Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552720 | CAA61298.1 | 91.108 | 641 | 46 | 4 | 1 | 636 | 1 | 635 | 0.0 | 745 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552720 | sp|Q7XTT4|NUCL2_ORYSJ | 56.432 | 241 | 90 | 7 | 340 | 570 | 408 | 643 | 5.08e-77 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552720 | Q40363 | 91.108 | 641 | 46 | 4 | 1 | 636 | 1 | 635 | 0.0 | 745 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0552720 | Msa0563620 | 0.848422 | 6.192547e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552720 | MtrunA17_Chr4g0038111 | 86.194 | 536 | 57 | 5 | 29 | 562 | 4 | 524 | 0.0 | 683 |
| Msa0552720 | MtrunA17_Chr1g0163591 | 43.798 | 258 | 116 | 6 | 346 | 585 | 415 | 661 | 4.04e-43 | 164 |
| Msa0552720 | MtrunA17_Chr1g0163591 | 50.000 | 144 | 67 | 4 | 353 | 492 | 269 | 411 | 1.03e-36 | 145 |
| Msa0552720 | MtrunA17_Chr1g0163591 | 35.604 | 323 | 151 | 12 | 252 | 539 | 50 | 350 | 7.58e-33 | 134 |
| Msa0552720 | MtrunA17_Chr3g0098471 | 58.120 | 117 | 41 | 2 | 323 | 431 | 67 | 183 | 2.33e-31 | 120 |
| Msa0552720 | MtrunA17_Chr3g0098471 | 71.698 | 53 | 14 | 1 | 122 | 173 | 47 | 99 | 1.02e-12 | 67.4 |
| Msa0552720 | MtrunA17_Chr3g0098471 | 47.368 | 114 | 22 | 5 | 29 | 140 | 22 | 99 | 1.53e-11 | 63.9 |
| Msa0552720 | MtrunA17_Chr3g0098471 | 59.677 | 62 | 22 | 1 | 149 | 210 | 41 | 99 | 7.34e-11 | 61.6 |
| Msa0552720 | MtrunA17_Chr8g0350331 | 88.000 | 75 | 9 | 0 | 32 | 106 | 8 | 82 | 2.05e-23 | 95.5 |
| Msa0552720 | MtrunA17_Chr1g0212611 | 26.761 | 213 | 136 | 6 | 358 | 566 | 200 | 396 | 3.28e-15 | 78.6 |
| Msa0552720 | MtrunA17_Chr1g0182761 | 39.506 | 81 | 49 | 0 | 366 | 446 | 149 | 229 | 1.27e-12 | 68.9 |
| Msa0552720 | MtrunA17_Chr8g0383661 | 29.677 | 155 | 102 | 4 | 377 | 529 | 202 | 351 | 2.82e-12 | 69.7 |
| Msa0552720 | MtrunA17_Chr4g0050311 | 31.395 | 172 | 102 | 6 | 314 | 475 | 3 | 168 | 1.31e-11 | 64.3 |
| Msa0552720 | MtrunA17_Chr1g0186001 | 38.356 | 73 | 45 | 0 | 376 | 448 | 93 | 165 | 4.94e-11 | 62.8 |
| Msa0552720 | MtrunA17_Chr3g0121631 | 41.463 | 82 | 47 | 1 | 376 | 456 | 35 | 116 | 7.99e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552720 | AT3G18610.3 | 49.342 | 304 | 126 | 11 | 343 | 636 | 320 | 605 | 6.58e-72 | 243 |
| Msa0552720 | AT3G18610.1 | 49.342 | 304 | 126 | 11 | 343 | 636 | 350 | 635 | 7.76e-72 | 244 |
| Msa0552720 | AT3G18610.2 | 49.342 | 304 | 126 | 11 | 343 | 636 | 290 | 575 | 9.11e-72 | 242 |
