Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604590 | XP_024637513.1 | 86.417 | 508 | 41 | 4 | 1 | 483 | 1 | 505 | 0.0 | 818 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604590 | sp|O94481|TFC5_SCHPO | 50.909 | 55 | 27 | 0 | 342 | 396 | 380 | 434 | 9.76e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0604590 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604590 | Msa0685340 | 0.827805 | 1.277482e-54 | -8.615850e-47 |
| Msa0549240 | Msa0604590 | 0.926701 | 3.265257e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604590 | MtrunA17_Chr4g0033581 | 86.417 | 508 | 41 | 4 | 1 | 483 | 1 | 505 | 0.0 | 818 |
| Msa0604590 | MtrunA17_Chr8g0383101 | 55.164 | 397 | 148 | 10 | 113 | 483 | 371 | 763 | 5.01e-92 | 296 |
| Msa0604590 | MtrunA17_Chr8g0383111 | 59.259 | 108 | 42 | 2 | 109 | 215 | 53 | 159 | 8.65e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604590 | AT4G39160.1 | 38.372 | 258 | 137 | 7 | 167 | 415 | 277 | 521 | 4.49e-38 | 147 |
| Msa0604590 | AT4G39160.3 | 38.372 | 258 | 137 | 7 | 167 | 415 | 277 | 521 | 4.49e-38 | 147 |
| Msa0604590 | AT4G39160.2 | 38.372 | 258 | 137 | 7 | 167 | 415 | 277 | 521 | 6.15e-38 | 147 |
Find 109 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTCAATCAATTTCTCTT+AGG | 0.163126 | 4_2:+50235415 | Msa0604590:CDS |
| GGGTTTGAGGTCGCGATTTC+GGG | 0.182182 | 4_2:-50232973 | None:intergenic |
| GTTACAAATTTATGATATAT+TGG | 0.264065 | 4_2:-50237508 | None:intergenic |
| GACCTCAAACCCCAACTTTC+CGG | 0.269030 | 4_2:+50232984 | Msa0604590:five_prime_UTR |
| TCTTGCAATTGCAGAAAATA+AGG | 0.274714 | 4_2:+50235443 | Msa0604590:CDS |
| TCTATATTGTTACAAATATA+AGG | 0.289417 | 4_2:-50235074 | None:intergenic |
| GGGGTTTGAGGTCGCGATTT+CGG | 0.330188 | 4_2:-50232974 | None:intergenic |
| TTTGATTTGTCTTGAATGAT+TGG | 0.332251 | 4_2:-50233019 | None:intergenic |
| CACAGTGGACCAGGCTCTGC+TGG | 0.334784 | 4_2:+50235377 | Msa0604590:intron |
| GTTGAATCATTGTAAAATCT+AGG | 0.346657 | 4_2:-50236332 | None:intergenic |
| AGCGAATCCACCGGAAAGTT+GGG | 0.356355 | 4_2:-50232994 | None:intergenic |
| ACAAGTCACCTAGGGTAAAA+TGG | 0.357410 | 4_2:+50236119 | Msa0604590:CDS |
| TGAGGTCGCGATTTCGGGTT+CGG | 0.362855 | 4_2:-50232968 | None:intergenic |
| CATGCTACCTCGTCTGTAGA+TGG | 0.366233 | 4_2:+50234271 | Msa0604590:CDS |
| CTGCTGGATGATTATGAACT+TGG | 0.367304 | 4_2:+50235393 | Msa0604590:CDS |
| GGCTTCCTGATTTGCATTAG+TGG | 0.370648 | 4_2:-50236643 | None:intergenic |
| CCCGAGACCAACCTCAATAA+TGG | 0.372518 | 4_2:+50234340 | Msa0604590:CDS |
| ACCATTATTGAGGTTGGTCT+CGG | 0.372588 | 4_2:-50234341 | None:intergenic |
| CACTTCTGAAGCCAACATTT+AGG | 0.375419 | 4_2:-50234598 | None:intergenic |
| TTCTACCACTAATGCAAATC+AGG | 0.389275 | 4_2:+50236638 | Msa0604590:CDS |
| TTCTCAATCAATTTCTCTTA+GGG | 0.392485 | 4_2:+50235416 | Msa0604590:CDS |
| TACTAGCTTGATCATACTCT+TGG | 0.398834 | 4_2:-50236045 | None:intergenic |
| CACCGGAAAGTTGGGGTTTG+AGG | 0.401753 | 4_2:-50232986 | None:intergenic |
| GTTGGCTTCAGAAGTGCTTC+AGG | 0.403637 | 4_2:+50234605 | Msa0604590:CDS |
| GGGGATTTCTTTCATGATGC+TGG | 0.405910 | 4_2:+50235971 | Msa0604590:CDS |
| AAAAGTTCTCTCATTCTTCT+CGG | 0.409991 | 4_2:+50235258 | Msa0604590:CDS |
| CAGCGAATCCACCGGAAAGT+TGG | 0.412347 | 4_2:-50232995 | None:intergenic |
| ACATAGGCTCTGAAGGAGTT+TGG | 0.412678 | 4_2:+50236309 | Msa0604590:intron |
| GCTATTAATAGTCGTTCATC+AGG | 0.426472 | 4_2:+50236438 | Msa0604590:CDS |
| CGTAAAAGATCATCTGTTGC+TGG | 0.432583 | 4_2:+50234942 | Msa0604590:CDS |
| GTGACTTGTCCCTAAAAGAA+TGG | 0.456507 | 4_2:-50236105 | None:intergenic |
| AACATAACTTACCATTATTG+AGG | 0.456653 | 4_2:-50234351 | None:intergenic |
| AAACTCAAACTCATTAATTG+AGG | 0.471340 | 4_2:+50235031 | Msa0604590:CDS |
| ATTGAGGTTGGTCTCGGGAA+TGG | 0.473304 | 4_2:-50234335 | None:intergenic |
| AGAGTGCATACATTAATTCC+AGG | 0.475172 | 4_2:-50236693 | None:intergenic |
| TTTCATTCCCACAGTGGACC+AGG | 0.476047 | 4_2:+50235368 | Msa0604590:intron |
| CTGTGTTGCTTACCTTCGAT+TGG | 0.477352 | 4_2:-50235604 | None:intergenic |
| CAGTGCTGATGTTAAAGATC+AGG | 0.478050 | 4_2:+50237236 | Msa0604590:CDS |
| AATGGAATGAATGTTGTTCT+CGG | 0.482678 | 4_2:-50234648 | None:intergenic |
| TGACTTGTCCCTAAAAGAAT+GGG | 0.487889 | 4_2:-50236104 | None:intergenic |
| TAACTTACCATTATTGAGGT+TGG | 0.489810 | 4_2:-50234347 | None:intergenic |
| TCAAGACAAATCAAAAGAAA+AGG | 0.491272 | 4_2:+50233027 | Msa0604590:five_prime_UTR |
| CCATTATTGAGGTTGGTCTC+GGG | 0.494784 | 4_2:-50234340 | None:intergenic |
| CATTACTAACCACGTGCAGC+AGG | 0.498380 | 4_2:-50233928 | None:intergenic |
| GCATTAGTGGTAGAAATTTG+TGG | 0.499145 | 4_2:-50236630 | None:intergenic |
