AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550940 MtrunA17_Chr4g0035891 96.959 296 8 1 1 296 1 295 0.0 596
Msa0550940 MtrunA17_Chr3g0145121 53.292 319 107 8 1 296 1 300 1.42e-97 289
Msa0550940 MtrunA17_Chr8g0372291 39.159 309 138 10 1 281 1 287 9.13e-52 171
Msa0550940 MtrunA17_Chr5g0404981 40.282 355 137 11 1 296 51 389 2.70e-50 171
Msa0550940 MtrunA17_Chr3g0140331 38.406 276 120 9 36 281 67 322 4.47e-45 156
Msa0550940 MtrunA17_Chr8g0340401 38.869 283 113 9 39 281 33 295 2.26e-43 151
Msa0550940 MtrunA17_Chr1g0146231 34.921 315 141 12 15 281 5 303 1.09e-42 149
Msa0550940 MtrunA17_Chr1g0199671 75.714 70 17 0 207 276 237 306 1.33e-34 128
Msa0550940 MtrunA17_Chr6g0461591 81.538 65 12 0 212 276 192 256 2.08e-34 125
Msa0550940 MtrunA17_Chr7g0253101 80.000 65 13 0 212 276 188 252 2.24e-33 123
Msa0550940 MtrunA17_Chr1g0213161 67.532 77 25 0 212 288 152 228 2.84e-33 122
Msa0550940 MtrunA17_Chr1g0169431 76.471 68 16 0 212 279 172 239 8.18e-33 121
Msa0550940 MtrunA17_Chr2g0326771 62.791 86 30 1 191 276 197 280 2.54e-32 121
Msa0550940 MtrunA17_Chr4g0028961 73.134 67 18 0 212 278 232 298 3.70e-32 121
Msa0550940 MtrunA17_Chr5g0395391 68.571 70 22 0 212 281 270 339 1.40e-29 114
Msa0550940 MtrunA17_Chr5g0395391 59.036 83 28 1 199 275 149 231 2.99e-26 105
Msa0550940 MtrunA17_Chr7g0232671 57.143 63 27 0 211 273 186 248 1.72e-20 88.6
Msa0550940 MtrunA17_Chr7g0232701 53.968 63 29 0 211 273 72 134 7.17e-19 81.3
Msa0550940 MtrunA17_Chr7g0232681 31.868 182 107 5 105 273 16 193 4.94e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550940 AT4G36240.1 47.082 257 90 10 40 282 10 234 1.40e-56 182
Msa0550940 AT5G66320.2 35.838 346 139 10 8 291 5 329 2.41e-51 172
Msa0550940 AT5G66320.1 35.838 346 139 10 8 291 5 329 2.41e-51 172
Msa0550940 AT4G34680.1 41.034 290 114 11 6 283 7 251 2.03e-49 165
Msa0550940 AT4G34680.2 41.034 290 114 11 6 283 7 251 2.03e-49 165
Msa0550940 AT5G25830.1 38.047 297 108 12 40 281 13 288 1.49e-44 154
Msa0550940 AT3G60530.1 47.778 180 73 5 112 283 63 229 2.33e-43 149
Msa0550940 AT4G32890.1 36.331 278 115 11 39 281 16 266 4.85e-43 150
Msa0550940 AT2G45050.1 44.845 194 73 4 112 281 65 248 5.01e-43 148
Msa0550940 AT3G51080.1 69.231 91 22 2 212 296 221 311 2.52e-38 137
Msa0550940 AT3G24050.1 64.706 85 29 1 197 280 178 262 1.05e-33 124
Msa0550940 AT3G54810.1 75.000 68 17 0 212 279 229 296 3.82e-33 124
Msa0550940 AT3G54810.2 75.000 68 17 0 212 279 229 296 3.82e-33 124
Msa0550940 AT1G08010.2 72.464 69 19 0 212 280 220 288 3.59e-32 121
Msa0550940 AT1G08010.1 72.464 69 19 0 212 280 220 288 3.59e-32 121
Msa0550940 AT1G08010.3 72.464 69 19 0 212 280 220 288 3.59e-32 121
Msa0550940 AT1G08000.2 71.014 69 20 0 212 280 218 286 2.77e-30 116
Msa0550940 AT1G08000.1 71.014 69 20 0 212 280 218 286 2.77e-30 116
Msa0550940 AT3G45170.1 60.274 73 29 0 214 286 117 189 9.60e-27 104
Msa0550940 AT2G28340.1 63.077 65 24 0 214 278 193 257 1.64e-24 100

Find 120 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAACTGCACTGAGAAAA+TGG 0.161694 4_1:-46529307 None:intergenic
CTTCTTGTCTTGGTTGTTCT+AGG 0.195513 4_1:-46528738 None:intergenic
AGCCCCACCCGTTTGGGCTT+CGG 0.226880 4_1:-46528826 None:intergenic
GCCCCACCCGTTTGGGCTTC+GGG 0.232140 4_1:-46528825 None:intergenic
GGCCGATGATGTTGCGGATT+TGG 0.241470 4_1:+46528581 Msa0550940:intron
TAAATACCAACTTGAATAAA+TGG 0.261771 4_1:-46529400 None:intergenic
GAACAGCCACCGTAAGGTTT+TGG 0.270098 4_1:+46529022 Msa0550940:CDS
GAGGTGGATGAACCGGTTTC+CGG 0.310815 4_1:+46529062 Msa0550940:CDS
GGTTCGGCCCGGGCCTGAAC+TGG 0.312951 4_1:-46528657 None:intergenic
CGAAACAAGCGTTGAGGTAT+TGG 0.323623 4_1:-46527724 None:intergenic
TGCCGGTGGTTTAGCAGTTC+CGG 0.331211 4_1:+46528303 Msa0550940:CDS
GAAACTGAGCCCCACCCGTT+TGG 0.331959 4_1:-46528833 None:intergenic
TCTTTGCTGAAAAGAGTATA+GGG 0.337151 4_1:-46528788 None:intergenic
CAAGAGAGTTTCCTTTGGTT+TGG 0.341415 4_1:-46527764 None:intergenic
TCTCTTCACAAATTGTTTGT+TGG 0.346081 4_1:-46528024 None:intergenic
AAACTGAGCCCCACCCGTTT+GGG 0.350163 4_1:-46528832 None:intergenic
CTTCTTCTTCTTCCTCCTCC+TGG 0.352825 4_1:-46528165 None:intergenic
GTGAACCAACTGGTCTGAAC+CGG 0.355460 4_1:+46529178 Msa0550940:three_prime_UTR
TAGTGAAAATAAAGAAATAA+TGG 0.364355 4_1:+46527674 Msa0550940:five_prime_UTR
CTCTCTATTGTATCCAGTTC+AGG 0.364580 4_1:+46528644 Msa0550940:CDS
AACCGGTTTCCGGTCTGAAC+CGG 0.370991 4_1:+46529072 Msa0550940:CDS
GCATTGGTTGGGCCCGGTCT+AGG 0.372639 4_1:-46528684 None:intergenic
ACAGTTGGGCCTTCTTGTCT+TGG 0.379924 4_1:-46528748 None:intergenic
GTTGGGCCCGGTCTAGGTTC+CGG 0.399228 4_1:-46528678 None:intergenic
TAAGGCAGGTAACGGAGATT+AGG 0.403308 4_1:+46529254 Msa0550940:three_prime_UTR
