AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0647180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647180 MtrunA17_Chr4g0035891 96.959 296 8 1 1 296 1 295 0.0 596
Msa0647180 MtrunA17_Chr3g0145121 53.292 319 107 8 1 296 1 300 1.42e-97 289
Msa0647180 MtrunA17_Chr8g0372291 39.159 309 138 10 1 281 1 287 9.13e-52 171
Msa0647180 MtrunA17_Chr5g0404981 40.282 355 137 11 1 296 51 389 2.70e-50 171
Msa0647180 MtrunA17_Chr3g0140331 38.406 276 120 9 36 281 67 322 4.47e-45 156
Msa0647180 MtrunA17_Chr8g0340401 38.869 283 113 9 39 281 33 295 2.26e-43 151
Msa0647180 MtrunA17_Chr1g0146231 34.921 315 141 12 15 281 5 303 1.09e-42 149
Msa0647180 MtrunA17_Chr1g0199671 75.714 70 17 0 207 276 237 306 1.33e-34 128
Msa0647180 MtrunA17_Chr6g0461591 81.538 65 12 0 212 276 192 256 2.08e-34 125
Msa0647180 MtrunA17_Chr7g0253101 80.000 65 13 0 212 276 188 252 2.24e-33 123
Msa0647180 MtrunA17_Chr1g0213161 67.532 77 25 0 212 288 152 228 2.84e-33 122
Msa0647180 MtrunA17_Chr1g0169431 76.471 68 16 0 212 279 172 239 8.18e-33 121
Msa0647180 MtrunA17_Chr2g0326771 62.791 86 30 1 191 276 197 280 2.54e-32 121
Msa0647180 MtrunA17_Chr4g0028961 73.134 67 18 0 212 278 232 298 3.70e-32 121
Msa0647180 MtrunA17_Chr5g0395391 68.571 70 22 0 212 281 270 339 1.40e-29 114
Msa0647180 MtrunA17_Chr5g0395391 59.036 83 28 1 199 275 149 231 2.99e-26 105
Msa0647180 MtrunA17_Chr7g0232671 57.143 63 27 0 211 273 186 248 1.72e-20 88.6
Msa0647180 MtrunA17_Chr7g0232701 53.968 63 29 0 211 273 72 134 7.17e-19 81.3
Msa0647180 MtrunA17_Chr7g0232681 31.868 182 107 5 105 273 16 193 4.94e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647180 AT4G36240.1 47.082 257 90 10 40 282 10 234 1.40e-56 182
Msa0647180 AT5G66320.2 35.838 346 139 10 8 291 5 329 2.41e-51 172
Msa0647180 AT5G66320.1 35.838 346 139 10 8 291 5 329 2.41e-51 172
Msa0647180 AT4G34680.1 41.034 290 114 11 6 283 7 251 2.03e-49 165
Msa0647180 AT4G34680.2 41.034 290 114 11 6 283 7 251 2.03e-49 165
Msa0647180 AT5G25830.1 38.047 297 108 12 40 281 13 288 1.49e-44 154
Msa0647180 AT3G60530.1 47.778 180 73 5 112 283 63 229 2.33e-43 149
Msa0647180 AT4G32890.1 36.331 278 115 11 39 281 16 266 4.85e-43 150
Msa0647180 AT2G45050.1 44.845 194 73 4 112 281 65 248 5.01e-43 148
Msa0647180 AT3G51080.1 69.231 91 22 2 212 296 221 311 2.52e-38 137
Msa0647180 AT3G24050.1 64.706 85 29 1 197 280 178 262 1.05e-33 124
Msa0647180 AT3G54810.1 75.000 68 17 0 212 279 229 296 3.82e-33 124
Msa0647180 AT3G54810.2 75.000 68 17 0 212 279 229 296 3.82e-33 124
Msa0647180 AT1G08010.2 72.464 69 19 0 212 280 220 288 3.59e-32 121
Msa0647180 AT1G08010.1 72.464 69 19 0 212 280 220 288 3.59e-32 121
Msa0647180 AT1G08010.3 72.464 69 19 0 212 280 220 288 3.59e-32 121
Msa0647180 AT1G08000.2 71.014 69 20 0 212 280 218 286 2.77e-30 116
Msa0647180 AT1G08000.1 71.014 69 20 0 212 280 218 286 2.77e-30 116
Msa0647180 AT3G45170.1 60.274 73 29 0 214 286 117 189 9.60e-27 104
Msa0647180 AT2G28340.1 63.077 65 24 0 214 278 193 257 1.64e-24 100

Find 121 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAACTGCACTGAGAAAA+TGG 0.161694 4_3:-53152303 None:intergenic
CTTCTTGTCTTGGTTGTTCT+AGG 0.195513 4_3:-53151734 None:intergenic
AGCCCCACCCGTTTGGGCTT+CGG 0.226880 4_3:-53151822 None:intergenic
GCCCCACCCGTTTGGGCTTC+GGG 0.232140 4_3:-53151821 None:intergenic
GGCCGATGATGTTGCGGATT+TGG 0.241470 4_3:+53151577 Msa0647180:intron
TAAATACCAACTTGAATAAA+TGG 0.261771 4_3:-53152396 None:intergenic
GAACAGCCACCGTAAGGTTT+TGG 0.270098 4_3:+53152018 Msa0647180:CDS
GAGGTGGATGAACCGGTTTC+CGG 0.310815 4_3:+53152058 Msa0647180:CDS
GGTTCGGCCCGGGCCTGAAC+TGG 0.312951 4_3:-53151653 None:intergenic
CGAAACAAGCGTTGAGGTAT+TGG 0.323623 4_3:-53150715 None:intergenic
TGCCGGTGGTTTAGCAGTTC+CGG 0.331211 4_3:+53151294 Msa0647180:CDS
GAAACTGAGCCCCACCCGTT+TGG 0.331959 4_3:-53151829 None:intergenic
TCTTTGCTGAAAAGAGTATA+GGG 0.337151 4_3:-53151784 None:intergenic
CAAGAGAGTTTCCTTTGGTT+TGG 0.341415 4_3:-53150755 None:intergenic
TCTCTTCACAAATTGTTTGT+TGG 0.346081 4_3:-53151015 None:intergenic
AAACTGAGCCCCACCCGTTT+GGG 0.350163 4_3:-53151828 None:intergenic
CTTCTTCTTCTTCCTCCTCC+TGG 0.352825 4_3:-53151156 None:intergenic
GTGAACCAACTGGTCTGAAC+CGG 0.355460 4_3:+53152174 Msa0647180:three_prime_UTR
CTCTCTATTGTATCCAGTTC+AGG 0.364580 4_3:+53151640 Msa0647180:CDS
AACCGGTTTCCGGTCTGAAC+CGG 0.370991 4_3:+53152068 Msa0647180:CDS
GCATTGGTTGGGCCCGGTCT+AGG 0.372639 4_3:-53151680 None:intergenic
ACAGTTGGGCCTTCTTGTCT+TGG 0.379924 4_3:-53151744 None:intergenic
GTTGGGCCCGGTCTAGGTTC+CGG 0.399228 4_3:-53151674 None:intergenic
TAAGGCAGGTAACGGAGATT+AGG 0.403308 4_3:+53152250 Msa0647180:three_prime_UTR
TAGATTAGCTGATTAGATAC+TGG 0.405597 4_3:+53152152 Msa0647180:three_prime_UTR
