AlfalfaGEDB | Msa0549430

M. sativa cultivar zhongmu-4 / Msa0549430

KEGG: K10290
GO: GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234
PFAM: PF09346.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0549430	XP_003606823.1	97.065	443	13	0	1	443	1	443	0.0	897

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0549430	sp\|Q9LND7\|SKI16_ARATH	56.081	444	186	3	1	443	1	436	0.0	534

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0549430	G7JEW2	97.065	443	13	0	1	443	1	443	0.0	897

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0549430	Msa0645730	0.880910	3.719710e-70	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0549430	MtrunA17_Chr4g0033681	97.065	443	13	0	1	443	1	443	0.0	897

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0549430	AT1G06110.1	56.081	444	186	3	1	443	1	436	0.0	534
Msa0549430	AT1G06110.2	54.450	382	165	3	1	381	1	374	3.43e-155	444
Msa0549430	AT1G06110.3	53.503	314	137	3	1	313	1	306	1.54e-118	348

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Find 143 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCCACCCCTTCCTTCA+AGG	0.450980	4_1:+44563720	Msa0549430:CDS
AAAGGTAAAGGAACCTTCAA+TGG	0.442463	4_1:-44566736	None:intergenic
AAGAAAATAAATACTTCTCA+CGG	0.587786	4_1:-44565643	None:intergenic
AAGAGTGACCTTGAAGGAAG+GGG	0.587315	4_1:-44563728	None:intergenic
AAGATCCAAGTATGTTCTTG+TGG	0.582780	4_1:+44564883	Msa0549430:CDS
AAGATGGATTTGGAATCAGT+TGG	0.532078	4_1:+44563535	Msa0549430:exon
AAGCGGTAAAGGATCCTTGT+AGG	0.488371	4_1:-44564686	None:intergenic
AAGTTCACGGAAGCAGATTT+TGG	0.254589	4_1:-44563668	None:intergenic
AATAAAGCTGGCAAGAACTG+TGG	0.601208	4_1:-44565718	None:intergenic
ACACGCTTAACAAGAGACCA+AGG	0.679161	4_1:-44564530	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAATTTGGAGAAAGAAGA+TGG	+	chr4_1:44563519-44563538	Msa0549430:exon	30.0%
GTTATTGACACATGAAATTC+TGG	-	chr4_1:44563611-44563630	None:intergenic	30.0%
GAATTTCATGTGTCAATAAC+AGG	+	chr4_1:44563611-44563630	Msa0549430:CDS	30.0%
GACTCTAATAATCCAAAGTT+AGG	-	chr4_1:44563892-44563911	None:intergenic	30.0%
ATAGGCACCAATAACAATTT+GGG	+	chr4_1:44564076-44564095	Msa0549430:intron	30.0%
CAAACATTCATGAACCAAAA+TGG	-	chr4_1:44564107-44564126	None:intergenic	30.0%
ACTAACTAAATAGACACTTG+AGG	-	chr4_1:44564177-44564196	None:intergenic	30.0%
ATTCACGAAATGATCATAGA+AGG	-	chr4_1:44564792-44564811	None:intergenic	30.0%
TCTATTGGTAAGAAGATTTC+TGG	-	chr4_1:44564978-44564997	None:intergenic	30.0%
TTTATCAAACTGCTTGAAGA+AGG	+	chr4_1:44565118-44565137	Msa0549430:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	44563414	44568194	44563414	ID=Msa0549430;Name=Msa0549430
chr4_1	mRNA	44563414	44568194	44563414	ID=Msa0549430-mRNA-1;Parent=Msa0549430;Name=Msa0549430-mRNA-1;_AED=0.13;_eAED=0.13;_QI=124\|1\|1\|1\|1\|1\|5\|331\|443
chr4_1	exon	44563414	44563741	44563414	ID=Msa0549430-mRNA-1:exon:11612;Parent=Msa0549430-mRNA-1
chr4_1	exon	44564491	44565213	44564491	ID=Msa0549430-mRNA-1:exon:11613;Parent=Msa0549430-mRNA-1
chr4_1	exon	44565593	44565811	44565593	ID=Msa0549430-mRNA-1:exon:11614;Parent=Msa0549430-mRNA-1
chr4_1	exon	44566663	44566769	44566663	ID=Msa0549430-mRNA-1:exon:11615;Parent=Msa0549430-mRNA-1
chr4_1	exon	44567785	44568194	44567785	ID=Msa0549430-mRNA-1:exon:11616;Parent=Msa0549430-mRNA-1
chr4_1	five_prime_UTR	44563414	44563537	44563414	ID=Msa0549430-mRNA-1:five_prime_utr;Parent=Msa0549430-mRNA-1
chr4_1	CDS	44563538	44563741	44563538	ID=Msa0549430-mRNA-1:cds;Parent=Msa0549430-mRNA-1
chr4_1	CDS	44564491	44565213	44564491	ID=Msa0549430-mRNA-1:cds;Parent=Msa0549430-mRNA-1
chr4_1	CDS	44565593	44565811	44565593	ID=Msa0549430-mRNA-1:cds;Parent=Msa0549430-mRNA-1
chr4_1	CDS	44566663	44566769	44566663	ID=Msa0549430-mRNA-1:cds;Parent=Msa0549430-mRNA-1
chr4_1	CDS	44567785	44567863	44567785	ID=Msa0549430-mRNA-1:cds;Parent=Msa0549430-mRNA-1
chr4_1	three_prime_UTR	44567864	44568194	44567864	ID=Msa0549430-mRNA-1:three_prime_utr;Parent=Msa0549430-mRNA-1