| Msa0552720 | AT1G45100.1 | 46.429 | 84 | 45 | 0 | 366 | 449 | 236 | 319 | 2.38e-13 | 73.2 |
| Msa0552720 | AT5G65260.1 | 39.726 | 73 | 44 | 0 | 376 | 448 | 91 | 163 | 2.59e-11 | 64.3 |
| Msa0552720 | AT5G41690.1 | 46.591 | 88 | 45 | 2 | 366 | 451 | 424 | 511 | 3.37e-11 | 66.6 |
| Msa0552720 | AT5G41690.3 | 46.591 | 88 | 45 | 2 | 366 | 451 | 424 | 511 | 3.37e-11 | 66.6 |
| Msa0552720 | AT5G41690.2 | 46.591 | 88 | 45 | 2 | 366 | 451 | 424 | 511 | 3.37e-11 | 66.6 |
| Msa0552720 | AT5G10350.2 | 38.356 | 73 | 45 | 0 | 376 | 448 | 88 | 160 | 6.19e-11 | 62.8 |
| Msa0552720 | AT5G10350.1 | 38.356 | 73 | 45 | 0 | 376 | 448 | 88 | 160 | 7.35e-11 | 62.8 |
Find 192 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAACTTATCTTCCATTT+TGG | 0.105937 | 4_1:+49386364 | Msa0552720:three_prime_UTR |
| AGGCATATTGAATGAGAAAT+TGG | 0.183956 | 4_1:-49381591 | None:intergenic |
| AAAGAAAGGGGTTAGGGTTT+TGG | 0.191255 | 4_1:-49381449 | None:intergenic |
| CCTGCGGCTGAGAGAGAATT+AGG | 0.197955 | 4_1:-49381542 | None:intergenic |
| GATGAGGATGGAAGGTTTAA+AGG | 0.217415 | 4_1:+49384970 | Msa0552720:CDS |
| TAACCAGATTCATAATCTTT+AGG | 0.228104 | 4_1:-49385602 | None:intergenic |
| AACCAGATTCATAATCTTTA+GGG | 0.230306 | 4_1:-49385601 | None:intergenic |
| GCTAAATTGATGGAGCATTT+TGG | 0.237940 | 4_1:+49385545 | Msa0552720:CDS |
| TTATTTATTTATTACTTTAC+TGG | 0.245331 | 4_1:+49386612 | Msa0552720:three_prime_UTR |
| CTGTTCTCATTTGGAGTAGC+TGG | 0.250808 | 4_1:-49384756 | None:intergenic |
| AGTAATTACCTATTATTATT+AGG | 0.251107 | 4_1:-49385229 | None:intergenic |
| GAAGTATCATCTTTCTTTGC+AGG | 0.258440 | 4_1:-49383381 | None:intergenic |
| TTCACTAACCTCTTTCTTAG+AGG | 0.273370 | 4_1:-49384158 | None:intergenic |
| CTGAGAGAGAATTAGGGTTT+TGG | 0.292852 | 4_1:-49381535 | None:intergenic |
| ATGGTTGATGCTGGCAAATC+TGG | 0.301012 | 4_1:+49384622 | Msa0552720:CDS |
| CTGGCCTCTTCCACCACTTT+GGG | 0.301540 | 4_1:-49385348 | None:intergenic |
| TTTGGAGTAGCTGGGGTATT+AGG | 0.303773 | 4_1:-49384747 | None:intergenic |
| TTTGAGCCACTGTTCTCATT+TGG | 0.312030 | 4_1:-49384765 | None:intergenic |
| GGCATATTGAATGAGAAATT+GGG | 0.316476 | 4_1:-49381590 | None:intergenic |
| GGTGGAAGAAGCGGTGGATT+TGG | 0.317426 | 4_1:+49385968 | Msa0552720:CDS |
| CAGTCTTATATGATGGATAT+TGG | 0.320068 | 4_1:+49386514 | Msa0552720:three_prime_UTR |
