACTTAAGA+AGG | + | chr4_1:44258193-44258212 | None:intergenic | 45.0% | |
| CAAGGATGTAAAGGCCTAGT+CGG | - | chr4_1:44258249-44258268 | Msa0549240:intron | 45.0% | |
| !! | TTATCACCGCTTTTCTGTCC+TGG | - | chr4_1:44258375-44258394 | Msa0549240:intron | 45.0% |
| CGAAAACCAGGACAGAAAAG+CGG | + | chr4_1:44258384-44258403 | None:intergenic | 45.0% | |
| TTATTGCTTACGGTATGGCG+AGG | - | chr4_1:44258536-44258555 | Msa0549240:intron | 45.0% | |
| AAAAGATCCATGAGGCAGGT+TGG | + | chr4_1:44258633-44258652 | None:intergenic | 45.0% | |
| TGCTGCACGTGGTTAGTAAT+GGG | - | chr4_1:44258677-44258696 | Msa0549240:CDS | 45.0% | |
| ATGCTACCTCGTCTGTAGAT+GGG | - | chr4_1:44259019-44259038 | Msa0549240:CDS | 45.0% | |
| ! | AATGGATTTAGTGACGGTGG+GGG | + | chr4_1:44259067-44259086 | None:intergenic | 45.0% |
| ! | GAATGGATTTAGTGACGGTG+GGG | + | chr4_1:44259068-44259087 | None:intergenic | 45.0% |
| ! | GGAATGGATTTAGTGACGGT+GGG | + | chr4_1:44259069-44259088 | None:intergenic | 45.0% |
| ! | CTCGGGAATGGATTTAGTGA+CGG | + | chr4_1:44259073-44259092 | None:intergenic | 45.0% |
| !! | CCATTATTGAGGTTGGTCTC+GGG | + | chr4_1:44259090-44259109 | None:intergenic | 45.0% |
| TGTCAAGGAATGCAGTGGAT+GGG | + | chr4_1:44259285-44259304 | None:intergenic | 45.0% | |
| AAGATCATCTGTTGCTGGTG+TGG | - | chr4_1:44259694-44259713 | Msa0549240:intron | 45.0% | |
| ! | GCTGCCTTGAGCTTTTATCA+CGG | + | chr4_1:44259727-44259746 | None:intergenic | 45.0% |
| ! | AAATGATGACGAGGACGAAG+TGG | - | chr4_1:44259856-44259875 | Msa0549240:CDS | 45.0% |
| TCTCGGCGAAGAAAAAGACA+AGG | - | chr4_1:44260022-44260041 | Msa0549240:CDS | 45.0% | |
| TGCAGAAAATAAGGAGCGAC+CGG | - | chr4_1:44260199-44260218 | Msa0549240:intron | 45.0% | |
| ! | TGTTGCTTACCTTCGATTGG+TGG | + | chr4_1:44260351-44260370 | None:intergenic | 45.0% |
| !! | CTGTGTTGCTTACCTTCGAT+TGG | + | chr4_1:44260354-44260373 | None:intergenic | 45.0% |
| GGGGATTTCTTTCATGATGC+TGG | - | chr4_1:44260718-44260737 | Msa0549240:intron | 45.0% | |
| ! | TGCTGGTGCTAATAGTGAAG+AGG | - | chr4_1:44260735-44260754 | Msa0549240:CDS | 45.0% |
| !! | CTTTTAGGGACAAGTCACCT+AGG | - | chr4_1:44260857-44260876 | Msa0549240:intron | 45.0% |
| !! | ACATAGGCTCTGAAGGAGTT+TGG | - | chr4_1:44261056-44261075 | Msa0549240:intron | 45.0% |
| ! | GGCTTCCTGATTTGCATTAG+TGG | + | chr4_1:44261393-44261412 | None:intergenic | 45.0% |
| GTCTTCAGTAGTGTCTTCAG+TGG | + | chr4_1:44261414-44261433 | None:intergenic | 45.0% | |