AGTTCAGGCCCGGGCCGAAC+CGG 0.407384 4_3:+53151655 Msa0647180:CDS
GTCTAGGTTCCGGTTCGGCC+CGG 0.414385 4_3:-53151664 None:intergenic
GGCCGAACCGGAACCTAGAC+CGG 0.414860 4_3:+53151667 Msa0647180:CDS
TTCTTTGCTGAAAAGAGTAT+AGG 0.416988 4_3:-53151785 None:intergenic
AACGCAAACAACGTTGTTGT+CGG 0.417578 4_3:+53151049 Msa0647180:CDS
TTTGGAAATGAGGCGGAGGA+AGG 0.432787 4_3:+53152036 Msa0647180:CDS
TATGTAACGCTTGTGGTGTT+CGG 0.433641 4_3:+53151924 Msa0647180:CDS
AGAAATAGTCAATGATTTAG+TGG 0.433775 4_3:+53152208 Msa0647180:three_prime_UTR
GAATTTCAACATGGTTCTGT+TGG 0.444517 4_3:+53151115 Msa0647180:CDS
TATTGTATCCAGTTCAGGCC+CGG 0.446736 4_3:+53151645 Msa0647180:CDS
GGAATGGGTGTCTCACTTTG+TGG 0.449579 4_3:+53151598 Msa0647180:CDS
AATGAGGCGGAGGAAGGAGG+TGG 0.451531 4_3:+53152042 Msa0647180:CDS
ATCCGGTTCAGACCGGAAAC+CGG 0.452815 4_3:-53152070 None:intergenic
GAGGAAGGAGGTGGATGAAC+CGG 0.452883 4_3:+53152051 Msa0647180:CDS
TCTAGGTTCCGGTTCGGCCC+GGG 0.468440 4_3:-53151663 None:intergenic
ATAGATTCTGTCCTCAAGCT+TGG 0.468461 4_3:-53150989 None:intergenic
GCCTCATTTCCAAAACCTTA+CGG 0.469337 4_3:-53152027 None:intergenic
TTAGATACTGGTGAACCAAC+TGG 0.470608 4_3:+53152164 Msa0647180:three_prime_UTR
ATTAACTGCACTGAGAAAAT+GGG 0.471694 4_3:-53152302 None:intergenic
AACCGCAAGAGAGTTTCCTT+TGG 0.471900 4_3:-53150760 None:intergenic
TTCTGCGGATTATAGAGAGC+TGG 0.472534 4_3:-53151709 None:intergenic
TCTTCGCCATTTATTCAAGT+TGG 0.475612 4_3:+53152390 Msa0647180:three_prime_UTR
CGGTCTGAACCGGATTCAAA+TGG 0.475660 4_3:+53152078 Msa0647180:CDS
ATGATGTTGCGGATTTGGAA+TGG 0.479723 4_3:+53151582 Msa0647180:CDS
AACTCGTGACCATTTGAATC+CGG 0.481371 4_3:-53152087 None:intergenic
CAGTGGAGAGCTGGTCCGCT+TGG 0.483307 4_3:+53151890 Msa0647180:CDS
GGAGTCAGACTCGCCGTCTC+CGG 0.485968 4_3:-53151266 None:intergenic
TGTGGTGTTCGGTTTAAGTC+CGG 0.492368 4_3:+53151935 Msa0647180:CDS
GGATACAATAGAGAGAGTTC+TGG 0.493646 4_3:-53151632 None:intergenic
GCCCGAAGCCCAAACGGGTG+GGG 0.493923 4_3:+53151820 Msa0647180:CDS
AAAATCCACACGTTACAGTT+GGG 0.498357 4_3:-53151758 None:intergenic
TGATGAAGAGTGACAAAGAG+AGG 0.498438 4_3:-53150784 None:intergenic
TGATGTTGCGGATTTGGAAT+GGG 0.501793 4_3:+53151583 Msa0647180:CDS
GGAAATGAGGCGGAGGAAGG+AGG 0.505698 4_3:+53152039 Msa0647180:CDS
GCCCGGTCTAGGTTCCGGTT+CGG 0.510484 4_3:-53151669 None:intergenic
AGACTCGCCGTCTCCGGCAC+CGG 0.510633 4_3:-53151260 None:intergenic
AGCTGGGAATAAGCATTGGT+TGG 0.510903 4_3:-53151692 None:intergenic
GTGCATGACTCTCTATGAGA+TGG 0.515960 4_3:+53150582 Msa0647180:five_prime_UTR
TTCTCAGGCCGATGATGTTG+CGG 0.519029 4_3:+53151571 Msa0647180:intron
GGTTTGGAAGCACTGAAATG+AGG 0.521338 4_3:-53150739 None:intergenic
AAAAGAAATTGATGTTTACC+AGG 0.530934 4_3:+53151138 Msa0647180:CDS
GCTGGGAATAAGCATTGGTT+GGG 0.531676 4_3:-53151691 None:intergenic
AAAACGCCACAGTGGAGAGC+TGG 0.532352 4_3:+53151881 Msa0647180:CDS
AATTGATGTTTACCAGGAGG+AGG 0.533216 4_3:+53151144 Msa0647180:CDS
GTTTGGAAGCACTGAAATGA+GGG 0.537345 4_3:-53150738 None:intergenic
TGCATGCAGGTCTATACTCC+GGG 0.538197 4_3:-53151967 None:intergenic
TTCCAAATCCGCAACATCAT+CGG 0.540001 4_3:-53151579 None:intergenic
AGCCCGAAGCCCAAACGGGT+GGG 0.541657 4_3:+53151819 Msa0647180:CDS
GAATAAGCATTGGTTGGGCC+CGG 0.542060 4_3:-53151686 None:intergenic
GTGATAGTGGTAACTTGGTA+AGG 0.542565 4_3:+53152128 Msa0647180:three_prime_UTR
ATTGTATCCAGTTCAGGCCC+GGG 0.543140 4_3:+53151646 Msa0647180:CDS
AGAACGTGATAGTGGTAACT+TGG 0.546604 4_3:+53152123 Msa0647180:three_prime_UTR
AGAGAGCTGGGAATAAGCAT+TGG 0.549150 4_3:-53151696 None:intergenic
TGAACCAACTGGTCTGAACC+GGG 0.550403 4_3:+53152175 Msa0647180:three_prime_UTR
CACCGGAACTGCTAAACCAC+CGG 0.551898 4_3:-53151296 None:intergenic
GCCGAACCGGAACCTAGACC+GGG 0.552879 4_3:+53151668 Msa0647180:CDS
TCTGCGGATTATAGAGAGCT+GGG 0.553907 4_3:-53151708 None:intergenic
ATTTGTTGAGAACGTGATAG+TGG 0.554949 4_3:+53152115 Msa0647180:three_prime_UTR
CATTTGAATCCGGTTCAGAC+CGG 0.555998 4_3:-53152077 None:intergenic
GCTGTTCGAATGAATTTCAC+CGG 0.556294 4_3:-53152002 None:intergenic
AAGCCCGAAGCCCAAACGGG+TGG 0.557944 4_3:+53151818 Msa0647180:CDS
TTTCAGTGCTTCCAAACCAA+AGG 0.559065 4_3:+53150744 Msa0647180:five_prime_UTR
TGCATGACTCTCTATGAGAT+GGG 0.572735 4_3:+53150583 Msa0647180:five_prime_UTR
TCCGGCACCGGAAAATGTTG+TGG 0.574032 4_3:-53151248 None:intergenic
TCATTCGAACAGCCACCGTA+AGG 0.576237 4_3:+53152012 Msa0647180:CDS
AGTGACTAGTCAGCTAAGGC+AGG 0.578356 4_3:+53152236 Msa0647180:three_prime_UTR
CTGCATGCAGGTCTATACTC+CGG 0.578551 4_3:-53151968 None:intergenic
AGTGAGTGACTAGTCAGCTA+AGG 0.581255 4_3:+53152232 Msa0647180:three_prime_UTR
CTAGAACAACCAAGACAAGA+AGG 0.581886 4_3:+53151735 Msa0647180:CDS
ACCATGTTGAAATTCACCGT+TGG 0.582797 4_3:-53151107 None:intergenic
ATACTCCGGGAAAAGCCGAC+CGG 0.594686 4_3:-53151954 None:intergenic