| CATTTACTCCTAATAATAAT+AGG | 0.329724 | 4_1:+49385221 | Msa0552720:CDS |
| CCTCTGAAGTGGTCTCTGGC+TGG | 0.335134 | 4_1:-49382872 | None:intergenic |
| TCAGATAAGAGCTAAATTGA+TGG | 0.346839 | 4_1:+49385535 | Msa0552720:intron |
| GATGGAAGGTTTAAAGGCTT+TGG | 0.349857 | 4_1:+49384976 | Msa0552720:CDS |
| GAAGTATCATCTTTCTTTGC+GGG | 0.350810 | 4_1:-49383126 | None:intergenic |
| GCATGTGAAAAGAAGGATAA+TGG | 0.351279 | 4_1:+49386676 | Msa0552720:three_prime_UTR |
| ATCCCTAAAGATTATGAATC+TGG | 0.352672 | 4_1:+49385599 | Msa0552720:CDS |
| GATGGAACAGCTTTAGTTGC+GGG | 0.356046 | 4_1:-49383087 | None:intergenic |
| CAACAACCTCTCCGCAATCT+TGG | 0.359636 | 4_1:-49384930 | None:intergenic |
| GCGGATTTCTTGCTTGATTT+AGG | 0.360381 | 4_1:-49381611 | None:intergenic |
| TATACGAAAAGAAAGGGGTT+AGG | 0.363593 | 4_1:-49381456 | None:intergenic |
| TTAGCTGGGGTCTTCTTTGA+AGG | 0.364114 | 4_1:-49382828 | None:intergenic |
| TTAGGGATTGACACCCTTGT+AGG | 0.366397 | 4_1:-49385584 | None:intergenic |
| GGAAGAGGAGGAGGTCGATT+TGG | 0.372331 | 4_1:+49386004 | Msa0552720:CDS |
| ACCTTGACTATCTCTAGGTT+TGG | 0.378375 | 4_1:-49385894 | None:intergenic |
| CTCTGAAGTGGTCTCTGGCT+GGG | 0.379329 | 4_1:-49382871 | None:intergenic |
| AGGAGTGGTGGTGGTCGATT+TGG | 0.380127 | 4_1:+49385941 | Msa0552720:CDS |
| TGTTCACAGGTTTGCATACA+TGG | 0.383254 | 4_1:+49385787 | Msa0552720:intron |
| TATCCGAACTTGCAGATGTT+TGG | 0.399450 | 4_1:+49386549 | Msa0552720:three_prime_UTR |
| ATGCTAATAGCTTACACTTT+GGG | 0.402090 | 4_1:-49385028 | None:intergenic |
| AATTGTGAGAAGAGAGAGCT+AGG | 0.403519 | 4_1:-49381484 | None:intergenic |
| ACTGGCCTCTTCCACCACTT+TGG | 0.404674 | 4_1:-49385349 | None:intergenic |
| GCTCAAAGACATTATTTGTT+GGG | 0.408855 | 4_1:+49384781 | Msa0552720:CDS |
| AGGAGTGGTGGAAGAGGAGG+AGG | 0.413886 | 4_1:+49385995 | Msa0552720:CDS |
| GATTCCTCTGAAGTGGTCTC+TGG | 0.415465 | 4_1:-49382876 | None:intergenic |
| GTTGTTTCTCCAGTGAAGTC+TGG | 0.417366 | 4_1:+49381752 | Msa0552720:CDS |
| CCTAGAGATAGTCAAGGTTC+TGG | 0.420795 | 4_1:+49385899 | Msa0552720:CDS |
| CACTTCTTCCTCATCGGAAG+AGG | 0.423274 | 4_1:-49382916 | None:intergenic |
| TAACCAAACATCTGCAAGTT+CGG | 0.423672 | 4_1:-49386552 | None:intergenic |
| GAGGAGGTCGATTTGGTGGA+AGG | 0.425269 | 4_1:+49386011 | Msa0552720:CDS |
| TAATAGGCACTTGAGTTGAA+TGG | 0.428584 | 4_1:+49385145 | Msa0552720:intron |
| AGTCTCAAACAGTATTTGTC+AGG | 0.432245 | 4_1:+49385369 | Msa0552720:CDS |