| TGTTGCTTACCTTCGATTGG+TGG | 0.499150 | 4_2:-50235601 | None:intergenic |
| CAGATAAGAGAGGGAAATTG+TGG | 0.501825 | 4_2:-50232895 | None:intergenic |
| AGAGCGAGGAAAAGAGCAAA+GGG | 0.502451 | 4_2:-50232857 | None:intergenic |
| TCACTATCATCAGATTGCTC+TGG | 0.502518 | 4_2:-50237282 | None:intergenic |
| TGCAGAAAATAAGGAGCGAC+CGG | 0.506681 | 4_2:+50235452 | Msa0604590:CDS |
| TCATTAATTGAGGATGATGA+TGG | 0.509072 | 4_2:+50235041 | Msa0604590:CDS |
| GATCCATGAGGCAGGTTGGT+TGG | 0.509436 | 4_2:-50233879 | None:intergenic |
| GTGATGATGACTTACAGAAA+TGG | 0.510346 | 4_2:+50237301 | Msa0604590:CDS |
| ATAGCATCAGTTATTCGTAA+AGG | 0.518506 | 4_2:-50236420 | None:intergenic |
| AAATATTTAGCTGCAGTGGT+GGG | 0.523222 | 4_2:+50235951 | Msa0604590:intron |
| AAATTCAGAAGAGAGGAAGC+AGG | 0.524487 | 4_2:-50232940 | None:intergenic |
| CATATGAAACATCATATACC+TGG | 0.526211 | 4_2:-50237461 | None:intergenic |
| AGGCCAACCAACCTGCCTCA+TGG | 0.528196 | 4_2:+50233876 | Msa0604590:intron |
| TTTAAAATATTTAGCTGCAG+TGG | 0.528589 | 4_2:+50235947 | Msa0604590:intron |
| CATAATCATCCAGCAGAGCC+TGG | 0.529086 | 4_2:-50235386 | None:intergenic |
| GTAATACTTTCTCGAAGTCC+AGG | 0.532042 | 4_2:+50237443 | Msa0604590:three_prime_UTR |
| AAATGAGAGTGAAGAGAGCG+AGG | 0.534490 | 4_2:-50232871 | None:intergenic |
| GGAATGGATTTAGTGACGGT+GGG | 0.535901 | 4_2:-50234319 | None:intergenic |
| AAAATATTTAGCTGCAGTGG+TGG | 0.541517 | 4_2:+50235950 | Msa0604590:intron |
| AATGGATTTAGTGACGGTGG+GGG | 0.543456 | 4_2:-50234317 | None:intergenic |
| CTGTCAAGGAATGCAGTGGA+TGG | 0.545069 | 4_2:-50234536 | None:intergenic |
| CTCTGGACTATGATACGCCA+TGG | 0.555687 | 4_2:-50237265 | None:intergenic |
| AAGATCATCTGTTGCTGGTG+TGG | 0.557955 | 4_2:+50234947 | Msa0604590:CDS |
| ATGCTACCTCGTCTGTAGAT+GGG | 0.560684 | 4_2:+50234272 | Msa0604590:CDS |
| AATATTTAGCTGCAGTGGTG+GGG | 0.567750 | 4_2:+50235952 | Msa0604590:intron |
| GAGAGCGAGGAAAAGAGCAA+AGG | 0.574327 | 4_2:-50232858 | None:intergenic |
| GTCAAGGAATGCAGTGGATG+GGG | 0.578734 | 4_2:-50234534 | None:intergenic |
| TTGCAAGACAGCCTAAATGT+TGG | 0.580193 | 4_2:+50234587 | Msa0604590:CDS |
| TCTATAATTCAGATAAGAGA+GGG | 0.581623 | 4_2:-50232904 | None:intergenic |
| AAAAGATCCATGAGGCAGGT+TGG | 0.585641 | 4_2:-50233883 | None:intergenic |
| TTTATTAGGATGCTAATGAG+AGG | 0.585716 | 4_2:+50234901 | Msa0604590:intron |
| GAATGGATTTAGTGACGGTG+GGG | 0.591826 | 4_2:-50234318 | None:intergenic |
| ACTACTGAAGACATGTCACC+TGG | 0.592887 | 4_2:+50236675 | Msa0604590:CDS |
| CTCGGGAATGGATTTAGTGA+CGG | 0.594357 | 4_2:-50234323 | None:intergenic |
| GCGAATCCACCGGAAAGTTG+GGG | 0.594414 | 4_2:-50232993 | None:intergenic |
| AAATGATGACGAGGACGAAG+TGG | 0.594931 | 4_2:+50235109 | Msa0604590:CDS |
| GTCTTCAGTAGTGTCTTCAG+TGG | 0.600402 | 4_2:-50236664 | None:intergenic |
| CTCAAACCCCAACTTTCCGG+TGG | 0.601709 | 4_2:+50232987 | Msa0604590:five_prime_UTR |
| TGCTGATGTTAAAGATCAGG+AGG | 0.606209 | 4_2:+50237239 | Msa0604590:CDS |
| TTCTATAATTCAGATAAGAG+AGG | 0.608069 | 4_2:-50232905 | None:intergenic |
| CAAAATCTTCCACCAATCGA+AGG | 0.613148 | 4_2:+50235592 | Msa0604590:CDS |
| GGGAATGGATTTAGTGACGG+TGG | 0.613872 | 4_2:-50234320 | None:intergenic |
| CTTGAAGCTCCTGCTGCACG+TGG | 0.616756 | 4_2:+50233919 | Msa0604590:CDS |
| TGTCAAGGAATGCAGTGGAT+GGG | 0.621373 | 4_2:-50234535 | None:intergenic |
| AATTCAGAAGAGAGGAAGCA+GGG | 0.622815 | 4_2:-50232939 | None:intergenic |
| AGAGCAAAGGGTGAGAAACA+AGG | 0.631128 | 4_2:-50232845 | None:intergenic |
| ATCATCTGTTGCTGGTGTGG+AGG | 0.632127 | 4_2:+50234950 | Msa0604590:CDS |
| ATATTGTTACAAATATAAGG+AGG | 0.636102 | 4_2:-50235071 | None:intergenic |
| GGCTGCGAAATTCAGAAGAG+AGG | 0.638717 | 4_2:-50232947 | None:intergenic |
| TAAAGATCAGGAGGATCCCA+TGG | 0.641855 | 4_2:+50237248 | Msa0604590:CDS |
| AGAAAATAAGGAGCGACCGG+AGG | 0.647366 | 4_2:+50235455 | Msa0604590:CDS |
| AGAATGGGAATTGTATAAAG+CGG | 0.648772 | 4_2:-50236089 | None:intergenic |
| GTTGCTGTCAAGGAATGCAG+TGG | 0.651362 | 4_2:-50234540 | None:intergenic |
| TATTGTTACAAATATAAGGA+GGG | 0.653546 | 4_2:-50235070 | None:intergenic |
| TACTTCCGGAAAAGTACAAG+AGG | 0.653833 | 4_2:+50234673 | Msa0604590:CDS |
| TCTGGACTATGATACGCCAT+GGG | 0.656583 | 4_2:-50237264 | None:intergenic |
| TGATTGGACAGCGAATCCAC+CGG | 0.662198 | 4_2:-50233003 | None:intergenic |
| AGAGGTTGCAACAACTGAGG+AGG | 0.662600 | 4_2:+50237212 | Msa0604590:CDS |
| ATGACCGTGATAAAAGCTCA+AGG | 0.662857 | 4_2:+50234973 | Msa0604590:CDS |
| TTATTCGTAAAGGATGATGT+CGG | 0.671321 | 4_2:-50236410 | None:intergenic |
| GGAAGAGGTTGCAACAACTG+AGG | 0.674245 | 4_2:+50237209 | Msa0604590:intron |
| TGCTGGTGCTAATAGTGAAG+AGG | 0.679934 | 4_2:+50235988 | Msa0604590:CDS |