AAAACCCGGTTCAGACCAGT+TGG 0.597362 4_3:-53152179 None:intergenic
TGGTTGTTCTAGGCTTTCTG+CGG 0.603627 4_3:-53151724 None:intergenic
GAAAACGTCGGACTGCATGC+AGG 0.603890 4_3:-53151980 None:intergenic
TAGTCAGCTAAGGCAGGTAA+CGG 0.605189 4_3:+53152242 Msa0647180:three_prime_UTR
AACCAAAGGAAACTCTCTTG+CGG 0.609093 4_3:+53150758 Msa0647180:five_prime_UTR
AATTATTCAACAAAGTTCAG+CGG 0.611078 4_3:+53152454 Msa0647180:three_prime_UTR
AAACATGGAAGTTGTTGTAG+CGG 0.614309 4_3:+53150955 Msa0647180:exon
TCGTTCATGTTCAGAACCTG+AGG 0.628083 4_3:-53151200 None:intergenic
TTCATGTTCAGAACCTGAGG+TGG 0.629594 4_3:-53151197 None:intergenic
TACTACTATAGTATAAGTCT+AGG 0.631004 4_3:+53152343 Msa0647180:three_prime_UTR
GTGTTCGGTTTAAGTCCGGT+CGG 0.631814 4_3:+53151939 Msa0647180:CDS
AAATTTAGTAGTAGTACTAG+TGG 0.641874 4_3:+53150607 Msa0647180:five_prime_UTR
TCCAACGGTGAATTTCAACA+TGG 0.652718 4_3:+53151106 Msa0647180:CDS
GAAGGCCCAACTGTAACGTG+TGG 0.654146 4_3:+53151753 Msa0647180:CDS
AAAACACTATGTAACGCTTG+TGG 0.656575 4_3:+53151917 Msa0647180:CDS
TGAATTTCACCGGAAAACGT+CGG 0.667076 4_3:-53151992 None:intergenic
AGAAATTGATGTTTACCAGG+AGG 0.667546 4_3:+53151141 Msa0647180:CDS
AAGCGTTGAAACCAAGCTTG+AGG 0.681951 4_3:+53150978 Msa0647180:CDS
TCATTTCCAAAACCTTACGG+TGG 0.687073 4_3:-53152024 None:intergenic
TGCATGTATGATGCATGTGA+CGG 0.689090 4_3:+53152499 Msa0647180:three_prime_UTR
GTATGATGCATGTGACGGTG+CGG 0.696333 4_3:+53152504 Msa0647180:three_prime_UTR
AGCGGACCAGCTCTCCACTG+TGG 0.697012 4_3:-53151887 None:intergenic
TGAGGGCGAAACAAGCGTTG+AGG 0.700340 4_3:-53150721 None:intergenic
ATGTTCAGAAAACGCCACAG+TGG 0.715931 4_3:+53151873 Msa0647180:CDS
GTGGGGCTCAGTTTCAACGA+CGG 0.724625 4_3:+53151837 Msa0647180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCACTTTTATTTTATTTATC+AGG + chr4_3:53150804-53150823 Msa0647180:five_prime_UTR 15.0%
!!! TCACTTTTATTTTATTTATC+AGG + chr4_3:53150804-53150823 Msa0647180:five_prime_UTR 15.0%
!!! AATAATAGTTTGAGTTTTGT+AGG + chr4_3:53150924-53150943 Msa0647180:intron 20.0%
!! TAAATACCAACTTGAATAAA+TGG - chr4_3:53152399-53152418 None:intergenic 20.0%
!!! AATAATAGTTTGAGTTTTGT+AGG + chr4_3:53150924-53150943 Msa0647180:intron 20.0%
!! TAAATACCAACTTGAATAAA+TGG - chr4_3:53152399-53152418 None:intergenic 20.0%
! AAATTTAGTAGTAGTACTAG+TGG + chr4_3:53150607-53150626 Msa0647180:five_prime_UTR 25.0%
! TTGTAGGAGAAAAAAAAACA+TGG + chr4_3:53150940-53150959 Msa0647180:intron 25.0%
! AAAAGAAATTGATGTTTACC+AGG + chr4_3:53151138-53151157 Msa0647180:CDS 25.0%
!! ATATAGCTAATAACTCGTTT+TGG + chr4_3:53151539-53151558 Msa0647180:intron 25.0%
!!! TTTTGGTTTTCTTAATTCTC+AGG + chr4_3:53151556-53151575 Msa0647180:intron 25.0%
! AGAAATAGTCAATGATTTAG+TGG + chr4_3:53152208-53152227 Msa0647180:three_prime_UTR 25.0%
! TACTACTATAGTATAAGTCT+AGG + chr4_3:53152343-53152362 Msa0647180:three_prime_UTR 25.0%
!!! ATTTGCTTGCATATTTTGAT+TGG + chr4_3:53152426-53152445 Msa0647180:three_prime_UTR 25.0%
! AATTATTCAACAAAGTTCAG+CGG + chr4_3:53152454-53152473 Msa0647180:three_prime_UTR 25.0%
! AAATTTAGTAGTAGTACTAG+TGG + chr4_3:53150607-53150626 Msa0647180:five_prime_UTR 25.0%
! TTGTAGGAGAAAAAAAAACA+TGG + chr4_3:53150940-53150959 Msa0647180:intron 25.0%
! AAAAGAAATTGATGTTTACC+AGG + chr4_3:53151138-53151157 Msa0647180:CDS 25.0%
!! ATATAGCTAATAACTCGTTT+TGG + chr4_3:53151539-53151558 Msa0647180:intron 25.0%
!!! TTTTGGTTTTCTTAATTCTC+AGG + chr4_3:53151556-53151575 Msa0647180:intron 25.0%
! AGAAATAGTCAATGATTTAG+TGG + chr4_3:53152208-53152227 Msa0647180:three_prime_UTR 25.0%
! TACTACTATAGTATAAGTCT+AGG + chr4_3:53152343-53152362 Msa0647180:three_prime_UTR 25.0%
!!! ATTTGCTTGCATATTTTGAT+TGG + chr4_3:53152426-53152445 Msa0647180:three_prime_UTR 25.0%
! AATTATTCAACAAAGTTCAG+CGG + chr4_3:53152454-53152473 Msa0647180:three_prime_UTR 25.0%
TCTCTTCACAAATTGTTTGT+TGG - chr4_3:53151018-53151037 None:intergenic 30.0%
! TCAAATTCCACAACATTTTC+CGG + chr4_3:53151241-53151260 Msa0647180:CDS 30.0%
TTGCATGATTAAAGATTCAC+CGG - chr4_3:53151316-53151335 None:intergenic 30.0%
AATTCATTACCTTTGTAGCA+TGG + chr4_3:53151370-53151389 Msa0647180:intron 30.0%
! TCTTTGCTGAAAAGAGTATA+GGG - chr4_3:53151787-53151806 None:intergenic 30.0%
! TTCTTTGCTGAAAAGAGTAT+AGG - chr4_3:53151788-53151807 None:intergenic 30.0%
! TAGATTAGCTGATTAGATAC+TGG + chr4_3:53152152-53152171 Msa0647180:three_prime_UTR 30.0%
! CTATTTCTCCAAAAAAAACC+CGG - chr4_3:53152196-53152215 None:intergenic 30.0%
ATTAACTGCACTGAGAAAAT+GGG - chr4_3:53152305-53152324 None:intergenic 30.0%
AATTAACTGCACTGAGAAAA+TGG - chr4_3:53152306-53152325 None:intergenic 30.0%
TCTCTTCACAAATTGTTTGT+TGG - chr4_3:53151018-53151037 None:intergenic 30.0%
! TCAAATTCCACAACATTTTC+CGG + chr4_3:53151241-53151260 Msa0647180:CDS 30.0%
TTGCATGATTAAAGATTCAC+CGG - chr4_3:53151316-53151335 None:intergenic 30.0%