TAGATTAGCTGATTAGATAC+TGG 0.405597 4_1:+46529156 Msa0550940:three_prime_UTR
AGTTCAGGCCCGGGCCGAAC+CGG 0.407384 4_1:+46528659 Msa0550940:CDS
GTCTAGGTTCCGGTTCGGCC+CGG 0.414385 4_1:-46528668 None:intergenic
GGCCGAACCGGAACCTAGAC+CGG 0.414860 4_1:+46528671 Msa0550940:CDS
TTCTTTGCTGAAAAGAGTAT+AGG 0.416988 4_1:-46528789 None:intergenic
AACGCAAACAACGTTGTTGT+CGG 0.417578 4_1:+46528058 Msa0550940:CDS
TTTGGAAATGAGGCGGAGGA+AGG 0.432787 4_1:+46529040 Msa0550940:CDS
TATGTAACGCTTGTGGTGTT+CGG 0.433641 4_1:+46528928 Msa0550940:CDS
AGAAATAGTCAATGATTTAG+TGG 0.433775 4_1:+46529212 Msa0550940:three_prime_UTR
GAATTTCAACATGGTTCTGT+TGG 0.444517 4_1:+46528124 Msa0550940:CDS
TATTGTATCCAGTTCAGGCC+CGG 0.446736 4_1:+46528649 Msa0550940:CDS
GGAATGGGTGTCTCACTTTG+TGG 0.449579 4_1:+46528602 Msa0550940:CDS
AATGAGGCGGAGGAAGGAGG+TGG 0.451531 4_1:+46529046 Msa0550940:CDS
ATCCGGTTCAGACCGGAAAC+CGG 0.452815 4_1:-46529074 None:intergenic
GAGGAAGGAGGTGGATGAAC+CGG 0.452883 4_1:+46529055 Msa0550940:CDS
TCTAGGTTCCGGTTCGGCCC+GGG 0.468440 4_1:-46528667 None:intergenic
ATAGATTCTGTCCTCAAGCT+TGG 0.468461 4_1:-46527998 None:intergenic
GCCTCATTTCCAAAACCTTA+CGG 0.469337 4_1:-46529031 None:intergenic
TTAGATACTGGTGAACCAAC+TGG 0.470608 4_1:+46529168 Msa0550940:three_prime_UTR
ATTAACTGCACTGAGAAAAT+GGG 0.471694 4_1:-46529306 None:intergenic
AACCGCAAGAGAGTTTCCTT+TGG 0.471900 4_1:-46527769 None:intergenic
TTCTGCGGATTATAGAGAGC+TGG 0.472534 4_1:-46528713 None:intergenic
TCTTCGCCATTTATTCAAGT+TGG 0.475612 4_1:+46529394 Msa0550940:three_prime_UTR
CGGTCTGAACCGGATTCAAA+TGG 0.475660 4_1:+46529082 Msa0550940:CDS
ATGATGTTGCGGATTTGGAA+TGG 0.479723 4_1:+46528586 Msa0550940:CDS
AACTCGTGACCATTTGAATC+CGG 0.481371 4_1:-46529091 None:intergenic
CAGTGGAGAGCTGGTCCGCT+TGG 0.483307 4_1:+46528894 Msa0550940:CDS
GGAGTCAGACTCGCCGTCTC+CGG 0.485968 4_1:-46528275 None:intergenic
TGTGGTGTTCGGTTTAAGTC+CGG 0.492368 4_1:+46528939 Msa0550940:CDS
GGATACAATAGAGAGAGTTC+TGG 0.493646 4_1:-46528636 None:intergenic
GCCCGAAGCCCAAACGGGTG+GGG 0.493923 4_1:+46528824 Msa0550940:CDS
AAAATCCACACGTTACAGTT+GGG 0.498357 4_1:-46528762 None:intergenic
TGATGAAGAGTGACAAAGAG+AGG 0.498438 4_1:-46527793 None:intergenic
TGATGTTGCGGATTTGGAAT+GGG 0.501793 4_1:+46528587 Msa0550940:CDS
GGAAATGAGGCGGAGGAAGG+AGG 0.505698 4_1:+46529043 Msa0550940:CDS
GCCCGGTCTAGGTTCCGGTT+CGG 0.510484 4_1:-46528673 None:intergenic
AGACTCGCCGTCTCCGGCAC+CGG 0.510633 4_1:-46528269 None:intergenic
AGCTGGGAATAAGCATTGGT+TGG 0.510903 4_1:-46528696 None:intergenic
TTCTCAGGCCGATGATGTTG+CGG 0.519029 4_1:+46528575 Msa0550940:intron
GGTTTGGAAGCACTGAAATG+AGG 0.521338 4_1:-46527748 None:intergenic
AAAAGAAATTGATGTTTACC+AGG 0.530934 4_1:+46528147 Msa0550940:CDS
GCTGGGAATAAGCATTGGTT+GGG 0.531676 4_1:-46528695 None:intergenic
AAAACGCCACAGTGGAGAGC+TGG 0.532352 4_1:+46528885 Msa0550940:CDS
AATTGATGTTTACCAGGAGG+AGG 0.533216 4_1:+46528153 Msa0550940:CDS
GTTTGGAAGCACTGAAATGA+GGG 0.537345 4_1:-46527747 None:intergenic
TGCATGCAGGTCTATACTCC+GGG 0.538197 4_1:-46528971 None:intergenic
TTCCAAATCCGCAACATCAT+CGG 0.540001 4_1:-46528583 None:intergenic
AGCCCGAAGCCCAAACGGGT+GGG 0.541657 4_1:+46528823 Msa0550940:CDS
GAATAAGCATTGGTTGGGCC+CGG 0.542060 4_1:-46528690 None:intergenic
GTGATAGTGGTAACTTGGTA+AGG 0.542565 4_1:+46529132 Msa0550940:three_prime_UTR
ATTGTATCCAGTTCAGGCCC+GGG 0.543140 4_1:+46528650 Msa0550940:CDS
AGAACGTGATAGTGGTAACT+TGG 0.546604 4_1:+46529127 Msa0550940:three_prime_UTR
AGAGAGCTGGGAATAAGCAT+TGG 0.549150 4_1:-46528700 None:intergenic
TGAACCAACTGGTCTGAACC+GGG 0.550403 4_1:+46529179 Msa0550940:three_prime_UTR
GCCGAACCGGAACCTAGACC+GGG 0.552879 4_1:+46528672 Msa0550940:CDS
TCTGCGGATTATAGAGAGCT+GGG 0.553907 4_1:-46528712 None:intergenic
ATTTGTTGAGAACGTGATAG+TGG 0.554949 4_1:+46529119 Msa0550940:three_prime_UTR
CATTTGAATCCGGTTCAGAC+CGG 0.555998 4_1:-46529081 None:intergenic
GCTGTTCGAATGAATTTCAC+CGG 0.556294 4_1:-46529006 None:intergenic
AAGCCCGAAGCCCAAACGGG+TGG 0.557944 4_1:+46528822 Msa0550940:CDS
TTTCAGTGCTTCCAAACCAA+AGG 0.559065 4_1:+46527753 Msa0550940:five_prime_UTR
GAAAATAAAGAAATAATGGA+AGG 0.567842 4_1:+46527678 Msa0550940:five_prime_UTR
TCCGGCACCGGAAAATGTTG+TGG 0.574032 4_1:-46528257 None:intergenic
TCATTCGAACAGCCACCGTA+AGG 0.576237 4_1:+46529016 Msa0550940:CDS
AGTGACTAGTCAGCTAAGGC+AGG 0.578356 4_1:+46529240 Msa0550940:three_prime_UTR
CTGCATGCAGGTCTATACTC+CGG 0.578551 4_1:-46528972 None:intergenic
AGTGAGTGACTAGTCAGCTA+AGG 0.581255 4_1:+46529236 Msa0550940:three_prime_UTR
CTAGAACAACCAAGACAAGA+AGG 0.581886 4_1:+46528739 Msa0550940:CDS
ACCATGTTGAAATTCACCGT+TGG 0.582797 4_1:-46528116 None:intergenic
GTGCATCACTCTCTATGAGA+AGG 0.588448 4_1:+46527592 Msa0550940:five_prime_UTR
