AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0549430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549430 MtrunA17_Chr4g0033681 97.065 443 13 0 1 443 1 443 0.0 897
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549430 AT1G06110.1 56.081 444 186 3 1 443 1 436 0.0 534
Msa0549430 AT1G06110.2 54.450 382 165 3 1 381 1 374 3.43e-155 444
Msa0549430 AT1G06110.3 53.503 314 137 3 1 313 1 306 1.54e-118 348

Find 143 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAAGAGCGATTGAATT+TGG 0.151279 4_1:+44563506 Msa0549430:five_prime_UTR
ACAGTTCTTGCCAGCTTTAT+TGG 0.192292 4_1:+44565720 Msa0549430:CDS
CTTAGCTTCTGGAAAGTTAT+TGG 0.196198 4_1:-44564588 None:intergenic
ATCTTTAATGGTTGCAGCTC+TGG 0.201017 4_1:+44567888 Msa0549430:three_prime_UTR
GGCACTTCTTTGGGAATTAT+TGG 0.206564 4_1:+44564758 Msa0549430:CDS
TGGAATTCAGCTATCTTTAA+TGG 0.215866 4_1:+44567876 Msa0549430:three_prime_UTR
TCTATTGGTAAGAAGATTTC+TGG 0.228491 4_1:-44564975 None:intergenic
CGACACATCTGGCACTTCTT+TGG 0.247380 4_1:+44564748 Msa0549430:CDS
AAGTTCACGGAAGCAGATTT+TGG 0.254589 4_1:-44563668 None:intergenic
TCTTGGATTACCTGACTTAT+AGG 0.258678 4_1:-44564824 None:intergenic
TTTAGCGATTCATGAAATTA+TGG 0.264063 4_1:+44563561 Msa0549430:CDS
TATTTGCAGGGTAGTAATAT+TGG 0.268748 4_1:+44568009 Msa0549430:three_prime_UTR
GTTATTGACACATGAAATTC+TGG 0.273112 4_1:-44563608 None:intergenic
CAAAGAGTTTCCTTAGCTTC+TGG 0.283133 4_1:-44564599 None:intergenic
GCGAAATTTGCTGAGTTTCT+TGG 0.284995 4_1:-44564841 None:intergenic
TCCTTTACCGCTTTCATAAT+GGG 0.291364 4_1:+44564696 Msa0549430:CDS
ATCCTTTACCGCTTTCATAA+TGG 0.293459 4_1:+44564695 Msa0549430:CDS
TTGGAGAAAGAAGATGGATT+TGG 0.305406 4_1:+44563525 Msa0549430:exon
GAACAAAGAGGGGATTCTTC+TGG 0.316370 4_1:-44565166 None:intergenic
TGAGTATAAGAGAGACATTC+TGG 0.323833 4_1:+44563448 Msa0549430:five_prime_UTR
TCACCTCCGATGATTCTCTT+TGG 0.328831 4_1:+44563644 Msa0549430:CDS
TGAAATTCTGGCAATGTCTT+CGG 0.331618 4_1:-44563596 None:intergenic
GACACATCTGGCACTTCTTT+GGG 0.340145 4_1:+44564749 Msa0549430:CDS
GAATTTCATGTGTCAATAAC+AGG 0.340741 4_1:+44563611 Msa0549430:CDS
ATTTGCAGGGTAGTAATATT+GGG 0.341073 4_1:+44568010 Msa0549430:three_prime_UTR
GAAATTCTGGCAATGTCTTC+GGG 0.342990 4_1:-44563595 None:intergenic
ATTTATCTATATATATTTGC+AGG 0.347880 4_1:+44567996 Msa0549430:three_prime_UTR
TTGAATTTGGAGAAAGAAGA+TGG 0.376998 4_1:+44563519 Msa0549430:exon
GCCAGCTTTATTGGAGGCAC+TGG 0.385235 4_1:+44565729 Msa0549430:CDS
ACATGGCATCAAGTCTCTAT+TGG 0.400860 4_1:-44564990 None:intergenic
AGCTCTGGGTTATGTAGTTC+TGG 0.406119 4_1:+44567903 Msa0549430:three_prime_UTR
GATGGACAGCGAAAAGGTTC+AGG 0.412775 4_1:+44565045 Msa0549430:CDS
TGATAAAACCACTTTGTAAA+CGG 0.414113 4_1:-44565102 None:intergenic
CAGCAAATTTCGCACAACTT+AGG 0.416246 4_1:+44564851 Msa0549430:CDS
CACACATCCTTGAGGTTGTA+AGG 0.423219 4_1:-44565681 None:intergenic
GAAGGAAAAGCATACCTTCC+AGG 0.424053 4_1:-44566762 None:intergenic
GTAAGCATCATAAGAGAAGC+AGG 0.425314 4_1:+44563416 Msa0549430:five_prime_UTR
GGGGTTTCCGAGATGATCAA+TGG 0.428590 4_1:-44563704 None:intergenic
GTCAATGGAGAAGCTGTTAT+AGG 0.428770 4_1:+44565785 Msa0549430:CDS
TCTTTAATGGTTGCAGCTCT+GGG 0.431423 4_1:+44567889 Msa0549430:three_prime_UTR
ATTCACGAAATGATCATAGA+AGG 0.432687 4_1:-44564789 None:intergenic
TTTATCAAACTGCTTGAAGA+AGG 0.436769 4_1:+44565118 Msa0549430:CDS
ACATCATCAGGTTCCATTGA+AGG 0.440193 4_1:+44566723 Msa0549430:CDS
TCGCCTCTGCCAACATCATC+AGG 0.441223 4_1:+44566711 Msa0549430:CDS
AAAGGTAAAGGAACCTTCAA+TGG 0.442463 4_1:-44566736 None:intergenic
TGCAGGAAGCTTATCAAACT+TGG 0.443709 4_1:+44564486 Msa0549430:intron
TGGAAAGTTATTGGTGAGCC+AGG 0.447285 4_1:-44564579 None:intergenic
CTTGGTTGTTGAGTTTAAGT+TGG 0.450231 4_1:+44567952 Msa0549430:three_prime_UTR
AAACCCCACCCCTTCCTTCA+AGG 0.450980 4_1:+44563720 Msa0549430:CDS
ACTAGGAATGGATCCCCTCT+TGG 0.451464 4_1:-44567795 None:intergenic
TTATTTATTACCTATAAGTC+AGG 0.471713 4_1:+44564814 Msa0549430:CDS
AGAAGCTGAGATTCAAGAGT+TGG 0.474189 4_1:+44564634 Msa0549430:CDS
GCCCATTATGAAAGCGGTAA+AGG 0.478015 4_1:-44564697 None:intergenic
TATATATAGATAAATACAAC+GGG 0.483059 4_1:-44567988 None:intergenic
GTTACTTTGTATGAGTTGCT+TGG 0.484412 4_1:+44567934 Msa0549430:three_prime_UTR
GATCACGATACCGACACATC+TGG 0.487084 4_1:+44564737 Msa0549430:CDS
CCTTTACCTTTGTACCTGGA+AGG 0.487933 4_1:+44566748 Msa0549430:CDS
AAGCGGTAAAGGATCCTTGT+AGG 0.488371 4_1:-44564686 None:intergenic
CTAGGAATGGATCCCCTCTT+GGG 0.488504 4_1:-44567794 None:intergenic
CCAATGGTCAACTATACGTT+GGG 0.491943 4_1:+44564951 Msa0549430:CDS
ACTTCTTTGGGAATTATTGG+TGG 0.492745 4_1:+44564761 Msa0549430:CDS
TTGTCACCTGGACGCAAAAG+TGG 0.498007 4_1:-44566666 None:intergenic
AGCAGCCACAAGAACATACT+TGG 0.498864 4_1:-44564888 None:intergenic
CTCTCCTACCTGCACACCAT+TGG 0.499292 4_1:-44565200 None:intergenic
GCAAATCAGAAAATATAGTC+TGG 0.500494 4_1:-44567846 None:intergenic
CCTCAAGGATGTGTGATCAA+TGG 0.501342 4_1:+44565689 Msa0549430:CDS
TGCTGTAACCAATGGTGTGC+AGG 0.507410 4_1:+44565192 Msa0549430:CDS