AATTCATTACCTTTGTAGCA+TGG + chr4_3:53151370-53151389 Msa0647180:intron 30.0%
! TCTTTGCTGAAAAGAGTATA+GGG - chr4_3:53151787-53151806 None:intergenic 30.0%
! TTCTTTGCTGAAAAGAGTAT+AGG - chr4_3:53151788-53151807 None:intergenic 30.0%
! TAGATTAGCTGATTAGATAC+TGG + chr4_3:53152152-53152171 Msa0647180:three_prime_UTR 30.0%
! CTATTTCTCCAAAAAAAACC+CGG - chr4_3:53152196-53152215 None:intergenic 30.0%
ATTAACTGCACTGAGAAAAT+GGG - chr4_3:53152305-53152324 None:intergenic 30.0%
AATTAACTGCACTGAGAAAA+TGG - chr4_3:53152306-53152325 None:intergenic 30.0%
AAACATGGAAGTTGTTGTAG+CGG + chr4_3:53150955-53150974 Msa0647180:exon 35.0%
!! GACTTGCTTGATTTTTCCAA+CGG + chr4_3:53151091-53151110 Msa0647180:CDS 35.0%
! GAATTTCAACATGGTTCTGT+TGG + chr4_3:53151115-53151134 Msa0647180:CDS 35.0%
AGAAATTGATGTTTACCAGG+AGG + chr4_3:53151141-53151160 Msa0647180:CDS 35.0%
TATCATTAGTGTCATGTGTC+CGG + chr4_3:53151483-53151502 Msa0647180:intron 35.0%
AAAATCCACACGTTACAGTT+GGG - chr4_3:53151761-53151780 None:intergenic 35.0%
AAAAATCCACACGTTACAGT+TGG - chr4_3:53151762-53151781 None:intergenic 35.0%
! CAAGCGTTACATAGTGTTTT+CGG - chr4_3:53151917-53151936 None:intergenic 35.0%
AAAACACTATGTAACGCTTG+TGG + chr4_3:53151917-53151936 Msa0647180:CDS 35.0%
! ATTTGTTGAGAACGTGATAG+TGG + chr4_3:53152115-53152134 Msa0647180:three_prime_UTR 35.0%
TCTTCGCCATTTATTCAAGT+TGG + chr4_3:53152390-53152409 Msa0647180:three_prime_UTR 35.0%
AAACATGGAAGTTGTTGTAG+CGG + chr4_3:53150955-53150974 Msa0647180:exon 35.0%
!! GACTTGCTTGATTTTTCCAA+CGG + chr4_3:53151091-53151110 Msa0647180:CDS 35.0%
! GAATTTCAACATGGTTCTGT+TGG + chr4_3:53151115-53151134 Msa0647180:CDS 35.0%
AGAAATTGATGTTTACCAGG+AGG + chr4_3:53151141-53151160 Msa0647180:CDS 35.0%
TATCATTAGTGTCATGTGTC+CGG + chr4_3:53151483-53151502 Msa0647180:intron 35.0%
AAAATCCACACGTTACAGTT+GGG - chr4_3:53151761-53151780 None:intergenic 35.0%
AAAAATCCACACGTTACAGT+TGG - chr4_3:53151762-53151781 None:intergenic 35.0%
! CAAGCGTTACATAGTGTTTT+CGG - chr4_3:53151917-53151936 None:intergenic 35.0%
AAAACACTATGTAACGCTTG+TGG + chr4_3:53151917-53151936 Msa0647180:CDS 35.0%
! ATTTGTTGAGAACGTGATAG+TGG + chr4_3:53152115-53152134 Msa0647180:three_prime_UTR 35.0%
TCTTCGCCATTTATTCAAGT+TGG + chr4_3:53152390-53152409 Msa0647180:three_prime_UTR 35.0%
TGCATGACTCTCTATGAGAT+GGG + chr4_3:53150583-53150602 Msa0647180:five_prime_UTR 40.0%
!! GTTTGGAAGCACTGAAATGA+GGG - chr4_3:53150741-53150760 None:intergenic 40.0%
TTTCAGTGCTTCCAAACCAA+AGG + chr4_3:53150744-53150763 Msa0647180:five_prime_UTR 40.0%
CAAGAGAGTTTCCTTTGGTT+TGG - chr4_3:53150758-53150777 None:intergenic 40.0%
AACCAAAGGAAACTCTCTTG+CGG + chr4_3:53150758-53150777 Msa0647180:five_prime_UTR 40.0%
TGATGAAGAGTGACAAAGAG+AGG - chr4_3:53150787-53150806 None:intergenic 40.0%
ATAGATTCTGTCCTCAAGCT+TGG - chr4_3:53150992-53151011 None:intergenic 40.0%
AACGCAAACAACGTTGTTGT+CGG + chr4_3:53151049-53151068 Msa0647180:CDS 40.0%
TCCAACGGTGAATTTCAACA+TGG + chr4_3:53151106-53151125 Msa0647180:CDS 40.0%
ACCATGTTGAAATTCACCGT+TGG - chr4_3:53151110-53151129 None:intergenic 40.0%
AATTGATGTTTACCAGGAGG+AGG + chr4_3:53151144-53151163 Msa0647180:CDS 40.0%
CAGAAATGTCCATGCTACAA+AGG - chr4_3:53151382-53151401 None:intergenic 40.0%
TTCCAAATCCGCAACATCAT+CGG - chr4_3:53151582-53151601 None:intergenic 40.0%
ATGATGTTGCGGATTTGGAA+TGG + chr4_3:53151582-53151601 Msa0647180:CDS 40.0%
! TGATGTTGCGGATTTGGAAT+GGG + chr4_3:53151583-53151602 Msa0647180:CDS 40.0%
GGATACAATAGAGAGAGTTC+TGG - chr4_3:53151635-53151654 None:intergenic 40.0%
CTCTCTATTGTATCCAGTTC+AGG + chr4_3:53151640-53151659 Msa0647180:CDS 40.0%
CTTCTTGTCTTGGTTGTTCT+AGG - chr4_3:53151737-53151756 None:intergenic 40.0%
CTAGAACAACCAAGACAAGA+AGG + chr4_3:53151735-53151754 Msa0647180:CDS 40.0%
! TCTTTTCAGCAAAGAAGCAG+AGG + chr4_3:53151792-53151811 Msa0647180:CDS 40.0%
TATGTAACGCTTGTGGTGTT+CGG + chr4_3:53151924-53151943 Msa0647180:CDS 40.0%
TGAATTTCACCGGAAAACGT+CGG - chr4_3:53151995-53152014 None:intergenic 40.0%
GCTGTTCGAATGAATTTCAC+CGG - chr4_3:53152005-53152024 None:intergenic 40.0%
TCATTTCCAAAACCTTACGG+TGG - chr4_3:53152027-53152046 None:intergenic 40.0%
!!! ACCGTAAGGTTTTGGAAATG+AGG + chr4_3:53152026-53152045 Msa0647180:CDS 40.0%
GCCTCATTTCCAAAACCTTA+CGG - chr4_3:53152030-53152049 None:intergenic 40.0%
!!! GTAAGGTTTTGGAAATGAGG+CGG + chr4_3:53152029-53152048 Msa0647180:CDS 40.0%
AACTCGTGACCATTTGAATC+CGG - chr4_3:53152090-53152109 None:intergenic 40.0%
!! AGAACGTGATAGTGGTAACT+TGG + chr4_3:53152123-53152142 Msa0647180:three_prime_UTR 40.0%
!! GTGATAGTGGTAACTTGGTA+AGG + chr4_3:53152128-53152147 Msa0647180:three_prime_UTR 40.0%
TTAGATACTGGTGAACCAAC+TGG + chr4_3:53152164-53152183 Msa0647180:three_prime_UTR 40.0%