CACCGGAACTGCTAAACCAC+CGG 0.593758 4_1:-46528305 None:intergenic
ATACTCCGGGAAAAGCCGAC+CGG 0.594686 4_1:-46528958 None:intergenic
AAAACCCGGTTCAGACCAGT+TGG 0.597362 4_1:-46529183 None:intergenic
TGGTTGTTCTAGGCTTTCTG+CGG 0.603627 4_1:-46528728 None:intergenic
GAAAACGTCGGACTGCATGC+AGG 0.603890 4_1:-46528984 None:intergenic
TAGTCAGCTAAGGCAGGTAA+CGG 0.605189 4_1:+46529246 Msa0550940:three_prime_UTR
AACCAAAGGAAACTCTCTTG+CGG 0.609093 4_1:+46527767 Msa0550940:five_prime_UTR
AATTATTCAACAAAGTTCAG+CGG 0.611078 4_1:+46529458 Msa0550940:three_prime_UTR
AAACATGGAAGTTGTTGTAG+CGG 0.614309 4_1:+46527964 Msa0550940:exon
TCGTTCATGTTCAGAACCTG+AGG 0.628083 4_1:-46528209 None:intergenic
TTCATGTTCAGAACCTGAGG+TGG 0.629594 4_1:-46528206 None:intergenic
TACTACTATAGTATAAGTCT+AGG 0.631004 4_1:+46529347 Msa0550940:three_prime_UTR
GTGTTCGGTTTAAGTCCGGT+CGG 0.631814 4_1:+46528943 Msa0550940:CDS
AAATTTAGTAGTAGTACTAG+TGG 0.641874 4_1:+46527616 Msa0550940:five_prime_UTR
TCCAACGGTGAATTTCAACA+TGG 0.652718 4_1:+46528115 Msa0550940:CDS
GAAGGCCCAACTGTAACGTG+TGG 0.654146 4_1:+46528757 Msa0550940:CDS
AAAACACTATGTAACGCTTG+TGG 0.656575 4_1:+46528921 Msa0550940:CDS
TGAATTTCACCGGAAAACGT+CGG 0.667076 4_1:-46528996 None:intergenic
AGAAATTGATGTTTACCAGG+AGG 0.667546 4_1:+46528150 Msa0550940:CDS
AAGCGTTGAAACCAAGCTTG+AGG 0.681951 4_1:+46527987 Msa0550940:CDS
TCATTTCCAAAACCTTACGG+TGG 0.687073 4_1:-46529028 None:intergenic
AGCGGACCAGCTCTCCACTG+TGG 0.697012 4_1:-46528891 None:intergenic
TGAGGGCGAAACAAGCGTTG+AGG 0.700340 4_1:-46527730 None:intergenic
ATGTTCAGAAAACGCCACAG+TGG 0.715931 4_1:+46528877 Msa0550940:CDS
GTGGGGCTCAGTTTCAACGA+CGG 0.724625 4_1:+46528841 Msa0550940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTGAAAATAAAGAAATAA+TGG + chr4_1:46527674-46527693 Msa0550940:five_prime_UTR 15.0%
!!! TCACTTTTATTTTATTTATC+AGG + chr4_1:46527813-46527832 Msa0550940:five_prime_UTR 15.0%
!! TAGTGAAAATAAAGAAATAA+TGG + chr4_1:46527674-46527693 Msa0550940:five_prime_UTR 15.0%
!!! TCACTTTTATTTTATTTATC+AGG + chr4_1:46527813-46527832 Msa0550940:five_prime_UTR 15.0%
!!! GAAAATAAAGAAATAATGGA+AGG + chr4_1:46527678-46527697 Msa0550940:five_prime_UTR 20.0%
!!! AATAATAGTTTGAGTTTTGT+AGG + chr4_1:46527932-46527951 Msa0550940:intron 20.0%
!! TAAATACCAACTTGAATAAA+TGG - chr4_1:46529403-46529422 None:intergenic 20.0%
!!! GAAAATAAAGAAATAATGGA+AGG + chr4_1:46527678-46527697 Msa0550940:five_prime_UTR 20.0%
!!! AATAATAGTTTGAGTTTTGT+AGG + chr4_1:46527932-46527951 Msa0550940:intron 20.0%
!! TAAATACCAACTTGAATAAA+TGG - chr4_1:46529403-46529422 None:intergenic 20.0%
! AAATTTAGTAGTAGTACTAG+TGG + chr4_1:46527616-46527635 Msa0550940:five_prime_UTR 25.0%
! TGTAGGAGAAAAAAAAAACA+TGG + chr4_1:46527949-46527968 Msa0550940:intron 25.0%
! AAAAGAAATTGATGTTTACC+AGG + chr4_1:46528147-46528166 Msa0550940:CDS 25.0%
!!! TTTTGGTTTTCTTAATTCTC+AGG + chr4_1:46528560-46528579 Msa0550940:intron 25.0%
! AGAAATAGTCAATGATTTAG+TGG + chr4_1:46529212-46529231 Msa0550940:three_prime_UTR 25.0%
! TACTACTATAGTATAAGTCT+AGG + chr4_1:46529347-46529366 Msa0550940:three_prime_UTR 25.0%
!!! ATTTGCTTGCATATTTTGAT+TGG + chr4_1:46529430-46529449 Msa0550940:three_prime_UTR 25.0%
! AATTATTCAACAAAGTTCAG+CGG + chr4_1:46529458-46529477 Msa0550940:three_prime_UTR 25.0%
! AAATTTAGTAGTAGTACTAG+TGG + chr4_1:46527616-46527635 Msa0550940:five_prime_UTR 25.0%
! TGTAGGAGAAAAAAAAAACA+TGG + chr4_1:46527949-46527968 Msa0550940:intron 25.0%
! AAAAGAAATTGATGTTTACC+AGG + chr4_1:46528147-46528166 Msa0550940:CDS 25.0%
!!! TTTTGGTTTTCTTAATTCTC+AGG + chr4_1:46528560-46528579 Msa0550940:intron 25.0%
! AGAAATAGTCAATGATTTAG+TGG + chr4_1:46529212-46529231 Msa0550940:three_prime_UTR 25.0%
! TACTACTATAGTATAAGTCT+AGG + chr4_1:46529347-46529366 Msa0550940:three_prime_UTR 25.0%
!!! ATTTGCTTGCATATTTTGAT+TGG + chr4_1:46529430-46529449 Msa0550940:three_prime_UTR 25.0%
! AATTATTCAACAAAGTTCAG+CGG + chr4_1:46529458-46529477 Msa0550940:three_prime_UTR 25.0%
TCTCTTCACAAATTGTTTGT+TGG - chr4_1:46528027-46528046 None:intergenic 30.0%
! TCAAATTCCACAACATTTTC+CGG + chr4_1:46528250-46528269 Msa0550940:CDS 30.0%
AATTCATTACCTTTGTAGCA+TGG + chr4_1:46528379-46528398 Msa0550940:intron 30.0%
! TCATAGCTAATAACTCGTTT+TGG + chr4_1:46528543-46528562 Msa0550940:intron 30.0%
! TCTTTGCTGAAAAGAGTATA+GGG - chr4_1:46528791-46528810 None:intergenic 30.0%
! TTCTTTGCTGAAAAGAGTAT+AGG - chr4_1:46528792-46528811 None:intergenic 30.0%
! TAGATTAGCTGATTAGATAC+TGG + chr4_1:46529156-46529175 Msa0550940:three_prime_UTR 30.0%
! CTATTTCTCCAAAAAAAACC+CGG - chr4_1:46529200-46529219 None:intergenic 30.0%
ATTAACTGCACTGAGAAAAT+GGG - chr4_1:46529309-46529328 None:intergenic 30.0%
AATTAACTGCACTGAGAAAA+TGG - chr4_1:46529310-46529329 None:intergenic 30.0%