| ACTACTGAAGACATGTCACC+TGG | - | chr4_1:44261422-44261441 | Msa0549240:intron | 45.0% | |
| ! | AAATGGATTCTCAAGGGAGC+GGG | + | chr4_1:44261730-44261749 | None:intergenic | 45.0% |
| TAAAGATCAGGAGGATCCCA+TGG | - | chr4_1:44261995-44262014 | Msa0549240:intron | 45.0% | |
| TCTGGACTATGATACGCCAT+GGG | + | chr4_1:44262014-44262033 | None:intergenic | 45.0% | |
| GAGAGGGAGGAAAAGAGCAA+AGG | + | chr4_1:44257611-44257630 | None:intergenic | 50.0% | |
| GGCTGCGAAATTCAGAAGAG+AGG | + | chr4_1:44257697-44257716 | None:intergenic | 50.0% | |
| GACCTCAAACCCCAACTTTC+CGG | - | chr4_1:44257731-44257750 | Msa0549240:exon | 50.0% | |
| AGCGAATCCACCGGAAAGTT+GGG | + | chr4_1:44257744-44257763 | None:intergenic | 50.0% | |
| TGATTGGACAGCGAATCCAC+CGG | + | chr4_1:44257753-44257772 | None:intergenic | 50.0% | |
| TAGACAGGAGAAGACCGACT+AGG | + | chr4_1:44258266-44258285 | None:intergenic | 50.0% | |
| CATTACTAACCACGTGCAGC+AGG | + | chr4_1:44258678-44258697 | None:intergenic | 50.0% | |
| CTGCTGCACGTGGTTAGTAA+TGG | - | chr4_1:44258676-44258695 | Msa0549240:CDS | 50.0% | |
| TTTGACCTTCGGCGCAAACT+TGG | + | chr4_1:44258959-44258978 | None:intergenic | 50.0% | |
| CATGCTACCTCGTCTGTAGA+TGG | - | chr4_1:44259018-44259037 | Msa0549240:CDS | 50.0% | |
| GTTCTTCCCATCTACAGACG+AGG | + | chr4_1:44259028-44259047 | None:intergenic | 50.0% | |
| ! | GGGAATGGATTTAGTGACGG+TGG | + | chr4_1:44259070-44259089 | None:intergenic | 50.0% |
| !! | ATTGAGGTTGGTCTCGGGAA+TGG | + | chr4_1:44259085-44259104 | None:intergenic | 50.0% |
| CCCGAGACCAACCTCAATAA+TGG | - | chr4_1:44259087-44259106 | Msa0549240:CDS | 50.0% | |
| GTCAAGGAATGCAGTGGATG+GGG | + | chr4_1:44259284-44259303 | None:intergenic | 50.0% | |
| CTGTCAAGGAATGCAGTGGA+TGG | + | chr4_1:44259286-44259305 | None:intergenic | 50.0% | |
| GTTGCTGTCAAGGAATGCAG+TGG | + | chr4_1:44259290-44259309 | None:intergenic | 50.0% | |
| !! | GTTGGCTTCAGAAGTGCTTC+AGG | - | chr4_1:44259352-44259371 | Msa0549240:intron | 50.0% |
| ATCATCTGTTGCTGGTGTGG+AGG | - | chr4_1:44259697-44259716 | Msa0549240:intron | 50.0% | |
| TTTCATTCCCACAGTGGACC+AGG | - | chr4_1:44260115-44260134 | Msa0549240:CDS | 50.0% | |
| CATAATCATCCAGCAGAGCC+TGG | + | chr4_1:44260136-44260155 | None:intergenic | 50.0% | |
| AGAAAATAAGGAGCGACCGG+AGG | - | chr4_1:44260202-44260221 | Msa0549240:intron | 50.0% | |
| ! | AATGGATTCTCAAGGGAGCG+GGG | + | chr4_1:44261729-44261748 | None:intergenic | 50.0% |