GAAATGAAGAGTGACCTTGA+AGG 0.511250 4_1:-44563734 None:intergenic
TTCTTCCTCAACTGTACCAA+TGG 0.511902 4_1:+44564935 Msa0549430:CDS
TAAGCGTGTCAAAAGGTGTT+GGG 0.513341 4_1:+44564544 Msa0549430:CDS
GTTCTTGCCAGCTTTATTGG+AGG 0.513504 4_1:+44565723 Msa0549430:CDS
GGAAATGTGCAACTTGAACT+AGG 0.514894 4_1:-44567812 None:intergenic
CTCTGCATTGCTTGTCCCTG+AGG 0.515170 4_1:+44565601 Msa0549430:CDS
TGACCTTGAAGGAAGGGGTG+GGG 0.528849 4_1:-44563723 None:intergenic
TGTGCAACTTGAACTAGGAA+TGG 0.529774 4_1:-44567807 None:intergenic
AAGATGGATTTGGAATCAGT+TGG 0.532078 4_1:+44563535 Msa0549430:exon
CCTTCCAGGTACAAAGGTAA+AGG 0.532280 4_1:-44566748 None:intergenic
TCATGAGATGGACAGCGAAA+AGG 0.532916 4_1:+44565039 Msa0549430:CDS
ATATAGTCTGGCAGCTGAAG+AGG 0.532999 4_1:-44567834 None:intergenic
GAATTCAGTGTACTTGACAT+AGG 0.538387 4_1:+44568140 Msa0549430:three_prime_UTR
CAATAACTTTCCAGAAGCTA+AGG 0.538757 4_1:+44564589 Msa0549430:CDS
TCCAGTGCCTCCAATAAAGC+TGG 0.538989 4_1:-44565730 None:intergenic
TCTGCATTGCTTGTCCCTGA+GGG 0.539663 4_1:+44565602 Msa0549430:CDS
GGGTTTCCGAGATGATCAAT+GGG 0.541622 4_1:-44563703 None:intergenic
TCAAATTGCCTCTTCCTACA+AGG 0.542221 4_1:+44564672 Msa0549430:CDS
TAAAGGATCCTTGTAGGAAG+AGG 0.548947 4_1:-44564680 None:intergenic
TTTCTTGCCCATTATGAAAG+CGG 0.550873 4_1:-44564703 None:intergenic
GGTTCCTTTACCTTTGTACC+TGG 0.551215 4_1:+44566744 Msa0549430:CDS
AGCTGAGATTCAAGAGTTGG+AGG 0.553076 4_1:+44564637 Msa0549430:CDS
GTGACCTTGAAGGAAGGGGT+GGG 0.553140 4_1:-44563724 None:intergenic
TTAAGCGTGTCAAAAGGTGT+TGG 0.554883 4_1:+44564543 Msa0549430:CDS
TTTGGACCAAAGAGAATCAT+CGG 0.554950 4_1:-44563650 None:intergenic
GATTAGTTTGCATCATGAGA+TGG 0.556689 4_1:+44565027 Msa0549430:CDS
CTCTTGTTAAGCGTGTCAAA+AGG 0.560024 4_1:+44564537 Msa0549430:CDS
TATAGTCTGGCAGCTGAAGA+GGG 0.560639 4_1:-44567833 None:intergenic
GTTGAGTGAGAGAAAGTTCA+CGG 0.563690 4_1:-44563681 None:intergenic
GAAGAGTGACCTTGAAGGAA+GGG 0.569439 4_1:-44563729 None:intergenic
TGTTCAATTGCTGTAACCAA+TGG 0.569975 4_1:+44565184 Msa0549430:CDS
TGGAGAAGCTGTTATAGGAA+TGG 0.573312 4_1:+44565790 Msa0549430:CDS
TAAACAAATTCTTTGTCACC+TGG 0.573428 4_1:-44566678 None:intergenic
CATGGTCACCGTTTACAAAG+TGG 0.576346 4_1:+44565094 Msa0549430:CDS
TTACAGCAATTGAACAAAGA+GGG 0.580363 4_1:-44565177 None:intergenic
CAAAGAAGTGCCAGATGTGT+CGG 0.581288 4_1:-44564747 None:intergenic
TCAGATTGGTAGACCCAAGA+GGG 0.581808 4_1:+44567781 Msa0549430:intron
AAGATCCAAGTATGTTCTTG+TGG 0.582780 4_1:+44564883 Msa0549430:CDS
CTCTTCTAACCACAGTAGCA+TGG 0.585678 4_1:-44565071 None:intergenic
GTTGACCATTGGTACAGTTG+AGG 0.585919 4_1:-44564940 None:intergenic
ATAAAGCTGGCAAGAACTGT+GGG 0.586845 4_1:-44565717 None:intergenic
AAGAGTGACCTTGAAGGAAG+GGG 0.587315 4_1:-44563728 None:intergenic
AAGAAAATAAATACTTCTCA+CGG 0.587786 4_1:-44565643 None:intergenic
CGCATGTCCTTACAACCTCA+AGG 0.588272 4_1:+44565674 Msa0549430:CDS
TTTATCTATATATATTTGCA+GGG 0.588911 4_1:+44567997 Msa0549430:three_prime_UTR
GCTGTAGTATCTGATGTCAA+TGG 0.588939 4_1:+44565770 Msa0549430:CDS
AGCATACCTTCCAGGTACAA+AGG 0.589560 4_1:-44566754 None:intergenic
TGAAGAGTGACCTTGAAGGA+AGG 0.590117 4_1:-44563730 None:intergenic
ACTCAACCCATTGATCATCT+CGG 0.590506 4_1:+44563697 Msa0549430:CDS
GTTACAGCAATTGAACAAAG+AGG 0.594804 4_1:-44565178 None:intergenic
CTCAGGGACAAGCAATGCAG+AGG 0.595109 4_1:-44565600 None:intergenic
ACCAATGGTCAACTATACGT+TGG 0.600485 4_1:+44564950 Msa0549430:CDS
AATAAAGCTGGCAAGAACTG+TGG 0.601208 4_1:-44565718 None:intergenic
CCATTGATCACACATCCTTG+AGG 0.606270 4_1:-44565689 None:intergenic
CTTGAGGTTGTAAGGACATG+CGG 0.606466 4_1:-44565673 None:intergenic
TTTGAAGATCAACACCCTCA+GGG 0.608592 4_1:-44565616 None:intergenic
AGTGACCTTGAAGGAAGGGG+TGG 0.608618 4_1:-44563725 None:intergenic
TTCAGGATGCCATGCTACTG+TGG 0.609877 4_1:+44565062 Msa0549430:CDS
TACAGCAATTGAACAAAGAG+GGG 0.619325 4_1:-44565176 None:intergenic
ATCAGATTCTGAGGAACACA+TGG 0.619535 4_1:-44565007 None:intergenic
TGCAAACTAATCAGATTCTG+AGG 0.620468 4_1:-44565016 None:intergenic
CCCAACGTATAGTTGACCAT+TGG 0.621068 4_1:-44564951 None:intergenic
GCTAAGGAAACTCTTTGTGA+AGG 0.621981 4_1:+44564605 Msa0549430:CDS
ATATATATAGATAAATACAA+CGG 0.628014 4_1:-44567989 None:intergenic
TGTCACCTGGACGCAAAAGT+GGG 0.631556 4_1:-44566665 None:intergenic
GAACAACTTCTCACTGTACG+TGG 0.632489 4_1:-44564915 None:intergenic
GAACCTGATGATGTTGGCAG+AGG 0.633631 4_1:-44566714 None:intergenic
TTATTGTAAAACATATGTCG+TGG 0.641302 4_1:+44568118 Msa0549430:three_prime_UTR
TAAGCATCATAAGAGAAGCA+GGG 0.653445 4_1:+44563417 Msa0549430:five_prime_UTR
ATACTACAGCATCATTAGCA+CGG 0.661033 4_1:-44565757 None:intergenic
CTACTGTGGTTAGAAGAGCA+TGG 0.661571 4_1:+44565076 Msa0549430:CDS
ACACGCTTAACAAGAGACCA+AGG 0.679161 4_1:-44564530 None:intergenic
TTCAGATTGGTAGACCCAAG+AGG 0.682042 4_1:+44567780 Msa0549430:intron
TCAATGGAACCTGATGATGT+TGG 0.689960 4_1:-44566720 None:intergenic
CAGATTGGTAGACCCAAGAG+GGG 0.700099 4_1:+44567782 Msa0549430:intron