TCTCTTCACAAATTGTTTGT+TGG - chr4_1:46528027-46528046 None:intergenic 30.0%
! TCAAATTCCACAACATTTTC+CGG + chr4_1:46528250-46528269 Msa0550940:CDS 30.0%
AATTCATTACCTTTGTAGCA+TGG + chr4_1:46528379-46528398 Msa0550940:intron 30.0%
! TCATAGCTAATAACTCGTTT+TGG + chr4_1:46528543-46528562 Msa0550940:intron 30.0%
! TCTTTGCTGAAAAGAGTATA+GGG - chr4_1:46528791-46528810 None:intergenic 30.0%
! TTCTTTGCTGAAAAGAGTAT+AGG - chr4_1:46528792-46528811 None:intergenic 30.0%
! TAGATTAGCTGATTAGATAC+TGG + chr4_1:46529156-46529175 Msa0550940:three_prime_UTR 30.0%
! CTATTTCTCCAAAAAAAACC+CGG - chr4_1:46529200-46529219 None:intergenic 30.0%
ATTAACTGCACTGAGAAAAT+GGG - chr4_1:46529309-46529328 None:intergenic 30.0%
AATTAACTGCACTGAGAAAA+TGG - chr4_1:46529310-46529329 None:intergenic 30.0%
AAACATGGAAGTTGTTGTAG+CGG + chr4_1:46527964-46527983 Msa0550940:exon 35.0%
!! GACTTGCTTGATTTTTCCAA+CGG + chr4_1:46528100-46528119 Msa0550940:CDS 35.0%
! GAATTTCAACATGGTTCTGT+TGG + chr4_1:46528124-46528143 Msa0550940:CDS 35.0%
AGAAATTGATGTTTACCAGG+AGG + chr4_1:46528150-46528169 Msa0550940:CDS 35.0%
TTGCATGATTAAAGACTCAC+CGG - chr4_1:46528325-46528344 None:intergenic 35.0%
TATCATTAGTGTCATGTGTC+TGG + chr4_1:46528491-46528510 Msa0550940:intron 35.0%
AAAATCCACACGTTACAGTT+GGG - chr4_1:46528765-46528784 None:intergenic 35.0%
AAAAATCCACACGTTACAGT+TGG - chr4_1:46528766-46528785 None:intergenic 35.0%
! CAAGCGTTACATAGTGTTTT+CGG - chr4_1:46528921-46528940 None:intergenic 35.0%
AAAACACTATGTAACGCTTG+TGG + chr4_1:46528921-46528940 Msa0550940:CDS 35.0%
! ATTTGTTGAGAACGTGATAG+TGG + chr4_1:46529119-46529138 Msa0550940:three_prime_UTR 35.0%
TCTTCGCCATTTATTCAAGT+TGG + chr4_1:46529394-46529413 Msa0550940:three_prime_UTR 35.0%
AAACATGGAAGTTGTTGTAG+CGG + chr4_1:46527964-46527983 Msa0550940:exon 35.0%
!! GACTTGCTTGATTTTTCCAA+CGG + chr4_1:46528100-46528119 Msa0550940:CDS 35.0%
! GAATTTCAACATGGTTCTGT+TGG + chr4_1:46528124-46528143 Msa0550940:CDS 35.0%
AGAAATTGATGTTTACCAGG+AGG + chr4_1:46528150-46528169 Msa0550940:CDS 35.0%
TTGCATGATTAAAGACTCAC+CGG - chr4_1:46528325-46528344 None:intergenic 35.0%
TATCATTAGTGTCATGTGTC+TGG + chr4_1:46528491-46528510 Msa0550940:intron 35.0%
AAAATCCACACGTTACAGTT+GGG - chr4_1:46528765-46528784 None:intergenic 35.0%
AAAAATCCACACGTTACAGT+TGG - chr4_1:46528766-46528785 None:intergenic 35.0%
! CAAGCGTTACATAGTGTTTT+CGG - chr4_1:46528921-46528940 None:intergenic 35.0%
AAAACACTATGTAACGCTTG+TGG + chr4_1:46528921-46528940 Msa0550940:CDS 35.0%
! ATTTGTTGAGAACGTGATAG+TGG + chr4_1:46529119-46529138 Msa0550940:three_prime_UTR 35.0%
TCTTCGCCATTTATTCAAGT+TGG + chr4_1:46529394-46529413 Msa0550940:three_prime_UTR 35.0%
!! GTTTGGAAGCACTGAAATGA+GGG - chr4_1:46527750-46527769 None:intergenic 40.0%
TTTCAGTGCTTCCAAACCAA+AGG + chr4_1:46527753-46527772 Msa0550940:five_prime_UTR 40.0%
CAAGAGAGTTTCCTTTGGTT+TGG - chr4_1:46527767-46527786 None:intergenic 40.0%
AACCAAAGGAAACTCTCTTG+CGG + chr4_1:46527767-46527786 Msa0550940:five_prime_UTR 40.0%
TGATGAAGAGTGACAAAGAG+AGG - chr4_1:46527796-46527815 None:intergenic 40.0%
ATAGATTCTGTCCTCAAGCT+TGG - chr4_1:46528001-46528020 None:intergenic 40.0%
AACGCAAACAACGTTGTTGT+CGG + chr4_1:46528058-46528077 Msa0550940:CDS 40.0%
TCCAACGGTGAATTTCAACA+TGG + chr4_1:46528115-46528134 Msa0550940:CDS 40.0%
ACCATGTTGAAATTCACCGT+TGG - chr4_1:46528119-46528138 None:intergenic 40.0%
AATTGATGTTTACCAGGAGG+AGG + chr4_1:46528153-46528172 Msa0550940:CDS 40.0%
CAGAAATGTCCATGCTACAA+AGG - chr4_1:46528391-46528410 None:intergenic 40.0%
ATTAGTGTCATGTGTCTGGT+CGG + chr4_1:46528495-46528514 Msa0550940:intron 40.0%
TTCCAAATCCGCAACATCAT+CGG - chr4_1:46528586-46528605 None:intergenic 40.0%
ATGATGTTGCGGATTTGGAA+TGG + chr4_1:46528586-46528605 Msa0550940:CDS 40.0%
! TGATGTTGCGGATTTGGAAT+GGG + chr4_1:46528587-46528606 Msa0550940:CDS 40.0%
GGATACAATAGAGAGAGTTC+TGG - chr4_1:46528639-46528658 None:intergenic 40.0%
CTCTCTATTGTATCCAGTTC+AGG + chr4_1:46528644-46528663 Msa0550940:CDS 40.0%
CTTCTTGTCTTGGTTGTTCT+AGG - chr4_1:46528741-46528760 None:intergenic 40.0%
CTAGAACAACCAAGACAAGA+AGG + chr4_1:46528739-46528758 Msa0550940:CDS 40.0%
! TCTTTTCAGCAAAGAAGCAG+AGG + chr4_1:46528796-46528815 Msa0550940:CDS 40.0%
TATGTAACGCTTGTGGTGTT+CGG + chr4_1:46528928-46528947 Msa0550940:CDS 40.0%
TGAATTTCACCGGAAAACGT+CGG - chr4_1:46528999-46529018 None:intergenic 40.0%
GCTGTTCGAATGAATTTCAC+CGG - chr4_1:46529009-46529028 None:intergenic 40.0%
TCATTTCCAAAACCTTACGG+TGG - chr4_1:46529031-46529050 None:intergenic 40.0%
!!! ACCGTAAGGTTTTGGAAATG+AGG + chr4_1:46529030-46529049 Msa0550940:CDS 40.0%
GCCTCATTTCCAAAACCTTA+CGG - chr4_1:46529034-46529053 None:intergenic 40.0%