| AGTGGTGGTGGTCGATTTGG+TGG | 0.436467 | 4_1:+49385944 | Msa0552720:CDS |
| ATACGAAAAGAAAGGGGTTA+GGG | 0.440248 | 4_1:-49381455 | None:intergenic |
| AACGTTTCACGTCGAAGGAC+AGG | 0.443778 | 4_1:-49384806 | None:intergenic |
| GGTAGGAGTGGTGGAAGAGG+AGG | 0.445688 | 4_1:+49385992 | Msa0552720:CDS |
| TTCACTGGAGAAACAACAAC+TGG | 0.446672 | 4_1:-49381746 | None:intergenic |
| GGAAGGGATAGTGGCGGTAG+AGG | 0.446801 | 4_1:+49386028 | Msa0552720:CDS |
| TGTTCTCATTTGGAGTAGCT+GGG | 0.446864 | 4_1:-49384755 | None:intergenic |
| CCTTTCTTTCCAGACTTCAC+TGG | 0.449206 | 4_1:-49381761 | None:intergenic |
| GGTGGTCGATTTGGTGGAGG+TGG | 0.450277 | 4_1:+49385950 | Msa0552720:CDS |
| CGATTTGGTGGAAGGGATAG+TGG | 0.450518 | 4_1:+49386019 | Msa0552720:CDS |
| GAACTTGCAGCTTTCTTCGT+GGG | 0.451036 | 4_1:-49383836 | None:intergenic |
| AAAGCTGTTCCATCTAAGAA+TGG | 0.451944 | 4_1:+49383096 | Msa0552720:CDS |
| GGTGGTAGGAGTGGTGGAAG+AGG | 0.452249 | 4_1:+49385989 | Msa0552720:CDS |
| GGTGCACTCCCATTCTTAGA+TGG | 0.452653 | 4_1:-49383105 | None:intergenic |
| GGTTCTGGTGGTAGAGGTGG+AGG | 0.454259 | 4_1:+49385914 | Msa0552720:CDS |
| GGCTCAAAGACATTATTTGT+TGG | 0.457432 | 4_1:+49384780 | Msa0552720:CDS |
| AATAGGCACTTGAGTTGAAT+GGG | 0.459036 | 4_1:+49385146 | Msa0552720:intron |
| GGGGTCTTCTTTGAAGGAGC+AGG | 0.459580 | 4_1:-49382822 | None:intergenic |
| GACTTGATTTAGCTCGGGAG+AGG | 0.461620 | 4_1:+49385194 | Msa0552720:CDS |
| TCTGGTGGTAGAGGTGGAGG+TGG | 0.461700 | 4_1:+49385917 | Msa0552720:CDS |
| CTCTCCGACTTGATTTAGCT+CGG | 0.462101 | 4_1:+49385188 | Msa0552720:CDS |
| GTGGTAGAGGTGGAGGTGGA+AGG | 0.463792 | 4_1:+49385921 | Msa0552720:CDS |
| AGAGGAGGAGGTCGATTTGG+TGG | 0.465575 | 4_1:+49386007 | Msa0552720:CDS |
| CACTTTCACTTCTTCCTCAT+CGG | 0.467568 | 4_1:-49382922 | None:intergenic |
| CTGCGGCTGAGAGAGAATTA+GGG | 0.468196 | 4_1:-49381541 | None:intergenic |
| CTTCATGAAAGTGAACTTGA+TGG | 0.468232 | 4_1:+49385848 | Msa0552720:CDS |
| AGAGGTTGCCGCCAAGCAAA+AGG | 0.472551 | 4_1:+49382596 | Msa0552720:CDS |
| GGAGGTGGAAGGAGTGGTGG+TGG | 0.477011 | 4_1:+49385932 | Msa0552720:CDS |
| AGAGGTGGTCGAGGAGGAAG+AGG | 0.478640 | 4_1:+49386046 | Msa0552720:CDS |
| GATGGAACAGCTTTAGCGGC+AGG | 0.481143 | 4_1:-49383342 | None:intergenic |
| TAAGAAAGAGGTTAGTGAAT+CGG | 0.481358 | 4_1:+49384162 | Msa0552720:CDS |
| TTAACTCACTTCATCTTCAT+CGG | 0.486812 | 4_1:-49383885 | None:intergenic |