GGACCAAAGAGAATCATCGG+AGG 0.726604 4_1:-44563647 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATACATTTAAAGAA+AGG - chr4_1:44565841-44565860 None:intergenic 10.0%
!! ATATATATAGATAAATACAA+CGG - chr4_1:44567992-44568011 None:intergenic 10.0%
!!! AATTATGTTGTTTTATCATA+AGG + chr4_1:44563792-44563811 Msa0549430:intron 15.0%
!! ACTTAAAAAAAACACATTTA+AGG - chr4_1:44564209-44564228 None:intergenic 15.0%
!!! ATATATAGAAAAGTATACAA+TGG + chr4_1:44566305-44566324 Msa0549430:intron 15.0%
!! TTAAAAAATAATTAATGCGA+TGG + chr4_1:44567144-44567163 Msa0549430:intron 15.0%
!! TAAAAAATAATTAATGCGAT+GGG + chr4_1:44567145-44567164 Msa0549430:intron 15.0%
!!! CTTCCATTTATTTTTATAAA+TGG + chr4_1:44567228-44567247 Msa0549430:intron 15.0%
!! TCTCCATTTATAAAAATAAA+TGG - chr4_1:44567234-44567253 None:intergenic 15.0%
!!! ATTTATTTTTATAAATGGAG+AGG + chr4_1:44567233-44567252 Msa0549430:intron 15.0%
!! TATATATAGATAAATACAAC+GGG - chr4_1:44567991-44568010 None:intergenic 15.0%
!! ATTTATCTATATATATTTGC+AGG + chr4_1:44567996-44568015 Msa0549430:three_prime_UTR 15.0%
!! TTTATCTATATATATTTGCA+GGG + chr4_1:44567997-44568016 Msa0549430:three_prime_UTR 15.0%
!! TTATTTATTACCTATAAGTC+AGG + chr4_1:44564814-44564833 Msa0549430:CDS 20.0%
!! AAACTTTGATACGATATAAA+TGG - chr4_1:44565399-44565418 None:intergenic 20.0%
!! AAGAAAATAAATACTTCTCA+CGG - chr4_1:44565646-44565665 None:intergenic 20.0%
!! TACATTTAAAGAAAGGATAT+TGG - chr4_1:44565834-44565853 None:intergenic 20.0%
!! GTAATAACTTAATTGCATAT+AGG + chr4_1:44566099-44566118 Msa0549430:intron 20.0%
!! TATAAATACTTGCATTTGAA+AGG - chr4_1:44566596-44566615 None:intergenic 20.0%
!! ATTTATCAAAGTAAGTAGTT+TGG - chr4_1:44566633-44566652 None:intergenic 20.0%
!!! TTCATTATCTTTGATTAGTT+TGG + chr4_1:44566816-44566835 Msa0549430:intron 20.0%
!! TCAAGTATATCAGATAAAAA+GGG - chr4_1:44566899-44566918 None:intergenic 20.0%
!! TTCAAGTATATCAGATAAAA+AGG - chr4_1:44566900-44566919 None:intergenic 20.0%
!! TTCTTCAATATATGATAAAC+AGG + chr4_1:44567468-44567487 Msa0549430:intron 20.0%
!!! TTCAAACTAATGTTAACTTT+TGG + chr4_1:44567601-44567620 Msa0549430:intron 20.0%
!!! TCAAACTAATGTTAACTTTT+GGG + chr4_1:44567602-44567621 Msa0549430:intron 20.0%
! TTTAGCGATTCATGAAATTA+TGG + chr4_1:44563561-44563580 Msa0549430:CDS 25.0%
! TCAAACTCAATTTCTTCTTA+AGG - chr4_1:44563824-44563843 None:intergenic 25.0%
! CATTAAATAACTGATGTATC+TGG - chr4_1:44563973-44563992 None:intergenic 25.0%
!! TTATTAGAGCAAAGTCATTT+TGG - chr4_1:44564316-44564335 None:intergenic 25.0%
! ATATGAAAGTAATTGACATG+TGG + chr4_1:44564344-44564363 Msa0549430:intron 25.0%
! TGATAAAACCACTTTGTAAA+CGG - chr4_1:44565105-44565124 None:intergenic 25.0%
! ATATAAATGGTAAAACATCC+GGG - chr4_1:44565386-44565405 None:intergenic 25.0%
! GATATAAATGGTAAAACATC+CGG - chr4_1:44565387-44565406 None:intergenic 25.0%
! AAGAGAATAGACAATTGAAT+TGG - chr4_1:44565488-44565507 None:intergenic 25.0%
! ATTTAAAGAAAGGATATTGG+AGG - chr4_1:44565831-44565850 None:intergenic 25.0%
! ATCGATATTGTTGAAGTTAT+AGG - chr4_1:44566028-44566047 None:intergenic 25.0%
! TAATATAGAAGTCTATGTGT+TGG + chr4_1:44566839-44566858 Msa0549430:intron 25.0%
! AATATAGAAGTCTATGTGTT+GGG + chr4_1:44566840-44566859 Msa0549430:intron 25.0%
! AAGGAGAAAAAAAAAAGATC+TGG - chr4_1:44567536-44567555 None:intergenic 25.0%
! ATTGAATCAATGACATTCAA+CGG - chr4_1:44567582-44567601 None:intergenic 25.0%
! AAAGATTAAGGTTTGAATAG+CGG - chr4_1:44567634-44567653 None:intergenic 25.0%
!!! ATATTTTCTGATTTGCTTCT+TGG + chr4_1:44567853-44567872 Msa0549430:exon 25.0%
!! GTTTTACAATAACAGTAGAT+TGG - chr4_1:44568110-44568129 None:intergenic 25.0%
! TTATTGTAAAACATATGTCG+TGG + chr4_1:44568118-44568137 Msa0549430:three_prime_UTR 25.0%
TTGAATTTGGAGAAAGAAGA+TGG + chr4_1:44563519-44563538 Msa0549430:exon 30.0%
GTTATTGACACATGAAATTC+TGG - chr4_1:44563611-44563630 None:intergenic 30.0%
GAATTTCATGTGTCAATAAC+AGG + chr4_1:44563611-44563630 Msa0549430:CDS 30.0%
GACTCTAATAATCCAAAGTT+AGG - chr4_1:44563892-44563911 None:intergenic 30.0%
ATAGGCACCAATAACAATTT+GGG + chr4_1:44564076-44564095 Msa0549430:intron 30.0%
! GGTTTTACCCAAATTGTTAT+TGG - chr4_1:44564086-44564105 None:intergenic 30.0%
! CAATTTGGGTAAAACCATTT+TGG + chr4_1:44564090-44564109 Msa0549430:intron 30.0%
CAAACATTCATGAACCAAAA+TGG - chr4_1:44564107-44564126 None:intergenic 30.0%
ACTAACTAAATAGACACTTG+AGG - chr4_1:44564177-44564196 None:intergenic 30.0%
!! AAGCTTTTGTTATGTATCCT+TGG + chr4_1:44564513-44564532 Msa0549430:CDS 30.0%
ATTCACGAAATGATCATAGA+AGG - chr4_1:44564792-44564811 None:intergenic 30.0%
TCTATTGGTAAGAAGATTTC+TGG - chr4_1:44564978-44564997 None:intergenic 30.0%
TTTATCAAACTGCTTGAAGA+AGG + chr4_1:44565118-44565137 Msa0549430:CDS 30.0%
! TGGAAAAAGACTAATGCTTT+TGG - chr4_1:44565149-44565168 None:intergenic 30.0%
TTACAGCAATTGAACAAAGA+GGG - chr4_1:44565180-44565199 None:intergenic 30.0%
!!! ACAGTTGGTTTTTTTCTCAT+TGG + chr4_1:44565446-44565465 Msa0549430:intron 30.0%
ACTATCTTAGTTTATCTCCT+TGG + chr4_1:44565988-44566007 Msa0549430:intron 30.0%