!!! GTAAGGTTTTGGAAATGAGG+CGG + chr4_1:46529033-46529052 Msa0550940:CDS 40.0%
AACTCGTGACCATTTGAATC+CGG - chr4_1:46529094-46529113 None:intergenic 40.0%
!! AGAACGTGATAGTGGTAACT+TGG + chr4_1:46529127-46529146 Msa0550940:three_prime_UTR 40.0%
!! GTGATAGTGGTAACTTGGTA+AGG + chr4_1:46529132-46529151 Msa0550940:three_prime_UTR 40.0%
TTAGATACTGGTGAACCAAC+TGG + chr4_1:46529168-46529187 Msa0550940:three_prime_UTR 40.0%
!! GTTTGGAAGCACTGAAATGA+GGG - chr4_1:46527750-46527769 None:intergenic 40.0%
TTTCAGTGCTTCCAAACCAA+AGG + chr4_1:46527753-46527772 Msa0550940:five_prime_UTR 40.0%
CAAGAGAGTTTCCTTTGGTT+TGG - chr4_1:46527767-46527786 None:intergenic 40.0%
AACCAAAGGAAACTCTCTTG+CGG + chr4_1:46527767-46527786 Msa0550940:five_prime_UTR 40.0%
TGATGAAGAGTGACAAAGAG+AGG - chr4_1:46527796-46527815 None:intergenic 40.0%
ATAGATTCTGTCCTCAAGCT+TGG - chr4_1:46528001-46528020 None:intergenic 40.0%
AACGCAAACAACGTTGTTGT+CGG + chr4_1:46528058-46528077 Msa0550940:CDS 40.0%
TCCAACGGTGAATTTCAACA+TGG + chr4_1:46528115-46528134 Msa0550940:CDS 40.0%
ACCATGTTGAAATTCACCGT+TGG - chr4_1:46528119-46528138 None:intergenic 40.0%
AATTGATGTTTACCAGGAGG+AGG + chr4_1:46528153-46528172 Msa0550940:CDS 40.0%
CAGAAATGTCCATGCTACAA+AGG - chr4_1:46528391-46528410 None:intergenic 40.0%
ATTAGTGTCATGTGTCTGGT+CGG + chr4_1:46528495-46528514 Msa0550940:intron 40.0%
TTCCAAATCCGCAACATCAT+CGG - chr4_1:46528586-46528605 None:intergenic 40.0%
ATGATGTTGCGGATTTGGAA+TGG + chr4_1:46528586-46528605 Msa0550940:CDS 40.0%
! TGATGTTGCGGATTTGGAAT+GGG + chr4_1:46528587-46528606 Msa0550940:CDS 40.0%
GGATACAATAGAGAGAGTTC+TGG - chr4_1:46528639-46528658 None:intergenic 40.0%
CTCTCTATTGTATCCAGTTC+AGG + chr4_1:46528644-46528663 Msa0550940:CDS 40.0%
CTTCTTGTCTTGGTTGTTCT+AGG - chr4_1:46528741-46528760 None:intergenic 40.0%
CTAGAACAACCAAGACAAGA+AGG + chr4_1:46528739-46528758 Msa0550940:CDS 40.0%
! TCTTTTCAGCAAAGAAGCAG+AGG + chr4_1:46528796-46528815 Msa0550940:CDS 40.0%
TATGTAACGCTTGTGGTGTT+CGG + chr4_1:46528928-46528947 Msa0550940:CDS 40.0%
TGAATTTCACCGGAAAACGT+CGG - chr4_1:46528999-46529018 None:intergenic 40.0%
GCTGTTCGAATGAATTTCAC+CGG - chr4_1:46529009-46529028 None:intergenic 40.0%
TCATTTCCAAAACCTTACGG+TGG - chr4_1:46529031-46529050 None:intergenic 40.0%
!!! ACCGTAAGGTTTTGGAAATG+AGG + chr4_1:46529030-46529049 Msa0550940:CDS 40.0%
GCCTCATTTCCAAAACCTTA+CGG - chr4_1:46529034-46529053 None:intergenic 40.0%
!!! GTAAGGTTTTGGAAATGAGG+CGG + chr4_1:46529033-46529052 Msa0550940:CDS 40.0%
AACTCGTGACCATTTGAATC+CGG - chr4_1:46529094-46529113 None:intergenic 40.0%
!! AGAACGTGATAGTGGTAACT+TGG + chr4_1:46529127-46529146 Msa0550940:three_prime_UTR 40.0%
!! GTGATAGTGGTAACTTGGTA+AGG + chr4_1:46529132-46529151 Msa0550940:three_prime_UTR 40.0%
TTAGATACTGGTGAACCAAC+TGG + chr4_1:46529168-46529187 Msa0550940:three_prime_UTR 40.0%
GTGCATCACTCTCTATGAGA+AGG + chr4_1:46527592-46527611 Msa0550940:five_prime_UTR 45.0%
!! CGAAACAAGCGTTGAGGTAT+TGG - chr4_1:46527727-46527746 None:intergenic 45.0%
!! GGTTTGGAAGCACTGAAATG+AGG - chr4_1:46527751-46527770 None:intergenic 45.0%
AACCGCAAGAGAGTTTCCTT+TGG - chr4_1:46527772-46527791 None:intergenic 45.0%
!! AAGCGTTGAAACCAAGCTTG+AGG + chr4_1:46527987-46528006 Msa0550940:CDS 45.0%
GAAAAAAACAGCACCACCTC+AGG + chr4_1:46528193-46528212 Msa0550940:CDS 45.0%
TTCATGTTCAGAACCTGAGG+TGG - chr4_1:46528209-46528228 None:intergenic 45.0%
TCGTTCATGTTCAGAACCTG+AGG - chr4_1:46528212-46528231 None:intergenic 45.0%
!! GAGTCTGACTCCATTTTTGC+CGG + chr4_1:46528286-46528305 Msa0550940:CDS 45.0%
TGCTAAACCACCGGCAAAAA+TGG - chr4_1:46528299-46528318 None:intergenic 45.0%
TATTGTATCCAGTTCAGGCC+CGG + chr4_1:46528649-46528668 Msa0550940:CDS 45.0%
!! GCTGGGAATAAGCATTGGTT+GGG - chr4_1:46528698-46528717 None:intergenic 45.0%
!! AGCTGGGAATAAGCATTGGT+TGG - chr4_1:46528699-46528718 None:intergenic 45.0%
AGAGAGCTGGGAATAAGCAT+TGG - chr4_1:46528703-46528722 None:intergenic 45.0%
! TCTGCGGATTATAGAGAGCT+GGG - chr4_1:46528715-46528734 None:intergenic 45.0%
! TTCTGCGGATTATAGAGAGC+TGG - chr4_1:46528716-46528735 None:intergenic 45.0%
! TGGTTGTTCTAGGCTTTCTG+CGG - chr4_1:46528731-46528750 None:intergenic 45.0%
! ACTGTGGCGTTTTCTGAACA+TGG - chr4_1:46528878-46528897 None:intergenic 45.0%
ATGTTCAGAAAACGCCACAG+TGG + chr4_1:46528877-46528896 Msa0550940:CDS 45.0%
! CATAGTGTTTTCGGTCCAAG+CGG - chr4_1:46528912-46528931 None:intergenic 45.0%
TGTGGTGTTCGGTTTAAGTC+CGG + chr4_1:46528939-46528958 Msa0550940:CDS 45.0%
CATTTGAATCCGGTTCAGAC+CGG - chr4_1:46529084-46529103 None:intergenic 45.0%
!!! GGTCTGAACCGGGTTTTTTT+TGG + chr4_1:46529189-46529208 Msa0550940:three_prime_UTR 45.0%
! AGTGAGTGACTAGTCAGCTA+AGG + chr4_1:46529236-46529255 Msa0550940:three_prime_UTR 45.0%