| ACTTGAAGAAAATGATGACG+AGG | 0.685696 | 4_2:+50235100 | Msa0604590:CDS |
| GTTCTTCCCATCTACAGACG+AGG | 0.708904 | 4_2:-50234278 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATTAAATTAATTAAGA+TGG | - | chr4_2:50233855-50233874 | None:intergenic | 10.0% |
| !!! | TTATTTTTTATTTATACGTA+CGG | + | chr4_2:50233967-50233986 | Msa0604590:intron | 10.0% |
| !!! | TTTCATTTGTAATTTTTATT+AGG | + | chr4_2:50234887-50234906 | Msa0604590:intron | 10.0% |
| !! | TTAAAAAAATATAATTGACA+AGG | - | chr4_2:50235780-50235799 | None:intergenic | 10.0% |
| !!! | GTTTTTTATTTTTCAAAACT+TGG | + | chr4_2:50233105-50233124 | Msa0604590:intron | 15.0% |
| !!! | CTTAATTAATTTAATTTCTC+AGG | + | chr4_2:50233856-50233875 | Msa0604590:intron | 15.0% |
| !!! | AGTTAAATTTGCTTATATTT+AGG | - | chr4_2:50234034-50234053 | None:intergenic | 15.0% |
| !!! | ATAAGCAAATTTAACTTTTT+AGG | + | chr4_2:50234038-50234057 | Msa0604590:intron | 15.0% |
| !! | TCTATATTGTTACAAATATA+AGG | - | chr4_2:50235077-50235096 | None:intergenic | 15.0% |
| !! | AATATAAATCTATTTACTAC+TGG | - | chr4_2:50235922-50235941 | None:intergenic | 15.0% |
| !!! | CTATGTTTTAAAAAAATGAA+TGG | - | chr4_2:50236295-50236314 | None:intergenic | 15.0% |
| !!! | CATTCATTTTTTTAAAACAT+AGG | + | chr4_2:50236293-50236312 | Msa0604590:intron | 15.0% |
| !!! | TTGTTTTGTTTTATATTTTG+AGG | + | chr4_2:50236720-50236739 | Msa0604590:intron | 15.0% |
| !! | ATATTAAGGTTTAAATTACA+TGG | - | chr4_2:50236920-50236939 | None:intergenic | 15.0% |
| !! | TAAGAAATATTACAATTATG+TGG | - | chr4_2:50237138-50237157 | None:intergenic | 15.0% |
| !! | ATTGTGATCAAATAAGTTTA+GGG | - | chr4_2:50233068-50233087 | None:intergenic | 20.0% |
| !!! | TTTATTTTTCAAAACTTGGT+TGG | + | chr4_2:50233109-50233128 | Msa0604590:intron | 20.0% |
| !! | TGTTTATCATGTTTACTTAA+TGG | + | chr4_2:50233743-50233762 | Msa0604590:intron | 20.0% |
| !!! | AGTCAAATTTGCTTATATTT+AGG | + | chr4_2:50234131-50234150 | Msa0604590:intron | 20.0% |
| !!! | ATTATATTCTTTTTGTAGCT+CGG | + | chr4_2:50234179-50234198 | Msa0604590:intron | 20.0% |
| !! | TATTGTTACAAATATAAGGA+GGG | - | chr4_2:50235073-50235092 | None:intergenic | 20.0% |
| !! | ATATTGTTACAAATATAAGG+AGG | - | chr4_2:50235074-50235093 | None:intergenic | 20.0% |
| !! | AAGTTCAAAAAAGAAATATG+TGG | + | chr4_2:50235163-50235182 | Msa0604590:CDS | 20.0% |
| !!! | ATTACTAATTTTGTCTTTTC+TGG | + | chr4_2:50236228-50236247 | Msa0604590:intron | 20.0% |
| !!! | ATGATTCAACAAATTTTTTC+TGG | + | chr4_2:50236345-50236364 | Msa0604590:CDS | 20.0% |
| !!! | AGATCATCATATTTTTAAGT+CGG | + | chr4_2:50236593-50236612 | Msa0604590:intron | 20.0% |
| ! | TCTATAATTCAGATAAGAGA+GGG | - | chr4_2:50232907-50232926 | None:intergenic | 25.0% |
| ! | TTCTATAATTCAGATAAGAG+AGG | - | chr4_2:50232908-50232927 | None:intergenic | 25.0% |
| !!! | TTTGATTTGTCTTGAATGAT+TGG | - | chr4_2:50233022-50233041 | None:intergenic | 25.0% |
| ! | TCAAGACAAATCAAAAGAAA+AGG | + | chr4_2:50233027-50233046 | Msa0604590:five_prime_UTR | 25.0% |
| ! | GATTGTGATCAAATAAGTTT+AGG | - | chr4_2:50233069-50233088 | None:intergenic | 25.0% |
| ! | CTCATATTATAGTAAGGTAT+TGG | - | chr4_2:50233164-50233183 | None:intergenic | 25.0% |
| ! | ATACCTTACTATAATATGAG+TGG | + | chr4_2:50233164-50233183 | Msa0604590:intron | 25.0% |
| !! | TTTTGCTAATTAAAGTAGAC+AGG | - | chr4_2:50233534-50233553 | None:intergenic | 25.0% |
| ! | AAGTCAGCAATATAATATGT+TGG | - | chr4_2:50233714-50233733 | None:intergenic | 25.0% |
| ! | TATAATTATAATACTCCCTC+CGG | + | chr4_2:50234007-50234026 | Msa0604590:intron | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | - | chr4_2:50234136-50234155 | None:intergenic | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | + | chr4_2:50234063-50234082 | Msa0604590:intron | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | + | chr4_2:50234136-50234155 | Msa0604590:intron | 25.0% |
| ! | AACATAACTTACCATTATTG+AGG | - | chr4_2:50234354-50234373 | None:intergenic | 25.0% |
| ! | CTAGATATGAAATGATTCAA+CGG | - | chr4_2:50234448-50234467 | None:intergenic | 25.0% |
| !!! | ATTCATTCCATTTTTACTTC+CGG | + | chr4_2:50234659-50234678 | Msa0604590:CDS | 25.0% |
| ! | TGTAAAAAATCAGCTAATGT+AGG | - | chr4_2:50234766-50234785 | None:intergenic | 25.0% |
| ! | AAACTCAAACTCATTAATTG+AGG | + | chr4_2:50235031-50235050 | Msa0604590:CDS | 25.0% |
| ! | AAGAAATATGTGGCTAAAAA+TGG | + | chr4_2:50235173-50235192 | Msa0604590:CDS | 25.0% |
| ! | AAAAAAAGCAAGAAGGAAAA+TGG | + | chr4_2:50235206-50235225 | Msa0604590:CDS | 25.0% |
| ! | TTCTCAATCAATTTCTCTTA+GGG | + | chr4_2:50235416-50235435 | Msa0604590:CDS | 25.0% |
| !! | TCTTAGCAATTGTTATTAGT+AGG | + | chr4_2:50235512-50235531 | Msa0604590:intron | 25.0% |