ATCGATTGTCTTGAAAAATC+TGG + chr4_1:44566042-44566061 Msa0549430:intron 30.0%
TCGATTGTCTTGAAAAATCT+GGG + chr4_1:44566043-44566062 Msa0549430:intron 30.0%
TTAAGTTATTACCCAAGCAT+CGG - chr4_1:44566091-44566110 None:intergenic 30.0%
CAAACAATAGACACTCTTTA+TGG - chr4_1:44566517-44566536 None:intergenic 30.0%
! GTGTCTATTGTTTGTAGTTT+TGG + chr4_1:44566523-44566542 Msa0549430:intron 30.0%
GTATTTATAGTTGAGTGAAG+TGG + chr4_1:44566607-44566626 Msa0549430:intron 30.0%
TAAACAAATTCTTTGTCACC+TGG - chr4_1:44566681-44566700 None:intergenic 30.0%
CAAAGATAATGAAATCACGT+GGG - chr4_1:44566809-44566828 None:intergenic 30.0%
TCAAAGATAATGAAATCACG+TGG - chr4_1:44566810-44566829 None:intergenic 30.0%
ATATAGAAGTCTATGTGTTG+GGG + chr4_1:44566841-44566860 Msa0549430:intron 30.0%
!! AGCTATCTGGAATTTTCTTA+TGG - chr4_1:44567033-44567052 None:intergenic 30.0%
ATCTCTCAAAATGGAAGAAA+TGG - chr4_1:44567098-44567117 None:intergenic 30.0%
TGTGTCTTTATCTCTCAAAA+TGG - chr4_1:44567107-44567126 None:intergenic 30.0%
ACACACAAAAGATAGATTGT+GGG - chr4_1:44567189-44567208 None:intergenic 30.0%
TACACACAAAAGATAGATTG+TGG - chr4_1:44567190-44567209 None:intergenic 30.0%
!!! ATGTTGTTTTGACATCTGTA+TGG + chr4_1:44567399-44567418 Msa0549430:intron 30.0%
TTCAAACCTTAATCTTTCCA+AGG + chr4_1:44567637-44567656 Msa0549430:intron 30.0%
GCAAATCAGAAAATATAGTC+TGG - chr4_1:44567849-44567868 None:intergenic 30.0%
TGGAATTCAGCTATCTTTAA+TGG + chr4_1:44567876-44567895 Msa0549430:three_prime_UTR 30.0%
TATTTGCAGGGTAGTAATAT+TGG + chr4_1:44568009-44568028 Msa0549430:three_prime_UTR 30.0%
ATTTGCAGGGTAGTAATATT+GGG + chr4_1:44568010-44568029 Msa0549430:three_prime_UTR 30.0%
TAAGCATCATAAGAGAAGCA+GGG + chr4_1:44563417-44563436 Msa0549430:five_prime_UTR 35.0%
TGAGTATAAGAGAGACATTC+TGG + chr4_1:44563448-44563467 Msa0549430:five_prime_UTR 35.0%
GAAGAAAGAGCGATTGAATT+TGG + chr4_1:44563506-44563525 Msa0549430:five_prime_UTR 35.0%
! TTGGAGAAAGAAGATGGATT+TGG + chr4_1:44563525-44563544 Msa0549430:exon 35.0%
! AAGATGGATTTGGAATCAGT+TGG + chr4_1:44563535-44563554 Msa0549430:exon 35.0%
TGAAATTCTGGCAATGTCTT+CGG - chr4_1:44563599-44563618 None:intergenic 35.0%
TTTGGACCAAAGAGAATCAT+CGG - chr4_1:44563653-44563672 None:intergenic 35.0%
CATAGGCACCAATAACAATT+TGG + chr4_1:44564075-44564094 Msa0549430:intron 35.0%
TACAAAGAAAGAGACACTTG+TGG + chr4_1:44564247-44564266 Msa0549430:intron 35.0%
TAACAACATCTCACTCATTC+AGG + chr4_1:44564288-44564307 Msa0549430:intron 35.0%
AACAACATCTCACTCATTCA+GGG + chr4_1:44564289-44564308 Msa0549430:intron 35.0%
ACACTAACACTTCAGATTGA+AGG - chr4_1:44564411-44564430 None:intergenic 35.0%
! TTCAATCTGAAGTGTTAGTG+TGG + chr4_1:44564410-44564429 Msa0549430:intron 35.0%
GTTGGGACAATATAAAAACC+TGG + chr4_1:44564561-44564580 Msa0549430:CDS 35.0%
! CTTAGCTTCTGGAAAGTTAT+TGG - chr4_1:44564591-44564610 None:intergenic 35.0%
CAATAACTTTCCAGAAGCTA+AGG + chr4_1:44564589-44564608 Msa0549430:CDS 35.0%
ATCCTTTACCGCTTTCATAA+TGG + chr4_1:44564695-44564714 Msa0549430:CDS 35.0%
TCCTTTACCGCTTTCATAAT+GGG + chr4_1:44564696-44564715 Msa0549430:CDS 35.0%
TTTCTTGCCCATTATGAAAG+CGG - chr4_1:44564706-44564725 None:intergenic 35.0%
! ACTTCTTTGGGAATTATTGG+TGG + chr4_1:44564761-44564780 Msa0549430:CDS 35.0%
TCTTGGATTACCTGACTTAT+AGG - chr4_1:44564827-44564846 None:intergenic 35.0%
AAGATCCAAGTATGTTCTTG+TGG + chr4_1:44564883-44564902 Msa0549430:CDS 35.0%
TGCAAACTAATCAGATTCTG+AGG - chr4_1:44565019-44565038 None:intergenic 35.0%
!! GATTAGTTTGCATCATGAGA+TGG + chr4_1:44565027-44565046 Msa0549430:CDS 35.0%
TACAGCAATTGAACAAAGAG+GGG - chr4_1:44565179-44565198 None:intergenic 35.0%
GTTACAGCAATTGAACAAAG+AGG - chr4_1:44565181-44565200 None:intergenic 35.0%
TGTTCAATTGCTGTAACCAA+TGG + chr4_1:44565184-44565203 Msa0549430:CDS 35.0%
CTTAGTACTAATGAGATGCA+TGG + chr4_1:44565311-44565330 Msa0549430:intron 35.0%
ATGTTATACTATATGCCTCC+CGG + chr4_1:44565365-44565384 Msa0549430:intron 35.0%
!!! TTTTTCTCATTGGTGTTGCA+TGG + chr4_1:44565456-44565475 Msa0549430:intron 35.0%
!!! TTTTCTCATTGGTGTTGCAT+GGG + chr4_1:44565457-44565476 Msa0549430:intron 35.0%
TTGTCTATTCTCTTGATCAC+TGG + chr4_1:44565494-44565513 Msa0549430:intron 35.0%
ATACTACAGCATCATTAGCA+CGG - chr4_1:44565760-44565779 None:intergenic 35.0%
GAAAGGATATTGGAGGAAAA+AGG - chr4_1:44565824-44565843 None:intergenic 35.0%
AGGTATTACAAACTAAGCCA+AGG - chr4_1:44566008-44566027 None:intergenic 35.0%
! TTGCATATAGGCTTTTCTCT+TGG + chr4_1:44566111-44566130 Msa0549430:intron 35.0%
TTGATCAGTTAGAATGCACT+TGG - chr4_1:44566180-44566199 None:intergenic 35.0%
AAGTGCATTCTAACTGATCA+AGG + chr4_1:44566179-44566198 Msa0549430:intron 35.0%
! TCATAAACGCTGTACTGTTT+TGG + chr4_1:44566479-44566498 Msa0549430:intron 35.0%
AAAGGTAAAGGAACCTTCAA+TGG - chr4_1:44566739-44566758 None:intergenic 35.0%
GTCAACAGCGATAATAATGA+AGG - chr4_1:44566783-44566802 None:intergenic 35.0%
AAGATACCGGATTGAACTTA+TGG + chr4_1:44566989-44567008 Msa0549430:intron 35.0%
AGATACCGGATTGAACTTAT+GGG + chr4_1:44566990-44567009 Msa0549430:intron 35.0%