| GGAAGAGGTTGCAACAACTG+AGG | - | chr4_1:44261956-44261975 | Msa0549240:intron | 50.0% | |
| AGAGGTTGCAACAACTGAGG+AGG | - | chr4_1:44261959-44261978 | Msa0549240:intron | 50.0% | |
| CTCTGGACTATGATACGCCA+TGG | + | chr4_1:44262015-44262034 | None:intergenic | 50.0% | |
| !! | TGAGGTCGCGATTTCGGGTT+CGG | + | chr4_1:44257718-44257737 | None:intergenic | 55.0% |
| ! | GGGTTTGAGGTCGCGATTTC+GGG | + | chr4_1:44257723-44257742 | None:intergenic | 55.0% |
| ! | GGGGTTTGAGGTCGCGATTT+CGG | + | chr4_1:44257724-44257743 | None:intergenic | 55.0% |
| CACCGGAAAGTTGGGGTTTG+AGG | + | chr4_1:44257736-44257755 | None:intergenic | 55.0% | |
| CTCAAACCCCAACTTTCCGG+TGG | - | chr4_1:44257734-44257753 | Msa0549240:exon | 55.0% | |
| GCGAATCCACCGGAAAGTTG+GGG | + | chr4_1:44257743-44257762 | None:intergenic | 55.0% | |
| CAGCGAATCCACCGGAAAGT+TGG | + | chr4_1:44257745-44257764 | None:intergenic | 55.0% | |
| CATAGAAGACATAGCCGGCG+TGG | + | chr4_1:44258351-44258370 | None:intergenic | 55.0% | |
| !! | GATCCATGAGGCAGGTTGGT+TGG | + | chr4_1:44258629-44258648 | None:intergenic | 55.0% |
| TTCGGCGCAAACTTGGCACT+AGG | + | chr4_1:44258952-44258971 | None:intergenic | 55.0% | |
| TAGTGCCAAGTTTGCGCCGA+AGG | - | chr4_1:44258951-44258970 | Msa0549240:CDS | 55.0% | |
| AATAAGGAGCGACCGGAGGT+AGG | - | chr4_1:44260206-44260225 | Msa0549240:intron | 55.0% | |
| ATGGATTCTCAAGGGAGCGG+GGG | + | chr4_1:44261728-44261747 | None:intergenic | 55.0% | |
| AGGCCAACCAACCTGCCTCA+TGG | - | chr4_1:44258623-44258642 | Msa0549240:intron | 60.0% | |
| CTTGAAGCTCCTGCTGCACG+TGG | - | chr4_1:44258666-44258685 | Msa0549240:CDS | 60.0% | |
| AGCAGAGCCTGGTCCACTGT+GGG | + | chr4_1:44260125-44260144 | None:intergenic | 60.0% | |
| CAGCAGAGCCTGGTCCACTG+TGG | + | chr4_1:44260126-44260145 | None:intergenic | 65.0% | |
| CACAGTGGACCAGGCTCTGC+TGG | - | chr4_1:44260124-44260143 | Msa0549240:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 44257568 | 44262272 | 44257568 | ID=Msa0549240;Name=Msa0549240 |
| chr4_1 | mRNA | 44257568 | 44262272 | 44257568 | ID=Msa0549240-mRNA-1;Parent=Msa0549240;Name=Msa0549240-mRNA-1;_AED=0.11;_eAED=0.11;_QI=245|0.9|0.90|1|0.9|0.90|11|178|483 |
| chr4_1 | exon | 44257568 | 44257883 | 44257568 | ID=Msa0549240-mRNA-1:exon:11437;Parent=Msa0549240-mRNA-1 |
| chr4_1 | exon | 44258389 | 44258498 | 44258389 | ID=Msa0549240-mRNA-1:exon:11436;Parent=Msa0549240-mRNA-1 |