| !! | AATTGTTATTAGTAGGCTTA+TGG | + | chr4_2:50235519-50235538 | Msa0604590:intron | 25.0% |
| ! | ATGATGGTAAATAAGATGTT+TGG | - | chr4_2:50235899-50235918 | None:intergenic | 25.0% |
| !! | TTTAAAATATTTAGCTGCAG+TGG | + | chr4_2:50235947-50235966 | Msa0604590:intron | 25.0% |
| !! | TATACAATTCCCATTCTTTT+AGG | + | chr4_2:50236095-50236114 | Msa0604590:CDS | 25.0% |
| !! | ATACAATTCCCATTCTTTTA+GGG | + | chr4_2:50236096-50236115 | Msa0604590:CDS | 25.0% |
| !! | GAATACCTCATAAAACTTTT+CGG | - | chr4_2:50236158-50236177 | None:intergenic | 25.0% |
| !! | ATTTTGTCTTTTCTGGATTT+AGG | + | chr4_2:50236235-50236254 | Msa0604590:intron | 25.0% |
| ! | GTTGAATCATTGTAAAATCT+AGG | - | chr4_2:50236335-50236354 | None:intergenic | 25.0% |
| ! | TAAAATGTTATTCCACATCA+AGG | - | chr4_2:50236544-50236563 | None:intergenic | 25.0% |
| !!! | TTTTGAGGTCTATATTCATT+TGG | + | chr4_2:50236735-50236754 | Msa0604590:intron | 25.0% |
| ! | GATGTTTGTGAGTTAAAATT+TGG | + | chr4_2:50236825-50236844 | Msa0604590:intron | 25.0% |
| ! | GAAGTAAATTTGAGTAACAA+AGG | - | chr4_2:50236898-50236917 | None:intergenic | 25.0% |
| ! | TATACGTTGCTTCTATATTA+AGG | - | chr4_2:50236934-50236953 | None:intergenic | 25.0% |
| !! | TGTATAAAATGGATTCTCAA+GGG | - | chr4_2:50236989-50237008 | None:intergenic | 25.0% |
| !! | TTGTATAAAATGGATTCTCA+AGG | - | chr4_2:50236990-50237009 | None:intergenic | 25.0% |
| !! | TTGAGAATCCATTTTATACA+AGG | + | chr4_2:50236989-50237008 | Msa0604590:intron | 25.0% |
| !! | TGAGAATCCATTTTATACAA+GGG | + | chr4_2:50236990-50237009 | Msa0604590:intron | 25.0% |
| ! | ATATGACGTAAAAACTTTCA+AGG | + | chr4_2:50237041-50237060 | Msa0604590:intron | 25.0% |
| ! | TTCTGAATCTATAATTGAAG+TGG | - | chr4_2:50237100-50237119 | None:intergenic | 25.0% |
| AAGCCACTCATATTATAGTA+AGG | - | chr4_2:50233170-50233189 | None:intergenic | 30.0% | |
| CTTATGTTTAACTATCTCTC+TGG | + | chr4_2:50233199-50233218 | Msa0604590:intron | 30.0% | |
| GTTGTTTGAAGAAATTGAAG+TGG | + | chr4_2:50233340-50233359 | Msa0604590:intron | 30.0% | |
| TTATACTACTCTAAACAGCA+TGG | - | chr4_2:50233379-50233398 | None:intergenic | 30.0% | |
| GTATAATGATTACTCGTGTT+TGG | + | chr4_2:50233393-50233412 | Msa0604590:intron | 30.0% | |
| TTGCAGATTGAATGAAGTTA+GGG | + | chr4_2:50233479-50233498 | Msa0604590:intron | 30.0% | |
| ATAGAGAGGTGGTTTATTTA+AGG | - | chr4_2:50233561-50233580 | None:intergenic | 30.0% | |
| ! | TTTAAAACAGAGAGATAGAG+AGG | - | chr4_2:50233575-50233594 | None:intergenic | 30.0% |
| !! | TTCTGGGTTTTTAACTATTG+CGG | + | chr4_2:50233661-50233680 | Msa0604590:intron | 30.0% |
| TATCATCAAAAAGATCCATG+AGG | - | chr4_2:50233894-50233913 | None:intergenic | 30.0% | |
| GATGTATGTGGTTCATATTA+TGG | + | chr4_2:50234075-50234094 | Msa0604590:intron | 30.0% | |
| ATATTACATTATACTCCCTC+CGG | - | chr4_2:50234158-50234177 | None:intergenic | 30.0% | |
| TAACTTACCATTATTGAGGT+TGG | - | chr4_2:50234350-50234369 | None:intergenic | 30.0% | |
| ! | GCATTGACAACTATTAAATG+TGG | + | chr4_2:50234467-50234486 | Msa0604590:intron | 30.0% |
| AATGGAATGAATGTTGTTCT+CGG | - | chr4_2:50234651-50234670 | None:intergenic | 30.0% | |
| ! | TACTTTTCCGGAAGTAAAAA+TGG | - | chr4_2:50234669-50234688 | None:intergenic | 30.0% |
| ! | AATGTCTACTTCTTTTCCTA+TGG | - | chr4_2:50234800-50234819 | None:intergenic | 30.0% |
| TTTATTAGGATGCTAATGAG+AGG | + | chr4_2:50234901-50234920 | Msa0604590:intron | 30.0% | |
| ATGAGAGGAAAAAATCTCTA+AGG | + | chr4_2:50234916-50234935 | Msa0604590:CDS | 30.0% | |
| TCATTAATTGAGGATGATGA+TGG | + | chr4_2:50235041-50235060 | Msa0604590:CDS | 30.0% | |
| AGCATACAAAAAAAGCAAGA+AGG | + | chr4_2:50235199-50235218 | Msa0604590:CDS | 30.0% | |
| ! | GAAGAATGAGAGAACTTTTT+GGG | - | chr4_2:50235257-50235276 | None:intergenic | 30.0% |
| ! | AGAAGAATGAGAGAACTTTT+TGG | - | chr4_2:50235258-50235277 | None:intergenic | 30.0% |
| AAAAGTTCTCTCATTCTTCT+CGG | + | chr4_2:50235258-50235277 | Msa0604590:CDS | 30.0% | |
| GTTCTCAATCAATTTCTCTT+AGG | + | chr4_2:50235415-50235434 | Msa0604590:CDS | 30.0% | |
| TCTTGCAATTGCAGAAAATA+AGG | + | chr4_2:50235443-50235462 | Msa0604590:CDS | 30.0% | |
| TTGCTAAGAATTGTAACACA+AGG | - | chr4_2:50235501-50235520 | None:intergenic | 30.0% | |
| GTGTATTATCAAAGCAGTAT+TGG | + | chr4_2:50235634-50235653 | Msa0604590:intron | 30.0% | |
| CACACATATCTTAACTTCTT+AGG | - | chr4_2:50235690-50235709 | None:intergenic | 30.0% | |
| AAATCGTGAAAGCTAACAAA+GGG | - | chr4_2:50235753-50235772 | None:intergenic | 30.0% | |
| TAAATCGTGAAAGCTAACAA+AGG | - | chr4_2:50235754-50235773 | None:intergenic | 30.0% | |
| ATCTATTTACTACTGGATGA+TGG | - | chr4_2:50235915-50235934 | None:intergenic | 30.0% | |