TGCATGTATGATGCATGTGA+CGG + chr4_3:53152499-53152518 Msa0647180:three_prime_UTR 40.0%
TGCATGACTCTCTATGAGAT+GGG + chr4_3:53150583-53150602 Msa0647180:five_prime_UTR 40.0%
!! GTTTGGAAGCACTGAAATGA+GGG - chr4_3:53150741-53150760 None:intergenic 40.0%
TTTCAGTGCTTCCAAACCAA+AGG + chr4_3:53150744-53150763 Msa0647180:five_prime_UTR 40.0%
CAAGAGAGTTTCCTTTGGTT+TGG - chr4_3:53150758-53150777 None:intergenic 40.0%
AACCAAAGGAAACTCTCTTG+CGG + chr4_3:53150758-53150777 Msa0647180:five_prime_UTR 40.0%
TGATGAAGAGTGACAAAGAG+AGG - chr4_3:53150787-53150806 None:intergenic 40.0%
ATAGATTCTGTCCTCAAGCT+TGG - chr4_3:53150992-53151011 None:intergenic 40.0%
AACGCAAACAACGTTGTTGT+CGG + chr4_3:53151049-53151068 Msa0647180:CDS 40.0%
TCCAACGGTGAATTTCAACA+TGG + chr4_3:53151106-53151125 Msa0647180:CDS 40.0%
ACCATGTTGAAATTCACCGT+TGG - chr4_3:53151110-53151129 None:intergenic 40.0%
AATTGATGTTTACCAGGAGG+AGG + chr4_3:53151144-53151163 Msa0647180:CDS 40.0%
CAGAAATGTCCATGCTACAA+AGG - chr4_3:53151382-53151401 None:intergenic 40.0%
TTCCAAATCCGCAACATCAT+CGG - chr4_3:53151582-53151601 None:intergenic 40.0%
ATGATGTTGCGGATTTGGAA+TGG + chr4_3:53151582-53151601 Msa0647180:CDS 40.0%
! TGATGTTGCGGATTTGGAAT+GGG + chr4_3:53151583-53151602 Msa0647180:CDS 40.0%
GGATACAATAGAGAGAGTTC+TGG - chr4_3:53151635-53151654 None:intergenic 40.0%
CTCTCTATTGTATCCAGTTC+AGG + chr4_3:53151640-53151659 Msa0647180:CDS 40.0%
CTTCTTGTCTTGGTTGTTCT+AGG - chr4_3:53151737-53151756 None:intergenic 40.0%
CTAGAACAACCAAGACAAGA+AGG + chr4_3:53151735-53151754 Msa0647180:CDS 40.0%
! TCTTTTCAGCAAAGAAGCAG+AGG + chr4_3:53151792-53151811 Msa0647180:CDS 40.0%
TATGTAACGCTTGTGGTGTT+CGG + chr4_3:53151924-53151943 Msa0647180:CDS 40.0%
TGAATTTCACCGGAAAACGT+CGG - chr4_3:53151995-53152014 None:intergenic 40.0%
GCTGTTCGAATGAATTTCAC+CGG - chr4_3:53152005-53152024 None:intergenic 40.0%
TCATTTCCAAAACCTTACGG+TGG - chr4_3:53152027-53152046 None:intergenic 40.0%
!!! ACCGTAAGGTTTTGGAAATG+AGG + chr4_3:53152026-53152045 Msa0647180:CDS 40.0%
GCCTCATTTCCAAAACCTTA+CGG - chr4_3:53152030-53152049 None:intergenic 40.0%
!!! GTAAGGTTTTGGAAATGAGG+CGG + chr4_3:53152029-53152048 Msa0647180:CDS 40.0%
AACTCGTGACCATTTGAATC+CGG - chr4_3:53152090-53152109 None:intergenic 40.0%
!! AGAACGTGATAGTGGTAACT+TGG + chr4_3:53152123-53152142 Msa0647180:three_prime_UTR 40.0%
!! GTGATAGTGGTAACTTGGTA+AGG + chr4_3:53152128-53152147 Msa0647180:three_prime_UTR 40.0%
TTAGATACTGGTGAACCAAC+TGG + chr4_3:53152164-53152183 Msa0647180:three_prime_UTR 40.0%
TGCATGTATGATGCATGTGA+CGG + chr4_3:53152499-53152518 Msa0647180:three_prime_UTR 40.0%
GTGCATGACTCTCTATGAGA+TGG + chr4_3:53150582-53150601 Msa0647180:five_prime_UTR 45.0%
!! CGAAACAAGCGTTGAGGTAT+TGG - chr4_3:53150718-53150737 None:intergenic 45.0%
!! GGTTTGGAAGCACTGAAATG+AGG - chr4_3:53150742-53150761 None:intergenic 45.0%
AACCGCAAGAGAGTTTCCTT+TGG - chr4_3:53150763-53150782 None:intergenic 45.0%
!! AAGCGTTGAAACCAAGCTTG+AGG + chr4_3:53150978-53150997 Msa0647180:CDS 45.0%
GAAAAAAACAGCACCACCTC+AGG + chr4_3:53151184-53151203 Msa0647180:CDS 45.0%
TTCATGTTCAGAACCTGAGG+TGG - chr4_3:53151200-53151219 None:intergenic 45.0%
TCGTTCATGTTCAGAACCTG+AGG - chr4_3:53151203-53151222 None:intergenic 45.0%
!! GAGTCTGACTCCATTTTTGC+CGG + chr4_3:53151277-53151296 Msa0647180:CDS 45.0%
TGCTAAACCACCGGCAAAAA+TGG - chr4_3:53151290-53151309 None:intergenic 45.0%
ATTAGTGTCATGTGTCCGGT+CGG + chr4_3:53151487-53151506 Msa0647180:intron 45.0%
TATTGTATCCAGTTCAGGCC+CGG + chr4_3:53151645-53151664 Msa0647180:CDS 45.0%
!! GCTGGGAATAAGCATTGGTT+GGG - chr4_3:53151694-53151713 None:intergenic 45.0%
!! AGCTGGGAATAAGCATTGGT+TGG - chr4_3:53151695-53151714 None:intergenic 45.0%
AGAGAGCTGGGAATAAGCAT+TGG - chr4_3:53151699-53151718 None:intergenic 45.0%
! TCTGCGGATTATAGAGAGCT+GGG - chr4_3:53151711-53151730 None:intergenic 45.0%
! TTCTGCGGATTATAGAGAGC+TGG - chr4_3:53151712-53151731 None:intergenic 45.0%
! TGGTTGTTCTAGGCTTTCTG+CGG - chr4_3:53151727-53151746 None:intergenic 45.0%
! ACTGTGGCGTTTTCTGAACA+TGG - chr4_3:53151874-53151893 None:intergenic 45.0%
ATGTTCAGAAAACGCCACAG+TGG + chr4_3:53151873-53151892 Msa0647180:CDS 45.0%
! CATAGTGTTTTCGGTCCAAG+CGG - chr4_3:53151908-53151927 None:intergenic 45.0%
TGTGGTGTTCGGTTTAAGTC+CGG + chr4_3:53151935-53151954 Msa0647180:CDS 45.0%
CATTTGAATCCGGTTCAGAC+CGG - chr4_3:53152080-53152099 None:intergenic 45.0%
!!! GGTCTGAACCGGGTTTTTTT+TGG + chr4_3:53152185-53152204 Msa0647180:three_prime_UTR 45.0%
! AGTGAGTGACTAGTCAGCTA+AGG + chr4_3:53152232-53152251 Msa0647180:three_prime_UTR 45.0%
TAGTCAGCTAAGGCAGGTAA+CGG + chr4_3:53152242-53152261 Msa0647180:three_prime_UTR 45.0%
!! TAAGGCAGGTAACGGAGATT+AGG + chr4_3:53152250-53152269 Msa0647180:three_prime_UTR 45.0%
GTGCATGACTCTCTATGAGA+TGG + chr4_3:53150582-53150601 Msa0647180:five_prime_UTR 45.0%