TAGTCAGCTAAGGCAGGTAA+CGG + chr4_1:46529246-46529265 Msa0550940:three_prime_UTR 45.0%
!! TAAGGCAGGTAACGGAGATT+AGG + chr4_1:46529254-46529273 Msa0550940:three_prime_UTR 45.0%
GTGCATCACTCTCTATGAGA+AGG + chr4_1:46527592-46527611 Msa0550940:five_prime_UTR 45.0%
!! CGAAACAAGCGTTGAGGTAT+TGG - chr4_1:46527727-46527746 None:intergenic 45.0%
!! GGTTTGGAAGCACTGAAATG+AGG - chr4_1:46527751-46527770 None:intergenic 45.0%
AACCGCAAGAGAGTTTCCTT+TGG - chr4_1:46527772-46527791 None:intergenic 45.0%
!! AAGCGTTGAAACCAAGCTTG+AGG + chr4_1:46527987-46528006 Msa0550940:CDS 45.0%
GAAAAAAACAGCACCACCTC+AGG + chr4_1:46528193-46528212 Msa0550940:CDS 45.0%
TTCATGTTCAGAACCTGAGG+TGG - chr4_1:46528209-46528228 None:intergenic 45.0%
TCGTTCATGTTCAGAACCTG+AGG - chr4_1:46528212-46528231 None:intergenic 45.0%
!! GAGTCTGACTCCATTTTTGC+CGG + chr4_1:46528286-46528305 Msa0550940:CDS 45.0%
TGCTAAACCACCGGCAAAAA+TGG - chr4_1:46528299-46528318 None:intergenic 45.0%
TATTGTATCCAGTTCAGGCC+CGG + chr4_1:46528649-46528668 Msa0550940:CDS 45.0%
!! GCTGGGAATAAGCATTGGTT+GGG - chr4_1:46528698-46528717 None:intergenic 45.0%
!! AGCTGGGAATAAGCATTGGT+TGG - chr4_1:46528699-46528718 None:intergenic 45.0%
AGAGAGCTGGGAATAAGCAT+TGG - chr4_1:46528703-46528722 None:intergenic 45.0%
! TCTGCGGATTATAGAGAGCT+GGG - chr4_1:46528715-46528734 None:intergenic 45.0%
! TTCTGCGGATTATAGAGAGC+TGG - chr4_1:46528716-46528735 None:intergenic 45.0%
! TGGTTGTTCTAGGCTTTCTG+CGG - chr4_1:46528731-46528750 None:intergenic 45.0%
! ACTGTGGCGTTTTCTGAACA+TGG - chr4_1:46528878-46528897 None:intergenic 45.0%
ATGTTCAGAAAACGCCACAG+TGG + chr4_1:46528877-46528896 Msa0550940:CDS 45.0%
! CATAGTGTTTTCGGTCCAAG+CGG - chr4_1:46528912-46528931 None:intergenic 45.0%
TGTGGTGTTCGGTTTAAGTC+CGG + chr4_1:46528939-46528958 Msa0550940:CDS 45.0%
CATTTGAATCCGGTTCAGAC+CGG - chr4_1:46529084-46529103 None:intergenic 45.0%
!!! GGTCTGAACCGGGTTTTTTT+TGG + chr4_1:46529189-46529208 Msa0550940:three_prime_UTR 45.0%
! AGTGAGTGACTAGTCAGCTA+AGG + chr4_1:46529236-46529255 Msa0550940:three_prime_UTR 45.0%
TAGTCAGCTAAGGCAGGTAA+CGG + chr4_1:46529246-46529265 Msa0550940:three_prime_UTR 45.0%
!! TAAGGCAGGTAACGGAGATT+AGG + chr4_1:46529254-46529273 Msa0550940:three_prime_UTR 45.0%
CTTCTTCTTCTTCCTCCTCC+TGG - chr4_1:46528168-46528187 None:intergenic 50.0%
! TCCACAACATTTTCCGGTGC+CGG + chr4_1:46528256-46528275 Msa0550940:CDS 50.0%
!! TCTGACTCCATTTTTGCCGG+TGG + chr4_1:46528289-46528308 Msa0550940:CDS 50.0%
TTCTCAGGCCGATGATGTTG+CGG + chr4_1:46528575-46528594 Msa0550940:intron 50.0%
GGAATGGGTGTCTCACTTTG+TGG + chr4_1:46528602-46528621 Msa0550940:CDS 50.0%
ATTGTATCCAGTTCAGGCCC+GGG + chr4_1:46528650-46528669 Msa0550940:CDS 50.0%
!! GAATAAGCATTGGTTGGGCC+CGG - chr4_1:46528693-46528712 None:intergenic 50.0%
ACAGTTGGGCCTTCTTGTCT+TGG - chr4_1:46528751-46528770 None:intergenic 50.0%
GAAAAAGCCCGAAGCCCAAA+CGG + chr4_1:46528818-46528837 Msa0550940:CDS 50.0%
AAAAAGCCCGAAGCCCAAAC+GGG + chr4_1:46528819-46528838 Msa0550940:CDS 50.0%
! GCGTTTTCTGAACATGGCAG+TGG - chr4_1:46528872-46528891 None:intergenic 50.0%
GTGTTCGGTTTAAGTCCGGT+CGG + chr4_1:46528943-46528962 Msa0550940:CDS 50.0%
TGCATGCAGGTCTATACTCC+GGG - chr4_1:46528974-46528993 None:intergenic 50.0%
CTGCATGCAGGTCTATACTC+CGG - chr4_1:46528975-46528994 None:intergenic 50.0%
TCATTCGAACAGCCACCGTA+AGG + chr4_1:46529016-46529035 Msa0550940:CDS 50.0%
! GAACAGCCACCGTAAGGTTT+TGG + chr4_1:46529022-46529041 Msa0550940:CDS 50.0%
!!! AGGTTTTGGAAATGAGGCGG+AGG + chr4_1:46529036-46529055 Msa0550940:CDS 50.0%
TTTGGAAATGAGGCGGAGGA+AGG + chr4_1:46529040-46529059 Msa0550940:CDS 50.0%
CGGTCTGAACCGGATTCAAA+TGG + chr4_1:46529082-46529101 Msa0550940:CDS 50.0%
! GTGAACCAACTGGTCTGAAC+CGG + chr4_1:46529178-46529197 Msa0550940:three_prime_UTR 50.0%
! TGAACCAACTGGTCTGAACC+GGG + chr4_1:46529179-46529198 Msa0550940:three_prime_UTR 50.0%
AAAACCCGGTTCAGACCAGT+TGG - chr4_1:46529186-46529205 None:intergenic 50.0%
! AGTGACTAGTCAGCTAAGGC+AGG + chr4_1:46529240-46529259 Msa0550940:three_prime_UTR 50.0%
CTTCTTCTTCTTCCTCCTCC+TGG - chr4_1:46528168-46528187 None:intergenic 50.0%
! TCCACAACATTTTCCGGTGC+CGG + chr4_1:46528256-46528275 Msa0550940:CDS 50.0%
!! TCTGACTCCATTTTTGCCGG+TGG + chr4_1:46528289-46528308 Msa0550940:CDS 50.0%
TTCTCAGGCCGATGATGTTG+CGG + chr4_1:46528575-46528594 Msa0550940:intron 50.0%
GGAATGGGTGTCTCACTTTG+TGG + chr4_1:46528602-46528621 Msa0550940:CDS 50.0%
ATTGTATCCAGTTCAGGCCC+GGG + chr4_1:46528650-46528669 Msa0550940:CDS 50.0%
!! GAATAAGCATTGGTTGGGCC+CGG - chr4_1:46528693-46528712 None:intergenic 50.0%
ACAGTTGGGCCTTCTTGTCT+TGG - chr4_1:46528751-46528770 None:intergenic 50.0%
GAAAAAGCCCGAAGCCCAAA+CGG + chr4_1:46528818-46528837 Msa0550940:CDS 50.0%