| !!! | ACTTTTAGTTCAGATGATGA+TGG | + | chr4_2:50236013-50236032 | Msa0604590:CDS | 30.0% |
| AGAATGGGAATTGTATAAAG+CGG | - | chr4_2:50236092-50236111 | None:intergenic | 30.0% | |
| !! | AGATACCGAAAAGTTTTATG+AGG | + | chr4_2:50236150-50236169 | Msa0604590:CDS | 30.0% |
| !!! | TTTTAAAACATAGGCTCTGA+AGG | + | chr4_2:50236302-50236321 | Msa0604590:intron | 30.0% |
| TTATTCGTAAAGGATGATGT+CGG | - | chr4_2:50236413-50236432 | None:intergenic | 30.0% | |
| ATAGCATCAGTTATTCGTAA+AGG | - | chr4_2:50236423-50236442 | None:intergenic | 30.0% | |
| TCATATAGTACATGATCAGT+AGG | + | chr4_2:50236497-50236516 | Msa0604590:intron | 30.0% | |
| CATATAGTACATGATCAGTA+GGG | + | chr4_2:50236498-50236517 | Msa0604590:intron | 30.0% | |
| !!! | CCAAGTAAAAGTGCTAATTT+TGG | - | chr4_2:50236869-50236888 | None:intergenic | 30.0% |
| ! | CCAAAATTAGCACTTTTACT+TGG | + | chr4_2:50236866-50236885 | Msa0604590:intron | 30.0% |
| TGTTGTTCCCTTGTATAAAA+TGG | - | chr4_2:50237000-50237019 | None:intergenic | 30.0% | |
| GTCATATCACATATACATGA+TGG | - | chr4_2:50237028-50237047 | None:intergenic | 30.0% | |
| ATATGTGTCTTTATTGTGCT+AGG | - | chr4_2:50237072-50237091 | None:intergenic | 30.0% | |
| AAGAGTCTTGAATATTTGCA+AGG | - | chr4_2:50237173-50237192 | None:intergenic | 30.0% | |
| CATATGAAACATCATATACC+TGG | - | chr4_2:50237464-50237483 | None:intergenic | 30.0% | |
| !! | AACGAGAATGATGGATACAT+TGG | - | chr4_2:50233259-50233278 | None:intergenic | 35.0% |
| AAGCATGTAAACGAGAATGA+TGG | - | chr4_2:50233268-50233287 | None:intergenic | 35.0% | |
| CTTGCAGATTGAATGAAGTT+AGG | + | chr4_2:50233478-50233497 | Msa0604590:intron | 35.0% | |
| !! | GTTTTAAATTCAAACCACGC+CGG | + | chr4_2:50233587-50233606 | Msa0604590:intron | 35.0% |
| AATCACATAGAAGACATAGC+CGG | - | chr4_2:50233609-50233628 | None:intergenic | 35.0% | |
| !! | TCCTGGTTTTCGATTTTTCT+GGG | + | chr4_2:50233645-50233664 | Msa0604590:intron | 35.0% |
| CGGACGCTATTACATTAATA+AGG | + | chr4_2:50233681-50233700 | Msa0604590:intron | 35.0% | |
| CGTAAGCAATAAACTGGAAA+GGG | - | chr4_2:50233781-50233800 | None:intergenic | 35.0% | |
| CCTTTCCAGTTTATTGCTTA+CGG | + | chr4_2:50233779-50233798 | Msa0604590:intron | 35.0% | |
| !!! | GACTGTTTTGATTTGACCTT+CGG | - | chr4_2:50234223-50234242 | None:intergenic | 35.0% |
| ATCAAAACAGTCCTTACGAA+AGG | + | chr4_2:50234231-50234250 | Msa0604590:intron | 35.0% | |
| TGCAGATATTTCCTTTCGTA+AGG | - | chr4_2:50234245-50234264 | None:intergenic | 35.0% | |
| ! | TTCTACCTCTTGTACTTTTC+CGG | - | chr4_2:50234681-50234700 | None:intergenic | 35.0% |
| AATCAGCTAATGTAGGACTA+CGG | - | chr4_2:50234759-50234778 | None:intergenic | 35.0% | |
| ! | ACTTGAAGAAAATGATGACG+AGG | + | chr4_2:50235100-50235119 | Msa0604590:CDS | 35.0% |
| ! | AAGTATTTTCATTCCCACAG+TGG | + | chr4_2:50235362-50235381 | Msa0604590:intron | 35.0% |
| TTTCTGCATAGGGAAACAAA+TGG | - | chr4_2:50235565-50235584 | None:intergenic | 35.0% | |
| TTGTTTCCCTATGCAGAAAA+AGG | + | chr4_2:50235566-50235585 | Msa0604590:intron | 35.0% | |
| TCGTTGTATGTGATTGAGAT+AGG | + | chr4_2:50235715-50235734 | Msa0604590:intron | 35.0% | |
| AAAATATTTAGCTGCAGTGG+TGG | + | chr4_2:50235950-50235969 | Msa0604590:intron | 35.0% | |
| AAATATTTAGCTGCAGTGGT+GGG | + | chr4_2:50235951-50235970 | Msa0604590:intron | 35.0% | |
| ! | TACTAGCTTGATCATACTCT+TGG | - | chr4_2:50236048-50236067 | None:intergenic | 35.0% |
| ! | TGACTTGTCCCTAAAAGAAT+GGG | - | chr4_2:50236107-50236126 | None:intergenic | 35.0% |
| ! | GTCTTTTCTGGATTTAGGAA+TGG | + | chr4_2:50236240-50236259 | Msa0604590:intron | 35.0% |
| GCTATTAATAGTCGTTCATC+AGG | + | chr4_2:50236438-50236457 | Msa0604590:CDS | 35.0% | |
| TCTTTATCTACTCCTTGATG+TGG | + | chr4_2:50236529-50236548 | Msa0604590:intron | 35.0% | |
| GCATTAGTGGTAGAAATTTG+TGG | - | chr4_2:50236633-50236652 | None:intergenic | 35.0% | |
| TTCTACCACTAATGCAAATC+AGG | + | chr4_2:50236638-50236657 | Msa0604590:CDS | 35.0% | |
| AGAGTGCATACATTAATTCC+AGG | - | chr4_2:50236696-50236715 | None:intergenic | 35.0% | |
| ! | GTGATGATGACTTACAGAAA+TGG | + | chr4_2:50237301-50237320 | Msa0604590:CDS | 35.0% |
| CAGATAAGAGAGGGAAATTG+TGG | - | chr4_2:50232898-50232917 | None:intergenic | 40.0% | |
| AATTCAGAAGAGAGGAAGCA+GGG | - | chr4_2:50232942-50232961 | None:intergenic | 40.0% | |
| AAATTCAGAAGAGAGGAAGC+AGG | - | chr4_2:50232943-50232962 | None:intergenic | 40.0% | |
| GATTGAATGAAGTTAGGGCA+AGG | + | chr4_2:50233484-50233503 | Msa0604590:intron | 40.0% | |
| AAGTTAGGGCAAGGATGTAA+AGG | + | chr4_2:50233493-50233512 | Msa0604590:intron | 40.0% | |
| AAAACAGAGAGATAGAGAGG+TGG | - | chr4_2:50233572-50233591 | None:intergenic | 40.0% | |