!! CGAAACAAGCGTTGAGGTAT+TGG - chr4_3:53150718-53150737 None:intergenic 45.0%
!! GGTTTGGAAGCACTGAAATG+AGG - chr4_3:53150742-53150761 None:intergenic 45.0%
AACCGCAAGAGAGTTTCCTT+TGG - chr4_3:53150763-53150782 None:intergenic 45.0%
!! AAGCGTTGAAACCAAGCTTG+AGG + chr4_3:53150978-53150997 Msa0647180:CDS 45.0%
GAAAAAAACAGCACCACCTC+AGG + chr4_3:53151184-53151203 Msa0647180:CDS 45.0%
TTCATGTTCAGAACCTGAGG+TGG - chr4_3:53151200-53151219 None:intergenic 45.0%
TCGTTCATGTTCAGAACCTG+AGG - chr4_3:53151203-53151222 None:intergenic 45.0%
!! GAGTCTGACTCCATTTTTGC+CGG + chr4_3:53151277-53151296 Msa0647180:CDS 45.0%
TGCTAAACCACCGGCAAAAA+TGG - chr4_3:53151290-53151309 None:intergenic 45.0%
ATTAGTGTCATGTGTCCGGT+CGG + chr4_3:53151487-53151506 Msa0647180:intron 45.0%
TATTGTATCCAGTTCAGGCC+CGG + chr4_3:53151645-53151664 Msa0647180:CDS 45.0%
!! GCTGGGAATAAGCATTGGTT+GGG - chr4_3:53151694-53151713 None:intergenic 45.0%
!! AGCTGGGAATAAGCATTGGT+TGG - chr4_3:53151695-53151714 None:intergenic 45.0%
AGAGAGCTGGGAATAAGCAT+TGG - chr4_3:53151699-53151718 None:intergenic 45.0%
! TCTGCGGATTATAGAGAGCT+GGG - chr4_3:53151711-53151730 None:intergenic 45.0%
! TTCTGCGGATTATAGAGAGC+TGG - chr4_3:53151712-53151731 None:intergenic 45.0%
! TGGTTGTTCTAGGCTTTCTG+CGG - chr4_3:53151727-53151746 None:intergenic 45.0%
! ACTGTGGCGTTTTCTGAACA+TGG - chr4_3:53151874-53151893 None:intergenic 45.0%
ATGTTCAGAAAACGCCACAG+TGG + chr4_3:53151873-53151892 Msa0647180:CDS 45.0%
! CATAGTGTTTTCGGTCCAAG+CGG - chr4_3:53151908-53151927 None:intergenic 45.0%
TGTGGTGTTCGGTTTAAGTC+CGG + chr4_3:53151935-53151954 Msa0647180:CDS 45.0%
CATTTGAATCCGGTTCAGAC+CGG - chr4_3:53152080-53152099 None:intergenic 45.0%
!!! GGTCTGAACCGGGTTTTTTT+TGG + chr4_3:53152185-53152204 Msa0647180:three_prime_UTR 45.0%
! AGTGAGTGACTAGTCAGCTA+AGG + chr4_3:53152232-53152251 Msa0647180:three_prime_UTR 45.0%
TAGTCAGCTAAGGCAGGTAA+CGG + chr4_3:53152242-53152261 Msa0647180:three_prime_UTR 45.0%
!! TAAGGCAGGTAACGGAGATT+AGG + chr4_3:53152250-53152269 Msa0647180:three_prime_UTR 45.0%
CTTCTTCTTCTTCCTCCTCC+TGG - chr4_3:53151159-53151178 None:intergenic 50.0%
! TCCACAACATTTTCCGGTGC+CGG + chr4_3:53151247-53151266 Msa0647180:CDS 50.0%
!! TCTGACTCCATTTTTGCCGG+TGG + chr4_3:53151280-53151299 Msa0647180:CDS 50.0%
TTCTCAGGCCGATGATGTTG+CGG + chr4_3:53151571-53151590 Msa0647180:intron 50.0%
GGAATGGGTGTCTCACTTTG+TGG + chr4_3:53151598-53151617 Msa0647180:CDS 50.0%
ATTGTATCCAGTTCAGGCCC+GGG + chr4_3:53151646-53151665 Msa0647180:CDS 50.0%
!! GAATAAGCATTGGTTGGGCC+CGG - chr4_3:53151689-53151708 None:intergenic 50.0%
ACAGTTGGGCCTTCTTGTCT+TGG - chr4_3:53151747-53151766 None:intergenic 50.0%
GAAAAAGCCCGAAGCCCAAA+CGG + chr4_3:53151814-53151833 Msa0647180:CDS 50.0%
AAAAAGCCCGAAGCCCAAAC+GGG + chr4_3:53151815-53151834 Msa0647180:CDS 50.0%
! GCGTTTTCTGAACATGGCAG+TGG - chr4_3:53151868-53151887 None:intergenic 50.0%
GTGTTCGGTTTAAGTCCGGT+CGG + chr4_3:53151939-53151958 Msa0647180:CDS 50.0%
TGCATGCAGGTCTATACTCC+GGG - chr4_3:53151970-53151989 None:intergenic 50.0%
CTGCATGCAGGTCTATACTC+CGG - chr4_3:53151971-53151990 None:intergenic 50.0%
TCATTCGAACAGCCACCGTA+AGG + chr4_3:53152012-53152031 Msa0647180:CDS 50.0%
! GAACAGCCACCGTAAGGTTT+TGG + chr4_3:53152018-53152037 Msa0647180:CDS 50.0%
!!! AGGTTTTGGAAATGAGGCGG+AGG + chr4_3:53152032-53152051 Msa0647180:CDS 50.0%
TTTGGAAATGAGGCGGAGGA+AGG + chr4_3:53152036-53152055 Msa0647180:CDS 50.0%
CGGTCTGAACCGGATTCAAA+TGG + chr4_3:53152078-53152097 Msa0647180:CDS 50.0%
! GTGAACCAACTGGTCTGAAC+CGG + chr4_3:53152174-53152193 Msa0647180:three_prime_UTR 50.0%
! TGAACCAACTGGTCTGAACC+GGG + chr4_3:53152175-53152194 Msa0647180:three_prime_UTR 50.0%
AAAACCCGGTTCAGACCAGT+TGG - chr4_3:53152182-53152201 None:intergenic 50.0%
! AGTGACTAGTCAGCTAAGGC+AGG + chr4_3:53152236-53152255 Msa0647180:three_prime_UTR 50.0%
GTATGATGCATGTGACGGTG+CGG + chr4_3:53152504-53152523 Msa0647180:three_prime_UTR 50.0%
TATGATGCATGTGACGGTGC+GGG + chr4_3:53152505-53152524 Msa0647180:three_prime_UTR 50.0%
CTTCTTCTTCTTCCTCCTCC+TGG - chr4_3:53151159-53151178 None:intergenic 50.0%
! TCCACAACATTTTCCGGTGC+CGG + chr4_3:53151247-53151266 Msa0647180:CDS 50.0%
!! TCTGACTCCATTTTTGCCGG+TGG + chr4_3:53151280-53151299 Msa0647180:CDS 50.0%
TTCTCAGGCCGATGATGTTG+CGG + chr4_3:53151571-53151590 Msa0647180:intron 50.0%
GGAATGGGTGTCTCACTTTG+TGG + chr4_3:53151598-53151617 Msa0647180:CDS 50.0%
ATTGTATCCAGTTCAGGCCC+GGG + chr4_3:53151646-53151665 Msa0647180:CDS 50.0%
!! GAATAAGCATTGGTTGGGCC+CGG - chr4_3:53151689-53151708 None:intergenic 50.0%
ACAGTTGGGCCTTCTTGTCT+TGG - chr4_3:53151747-53151766 None:intergenic 50.0%
GAAAAAGCCCGAAGCCCAAA+CGG + chr4_3:53151814-53151833 Msa0647180:CDS 50.0%