TTCATCCCATAAGTTCAATC+CGG - chr4_1:44566998-44567017 None:intergenic 35.0%
GAAATGGAGAAGGTCATAAA+TGG - chr4_1:44567082-44567101 None:intergenic 35.0%
CAAAATGGAAGAAATGGAGA+AGG - chr4_1:44567092-44567111 None:intergenic 35.0%
GTTGTTTAGAGACTTCAGAA+TGG + chr4_1:44567266-44567285 Msa0549430:intron 35.0%
TATGAGAACATGAGATTGTC+CGG + chr4_1:44567320-44567339 Msa0549430:intron 35.0%
!! CTTTGAGGTATGTACCTTAA+CGG + chr4_1:44567344-44567363 Msa0549430:intron 35.0%
! TACCTTAACGGTGTATTTTC+CGG + chr4_1:44567356-44567375 Msa0549430:intron 35.0%
AACTGTCAAGTCAACTACTA+TGG + chr4_1:44567426-44567445 Msa0549430:intron 35.0%
TCTCCTTTCGTTTATGAGTA+AGG + chr4_1:44567549-44567568 Msa0549430:intron 35.0%
CTACCTTACTCATAAACGAA+AGG - chr4_1:44567555-44567574 None:intergenic 35.0%
AACCTTAATCTTTCCAAGGA+TGG + chr4_1:44567641-44567660 Msa0549430:intron 35.0%
ACCTTAATCTTTCCAAGGAT+GGG + chr4_1:44567642-44567661 Msa0549430:intron 35.0%
TTCTGTGTCTGATTTCAGAT+TGG + chr4_1:44567767-44567786 Msa0549430:intron 35.0%
!!! TTTTCTGATTTGCTTCTTGG+TGG + chr4_1:44567856-44567875 Msa0549430:exon 35.0%
! GTTACTTTGTATGAGTTGCT+TGG + chr4_1:44567934-44567953 Msa0549430:three_prime_UTR 35.0%
CTTGGTTGTTGAGTTTAAGT+TGG + chr4_1:44567952-44567971 Msa0549430:three_prime_UTR 35.0%
GAATTCAGTGTACTTGACAT+AGG + chr4_1:44568140-44568159 Msa0549430:three_prime_UTR 35.0%
! ATAGGCTTTTGTTCTCAAAG+AGG + chr4_1:44568158-44568177 Msa0549430:three_prime_UTR 35.0%
GTAAGCATCATAAGAGAAGC+AGG + chr4_1:44563416-44563435 Msa0549430:five_prime_UTR 40.0%
GAAATTCTGGCAATGTCTTC+GGG - chr4_1:44563598-44563617 None:intergenic 40.0%
! AAGTTCACGGAAGCAGATTT+TGG - chr4_1:44563671-44563690 None:intergenic 40.0%
GTTGAGTGAGAGAAAGTTCA+CGG - chr4_1:44563684-44563703 None:intergenic 40.0%
ACTCAACCCATTGATCATCT+CGG + chr4_1:44563697-44563716 Msa0549430:CDS 40.0%
GAAATGAAGAGTGACCTTGA+AGG - chr4_1:44563737-44563756 None:intergenic 40.0%
AATTGAGTTTGAATCCCAGC+TGG + chr4_1:44563832-44563851 Msa0549430:intron 40.0%
TAATCCAAAGTTAGGTCGAG+AGG - chr4_1:44563884-44563903 None:intergenic 40.0%
! ACATCCATGGACTATAAGGA+CGG - chr4_1:44564135-44564154 None:intergenic 40.0%
! CGATACATCCATGGACTATA+AGG - chr4_1:44564139-44564158 None:intergenic 40.0%
TTGCGATTTCGATACATCCA+TGG - chr4_1:44564148-44564167 None:intergenic 40.0%
AAGAAAGAGACACTTGTGGA+TGG + chr4_1:44564251-44564270 Msa0549430:intron 40.0%
! TGTGGATGGATTTGCAACTT+TGG + chr4_1:44564265-44564284 Msa0549430:intron 40.0%
ACACTTCAGATTGAAGGTCT+GGG - chr4_1:44564405-44564424 None:intergenic 40.0%
AACACTTCAGATTGAAGGTC+TGG - chr4_1:44564406-44564425 None:intergenic 40.0%
TGCAGGAAGCTTATCAAACT+TGG + chr4_1:44564486-44564505 Msa0549430:intron 40.0%
CTCTTGTTAAGCGTGTCAAA+AGG + chr4_1:44564537-44564556 Msa0549430:CDS 40.0%
! TTAAGCGTGTCAAAAGGTGT+TGG + chr4_1:44564543-44564562 Msa0549430:CDS 40.0%
!! TAAGCGTGTCAAAAGGTGTT+GGG + chr4_1:44564544-44564563 Msa0549430:CDS 40.0%
CAAAGAGTTTCCTTAGCTTC+TGG - chr4_1:44564602-44564621 None:intergenic 40.0%
GCTAAGGAAACTCTTTGTGA+AGG + chr4_1:44564605-44564624 Msa0549430:CDS 40.0%
AGAAGCTGAGATTCAAGAGT+TGG + chr4_1:44564634-44564653 Msa0549430:CDS 40.0%
TCAAATTGCCTCTTCCTACA+AGG + chr4_1:44564672-44564691 Msa0549430:CDS 40.0%
TAAAGGATCCTTGTAGGAAG+AGG - chr4_1:44564683-44564702 None:intergenic 40.0%
! GGCACTTCTTTGGGAATTAT+TGG + chr4_1:44564758-44564777 Msa0549430:CDS 40.0%
!! GCGAAATTTGCTGAGTTTCT+TGG - chr4_1:44564844-44564863 None:intergenic 40.0%
CAGCAAATTTCGCACAACTT+AGG + chr4_1:44564851-44564870 Msa0549430:CDS 40.0%
TTCTTCCTCAACTGTACCAA+TGG + chr4_1:44564935-44564954 Msa0549430:CDS 40.0%
ACCAATGGTCAACTATACGT+TGG + chr4_1:44564950-44564969 Msa0549430:CDS 40.0%
CCAATGGTCAACTATACGTT+GGG + chr4_1:44564951-44564970 Msa0549430:CDS 40.0%
ACATGGCATCAAGTCTCTAT+TGG - chr4_1:44564993-44565012 None:intergenic 40.0%
! ATCAGATTCTGAGGAACACA+TGG - chr4_1:44565010-44565029 None:intergenic 40.0%
TAAATGGTAAAACATCCGGG+AGG - chr4_1:44565383-44565402 None:intergenic 40.0%
TTTGAAGATCAACACCCTCA+GGG - chr4_1:44565619-44565638 None:intergenic 40.0%
!! TTTTGAAGATCAACACCCTC+AGG - chr4_1:44565620-44565639 None:intergenic 40.0%
ATAAAGCTGGCAAGAACTGT+GGG - chr4_1:44565720-44565739 None:intergenic 40.0%
AATAAAGCTGGCAAGAACTG+TGG - chr4_1:44565721-44565740 None:intergenic 40.0%
! ACAGTTCTTGCCAGCTTTAT+TGG + chr4_1:44565720-44565739 Msa0549430:CDS 40.0%
GCTGTAGTATCTGATGTCAA+TGG + chr4_1:44565770-44565789 Msa0549430:CDS 40.0%
GTCAATGGAGAAGCTGTTAT+AGG + chr4_1:44565785-44565804 Msa0549430:CDS 40.0%
TGGAGAAGCTGTTATAGGAA+TGG + chr4_1:44565790-44565809 Msa0549430:CDS 40.0%
CCAACAGTCAAGCATGTATT+AGG - chr4_1:44565901-44565920 None:intergenic 40.0%
CCTAATACATGCTTGACTGT+TGG + chr4_1:44565898-44565917 Msa0549430:intron 40.0%
TTTGTATGTCTCCGATGCTT+GGG + chr4_1:44566077-44566096 Msa0549430:intron 40.0%
ACTGATCAAGGTATGATTGC+TGG + chr4_1:44566191-44566210 Msa0549430:intron 40.0%
TTGAAGTTTCTCTTCCAGCA+GGG + chr4_1:44566269-44566288 Msa0549430:intron 40.0%