| !! | GTCCTGGTTTTCGATTTTTC+TGG | + | chr4_2:50233644-50233663 | Msa0604590:intron | 40.0% |
| ACCCAGAAAAATCGAAAACC+AGG | - | chr4_2:50233649-50233668 | None:intergenic | 40.0% | |
| CCGTAAGCAATAAACTGGAA+AGG | - | chr4_2:50233782-50233801 | None:intergenic | 40.0% | |
| CCATACCGTAAGCAATAAAC+TGG | - | chr4_2:50233787-50233806 | None:intergenic | 40.0% | |
| CCAGTTTATTGCTTACGGTA+TGG | + | chr4_2:50233784-50233803 | Msa0604590:intron | 40.0% | |
| ATCAAAAAGATCCATGAGGC+AGG | - | chr4_2:50233890-50233909 | None:intergenic | 40.0% | |
| ACGTACGGTTGTTATGTACT+TGG | + | chr4_2:50233982-50234001 | Msa0604590:intron | 40.0% | |
| ! | TGCTTATATTTAGGACCGGA+GGG | - | chr4_2:50234140-50234159 | None:intergenic | 40.0% |
| ! | TTGCTTATATTTAGGACCGG+AGG | - | chr4_2:50234139-50234158 | None:intergenic | 40.0% |
| ! | TTGCTTATATTTAGGACCGG+AGG | + | chr4_2:50234139-50234158 | Msa0604590:intron | 40.0% |
| ! | TGCTTATATTTAGGACCGGA+GGG | + | chr4_2:50234140-50234159 | Msa0604590:intron | 40.0% |
| !! | ACCATTATTGAGGTTGGTCT+CGG | - | chr4_2:50234344-50234363 | None:intergenic | 40.0% |
| ! | GCAAACTTTTGTTGCTGTCA+AGG | - | chr4_2:50234553-50234572 | None:intergenic | 40.0% |
| TTGCAAGACAGCCTAAATGT+TGG | + | chr4_2:50234587-50234606 | Msa0604590:CDS | 40.0% | |
| !! | CACTTCTGAAGCCAACATTT+AGG | - | chr4_2:50234601-50234620 | None:intergenic | 40.0% |
| ! | TACTTCCGGAAAAGTACAAG+AGG | + | chr4_2:50234673-50234692 | Msa0604590:CDS | 40.0% |
| TTACAGCAAGACGTTACCAT+AGG | + | chr4_2:50234781-50234800 | Msa0604590:intron | 40.0% | |
| CGTAAAAGATCATCTGTTGC+TGG | + | chr4_2:50234942-50234961 | Msa0604590:CDS | 40.0% | |
| ATGACCGTGATAAAAGCTCA+AGG | + | chr4_2:50234973-50234992 | Msa0604590:CDS | 40.0% | |
| !! | GAATGAGAGAACTTTTTGGG+TGG | - | chr4_2:50235254-50235273 | None:intergenic | 40.0% |
| CTGCTGGATGATTATGAACT+TGG | + | chr4_2:50235393-50235412 | Msa0604590:CDS | 40.0% | |
| TAGTTGAGAATACCTACCTC+CGG | - | chr4_2:50235474-50235493 | None:intergenic | 40.0% | |
| TTTCCCTATGCAGAAAAAGG+AGG | + | chr4_2:50235569-50235588 | Msa0604590:intron | 40.0% | |
| ! | TTGCCTCCTTTTTCTGCATA+GGG | - | chr4_2:50235575-50235594 | None:intergenic | 40.0% |
| ! | TTTGCCTCCTTTTTCTGCAT+AGG | - | chr4_2:50235576-50235595 | None:intergenic | 40.0% |
| CAAAATCTTCCACCAATCGA+AGG | + | chr4_2:50235592-50235611 | Msa0604590:CDS | 40.0% | |
| AATTCACTGCACATCTTACG+TGG | + | chr4_2:50235871-50235890 | Msa0604590:intron | 40.0% | |
| AATATTTAGCTGCAGTGGTG+GGG | + | chr4_2:50235952-50235971 | Msa0604590:intron | 40.0% | |
| ! | GTGACTTGTCCCTAAAAGAA+TGG | - | chr4_2:50236108-50236127 | None:intergenic | 40.0% |
| !! | TTTTAGGGACAAGTCACCTA+GGG | + | chr4_2:50236111-50236130 | Msa0604590:CDS | 40.0% |
| ACAAGTCACCTAGGGTAAAA+TGG | + | chr4_2:50236119-50236138 | Msa0604590:CDS | 40.0% | |
| ! | TGTTTCGACCATTTTACCCT+AGG | - | chr4_2:50236130-50236149 | None:intergenic | 40.0% |
| TTACTTGTCTGTGCTCTTCA+TGG | + | chr4_2:50236474-50236493 | Msa0604590:intron | 40.0% | |
| ! | AAAATGGATTCTCAAGGGAG+CGG | - | chr4_2:50236984-50237003 | None:intergenic | 40.0% |
| CTCTTGTAATCTGAATGTGC+AGG | + | chr4_2:50237188-50237207 | Msa0604590:intron | 40.0% | |
| TAATCTGAATGTGCAGGAAG+AGG | + | chr4_2:50237194-50237213 | Msa0604590:intron | 40.0% | |
| !! | CAGTGCTGATGTTAAAGATC+AGG | + | chr4_2:50237236-50237255 | Msa0604590:CDS | 40.0% |
| TGCTGATGTTAAAGATCAGG+AGG | + | chr4_2:50237239-50237258 | Msa0604590:CDS | 40.0% | |
| TCACTATCATCAGATTGCTC+TGG | - | chr4_2:50237285-50237304 | None:intergenic | 40.0% | |
| GTAATACTTTCTCGAAGTCC+AGG | + | chr4_2:50237443-50237462 | Msa0604590:three_prime_UTR | 40.0% | |
| AGAGCAAAGGGTGAGAAACA+AGG | - | chr4_2:50232848-50232867 | None:intergenic | 45.0% | |
| AGAGCGAGGAAAAGAGCAAA+GGG | - | chr4_2:50232860-50232879 | None:intergenic | 45.0% | |
| AAATGAGAGTGAAGAGAGCG+AGG | - | chr4_2:50232874-50232893 | None:intergenic | 45.0% | |
| TATCTCCCTGTAGCACTTCT+TGG | + | chr4_2:50233313-50233332 | Msa0604590:intron | 45.0% | |
| !! | CTATGCCAAGAAGTGCTACA+GGG | - | chr4_2:50233321-50233340 | None:intergenic | 45.0% |
| !! | ACTATGCCAAGAAGTGCTAC+AGG | - | chr4_2:50233322-50233341 | None:intergenic | 45.0% |
| ACTCGCTTGCGACTTAAGAA+GGG | - | chr4_2:50233445-50233464 | None:intergenic | 45.0% | |
| TACTCGCTTGCGACTTAAGA+AGG | - | chr4_2:50233446-50233465 | None:intergenic | 45.0% | |
| CAAGGATGTAAAGGCCTAGT+CGG | + | chr4_2:50233502-50233521 | Msa0604590:intron | 45.0% | |
| !! | TTATCACCGCTTTTCTGTCC+TGG | + | chr4_2:50233628-50233647 | Msa0604590:intron | 45.0% |
| CGAAAACCAGGACAGAAAAG+CGG | - | chr4_2:50233637-50233656 | None:intergenic | 45.0% | |
| TTATTGCTTACGGTATGGCG+AGG | + | chr4_2:50233789-50233808 | Msa0604590:intron | 45.0% | |