AAAAAGCCCGAAGCCCAAAC+GGG + chr4_1:46528819-46528838 Msa0550940:CDS 50.0%
! GCGTTTTCTGAACATGGCAG+TGG - chr4_1:46528872-46528891 None:intergenic 50.0%
GTGTTCGGTTTAAGTCCGGT+CGG + chr4_1:46528943-46528962 Msa0550940:CDS 50.0%
TGCATGCAGGTCTATACTCC+GGG - chr4_1:46528974-46528993 None:intergenic 50.0%
CTGCATGCAGGTCTATACTC+CGG - chr4_1:46528975-46528994 None:intergenic 50.0%
TCATTCGAACAGCCACCGTA+AGG + chr4_1:46529016-46529035 Msa0550940:CDS 50.0%
! GAACAGCCACCGTAAGGTTT+TGG + chr4_1:46529022-46529041 Msa0550940:CDS 50.0%
!!! AGGTTTTGGAAATGAGGCGG+AGG + chr4_1:46529036-46529055 Msa0550940:CDS 50.0%
TTTGGAAATGAGGCGGAGGA+AGG + chr4_1:46529040-46529059 Msa0550940:CDS 50.0%
CGGTCTGAACCGGATTCAAA+TGG + chr4_1:46529082-46529101 Msa0550940:CDS 50.0%
! GTGAACCAACTGGTCTGAAC+CGG + chr4_1:46529178-46529197 Msa0550940:three_prime_UTR 50.0%
! TGAACCAACTGGTCTGAACC+GGG + chr4_1:46529179-46529198 Msa0550940:three_prime_UTR 50.0%
AAAACCCGGTTCAGACCAGT+TGG - chr4_1:46529186-46529205 None:intergenic 50.0%
! AGTGACTAGTCAGCTAAGGC+AGG + chr4_1:46529240-46529259 Msa0550940:three_prime_UTR 50.0%
! TGAGGGCGAAACAAGCGTTG+AGG - chr4_1:46527733-46527752 None:intergenic 55.0%
! TCCGGCACCGGAAAATGTTG+TGG - chr4_1:46528260-46528279 None:intergenic 55.0%
!! ACATTTTCCGGTGCCGGAGA+CGG + chr4_1:46528262-46528281 Msa0550940:CDS 55.0%
TGCCGGTGGTTTAGCAGTTC+CGG + chr4_1:46528303-46528322 Msa0550940:CDS 55.0%
CACCGGAACTGCTAAACCAC+CGG - chr4_1:46528308-46528327 None:intergenic 55.0%
GGCCGATGATGTTGCGGATT+TGG + chr4_1:46528581-46528600 Msa0550940:intron 55.0%
GAAGGCCCAACTGTAACGTG+TGG + chr4_1:46528757-46528776 Msa0550940:CDS 55.0%
AAACTGAGCCCCACCCGTTT+GGG - chr4_1:46528835-46528854 None:intergenic 55.0%
GTGGGGCTCAGTTTCAACGA+CGG + chr4_1:46528841-46528860 Msa0550940:CDS 55.0%
AAAACGCCACAGTGGAGAGC+TGG + chr4_1:46528885-46528904 Msa0550940:CDS 55.0%
!! TAAGTCCGGTCGGCTTTTCC+CGG + chr4_1:46528953-46528972 Msa0550940:CDS 55.0%
ATACTCCGGGAAAAGCCGAC+CGG - chr4_1:46528961-46528980 None:intergenic 55.0%
GAAAACGTCGGACTGCATGC+AGG - chr4_1:46528987-46529006 None:intergenic 55.0%
! GCATGCAGTCCGACGTTTTC+CGG + chr4_1:46528987-46529006 Msa0550940:CDS 55.0%
GAGGAAGGAGGTGGATGAAC+CGG + chr4_1:46529055-46529074 Msa0550940:CDS 55.0%
! GAGGTGGATGAACCGGTTTC+CGG + chr4_1:46529062-46529081 Msa0550940:CDS 55.0%
! AACCGGTTTCCGGTCTGAAC+CGG + chr4_1:46529072-46529091 Msa0550940:CDS 55.0%
ATCCGGTTCAGACCGGAAAC+CGG - chr4_1:46529077-46529096 None:intergenic 55.0%
! TGAGGGCGAAACAAGCGTTG+AGG - chr4_1:46527733-46527752 None:intergenic 55.0%
! TCCGGCACCGGAAAATGTTG+TGG - chr4_1:46528260-46528279 None:intergenic 55.0%
!! ACATTTTCCGGTGCCGGAGA+CGG + chr4_1:46528262-46528281 Msa0550940:CDS 55.0%
TGCCGGTGGTTTAGCAGTTC+CGG + chr4_1:46528303-46528322 Msa0550940:CDS 55.0%
CACCGGAACTGCTAAACCAC+CGG - chr4_1:46528308-46528327 None:intergenic 55.0%
GGCCGATGATGTTGCGGATT+TGG + chr4_1:46528581-46528600 Msa0550940:intron 55.0%
GAAGGCCCAACTGTAACGTG+TGG + chr4_1:46528757-46528776 Msa0550940:CDS 55.0%
AAACTGAGCCCCACCCGTTT+GGG - chr4_1:46528835-46528854 None:intergenic 55.0%
GTGGGGCTCAGTTTCAACGA+CGG + chr4_1:46528841-46528860 Msa0550940:CDS 55.0%
AAAACGCCACAGTGGAGAGC+TGG + chr4_1:46528885-46528904 Msa0550940:CDS 55.0%
!! TAAGTCCGGTCGGCTTTTCC+CGG + chr4_1:46528953-46528972 Msa0550940:CDS 55.0%
ATACTCCGGGAAAAGCCGAC+CGG - chr4_1:46528961-46528980 None:intergenic 55.0%
GAAAACGTCGGACTGCATGC+AGG - chr4_1:46528987-46529006 None:intergenic 55.0%
! GCATGCAGTCCGACGTTTTC+CGG + chr4_1:46528987-46529006 Msa0550940:CDS 55.0%
GAGGAAGGAGGTGGATGAAC+CGG + chr4_1:46529055-46529074 Msa0550940:CDS 55.0%
! GAGGTGGATGAACCGGTTTC+CGG + chr4_1:46529062-46529081 Msa0550940:CDS 55.0%
! AACCGGTTTCCGGTCTGAAC+CGG + chr4_1:46529072-46529091 Msa0550940:CDS 55.0%
ATCCGGTTCAGACCGGAAAC+CGG - chr4_1:46529077-46529096 None:intergenic 55.0%
GAAACTGAGCCCCACCCGTT+TGG - chr4_1:46528836-46528855 None:intergenic 60.0%
GGAAATGAGGCGGAGGAAGG+AGG + chr4_1:46529043-46529062 Msa0550940:CDS 60.0%
AATGAGGCGGAGGAAGGAGG+TGG + chr4_1:46529046-46529065 Msa0550940:CDS 60.0%
GAAACTGAGCCCCACCCGTT+TGG - chr4_1:46528836-46528855 None:intergenic 60.0%
GGAAATGAGGCGGAGGAAGG+AGG + chr4_1:46529043-46529062 Msa0550940:CDS 60.0%
AATGAGGCGGAGGAAGGAGG+TGG + chr4_1:46529046-46529065 Msa0550940:CDS 60.0%
GGAGTCAGACTCGCCGTCTC+CGG - chr4_1:46528278-46528297 None:intergenic 65.0%
!! TCTAGGTTCCGGTTCGGCCC+GGG - chr4_1:46528670-46528689 None:intergenic 65.0%
!! GTCTAGGTTCCGGTTCGGCC+CGG - chr4_1:46528671-46528690 None:intergenic 65.0%
GGCCGAACCGGAACCTAGAC+CGG + chr4_1:46528671-46528690 Msa0550940:CDS 65.0%
GCCGAACCGGAACCTAGACC+GGG + chr4_1:46528672-46528691 Msa0550940:CDS 65.0%