AAAAAGCCCGAAGCCCAAAC+GGG + chr4_3:53151815-53151834 Msa0647180:CDS 50.0%
! GCGTTTTCTGAACATGGCAG+TGG - chr4_3:53151868-53151887 None:intergenic 50.0%
GTGTTCGGTTTAAGTCCGGT+CGG + chr4_3:53151939-53151958 Msa0647180:CDS 50.0%
TGCATGCAGGTCTATACTCC+GGG - chr4_3:53151970-53151989 None:intergenic 50.0%
CTGCATGCAGGTCTATACTC+CGG - chr4_3:53151971-53151990 None:intergenic 50.0%
TCATTCGAACAGCCACCGTA+AGG + chr4_3:53152012-53152031 Msa0647180:CDS 50.0%
! GAACAGCCACCGTAAGGTTT+TGG + chr4_3:53152018-53152037 Msa0647180:CDS 50.0%
!!! AGGTTTTGGAAATGAGGCGG+AGG + chr4_3:53152032-53152051 Msa0647180:CDS 50.0%
TTTGGAAATGAGGCGGAGGA+AGG + chr4_3:53152036-53152055 Msa0647180:CDS 50.0%
CGGTCTGAACCGGATTCAAA+TGG + chr4_3:53152078-53152097 Msa0647180:CDS 50.0%
! GTGAACCAACTGGTCTGAAC+CGG + chr4_3:53152174-53152193 Msa0647180:three_prime_UTR 50.0%
! TGAACCAACTGGTCTGAACC+GGG + chr4_3:53152175-53152194 Msa0647180:three_prime_UTR 50.0%
AAAACCCGGTTCAGACCAGT+TGG - chr4_3:53152182-53152201 None:intergenic 50.0%
! AGTGACTAGTCAGCTAAGGC+AGG + chr4_3:53152236-53152255 Msa0647180:three_prime_UTR 50.0%
! TGAGGGCGAAACAAGCGTTG+AGG - chr4_3:53150724-53150743 None:intergenic 55.0%
! TCCGGCACCGGAAAATGTTG+TGG - chr4_3:53151251-53151270 None:intergenic 55.0%
!! ACATTTTCCGGTGCCGGAGA+CGG + chr4_3:53151253-53151272 Msa0647180:CDS 55.0%
TGCCGGTGGTTTAGCAGTTC+CGG + chr4_3:53151294-53151313 Msa0647180:CDS 55.0%
CACCGGAACTGCTAAACCAC+CGG - chr4_3:53151299-53151318 None:intergenic 55.0%
GACACGACACAAACACCGAC+CGG - chr4_3:53151505-53151524 None:intergenic 55.0%
GGCCGATGATGTTGCGGATT+TGG + chr4_3:53151577-53151596 Msa0647180:intron 55.0%
GAAGGCCCAACTGTAACGTG+TGG + chr4_3:53151753-53151772 Msa0647180:CDS 55.0%
AAACTGAGCCCCACCCGTTT+GGG - chr4_3:53151831-53151850 None:intergenic 55.0%
GTGGGGCTCAGTTTCAACGA+CGG + chr4_3:53151837-53151856 Msa0647180:CDS 55.0%
AAAACGCCACAGTGGAGAGC+TGG + chr4_3:53151881-53151900 Msa0647180:CDS 55.0%
!! TAAGTCCGGTCGGCTTTTCC+CGG + chr4_3:53151949-53151968 Msa0647180:CDS 55.0%
ATACTCCGGGAAAAGCCGAC+CGG - chr4_3:53151957-53151976 None:intergenic 55.0%
GAAAACGTCGGACTGCATGC+AGG - chr4_3:53151983-53152002 None:intergenic 55.0%
! GCATGCAGTCCGACGTTTTC+CGG + chr4_3:53151983-53152002 Msa0647180:CDS 55.0%
GAGGAAGGAGGTGGATGAAC+CGG + chr4_3:53152051-53152070 Msa0647180:CDS 55.0%
! GAGGTGGATGAACCGGTTTC+CGG + chr4_3:53152058-53152077 Msa0647180:CDS 55.0%
! AACCGGTTTCCGGTCTGAAC+CGG + chr4_3:53152068-53152087 Msa0647180:CDS 55.0%
ATCCGGTTCAGACCGGAAAC+CGG - chr4_3:53152073-53152092 None:intergenic 55.0%
! TGAGGGCGAAACAAGCGTTG+AGG - chr4_3:53150724-53150743 None:intergenic 55.0%
! TCCGGCACCGGAAAATGTTG+TGG - chr4_3:53151251-53151270 None:intergenic 55.0%
!! ACATTTTCCGGTGCCGGAGA+CGG + chr4_3:53151253-53151272 Msa0647180:CDS 55.0%
TGCCGGTGGTTTAGCAGTTC+CGG + chr4_3:53151294-53151313 Msa0647180:CDS 55.0%
CACCGGAACTGCTAAACCAC+CGG - chr4_3:53151299-53151318 None:intergenic 55.0%
GACACGACACAAACACCGAC+CGG - chr4_3:53151505-53151524 None:intergenic 55.0%
GGCCGATGATGTTGCGGATT+TGG + chr4_3:53151577-53151596 Msa0647180:intron 55.0%
GAAGGCCCAACTGTAACGTG+TGG + chr4_3:53151753-53151772 Msa0647180:CDS 55.0%
AAACTGAGCCCCACCCGTTT+GGG - chr4_3:53151831-53151850 None:intergenic 55.0%
GTGGGGCTCAGTTTCAACGA+CGG + chr4_3:53151837-53151856 Msa0647180:CDS 55.0%
AAAACGCCACAGTGGAGAGC+TGG + chr4_3:53151881-53151900 Msa0647180:CDS 55.0%
!! TAAGTCCGGTCGGCTTTTCC+CGG + chr4_3:53151949-53151968 Msa0647180:CDS 55.0%
ATACTCCGGGAAAAGCCGAC+CGG - chr4_3:53151957-53151976 None:intergenic 55.0%
GAAAACGTCGGACTGCATGC+AGG - chr4_3:53151983-53152002 None:intergenic 55.0%
! GCATGCAGTCCGACGTTTTC+CGG + chr4_3:53151983-53152002 Msa0647180:CDS 55.0%
GAGGAAGGAGGTGGATGAAC+CGG + chr4_3:53152051-53152070 Msa0647180:CDS 55.0%
! GAGGTGGATGAACCGGTTTC+CGG + chr4_3:53152058-53152077 Msa0647180:CDS 55.0%
! AACCGGTTTCCGGTCTGAAC+CGG + chr4_3:53152068-53152087 Msa0647180:CDS 55.0%
ATCCGGTTCAGACCGGAAAC+CGG - chr4_3:53152073-53152092 None:intergenic 55.0%
GAAACTGAGCCCCACCCGTT+TGG - chr4_3:53151832-53151851 None:intergenic 60.0%
GGAAATGAGGCGGAGGAAGG+AGG + chr4_3:53152039-53152058 Msa0647180:CDS 60.0%
AATGAGGCGGAGGAAGGAGG+TGG + chr4_3:53152042-53152061 Msa0647180:CDS 60.0%
GAAACTGAGCCCCACCCGTT+TGG - chr4_3:53151832-53151851 None:intergenic 60.0%
GGAAATGAGGCGGAGGAAGG+AGG + chr4_3:53152039-53152058 Msa0647180:CDS 60.0%
AATGAGGCGGAGGAAGGAGG+TGG + chr4_3:53152042-53152061 Msa0647180:CDS 60.0%
GGAGTCAGACTCGCCGTCTC+CGG - chr4_3:53151269-53151288 None:intergenic 65.0%
!! TCTAGGTTCCGGTTCGGCCC+GGG - chr4_3:53151666-53151685 None:intergenic 65.0%
!! GTCTAGGTTCCGGTTCGGCC+CGG - chr4_3:53151667-53151686 None:intergenic 65.0%
GGCCGAACCGGAACCTAGAC+CGG + chr4_3:53151667-53151686 Msa0647180:CDS 65.0%