| AAAAGATCCATGAGGCAGGT+TGG | - | chr4_2:50233886-50233905 | None:intergenic | 45.0% | |
| TGCTGCACGTGGTTAGTAAT+GGG | + | chr4_2:50233930-50233949 | Msa0604590:intron | 45.0% | |
| ATGCTACCTCGTCTGTAGAT+GGG | + | chr4_2:50234272-50234291 | Msa0604590:CDS | 45.0% | |
| ! | AATGGATTTAGTGACGGTGG+GGG | - | chr4_2:50234320-50234339 | None:intergenic | 45.0% |
| ! | GAATGGATTTAGTGACGGTG+GGG | - | chr4_2:50234321-50234340 | None:intergenic | 45.0% |
| ! | GGAATGGATTTAGTGACGGT+GGG | - | chr4_2:50234322-50234341 | None:intergenic | 45.0% |
| ! | CTCGGGAATGGATTTAGTGA+CGG | - | chr4_2:50234326-50234345 | None:intergenic | 45.0% |
| !! | CCATTATTGAGGTTGGTCTC+GGG | - | chr4_2:50234343-50234362 | None:intergenic | 45.0% |
| TGTCAAGGAATGCAGTGGAT+GGG | - | chr4_2:50234538-50234557 | None:intergenic | 45.0% | |
| AAGATCATCTGTTGCTGGTG+TGG | + | chr4_2:50234947-50234966 | Msa0604590:CDS | 45.0% | |
| ! | GCTGCCTTGAGCTTTTATCA+CGG | - | chr4_2:50234980-50234999 | None:intergenic | 45.0% |
| ! | AAATGATGACGAGGACGAAG+TGG | + | chr4_2:50235109-50235128 | Msa0604590:CDS | 45.0% |
| TCTCGGCGAAGAAAAAGACA+AGG | + | chr4_2:50235275-50235294 | Msa0604590:CDS | 45.0% | |
| TGCAGAAAATAAGGAGCGAC+CGG | + | chr4_2:50235452-50235471 | Msa0604590:CDS | 45.0% | |
| ! | TGTTGCTTACCTTCGATTGG+TGG | - | chr4_2:50235604-50235623 | None:intergenic | 45.0% |
| !! | CTGTGTTGCTTACCTTCGAT+TGG | - | chr4_2:50235607-50235626 | None:intergenic | 45.0% |
| GGGGATTTCTTTCATGATGC+TGG | + | chr4_2:50235971-50235990 | Msa0604590:CDS | 45.0% | |
| ! | TGCTGGTGCTAATAGTGAAG+AGG | + | chr4_2:50235988-50236007 | Msa0604590:CDS | 45.0% |
| !! | CTTTTAGGGACAAGTCACCT+AGG | + | chr4_2:50236110-50236129 | Msa0604590:CDS | 45.0% |
| !! | ACATAGGCTCTGAAGGAGTT+TGG | + | chr4_2:50236309-50236328 | Msa0604590:intron | 45.0% |
| ! | GGCTTCCTGATTTGCATTAG+TGG | - | chr4_2:50236646-50236665 | None:intergenic | 45.0% |
| GTCTTCAGTAGTGTCTTCAG+TGG | - | chr4_2:50236667-50236686 | None:intergenic | 45.0% | |
| ACTACTGAAGACATGTCACC+TGG | + | chr4_2:50236675-50236694 | Msa0604590:CDS | 45.0% | |
| ! | AAATGGATTCTCAAGGGAGC+GGG | - | chr4_2:50236983-50237002 | None:intergenic | 45.0% |
| TAAAGATCAGGAGGATCCCA+TGG | + | chr4_2:50237248-50237267 | Msa0604590:CDS | 45.0% | |
| TCTGGACTATGATACGCCAT+GGG | - | chr4_2:50237267-50237286 | None:intergenic | 45.0% | |
| GAGAGCGAGGAAAAGAGCAA+AGG | - | chr4_2:50232861-50232880 | None:intergenic | 50.0% | |
| GGCTGCGAAATTCAGAAGAG+AGG | - | chr4_2:50232950-50232969 | None:intergenic | 50.0% | |
| GACCTCAAACCCCAACTTTC+CGG | + | chr4_2:50232984-50233003 | Msa0604590:five_prime_UTR | 50.0% | |
| AGCGAATCCACCGGAAAGTT+GGG | - | chr4_2:50232997-50233016 | None:intergenic | 50.0% | |
| TGATTGGACAGCGAATCCAC+CGG | - | chr4_2:50233006-50233025 | None:intergenic | 50.0% | |
| TAGACAGGAGAAGACCGACT+AGG | - | chr4_2:50233519-50233538 | None:intergenic | 50.0% | |
| CATTACTAACCACGTGCAGC+AGG | - | chr4_2:50233931-50233950 | None:intergenic | 50.0% | |
| CTGCTGCACGTGGTTAGTAA+TGG | + | chr4_2:50233929-50233948 | Msa0604590:intron | 50.0% | |
| TTTGACCTTCGGCGCAAACT+TGG | - | chr4_2:50234212-50234231 | None:intergenic | 50.0% | |
| CATGCTACCTCGTCTGTAGA+TGG | + | chr4_2:50234271-50234290 | Msa0604590:CDS | 50.0% | |
| GTTCTTCCCATCTACAGACG+AGG | - | chr4_2:50234281-50234300 | None:intergenic | 50.0% | |
| ! | GGGAATGGATTTAGTGACGG+TGG | - | chr4_2:50234323-50234342 | None:intergenic | 50.0% |
| !! | ATTGAGGTTGGTCTCGGGAA+TGG | - | chr4_2:50234338-50234357 | None:intergenic | 50.0% |
| CCCGAGACCAACCTCAATAA+TGG | + | chr4_2:50234340-50234359 | Msa0604590:CDS | 50.0% | |
| GTCAAGGAATGCAGTGGATG+GGG | - | chr4_2:50234537-50234556 | None:intergenic | 50.0% | |
| CTGTCAAGGAATGCAGTGGA+TGG | - | chr4_2:50234539-50234558 | None:intergenic | 50.0% | |
| GTTGCTGTCAAGGAATGCAG+TGG | - | chr4_2:50234543-50234562 | None:intergenic | 50.0% | |
| !! | GTTGGCTTCAGAAGTGCTTC+AGG | + | chr4_2:50234605-50234624 | Msa0604590:CDS | 50.0% |
| ATCATCTGTTGCTGGTGTGG+AGG | + | chr4_2:50234950-50234969 | Msa0604590:CDS | 50.0% | |
| TTTCATTCCCACAGTGGACC+AGG | + | chr4_2:50235368-50235387 | Msa0604590:intron | 50.0% | |
| CATAATCATCCAGCAGAGCC+TGG | - | chr4_2:50235389-50235408 | None:intergenic | 50.0% | |
| AGAAAATAAGGAGCGACCGG+AGG | + | chr4_2:50235455-50235474 | Msa0604590:CDS | 50.0% | |
| ! | AATGGATTCTCAAGGGAGCG+GGG | - | chr4_2:50236982-50237001 | None:intergenic | 50.0% |
| GGAAGAGGTTGCAACAACTG+AGG | + | chr4_2:50237209-50237228 | Msa0604590:intron | 50.0% | |
| AGAGGTTGCAACAACTGAGG+AGG | + | chr4_2:50237212-50237231 | Msa0604590:CDS | 50.0% | |