GCCCGGTCTAGGTTCCGGTT+CGG - chr4_1:46528676-46528695 None:intergenic 65.0%
GTTGGGCCCGGTCTAGGTTC+CGG - chr4_1:46528681-46528700 None:intergenic 65.0%
!! GCATTGGTTGGGCCCGGTCT+AGG - chr4_1:46528687-46528706 None:intergenic 65.0%
AAGCCCGAAGCCCAAACGGG+TGG + chr4_1:46528822-46528841 Msa0550940:CDS 65.0%
AGCCCGAAGCCCAAACGGGT+GGG + chr4_1:46528823-46528842 Msa0550940:CDS 65.0%
AGCCCCACCCGTTTGGGCTT+CGG - chr4_1:46528829-46528848 None:intergenic 65.0%
AGCGGACCAGCTCTCCACTG+TGG - chr4_1:46528894-46528913 None:intergenic 65.0%
CAGTGGAGAGCTGGTCCGCT+TGG + chr4_1:46528894-46528913 Msa0550940:CDS 65.0%
GGAGTCAGACTCGCCGTCTC+CGG - chr4_1:46528278-46528297 None:intergenic 65.0%
!! TCTAGGTTCCGGTTCGGCCC+GGG - chr4_1:46528670-46528689 None:intergenic 65.0%
!! GTCTAGGTTCCGGTTCGGCC+CGG - chr4_1:46528671-46528690 None:intergenic 65.0%
GGCCGAACCGGAACCTAGAC+CGG + chr4_1:46528671-46528690 Msa0550940:CDS 65.0%
GCCGAACCGGAACCTAGACC+GGG + chr4_1:46528672-46528691 Msa0550940:CDS 65.0%
GCCCGGTCTAGGTTCCGGTT+CGG - chr4_1:46528676-46528695 None:intergenic 65.0%
GTTGGGCCCGGTCTAGGTTC+CGG - chr4_1:46528681-46528700 None:intergenic 65.0%
!! GCATTGGTTGGGCCCGGTCT+AGG - chr4_1:46528687-46528706 None:intergenic 65.0%
AAGCCCGAAGCCCAAACGGG+TGG + chr4_1:46528822-46528841 Msa0550940:CDS 65.0%
AGCCCGAAGCCCAAACGGGT+GGG + chr4_1:46528823-46528842 Msa0550940:CDS 65.0%
AGCCCCACCCGTTTGGGCTT+CGG - chr4_1:46528829-46528848 None:intergenic 65.0%
AGCGGACCAGCTCTCCACTG+TGG - chr4_1:46528894-46528913 None:intergenic 65.0%
CAGTGGAGAGCTGGTCCGCT+TGG + chr4_1:46528894-46528913 Msa0550940:CDS 65.0%
AGACTCGCCGTCTCCGGCAC+CGG - chr4_1:46528272-46528291 None:intergenic 70.0%
AGTTCAGGCCCGGGCCGAAC+CGG + chr4_1:46528659-46528678 Msa0550940:CDS 70.0%
GCCCGAAGCCCAAACGGGTG+GGG + chr4_1:46528824-46528843 Msa0550940:CDS 70.0%
GCCCCACCCGTTTGGGCTTC+GGG - chr4_1:46528828-46528847 None:intergenic 70.0%
AGACTCGCCGTCTCCGGCAC+CGG - chr4_1:46528272-46528291 None:intergenic 70.0%
AGTTCAGGCCCGGGCCGAAC+CGG + chr4_1:46528659-46528678 Msa0550940:CDS 70.0%
GCCCGAAGCCCAAACGGGTG+GGG + chr4_1:46528824-46528843 Msa0550940:CDS 70.0%
GCCCCACCCGTTTGGGCTTC+GGG - chr4_1:46528828-46528847 None:intergenic 70.0%
GGTTCGGCCCGGGCCTGAAC+TGG - chr4_1:46528660-46528679 None:intergenic 75.0%
GGTTCGGCCCGGGCCTGAAC+TGG - chr4_1:46528660-46528679 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 46527592 46529522 46527592 ID=Msa0550940;Name=Msa0550940
chr4_1 mRNA 46527592 46529522 46527592 ID=Msa0550940-mRNA-1;Parent=Msa0550940;Name=Msa0550940-mRNA-1;_AED=0.07;_eAED=0.07;_QI=257|1|1|1|0.5|0.33|3|407|296
chr4_1 exon 46527592 46527834 46527592 ID=Msa0550940-mRNA-1:exon:12567;Parent=Msa0550940-mRNA-1
chr4_1 exon 46527954 46528324 46527954 ID=Msa0550940-mRNA-1:exon:12568;Parent=Msa0550940-mRNA-1
chr4_1 exon 46528582 46529522 46528582 ID=Msa0550940-mRNA-1:exon:12569;Parent=Msa0550940-mRNA-1
chr4_1 five_prime_UTR 46527592 46527834 46527592 ID=Msa0550940-mRNA-1:five_prime_utr;Parent=Msa0550940-mRNA-1
chr4_1 five_prime_UTR 46527954 46527967 46527954 ID=Msa0550940-mRNA-1:five_prime_utr;Parent=Msa0550940-mRNA-1
chr4_1 CDS 46527968 46528324 46527968 ID=Msa0550940-mRNA-1:cds;Parent=Msa0550940-mRNA-1
chr4_1 CDS 46528582 46529115 46528582 ID=Msa0550940-mRNA-1:cds;Parent=Msa0550940-mRNA-1
chr4_1 three_prime_UTR 46529116 46529522 46529116 ID=Msa0550940-mRNA-1:three_prime_utr;Parent=Msa0550940-mRNA-1
Gene Sequence

>Msa0550940

ATGGAAGTTGTTGTAGCGGAAGCGTTGAAACCAAGCTTGAGGACAGAATCTATTTTCCAACAAACAATTTGTGAAGAGATTTTGTGTTTGAACGCAAACAACGTTGTTGTCGGAGAAGATTTTTCTGTCGACGACTTGCTTGATTTTTCCAACGGTGAATTTCAACATGGTTCTGTTGGAAAAGAAATTGATGTTTACCAGGAGGAGGAAGAAGAAGAAGAACATGAAAAAAACAGCACCACCTCAGGTTCTGAACATGAACGAACAGAAGATGACAACAATTCAAATTCCACAACATTTTCCGGTGCCGGAGACGGCGAGTCTGACTCCATTTTTGCCGGTGGTTTAGCAGTTCCGGCCGATGATGTTGCGGATTTGGAATGGGTGTCTCACTTTGTGGACGATTCTGTACCAGAACTCTCTCTATTGTATCCAGTTCAGGCCCGGGCCGAACCGGAACCTAGACCGGGCCCAACCAATGCTTATTCCCAGCTCTCTATAATCCGCAGAAAGCCTAGAACAACCAAGACAAGAAGGCCCAACTGTAACGTGTGGATTTTTAACCCTATACTCTTTTCAGCAAAGAAGCAGAGGAAAAAGCCCGAAGCCCAAACGGGTGGGGCTCAGTTTCAACGACGGTGCAGCCACTGCCATGTTCAGAAAACGCCACAGTGGAGAGCTGGTCCGCTTGGACCGAAAACACTATGTAACGCTTGTGGTGTTCGGTTTAAGTCCGGTCGGCTTTTCCCGGAGTATAGACCTGCATGCAGTCCGACGTTTTCCGGTGAAATTCATTCGAACAGCCACCGTAAGGTTTTGGAAATGAGGCGGAGGAAGGAGGTGGATGAACCGGTTTCCGGTCTGAACCGGATTCAAATGGTCACGAGTTGA
Protein sequence

>Msa0550940

MEVVVAEALKPSLRTESIFQQTICEEILCLNANNVVVGEDFSVDDLLDFSNGEFQHGSVGKEIDVYQEEEEEEEHEKNSTTSGSEHERTEDDNNSNSTTFSGAGDGESDSIFAGGLAVPADDVADLEWVSHFVDDSVPELSLLYPVQARAEPEPRPGPTNAYSQLSIIRRKPRTTKTRRPNCNVWIFNPILFSAKKQRKKPEAQTGGAQFQRRCSHCHVQKTPQWRAGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGEIHSNSHRKVLEMRRRKEVDEPVSGLNRIQMVTS*