| ATCTTCATCGGAATCTTCAT+CGG | 0.488091 | 4_1:-49383873 | None:intergenic |
| GTACTTGTGGGGAACCTACA+AGG | 0.489480 | 4_1:+49385570 | Msa0552720:CDS |
| AGAGGTGGAGGTGGAAGGAG+TGG | 0.489917 | 4_1:+49385926 | Msa0552720:CDS |
| GAAAATTTCTTCCAAGATTG+CGG | 0.490605 | 4_1:+49384919 | Msa0552720:CDS |
| AAGCTGTTCCATCTAAGAAT+GGG | 0.493285 | 4_1:+49383097 | Msa0552720:CDS |
| ATAGTCTCAGTCTTATATGA+TGG | 0.494344 | 4_1:+49386507 | Msa0552720:three_prime_UTR |
| TGTTGATGTACGTCTTGCTT+CGG | 0.495897 | 4_1:+49384948 | Msa0552720:CDS |
| AGAACTATCATCTTTCTTTG+CGG | 0.496659 | 4_1:-49383617 | None:intergenic |
| CGCCAAGCAAAAGGCGCTGA+AGG | 0.498959 | 4_1:+49382605 | Msa0552720:CDS |
| AGTCAAGGTTCTGGTGGTAG+AGG | 0.500732 | 4_1:+49385908 | Msa0552720:CDS |
| CTGCAAGTTCGGATAGCTGC+AGG | 0.500791 | 4_1:-49386541 | None:intergenic |
| ATACCTTCAGAAGCAAAGCT+TGG | 0.501215 | 4_1:-49386091 | None:intergenic |
| AAACACTAGCCGAGAAAAGT+TGG | 0.501595 | 4_1:-49386732 | None:intergenic |
| CCTAATTCTCTCTCAGCCGC+AGG | 0.502199 | 4_1:+49381542 | Msa0552720:five_prime_UTR |
| CGAGGAGGAAGAGGTGGTCG+TGG | 0.503442 | 4_1:+49386055 | Msa0552720:CDS |
| CCAGTGAAGTCTGGAAAGAA+AGG | 0.505222 | 4_1:+49381761 | Msa0552720:CDS |
| AGAAGTATCATCTTTCTTTG+CGG | 0.506839 | 4_1:-49383127 | None:intergenic |
| ACCTCTTTCTTAGAGGCCAC+AGG | 0.507804 | 4_1:-49384151 | None:intergenic |
| CTCTGAGGAATCTGAGGATG+AGG | 0.511350 | 4_1:+49382662 | Msa0552720:CDS |
| GAAGCGGTGGATTTGGTGGT+AGG | 0.512935 | 4_1:+49385975 | Msa0552720:CDS |
| GGTGGAGGTGGAAGGAGTGG+TGG | 0.513178 | 4_1:+49385929 | Msa0552720:CDS |
| ACTTGATTTAGCTCGGGAGA+GGG | 0.513360 | 4_1:+49385195 | Msa0552720:CDS |
| GGATTTGGTGGTAGGAGTGG+TGG | 0.516006 | 4_1:+49385983 | Msa0552720:CDS |
| GGTGGTGGTCGATTTGGTGG+AGG | 0.516852 | 4_1:+49385947 | Msa0552720:CDS |
| TCAGCCCAAAGTGGTGGAAG+AGG | 0.519792 | 4_1:+49385344 | Msa0552720:CDS |
| GGAAGAAGCGGTGGATTTGG+TGG | 0.521554 | 4_1:+49385971 | Msa0552720:CDS |
| ACTTTAGGCATGTGAAAAGA+AGG | 0.522271 | 4_1:+49386669 | Msa0552720:three_prime_UTR |
| AAACCAAGCTTTGCTTCTGA+AGG | 0.523386 | 4_1:+49386088 | Msa0552720:CDS |
| GTCAGAACGTTTCACGTCGA+AGG | 0.526938 | 4_1:-49384811 | None:intergenic |
| ACAGCAGCAGGCTTAGACAC+AGG | 0.527887 | 4_1:-49384052 | None:intergenic |
| ATCAGAATCTTCTTCTTCAG+AGG | 0.530966 | 4_1:-49383418 | None:intergenic |
| AGAAGATTCTGATGAAGATG+AGG | 0.531285 | 4_1:+49383428 | Msa0552720:CDS |