!! TTCTAAAACTGATTCCCTGC+TGG - chr4_1:44566286-44566305 None:intergenic 40.0%
! TCCAGATTTTACGCGACTTA+GGG - chr4_1:44566368-44566387 None:intergenic 40.0%
!! TAAACGCTGTACTGTTTTGG+TGG + chr4_1:44566482-44566501 Msa0549430:intron 40.0%
! TCAATGGAACCTGATGATGT+TGG - chr4_1:44566723-44566742 None:intergenic 40.0%
ACATCATCAGGTTCCATTGA+AGG + chr4_1:44566723-44566742 Msa0549430:CDS 40.0%
TCTGCTAAACAACAGCTATC+TGG - chr4_1:44567046-44567065 None:intergenic 40.0%
TTCAGAATGGCCAAGTAAGT+TGG + chr4_1:44567279-44567298 Msa0549430:intron 40.0%
! AATGGCCAAGTAAGTTGGAT+AGG + chr4_1:44567284-44567303 Msa0549430:intron 40.0%
! ATGGCCAAGTAAGTTGGATA+GGG + chr4_1:44567285-44567304 Msa0549430:intron 40.0%
AAGGTACATACCTCAAAGAC+CGG - chr4_1:44567342-44567361 None:intergenic 40.0%
! ACCTTAACGGTGTATTTTCC+GGG + chr4_1:44567357-44567376 Msa0549430:intron 40.0%
! TGTATTTTCCGGGTCAAATG+AGG + chr4_1:44567367-44567386 Msa0549430:intron 40.0%
AGGATCTCACTACTAGCTAT+CGG + chr4_1:44567488-44567507 Msa0549430:intron 40.0%
TCCCATCCTTGGAAAGATTA+AGG - chr4_1:44567646-44567665 None:intergenic 40.0%
TAATCTTTCCAAGGATGGGA+TGG + chr4_1:44567646-44567665 Msa0549430:intron 40.0%
AATCTTTCCAAGGATGGGAT+GGG + chr4_1:44567647-44567666 Msa0549430:intron 40.0%
!! CATGAGTTTTGATGCTTGCA+AGG - chr4_1:44567682-44567701 None:intergenic 40.0%
AAGTTCAAGTGCTATCATCG+AGG + chr4_1:44567717-44567736 Msa0549430:intron 40.0%
TGTGCAACTTGAACTAGGAA+TGG - chr4_1:44567810-44567829 None:intergenic 40.0%
GGAAATGTGCAACTTGAACT+AGG - chr4_1:44567815-44567834 None:intergenic 40.0%
ATCTTTAATGGTTGCAGCTC+TGG + chr4_1:44567888-44567907 Msa0549430:three_prime_UTR 40.0%
TCTTTAATGGTTGCAGCTCT+GGG + chr4_1:44567889-44567908 Msa0549430:three_prime_UTR 40.0%
TCACCTCCGATGATTCTCTT+TGG + chr4_1:44563644-44563663 Msa0549430:CDS 45.0%
GGGTTTCCGAGATGATCAAT+GGG - chr4_1:44563706-44563725 None:intergenic 45.0%
AAGAGTGACCTTGAAGGAAG+GGG - chr4_1:44563731-44563750 None:intergenic 45.0%
GAAGAGTGACCTTGAAGGAA+GGG - chr4_1:44563732-44563751 None:intergenic 45.0%
TGAAGAGTGACCTTGAAGGA+AGG - chr4_1:44563733-44563752 None:intergenic 45.0%
AGTTTGAATCCCAGCTGGAA+CGG + chr4_1:44563837-44563856 Msa0549430:intron 45.0%
CTTACCTCTCGACCTAACTT+TGG + chr4_1:44563877-44563896 Msa0549430:intron 45.0%
CTCTGTCTATCTTAACCCCT+CGG - chr4_1:44563928-44563947 None:intergenic 45.0%
AGTGACACATAGACGAACAC+CGG + chr4_1:44564031-44564050 Msa0549430:intron 45.0%
TCACTATCAGTGGTCATGTC+CGG - chr4_1:44564053-44564072 None:intergenic 45.0%
! GACCACTGATAGTGACACAT+AGG + chr4_1:44564058-44564077 Msa0549430:intron 45.0%
! TGCCTATGTGTCACTATCAG+TGG - chr4_1:44564063-44564082 None:intergenic 45.0%
TACACCGTCCTTATAGTCCA+TGG + chr4_1:44564128-44564147 Msa0549430:intron 45.0%
ACATGTGGTCAGTGTCGTAT+GGG + chr4_1:44564359-44564378 Msa0549430:intron 45.0%
ACTTCAGATTGAAGGTCTGG+GGG - chr4_1:44564403-44564422 None:intergenic 45.0%
CACTTCAGATTGAAGGTCTG+GGG - chr4_1:44564404-44564423 None:intergenic 45.0%
!! TGTGTTTTGTTGTGCTGTGC+AGG + chr4_1:44564469-44564488 Msa0549430:intron 45.0%
ACACGCTTAACAAGAGACCA+AGG - chr4_1:44564533-44564552 None:intergenic 45.0%
TGGAAAGTTATTGGTGAGCC+AGG - chr4_1:44564582-44564601 None:intergenic 45.0%
AGCTGAGATTCAAGAGTTGG+AGG + chr4_1:44564637-44564656 Msa0549430:CDS 45.0%
AAGCGGTAAAGGATCCTTGT+AGG - chr4_1:44564689-44564708 None:intergenic 45.0%
GCCCATTATGAAAGCGGTAA+AGG - chr4_1:44564700-44564719 None:intergenic 45.0%
!! CAAAGAAGTGCCAGATGTGT+CGG - chr4_1:44564750-44564769 None:intergenic 45.0%
GACACATCTGGCACTTCTTT+GGG + chr4_1:44564749-44564768 Msa0549430:CDS 45.0%
AGCAGCCACAAGAACATACT+TGG - chr4_1:44564891-44564910 None:intergenic 45.0%
GAACAACTTCTCACTGTACG+TGG - chr4_1:44564918-44564937 None:intergenic 45.0%
GTTGACCATTGGTACAGTTG+AGG - chr4_1:44564943-44564962 None:intergenic 45.0%
CCCAACGTATAGTTGACCAT+TGG - chr4_1:44564954-44564973 None:intergenic 45.0%
TCATGAGATGGACAGCGAAA+AGG + chr4_1:44565039-44565058 Msa0549430:CDS 45.0%
CTCTTCTAACCACAGTAGCA+TGG - chr4_1:44565074-44565093 None:intergenic 45.0%
CTACTGTGGTTAGAAGAGCA+TGG + chr4_1:44565076-44565095 Msa0549430:CDS 45.0%
CATGGTCACCGTTTACAAAG+TGG + chr4_1:44565094-44565113 Msa0549430:CDS 45.0%
GAACAAAGAGGGGATTCTTC+TGG - chr4_1:44565169-44565188 None:intergenic 45.0%
!! CGCCGTTAGCTTTGTTCATT+CGG + chr4_1:44565245-44565264 Msa0549430:intron 45.0%
!! GCCGTTAGCTTTGTTCATTC+GGG + chr4_1:44565246-44565265 Msa0549430:intron 45.0%
GCCCGAATGAACAAAGCTAA+CGG - chr4_1:44565250-44565269 None:intergenic 45.0%
!!! TCTGTGATCTGCTGCTTTTG+AGG + chr4_1:44565418-44565437 Msa0549430:intron 45.0%
!! GCTTTTGAGGAGAGAACAGT+TGG + chr4_1:44565431-44565450 Msa0549430:intron 45.0%
CTTGAGGTTGTAAGGACATG+CGG - chr4_1:44565676-44565695 None:intergenic 45.0%
CACACATCCTTGAGGTTGTA+AGG - chr4_1:44565684-44565703 None:intergenic 45.0%
CCATTGATCACACATCCTTG+AGG - chr4_1:44565692-44565711 None:intergenic 45.0%
CCTCAAGGATGTGTGATCAA+TGG + chr4_1:44565689-44565708 Msa0549430:CDS 45.0%
!! GTTCTTGCCAGCTTTATTGG+AGG + chr4_1:44565723-44565742 Msa0549430:CDS 45.0%