| chr4_1 | exon | 44258634 | 44258778 | 44258634 | ID=Msa0549240-mRNA-1:exon:11435;Parent=Msa0549240-mRNA-1 |
| chr4_1 | exon | 44258922 | 44259132 | 44258922 | ID=Msa0549240-mRNA-1:exon:11434;Parent=Msa0549240-mRNA-1 |
| chr4_1 | exon | 44259480 | 44259511 | 44259480 | ID=Msa0549240-mRNA-1:exon:11433;Parent=Msa0549240-mRNA-1 |
| chr4_1 | exon | 44259617 | 44259711 | 44259617 | ID=Msa0549240-mRNA-1:exon:11432;Parent=Msa0549240-mRNA-1 |
| chr4_1 | exon | 44259797 | 44260184 | 44259797 | ID=Msa0549240-mRNA-1:exon:11431;Parent=Msa0549240-mRNA-1 |
| chr4_1 | exon | 44260399 | 44260592 | 44260399 | ID=Msa0549240-mRNA-1:exon:11430;Parent=Msa0549240-mRNA-1 |
| chr4_1 | exon | 44260732 | 44260824 | 44260732 | ID=Msa0549240-mRNA-1:exon:11429;Parent=Msa0549240-mRNA-1 |
| chr4_1 | exon | 44261153 | 44261215 | 44261153 | ID=Msa0549240-mRNA-1:exon:11428;Parent=Msa0549240-mRNA-1 |
| chr4_1 | exon | 44262045 | 44262272 | 44262045 | ID=Msa0549240-mRNA-1:exon:11427;Parent=Msa0549240-mRNA-1 |
| chr4_1 | five_prime_UTR | 44262045 | 44262272 | 44262045 | ID=Msa0549240-mRNA-1:five_prime_utr;Parent=Msa0549240-mRNA-1 |
| chr4_1 | five_prime_UTR | 44261199 | 44261215 | 44261199 | ID=Msa0549240-mRNA-1:five_prime_utr;Parent=Msa0549240-mRNA-1 |
| chr4_1 | CDS | 44261153 | 44261198 | 44261153 | ID=Msa0549240-mRNA-1:cds;Parent=Msa0549240-mRNA-1 |
| chr4_1 | CDS | 44260732 | 44260824 | 44260732 | ID=Msa0549240-mRNA-1:cds;Parent=Msa0549240-mRNA-1 |
| chr4_1 | CDS | 44260399 | 44260592 | 44260399 | ID=Msa0549240-mRNA-1:cds;Parent=Msa0549240-mRNA-1 |
| chr4_1 | CDS | 44259797 | 44260184 | 44259797 | ID=Msa0549240-mRNA-1:cds;Parent=Msa0549240-mRNA-1 |
| chr4_1 | CDS | 44259617 | 44259711 | 44259617 | ID=Msa0549240-mRNA-1:cds;Parent=Msa0549240-mRNA-1 |
| chr4_1 | CDS | 44259480 | 44259511 | 44259480 | ID=Msa0549240-mRNA-1:cds;Parent=Msa0549240-mRNA-1 |
| chr4_1 | CDS | 44258922 | 44259132 | 44258922 | ID=Msa0549240-mRNA-1:cds;Parent=Msa0549240-mRNA-1 |
| chr4_1 | CDS | 44258634 | 44258778 | 44258634 | ID=Msa0549240-mRNA-1:cds;Parent=Msa0549240-mRNA-1 |
| chr4_1 | CDS | 44258389 | 44258498 | 44258389 | ID=Msa0549240-mRNA-1:cds;Parent=Msa0549240-mRNA-1 |
| chr4_1 | CDS | 44257746 | 44257883 | 44257746 | ID=Msa0549240-mRNA-1:cds;Parent=Msa0549240-mRNA-1 |
| chr4_1 | three_prime_UTR | 44257568 | 44257745 | 44257568 | ID=Msa0549240-mRNA-1:three_prime_utr;Parent=Msa0549240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