| TCTCCGACTTGATTTAGCTC+GGG | 0.533160 | 4_1:+49385189 | Msa0552720:CDS |
| GGCGCTGAAGGTAGTCAAGA+AGG | 0.534542 | 4_1:+49382617 | Msa0552720:CDS |
| AGGGATAGTGGCGGTAGAGG+TGG | 0.538819 | 4_1:+49386031 | Msa0552720:CDS |
| TAAGAATCTTGGAGAGGATG+AGG | 0.539483 | 4_1:+49385400 | Msa0552720:CDS |
| GCATATTGAATGAGAAATTG+GGG | 0.539593 | 4_1:-49381589 | None:intergenic |
| GGTGGATTTGGTGGTAGGAG+TGG | 0.540537 | 4_1:+49385980 | Msa0552720:CDS |
| CCAGAACCTTGACTATCTCT+AGG | 0.540562 | 4_1:-49385899 | None:intergenic |
| AGTGGCGGTAGAGGTGGTCG+AGG | 0.540676 | 4_1:+49386037 | Msa0552720:CDS |
| CTTTGATATAGGCAAGAGGC+AGG | 0.543584 | 4_1:+49382527 | Msa0552720:intron |
| CAAGGTTCTGGTGGTAGAGG+TGG | 0.544275 | 4_1:+49385911 | Msa0552720:CDS |
| ATCTTCATCGGATTCTTCAT+CGG | 0.544637 | 4_1:-49383861 | None:intergenic |
| CGTCTTGCTTCGGATGAGGA+TGG | 0.546334 | 4_1:+49384958 | Msa0552720:CDS |
| GCAGGCTGAGGAAGAAGTCA+AGG | 0.547712 | 4_1:+49382545 | Msa0552720:CDS |
| AGAGTCAGATTCCTCTGAAG+TGG | 0.548311 | 4_1:-49382883 | None:intergenic |
| ACAGATCAAGGACGTGGAGA+TGG | 0.552435 | 4_1:+49384603 | Msa0552720:intron |
| AGAACTTGCAGCTTTCTTCG+TGG | 0.553222 | 4_1:-49383837 | None:intergenic |
| AGGAGGTCGATTTGGTGGAA+GGG | 0.553576 | 4_1:+49386012 | Msa0552720:CDS |
| ACCTGTGGCCTCTAAGAAAG+AGG | 0.554114 | 4_1:+49384150 | Msa0552720:CDS |
| TATGAATCTGGTTATTCCAA+GGG | 0.555285 | 4_1:+49385611 | Msa0552720:CDS |
| CTCCTCACTCTCGTCAGAGT+CGG | 0.559018 | 4_1:-49384444 | None:intergenic |
| TGTACGTCTTGCTTCGGATG+AGG | 0.559324 | 4_1:+49384954 | Msa0552720:CDS |
| TTATGAATCTGGTTATTCCA+AGG | 0.559573 | 4_1:+49385610 | Msa0552720:CDS |
| AGATTCCTCAGAGGATTCCT+CGG | 0.560086 | 4_1:-49382652 | None:intergenic |
| ATCTTCTGACGAAGAAGATA+AGG | 0.560224 | 4_1:+49383663 | Msa0552720:CDS |
| TTTAGATGGAACAGCTTTAG+CGG | 0.560498 | 4_1:-49383346 | None:intergenic |
| TTGCTTCGGATGAGGATGGA+AGG | 0.561733 | 4_1:+49384962 | Msa0552720:CDS |
| TTCTGTAAAATAATAAGTAA+TGG | 0.567761 | 4_1:-49386709 | None:intergenic |
| AGTGAGTGCAAAGAAGCAAA+AGG | 0.568954 | 4_1:+49382569 | Msa0552720:CDS |
| GTCTCAAACAGTATTTGTCA+GGG | 0.570865 | 4_1:+49385370 | Msa0552720:CDS |
| CGAGAGTGAGGAGGAGAGTG+AGG | 0.574779 | 4_1:+49384454 | Msa0552720:CDS |
| TGGTTGATGCTGGCAAATCT+GGG | 0.576768 | 4_1:+49384623 | Msa0552720:CDS |
| CTTGATTTAGCTCGGGAGAG+GGG | 0.578698 | 4_1:+49385196 | Msa0552720:CDS |