CTTTGTATGTCTCCGATGCT+TGG + chr4_1:44566076-44566095 Msa0549430:intron 45.0%
GTTGAAGTTTCTCTTCCAGC+AGG + chr4_1:44566268-44566287 Msa0549430:intron 45.0%
TGCAGGATCAGCTCATAACA+AGG - chr4_1:44566344-44566363 None:intergenic 45.0%
ACCCTAAGTCGCGTAAAATC+TGG + chr4_1:44566364-44566383 Msa0549430:intron 45.0%
! CTCCAGATTTTACGCGACTT+AGG - chr4_1:44566369-44566388 None:intergenic 45.0%
TCAACTAAGCCTAGCACCAT+CGG - chr4_1:44566401-44566420 None:intergenic 45.0%
GGTTCCTTTACCTTTGTACC+TGG + chr4_1:44566744-44566763 Msa0549430:CDS 45.0%
CCTTCCAGGTACAAAGGTAA+AGG - chr4_1:44566751-44566770 None:intergenic 45.0%
CCTTTACCTTTGTACCTGGA+AGG + chr4_1:44566748-44566767 Msa0549430:CDS 45.0%
AGCATACCTTCCAGGTACAA+AGG - chr4_1:44566757-44566776 None:intergenic 45.0%
! GAAGGAAAAGCATACCTTCC+AGG - chr4_1:44566765-44566784 None:intergenic 45.0%
AGTCTATGTGTTGGGGTTTG+AGG + chr4_1:44566848-44566867 Msa0549430:intron 45.0%
!! TGTATGTGAGTGTTGAGCCA+TGG + chr4_1:44566954-44566973 Msa0549430:intron 45.0%
!! GTATGTGAGTGTTGAGCCAT+GGG + chr4_1:44566955-44566974 Msa0549430:intron 45.0%
GGAGAAGGTCATAAATGGAG+AGG - chr4_1:44567077-44567096 None:intergenic 45.0%
! TGGCCAAGTAAGTTGGATAG+GGG + chr4_1:44567286-44567305 Msa0549430:intron 45.0%
TCACCCCTATCCAACTTACT+TGG - chr4_1:44567292-44567311 None:intergenic 45.0%
! AGTAAGTTGGATAGGGGTGA+TGG + chr4_1:44567292-44567311 Msa0549430:intron 45.0%
ATGAGATTGTCCGGTCTTTG+AGG + chr4_1:44567329-44567348 Msa0549430:intron 45.0%
ACCCGGAAAATACACCGTTA+AGG - chr4_1:44567361-44567380 None:intergenic 45.0%
ATCTTTCCAAGGATGGGATG+GGG + chr4_1:44567648-44567667 Msa0549430:intron 45.0%
TTCAGATTGGTAGACCCAAG+AGG + chr4_1:44567780-44567799 Msa0549430:intron 45.0%
TCAGATTGGTAGACCCAAGA+GGG + chr4_1:44567781-44567800 Msa0549430:intron 45.0%
TATAGTCTGGCAGCTGAAGA+GGG - chr4_1:44567836-44567855 None:intergenic 45.0%
ATATAGTCTGGCAGCTGAAG+AGG - chr4_1:44567837-44567856 None:intergenic 45.0%
!! AGCTCTGGGTTATGTAGTTC+TGG + chr4_1:44567903-44567922 Msa0549430:three_prime_UTR 45.0%
GGACCAAAGAGAATCATCGG+AGG - chr4_1:44563650-44563669 None:intergenic 50.0%
GGGGTTTCCGAGATGATCAA+TGG - chr4_1:44563707-44563726 None:intergenic 50.0%
TCTTAACCCCTCGGTCACAA+GGG - chr4_1:44563919-44563938 None:intergenic 50.0%
ATCTTAACCCCTCGGTCACA+AGG - chr4_1:44563920-44563939 None:intergenic 50.0%
GACATGTGGTCAGTGTCGTA+TGG + chr4_1:44564358-44564377 Msa0549430:intron 50.0%
GATCACGATACCGACACATC+TGG + chr4_1:44564737-44564756 Msa0549430:CDS 50.0%
CGACACATCTGGCACTTCTT+TGG + chr4_1:44564748-44564767 Msa0549430:CDS 50.0%
GATGGACAGCGAAAAGGTTC+AGG + chr4_1:44565045-44565064 Msa0549430:CDS 50.0%
TTCAGGATGCCATGCTACTG+TGG + chr4_1:44565062-44565081 Msa0549430:CDS 50.0%
TGCTGTAACCAATGGTGTGC+AGG + chr4_1:44565192-44565211 Msa0549430:CDS 50.0%
GTAACCAATGGTGTGCAGGT+AGG + chr4_1:44565196-44565215 Msa0549430:intron 50.0%
AGCTAACGGCGCAAGCATAA+GGG - chr4_1:44565236-44565255 None:intergenic 50.0%
AAGCTAACGGCGCAAGCATA+AGG - chr4_1:44565237-44565256 None:intergenic 50.0%
TCTGCATTGCTTGTCCCTGA+GGG + chr4_1:44565602-44565621 Msa0549430:CDS 50.0%
CGCATGTCCTTACAACCTCA+AGG + chr4_1:44565674-44565693 Msa0549430:CDS 50.0%
TCCAGTGCCTCCAATAAAGC+TGG - chr4_1:44565733-44565752 None:intergenic 50.0%
TTTACGCGACTTAGGGTTGC+AGG - chr4_1:44566361-44566380 None:intergenic 50.0%
! TCTGGAGCTTTGATGTCCGA+TGG + chr4_1:44566382-44566401 Msa0549430:intron 50.0%
CTTTGATGTCCGATGGTGCT+AGG + chr4_1:44566389-44566408 Msa0549430:intron 50.0%
GGTGCTAGGCTTAGTTGAAC+TGG + chr4_1:44566403-44566422 Msa0549430:intron 50.0%
TGCTTGCGAGGTTGAACTTG+AGG - chr4_1:44566459-44566478 None:intergenic 50.0%
CAGCGTTTATGATGCTTGCG+AGG - chr4_1:44566471-44566490 None:intergenic 50.0%
TGTCACCTGGACGCAAAAGT+GGG - chr4_1:44566668-44566687 None:intergenic 50.0%
TTGTCACCTGGACGCAAAAG+TGG - chr4_1:44566669-44566688 None:intergenic 50.0%
! GAACCTGATGATGTTGGCAG+AGG - chr4_1:44566717-44566736 None:intergenic 50.0%
ATGCGATGGGAACCACTTAG+TGG + chr4_1:44567158-44567177 Msa0549430:intron 50.0%
GATGGGAACCACTTAGTGGT+AGG + chr4_1:44567162-44567181 Msa0549430:intron 50.0%
TTGTGGGTCCTACCACTAAG+TGG - chr4_1:44567173-44567192 None:intergenic 50.0%
!! AGTTGGATAGGGGTGATGGA+TGG + chr4_1:44567296-44567315 Msa0549430:intron 50.0%
TTCCGGGTCAAATGAGGTTG+TGG + chr4_1:44567373-44567392 Msa0549430:intron 50.0%
GACCACAACCTCATTTGACC+CGG - chr4_1:44567378-44567397 None:intergenic 50.0%
CAGATTGGTAGACCCAAGAG+GGG + chr4_1:44567782-44567801 Msa0549430:intron 50.0%
CTAGGAATGGATCCCCTCTT+GGG - chr4_1:44567797-44567816 None:intergenic 50.0%
ACTAGGAATGGATCCCCTCT+TGG - chr4_1:44567798-44567817 None:intergenic 50.0%
AAACCCCACCCCTTCCTTCA+AGG + chr4_1:44563720-44563739 Msa0549430:CDS 55.0%
TGACCTTGAAGGAAGGGGTG+GGG - chr4_1:44563726-44563745 None:intergenic 55.0%
GTGACCTTGAAGGAAGGGGT+GGG - chr4_1:44563727-44563746 None:intergenic 55.0%
AGTGACCTTGAAGGAAGGGG+TGG - chr4_1:44563728-44563747 None:intergenic 55.0%