Gene Sequence

>Msa0549430

ATGGATTTGGAATCAGTTGGAGATTTAGCGATTCATGAAATTATGGAAAATCTTAAACCCGAAGACATTGCCAGAATTTCATGTGTCAATAACAGGTTCAAATCTTTCACCTCCGATGATTCTCTTTGGTCCAAAATCTGCTTCCGTGAACTTTCTCTCACTCAACCCATTGATCATCTCGGAAACCCCACCCCTTCCTTCAAGGAAGCTTATCAAACTTGGAGAGAAGCTTTTGTTATGTATCCTTGGTCTCTTGTTAAGCGTGTCAAAAGGTGTTGGGACAATATAAAAACCTGGCTCACCAATAACTTTCCAGAAGCTAAGGAAACTCTTTGTGAAGGTGCGTCAGAAGCTGAGATTCAAGAGTTGGAGGATGTCTTAAATGTCAAATTGCCTCTTCCTACAAGGATCCTTTACCGCTTTCATAATGGGCAAGAAATTGAAAAACAAGATCACGATACCGACACATCTGGCACTTCTTTGGGAATTATTGGTGGTTACTCCTTCTATGATCATTTCGTGAATGTTTATTTATTACCTATAAGTCAGGTAATCCAAGAAACTCAGCAAATTTCGCACAACTTAGGATTTTTAAGAAGATCCAAGTATGTTCTTGTGGCTGCTTCATCCACGTACAGTGAGAAGTTGTTCTTCCTCAACTGTACCAATGGTCAACTATACGTTGGGACCAGAAATCTTCTTACCAATAGAGACTTGATGCCATGTGTTCCTCAGAATCTGATTAGTTTGCATCATGAGATGGACAGCGAAAAGGTTCAGGATGCCATGCTACTGTGGTTAGAAGAGCATGGTCACCGTTTACAAAGTGGTTTTATCAAACTGCTTGAAGAAGGAAATGCCAAAAGCATTAGTCTTTTTCCAGAAGAATCCCCTCTTTGTTCAATTGCTGTAACCAATGGTGTGCAGATTCGCGCCTCTGCATTGCTTGTCCCTGAGGGTGTTGATCTTCAAAATGACCGTGAGAAGTATTTATTTTCTTATTCAATCCGCATGTCCTTACAACCTCAAGGATGTGTGATCAATGGAATGTCCCACAGTTCTTGCCAGCTTTATTGGAGGCACTGGATCATCCGTGCTAATGATGCTGTAGTATCTGATGTCAATGGAGAAGCTGTTATAGGAATGTACCCACTTTTGCGTCCAGGTGACAAAGAATTTGTTTATCAGAGTTGCTCGCCTCTGCCAACATCATCAGGTTCCATTGAAGGTTCCTTTACCTTTGTACCTGGAAGATTGGTAGACCCAAGAGGGGATCCATTCCTAGTTCAAGTTGCACATTTCCCTCTTCAGCTGCCAGACTATATTTTCTGA

Protein sequence

>Msa0549430

MDLESVGDLAIHEIMENLKPEDIARISCVNNRFKSFTSDDSLWSKICFRELSLTQPIDHLGNPTPSFKEAYQTWREAFVMYPWSLVKRVKRCWDNIKTWLTNNFPEAKETLCEGASEAEIQELEDVLNVKLPLPTRILYRFHNGQEIEKQDHDTDTSGTSLGIIGGYSFYDHFVNVYLLPISQVIQETQQISHNLGFLRRSKYVLVAASSTYSEKLFFLNCTNGQLYVGTRNLLTNRDLMPCVPQNLISLHHEMDSEKVQDAMLLWLEEHGHRLQSGFIKLLEEGNAKSISLFPEESPLCSIAVTNGVQIRASALLVPEGVDLQNDREKYLFSYSIRMSLQPQGCVINGMSHSSCQLYWRHWIIRANDAVVSDVNGEAVIGMYPLLRPGDKEFVYQSCSPLPTSSGSIEGSFTFVPGRLVDPRGDPFLVQVAHFPLQLPDYIF*