| GGTGGAGGTGGAAGAAGCGG+TGG | 0.580780 | 4_1:+49385962 | Msa0552720:CDS |
| GTTCTCATTTGGAGTAGCTG+GGG | 0.584519 | 4_1:-49384754 | None:intergenic |
| TATAGGCAAGAGGCAGGCTG+AGG | 0.588543 | 4_1:+49382533 | Msa0552720:intron |
| AACTACTCAGCCCAAAGTGG+TGG | 0.591190 | 4_1:+49385338 | Msa0552720:CDS |
| CTAATTCTCTCTCAGCCGCA+GGG | 0.592963 | 4_1:+49381543 | Msa0552720:five_prime_UTR |
| GGCGGTAGAGGTGGTCGAGG+AGG | 0.593185 | 4_1:+49386040 | Msa0552720:CDS |
| TGACAAATACTGTTTGAGAC+TGG | 0.594261 | 4_1:-49385367 | None:intergenic |
| GGAATCCTCTGAGGAATCTG+AGG | 0.596711 | 4_1:+49382656 | Msa0552720:CDS |
| TGTTGAGTTTGCAACTGCAG+AGG | 0.598820 | 4_1:+49385002 | Msa0552720:CDS |
| AGATGGAACAGCTTTAGTTG+CGG | 0.600270 | 4_1:-49383088 | None:intergenic |
| AAAGAAGCAAAAGGTAGAAG+AGG | 0.600905 | 4_1:+49382578 | Msa0552720:CDS |
| TTCCGACTCTGACGAGAGTG+AGG | 0.613333 | 4_1:+49384442 | Msa0552720:CDS |
| TTTGGTGGAGGTGGAAGAAG+CGG | 0.617758 | 4_1:+49385959 | Msa0552720:CDS |
| GACGTGGAGATGGTTGATGC+TGG | 0.618173 | 4_1:+49384613 | Msa0552720:CDS |
| GTTGAAACAGATCAAGGACG+TGG | 0.624210 | 4_1:+49384597 | Msa0552720:intron |
| GAAGGAGGAAAGTAGTTCCG+AGG | 0.625559 | 4_1:+49382635 | Msa0552720:CDS |
| CCAGCCAGAGACCACTTCAG+AGG | 0.625597 | 4_1:+49382872 | Msa0552720:CDS |
| AGAGATAGTCAAGGTTCTGG+TGG | 0.625604 | 4_1:+49385902 | Msa0552720:CDS |
| GGTGGTCGAGGAGGAAGAGG+TGG | 0.627115 | 4_1:+49386049 | Msa0552720:CDS |
| GAGTGATTCGTCTGATGACG+AGG | 0.627287 | 4_1:+49384186 | Msa0552720:CDS |
| TGAATCTTCTGATGAAGACA+AGG | 0.628462 | 4_1:+49383161 | Msa0552720:CDS |
| TTCACTTTGATATAGGCAAG+AGG | 0.629817 | 4_1:+49382523 | Msa0552720:intron |
| GGAGGAAGAGGTGGTCGTGG+AGG | 0.644972 | 4_1:+49386058 | Msa0552720:CDS |
| CGACTCTGACGAGAGTGAGG+AGG | 0.647070 | 4_1:+49384445 | Msa0552720:CDS |
| TCTCAAACAGTATTTGTCAG+GGG | 0.650987 | 4_1:+49385371 | Msa0552720:CDS |
| ATGAATCTGGTTATTCCAAG+GGG | 0.651208 | 4_1:+49385612 | Msa0552720:CDS |
| TGATGGTTATCAGTTGTCAG+TGG | 0.655450 | 4_1:+49385865 | Msa0552720:CDS |
| GGATAAGATGAATGTTGACA+AGG | 0.656941 | 4_1:+49384415 | Msa0552720:intron |
| TACTTGTGGGGAACCTACAA+GGG | 0.657423 | 4_1:+49385571 | Msa0552720:CDS |
| GAAACTGCCACCCTAGTCGT+CGG | 0.665969 | 4_1:-49386340 | None:intergenic |
| TGACAACTCCTCTTCCGATG+AGG | 0.666159 | 4_1:+49382908 | Msa0552720:CDS |
| GCCAAACCTAGAGATAGTCA+AGG | 0.670318 | 4_1:+49385893 | Msa0552720:CDS |