GCCGAACCGGAACCTAGACC+GGG + chr4_3:53151668-53151687 Msa0647180:CDS 65.0%
GCCCGGTCTAGGTTCCGGTT+CGG - chr4_3:53151672-53151691 None:intergenic 65.0%
GTTGGGCCCGGTCTAGGTTC+CGG - chr4_3:53151677-53151696 None:intergenic 65.0%
!! GCATTGGTTGGGCCCGGTCT+AGG - chr4_3:53151683-53151702 None:intergenic 65.0%
AAGCCCGAAGCCCAAACGGG+TGG + chr4_3:53151818-53151837 Msa0647180:CDS 65.0%
AGCCCGAAGCCCAAACGGGT+GGG + chr4_3:53151819-53151838 Msa0647180:CDS 65.0%
AGCCCCACCCGTTTGGGCTT+CGG - chr4_3:53151825-53151844 None:intergenic 65.0%
AGCGGACCAGCTCTCCACTG+TGG - chr4_3:53151890-53151909 None:intergenic 65.0%
CAGTGGAGAGCTGGTCCGCT+TGG + chr4_3:53151890-53151909 Msa0647180:CDS 65.0%
GGAGTCAGACTCGCCGTCTC+CGG - chr4_3:53151269-53151288 None:intergenic 65.0%
!! TCTAGGTTCCGGTTCGGCCC+GGG - chr4_3:53151666-53151685 None:intergenic 65.0%
!! GTCTAGGTTCCGGTTCGGCC+CGG - chr4_3:53151667-53151686 None:intergenic 65.0%
GGCCGAACCGGAACCTAGAC+CGG + chr4_3:53151667-53151686 Msa0647180:CDS 65.0%
GCCGAACCGGAACCTAGACC+GGG + chr4_3:53151668-53151687 Msa0647180:CDS 65.0%
GCCCGGTCTAGGTTCCGGTT+CGG - chr4_3:53151672-53151691 None:intergenic 65.0%
GTTGGGCCCGGTCTAGGTTC+CGG - chr4_3:53151677-53151696 None:intergenic 65.0%
!! GCATTGGTTGGGCCCGGTCT+AGG - chr4_3:53151683-53151702 None:intergenic 65.0%
AAGCCCGAAGCCCAAACGGG+TGG + chr4_3:53151818-53151837 Msa0647180:CDS 65.0%
AGCCCGAAGCCCAAACGGGT+GGG + chr4_3:53151819-53151838 Msa0647180:CDS 65.0%
AGCCCCACCCGTTTGGGCTT+CGG - chr4_3:53151825-53151844 None:intergenic 65.0%
AGCGGACCAGCTCTCCACTG+TGG - chr4_3:53151890-53151909 None:intergenic 65.0%
CAGTGGAGAGCTGGTCCGCT+TGG + chr4_3:53151890-53151909 Msa0647180:CDS 65.0%
AGACTCGCCGTCTCCGGCAC+CGG - chr4_3:53151263-53151282 None:intergenic 70.0%
AGTTCAGGCCCGGGCCGAAC+CGG + chr4_3:53151655-53151674 Msa0647180:CDS 70.0%
GCCCGAAGCCCAAACGGGTG+GGG + chr4_3:53151820-53151839 Msa0647180:CDS 70.0%
GCCCCACCCGTTTGGGCTTC+GGG - chr4_3:53151824-53151843 None:intergenic 70.0%
AGACTCGCCGTCTCCGGCAC+CGG - chr4_3:53151263-53151282 None:intergenic 70.0%
AGTTCAGGCCCGGGCCGAAC+CGG + chr4_3:53151655-53151674 Msa0647180:CDS 70.0%
GCCCGAAGCCCAAACGGGTG+GGG + chr4_3:53151820-53151839 Msa0647180:CDS 70.0%
GCCCCACCCGTTTGGGCTTC+GGG - chr4_3:53151824-53151843 None:intergenic 70.0%
GGTTCGGCCCGGGCCTGAAC+TGG - chr4_3:53151656-53151675 None:intergenic 75.0%
GGTTCGGCCCGGGCCTGAAC+TGG - chr4_3:53151656-53151675 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 53150582 53152526 53150582 ID=Msa0647180;Name=Msa0647180
chr4_3 mRNA 53150582 53152526 53150582 ID=Msa0647180-mRNA-1;Parent=Msa0647180;Name=Msa0647180-mRNA-1;_AED=0.07;_eAED=0.07;_QI=257|1|1|1|0.5|0.33|3|415|296
chr4_3 exon 53150582 53150825 53150582 ID=Msa0647180-mRNA-1:exon:13187;Parent=Msa0647180-mRNA-1
chr4_3 exon 53150946 53151315 53150946 ID=Msa0647180-mRNA-1:exon:13188;Parent=Msa0647180-mRNA-1
chr4_3 exon 53151578 53152526 53151578 ID=Msa0647180-mRNA-1:exon:13189;Parent=Msa0647180-mRNA-1
chr4_3 five_prime_UTR 53150582 53150825 53150582 ID=Msa0647180-mRNA-1:five_prime_utr;Parent=Msa0647180-mRNA-1
chr4_3 five_prime_UTR 53150946 53150958 53150946 ID=Msa0647180-mRNA-1:five_prime_utr;Parent=Msa0647180-mRNA-1
chr4_3 CDS 53150959 53151315 53150959 ID=Msa0647180-mRNA-1:cds;Parent=Msa0647180-mRNA-1
chr4_3 CDS 53151578 53152111 53151578 ID=Msa0647180-mRNA-1:cds;Parent=Msa0647180-mRNA-1
chr4_3 three_prime_UTR 53152112 53152526 53152112 ID=Msa0647180-mRNA-1:three_prime_utr;Parent=Msa0647180-mRNA-1
Gene Sequence

>Msa0647180

ATGGAAGTTGTTGTAGCGGAAGCGTTGAAACCAAGCTTGAGGACAGAATCTATTTTCCAACAAACAATTTGTGAAGAGATTTTGTGTTTGAACGCAAACAACGTTGTTGTCGGAGAAGATTTTTCTGTCGACGACTTGCTTGATTTTTCCAACGGTGAATTTCAACATGGTTCTGTTGGAAAAGAAATTGATGTTTACCAGGAGGAGGAAGAAGAAGAAGAACATGAAAAAAACAGCACCACCTCAGGTTCTGAACATGAACGAACAGAAGATGACAACAATTCAAATTCCACAACATTTTCCGGTGCCGGAGACGGCGAGTCTGACTCCATTTTTGCCGGTGGTTTAGCAGTTCCGGCCGATGATGTTGCGGATTTGGAATGGGTGTCTCACTTTGTGGACGATTCTGTACCAGAACTCTCTCTATTGTATCCAGTTCAGGCCCGGGCCGAACCGGAACCTAGACCGGGCCCAACCAATGCTTATTCCCAGCTCTCTATAATCCGCAGAAAGCCTAGAACAACCAAGACAAGAAGGCCCAACTGTAACGTGTGGATTTTTAACCCTATACTCTTTTCAGCAAAGAAGCAGAGGAAAAAGCCCGAAGCCCAAACGGGTGGGGCTCAGTTTCAACGACGGTGCAGCCACTGCCATGTTCAGAAAACGCCACAGTGGAGAGCTGGTCCGCTTGGACCGAAAACACTATGTAACGCTTGTGGTGTTCGGTTTAAGTCCGGTCGGCTTTTCCCGGAGTATAGACCTGCATGCAGTCCGACGTTTTCCGGTGAAATTCATTCGAACAGCCACCGTAAGGTTTTGGAAATGAGGCGGAGGAAGGAGGTGGATGAACCGGTTTCCGGTCTGAACCGGATTCAAATGGTCACGAGTTGA
Protein sequence

>Msa0647180

MEVVVAEALKPSLRTESIFQQTICEEILCLNANNVVVGEDFSVDDLLDFSNGEFQHGSVGKEIDVYQEEEEEEEHEKNSTTSGSEHERTEDDNNSNSTTFSGAGDGESDSIFAGGLAVPADDVADLEWVSHFVDDSVPELSLLYPVQARAEPEPRPGPTNAYSQLSIIRRKPRTTKTRRPNCNVWIFNPILFSAKKQRKKPEAQTGGAQFQRRCSHCHVQKTPQWRAGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGEIHSNSHRKVLEMRRRKEVDEPVSGLNRIQMVTS*