ATCCCAGCTGGAACGGTCTT+TGG + chr4_1:44563844-44563863 Msa0549430:intron 55.0%
GACCAAAGACCGTTCCAGCT+GGG - chr4_1:44563849-44563868 None:intergenic 55.0%
TGACCAAAGACCGTTCCAGC+TGG - chr4_1:44563850-44563869 None:intergenic 55.0%
AGTCCTTTCCCTTGTGACCG+AGG + chr4_1:44563908-44563927 Msa0549430:intron 55.0%
GTCCTTTCCCTTGTGACCGA+GGG + chr4_1:44563909-44563928 Msa0549430:intron 55.0%
TCCTTTCCCTTGTGACCGAG+GGG + chr4_1:44563910-44563929 Msa0549430:intron 55.0%
CTCTCCTACCTGCACACCAT+TGG - chr4_1:44565203-44565222 None:intergenic 55.0%
GCTAACGGCGCAAGCATAAG+GGG - chr4_1:44565235-44565254 None:intergenic 55.0%
CTCAGGGACAAGCAATGCAG+AGG - chr4_1:44565603-44565622 None:intergenic 55.0%
CTCTGCATTGCTTGTCCCTG+AGG + chr4_1:44565601-44565620 Msa0549430:CDS 55.0%
!! GCCAGCTTTATTGGAGGCAC+TGG + chr4_1:44565729-44565748 Msa0549430:CDS 55.0%
!! CAGTACCCACTTTTGCGTCC+AGG + chr4_1:44566660-44566679 Msa0549430:intron 55.0%
TCGCCTCTGCCAACATCATC+AGG + chr4_1:44566711-44566730 Msa0549430:CDS 55.0%
!! TGTGAGTGTTGAGCCATGGG+TGG + chr4_1:44566958-44566977 Msa0549430:intron 55.0%
!! GTGAGTGTTGAGCCATGGGT+GGG + chr4_1:44566959-44566978 Msa0549430:intron 55.0%
!! TGAGTGTTGAGCCATGGGTG+GGG + chr4_1:44566960-44566979 Msa0549430:intron 55.0%
ATCTTCAACACCCCCACCCA+TGG - chr4_1:44566974-44566993 None:intergenic 55.0%
!! GGTGGGGGTGTTGAAGATAC+CGG + chr4_1:44566976-44566995 Msa0549430:intron 55.0%
ACCCCTCGGTCACAAGGGAA+AGG - chr4_1:44563914-44563933 None:intergenic 60.0%
!! GAGTGTTGAGCCATGGGTGG+GGG + chr4_1:44566961-44566980 Msa0549430:intron 60.0%
TCCAAGGATGGGATGGGGTG+TGG + chr4_1:44567653-44567672 Msa0549430:intron 60.0%
TCCACACCCCATCCCATCCT+TGG - chr4_1:44567657-44567676 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 44563414 44568194 44563414 ID=Msa0549430;Name=Msa0549430
chr4_1 mRNA 44563414 44568194 44563414 ID=Msa0549430-mRNA-1;Parent=Msa0549430;Name=Msa0549430-mRNA-1;_AED=0.13;_eAED=0.13;_QI=124|1|1|1|1|1|5|331|443
chr4_1 exon 44563414 44563741 44563414 ID=Msa0549430-mRNA-1:exon:11612;Parent=Msa0549430-mRNA-1
chr4_1 exon 44564491 44565213 44564491 ID=Msa0549430-mRNA-1:exon:11613;Parent=Msa0549430-mRNA-1
chr4_1 exon 44565593 44565811 44565593 ID=Msa0549430-mRNA-1:exon:11614;Parent=Msa0549430-mRNA-1
chr4_1 exon 44566663 44566769 44566663 ID=Msa0549430-mRNA-1:exon:11615;Parent=Msa0549430-mRNA-1
chr4_1 exon 44567785 44568194 44567785 ID=Msa0549430-mRNA-1:exon:11616;Parent=Msa0549430-mRNA-1
chr4_1 five_prime_UTR 44563414 44563537 44563414 ID=Msa0549430-mRNA-1:five_prime_utr;Parent=Msa0549430-mRNA-1
chr4_1 CDS 44563538 44563741 44563538 ID=Msa0549430-mRNA-1:cds;Parent=Msa0549430-mRNA-1
chr4_1 CDS 44564491 44565213 44564491 ID=Msa0549430-mRNA-1:cds;Parent=Msa0549430-mRNA-1
chr4_1 CDS 44565593 44565811 44565593 ID=Msa0549430-mRNA-1:cds;Parent=Msa0549430-mRNA-1
chr4_1 CDS 44566663 44566769 44566663 ID=Msa0549430-mRNA-1:cds;Parent=Msa0549430-mRNA-1
chr4_1 CDS 44567785 44567863 44567785 ID=Msa0549430-mRNA-1:cds;Parent=Msa0549430-mRNA-1
chr4_1 three_prime_UTR 44567864 44568194 44567864 ID=Msa0549430-mRNA-1:three_prime_utr;Parent=Msa0549430-mRNA-1
Gene Sequence

>Msa0549430

ATGGATTTGGAATCAGTTGGAGATTTAGCGATTCATGAAATTATGGAAAATCTTAAACCCGAAGACATTGCCAGAATTTCATGTGTCAATAACAGGTTCAAATCTTTCACCTCCGATGATTCTCTTTGGTCCAAAATCTGCTTCCGTGAACTTTCTCTCACTCAACCCATTGATCATCTCGGAAACCCCACCCCTTCCTTCAAGGAAGCTTATCAAACTTGGAGAGAAGCTTTTGTTATGTATCCTTGGTCTCTTGTTAAGCGTGTCAAAAGGTGTTGGGACAATATAAAAACCTGGCTCACCAATAACTTTCCAGAAGCTAAGGAAACTCTTTGTGAAGGTGCGTCAGAAGCTGAGATTCAAGAGTTGGAGGATGTCTTAAATGTCAAATTGCCTCTTCCTACAAGGATCCTTTACCGCTTTCATAATGGGCAAGAAATTGAAAAACAAGATCACGATACCGACACATCTGGCACTTCTTTGGGAATTATTGGTGGTTACTCCTTCTATGATCATTTCGTGAATGTTTATTTATTACCTATAAGTCAGGTAATCCAAGAAACTCAGCAAATTTCGCACAACTTAGGATTTTTAAGAAGATCCAAGTATGTTCTTGTGGCTGCTTCATCCACGTACAGTGAGAAGTTGTTCTTCCTCAACTGTACCAATGGTCAACTATACGTTGGGACCAGAAATCTTCTTACCAATAGAGACTTGATGCCATGTGTTCCTCAGAATCTGATTAGTTTGCATCATGAGATGGACAGCGAAAAGGTTCAGGATGCCATGCTACTGTGGTTAGAAGAGCATGGTCACCGTTTACAAAGTGGTTTTATCAAACTGCTTGAAGAAGGAAATGCCAAAAGCATTAGTCTTTTTCCAGAAGAATCCCCTCTTTGTTCAATTGCTGTAACCAATGGTGTGCAGATTCGCGCCTCTGCATTGCTTGTCCCTGAGGGTGTTGATCTTCAAAATGACCGTGAGAAGTATTTATTTTCTTATTCAATCCGCATGTCCTTACAACCTCAAGGATGTGTGATCAATGGAATGTCCCACAGTTCTTGCCAGCTTTATTGGAGGCACTGGATCATCCGTGCTAATGATGCTGTAGTATCTGATGTCAATGGAGAAGCTGTTATAGGAATGTACCCACTTTTGCGTCCAGGTGACAAAGAATTTGTTTATCAGAGTTGCTCGCCTCTGCCAACATCATCAGGTTCCATTGAAGGTTCCTTTACCTTTGTACCTGGAAGATTGGTAGACCCAAGAGGGGATCCATTCCTAGTTCAAGTTGCACATTTCCCTCTTCAGCTGCCAGACTATATTTTCTGA
Protein sequence

>Msa0549430

MDLESVGDLAIHEIMENLKPEDIARISCVNNRFKSFTSDDSLWSKICFRELSLTQPIDHLGNPTPSFKEAYQTWREAFVMYPWSLVKRVKRCWDNIKTWLTNNFPEAKETLCEGASEAEIQELEDVLNVKLPLPTRILYRFHNGQEIEKQDHDTDTSGTSLGIIGGYSFYDHFVNVYLLPISQVIQETQQISHNLGFLRRSKYVLVAASSTYSEKLFFLNCTNGQLYVGTRNLLTNRDLMPCVPQNLISLHHEMDSEKVQDAMLLWLEEHGHRLQSGFIKLLEEGNAKSISLFPEESPLCSIAVTNGVQIRASALLVPEGVDLQNDREKYLFSYSIRMSLQPQGCVINGMSHSSCQLYWRHWIIRANDAVVSDVNGEAVIGMYPLLRPGDKEFVYQSCSPLPTSSGSIEGSFTFVPGRLVDPRGDPFLVQVAHFPLQLPDYIF*