| CTCTGGACTATGATACGCCA+TGG | - | chr4_2:50237268-50237287 | None:intergenic | 50.0% | |
| !! | TGAGGTCGCGATTTCGGGTT+CGG | - | chr4_2:50232971-50232990 | None:intergenic | 55.0% |
| ! | GGGTTTGAGGTCGCGATTTC+GGG | - | chr4_2:50232976-50232995 | None:intergenic | 55.0% |
| ! | GGGGTTTGAGGTCGCGATTT+CGG | - | chr4_2:50232977-50232996 | None:intergenic | 55.0% |
| CACCGGAAAGTTGGGGTTTG+AGG | - | chr4_2:50232989-50233008 | None:intergenic | 55.0% | |
| CTCAAACCCCAACTTTCCGG+TGG | + | chr4_2:50232987-50233006 | Msa0604590:five_prime_UTR | 55.0% | |
| GCGAATCCACCGGAAAGTTG+GGG | - | chr4_2:50232996-50233015 | None:intergenic | 55.0% | |
| CAGCGAATCCACCGGAAAGT+TGG | - | chr4_2:50232998-50233017 | None:intergenic | 55.0% | |
| CATAGAAGACATAGCCGGCG+TGG | - | chr4_2:50233604-50233623 | None:intergenic | 55.0% | |
| !! | GATCCATGAGGCAGGTTGGT+TGG | - | chr4_2:50233882-50233901 | None:intergenic | 55.0% |
| TTCGGCGCAAACTTGGCACT+AGG | - | chr4_2:50234205-50234224 | None:intergenic | 55.0% | |
| TAGTGCCAAGTTTGCGCCGA+AGG | + | chr4_2:50234204-50234223 | Msa0604590:intron | 55.0% | |
| AATAAGGAGCGACCGGAGGT+AGG | + | chr4_2:50235459-50235478 | Msa0604590:intron | 55.0% | |
| ATGGATTCTCAAGGGAGCGG+GGG | - | chr4_2:50236981-50237000 | None:intergenic | 55.0% | |
| AGGCCAACCAACCTGCCTCA+TGG | + | chr4_2:50233876-50233895 | Msa0604590:intron | 60.0% | |
| CTTGAAGCTCCTGCTGCACG+TGG | + | chr4_2:50233919-50233938 | Msa0604590:CDS | 60.0% | |
| AGCAGAGCCTGGTCCACTGT+GGG | - | chr4_2:50235378-50235397 | None:intergenic | 60.0% | |
| CAGCAGAGCCTGGTCCACTG+TGG | - | chr4_2:50235379-50235398 | None:intergenic | 65.0% | |
| CACAGTGGACCAGGCTCTGC+TGG | + | chr4_2:50235377-50235396 | Msa0604590:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 50232814 | 50237525 | 50232814 | ID=Msa0604590;Name=Msa0604590 |
| chr4_2 | mRNA | 50232814 | 50237525 | 50232814 | ID=Msa0604590-mRNA-1;Parent=Msa0604590;Name=Msa0604590-mRNA-1;_AED=0.11;_eAED=0.11;_QI=252|0.9|0.90|1|1|1|11|178|483 |
| chr4_2 | exon | 50232814 | 50233048 | 50232814 | ID=Msa0604590-mRNA-1:exon:11782;Parent=Msa0604590-mRNA-1 |
| chr4_2 | exon | 50233878 | 50233940 | 50233878 | ID=Msa0604590-mRNA-1:exon:11783;Parent=Msa0604590-mRNA-1 |
| chr4_2 | exon | 50234269 | 50234361 | 50234269 | ID=Msa0604590-mRNA-1:exon:11784;Parent=Msa0604590-mRNA-1 |
| chr4_2 | exon | 50234501 | 50234694 | 50234501 | ID=Msa0604590-mRNA-1:exon:11785;Parent=Msa0604590-mRNA-1 |
| chr4_2 | exon | 50234909 | 50235296 | 50234909 | ID=Msa0604590-mRNA-1:exon:11786;Parent=Msa0604590-mRNA-1 |
| chr4_2 | exon | 50235382 | 50235476 | 50235382 | ID=Msa0604590-mRNA-1:exon:11787;Parent=Msa0604590-mRNA-1 |
| chr4_2 | exon | 50235582 | 50235613 | 50235582 | ID=Msa0604590-mRNA-1:exon:11788;Parent=Msa0604590-mRNA-1 |
| chr4_2 | exon | 50235961 | 50236171 | 50235961 | ID=Msa0604590-mRNA-1:exon:11789;Parent=Msa0604590-mRNA-1 |
| chr4_2 | exon | 50236315 | 50236459 | 50236315 | ID=Msa0604590-mRNA-1:exon:11790;Parent=Msa0604590-mRNA-1 |
| chr4_2 | exon | 50236595 | 50236704 | 50236595 | ID=Msa0604590-mRNA-1:exon:11791;Parent=Msa0604590-mRNA-1 |
| chr4_2 | exon | 50237210 | 50237525 | 50237210 | ID=Msa0604590-mRNA-1:exon:11792;Parent=Msa0604590-mRNA-1 |
| chr4_2 | five_prime_UTR | 50232814 | 50233048 | 50232814 | ID=Msa0604590-mRNA-1:five_prime_utr;Parent=Msa0604590-mRNA-1 |
| chr4_2 | five_prime_UTR | 50233878 | 50233894 | 50233878 | ID=Msa0604590-mRNA-1:five_prime_utr;Parent=Msa0604590-mRNA-1 |
| chr4_2 | CDS | 50233895 | 50233940 | 50233895 | ID=Msa0604590-mRNA-1:cds;Parent=Msa0604590-mRNA-1 |
| chr4_2 | CDS | 50234269 | 50234361 | 50234269 | ID=Msa0604590-mRNA-1:cds;Parent=Msa0604590-mRNA-1 |
| chr4_2 | CDS | 50234501 | 50234694 | 50234501 | ID=Msa0604590-mRNA-1:cds;Parent=Msa0604590-mRNA-1 |
| chr4_2 | CDS | 50234909 | 50235296 | 50234909 | ID=Msa0604590-mRNA-1:cds;Parent=Msa0604590-mRNA-1 |
| chr4_2 | CDS | 50235382 | 50235476 | 50235382 | ID=Msa0604590-mRNA-1:cds;Parent=Msa0604590-mRNA-1 |
| chr4_2 | CDS | 50235582 | 50235613 | 50235582 | ID=Msa0604590-mRNA-1:cds;Parent=Msa0604590-mRNA-1 |
| chr4_2 | CDS | 50235961 | 50236171 | 50235961 | ID=Msa0604590-mRNA-1:cds;Parent=Msa0604590-mRNA-1 |
| chr4_2 | CDS | 50236315 | 50236459 | 50236315 | ID=Msa0604590-mRNA-1:cds;Parent=Msa0604590-mRNA-1 |
| chr4_2 | CDS | 50236595 | 50236704 | 50236595 | ID=Msa0604590-mRNA-1:cds;Parent=Msa0604590-mRNA-1 |
| chr4_2 | CDS | 50237210 | 50237347 | 50237210 | ID=Msa0604590-mRNA-1:cds;Parent=Msa0604590-mRNA-1 |
| chr4_2 | three_prime_UTR | 50237348 | 50237525 | 50237348 | ID=Msa0604590-mRNA-1:three_prime_utr;Parent=Msa0604590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