| TCTCCCGAGCTAAATCAAGT+CGG | 0.679997 | 4_1:-49385192 | None:intergenic |
| GCTGAAGGTAGTCAAGAAGG+AGG | 0.685356 | 4_1:+49382620 | Msa0552720:CDS |
| CTCATCCTCAGATTCCTCAG+AGG | 0.686828 | 4_1:-49382661 | None:intergenic |
| TGATGAAGATAAGAAACCTG+TGG | 0.691109 | 4_1:+49384135 | Msa0552720:CDS |
| TTTCTTCCAAGATTGCGGAG+AGG | 0.695206 | 4_1:+49384924 | Msa0552720:CDS |
| AGTAACTACTCAGCCCAAAG+TGG | 0.695978 | 4_1:+49385335 | Msa0552720:intron |
| CATATTGAATGAGAAATTGG+GGG | 0.702887 | 4_1:-49381588 | None:intergenic |
| TTTGGTGGAAGGGATAGTGG+CGG | 0.720960 | 4_1:+49386022 | Msa0552720:CDS |
| TAGTTCCGAGGAATCCTCTG+AGG | 0.721411 | 4_1:+49382647 | Msa0552720:CDS |
| GCTACTCCAAATGAGAACAG+TGG | 0.723162 | 4_1:+49384759 | Msa0552720:CDS |
| GGAAGCTATTCAAAACCCTG+CGG | 0.794539 | 4_1:-49381558 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATTAAATTAAAAA+AGG | - | chr4_1:49383544-49383563 | None:intergenic | 0.0% |
| !!! | ATCAATCTATTTTTAATTTA+AGG | + | chr4_1:49381654-49381673 | Msa0552720:intron | 10.0% |
| !! | ATACAATGATATAAAATTAA+GGG | - | chr4_1:49383491-49383510 | None:intergenic | 10.0% |
| !! | AATACAATGATATAAAATTA+AGG | - | chr4_1:49383492-49383511 | None:intergenic | 10.0% |
| !! | GGAAAAAATATATATTTAAT+GGG | - | chr4_1:49383771-49383790 | None:intergenic | 10.0% |
| !! | AGGAAAAAATATATATTTAA+TGG | - | chr4_1:49383772-49383791 | None:intergenic | 10.0% |
| !!! | TTAAATATATATTTTTTCCT+TGG | + | chr4_1:49383772-49383791 | Msa0552720:intron | 10.0% |
| !! | TTTATATTTCATTTCAATAT+AGG | - | chr4_1:49384290-49384309 | None:intergenic | 10.0% |
| !!! | TTTAGATTTTAATTTTAGTT+TGG | + | chr4_1:49384537-49384556 | Msa0552720:intron | 10.0% |
| !! | TTATTTATTTATTACTTTAC+TGG | + | chr4_1:49386612-49386631 | Msa0552720:three_prime_UTR | 10.0% |
| !!! | ATTTTATTTGATTTCATTCA+TGG | + | chr4_1:49381850-49381869 | Msa0552720:intron | 15.0% |
| !!! | TTTTATTTGATTTCATTCAT+GGG | + | chr4_1:49381851-49381870 | Msa0552720:intron | 15.0% |
| !!! | ATTAAAGATGATATTTTTAC+TGG | + | chr4_1:49381899-49381918 | Msa0552720:intron | 15.0% |
| !!! | TTAAAGATGATATTTTTACT+GGG | + | chr4_1:49381900-49381919 | Msa0552720:intron | 15.0% |
| !!! | ATTTTATTGTTTTTGATTCA+TGG | + | chr4_1:49381933-49381952 | Msa0552720:intron | 15.0% |
| !!! | TTTTATTGTTTTTGATTCAT+GGG | + | chr4_1:49381934-49381953 | Msa0552720:intron | 15.0% |
| !! | CAAAAATCAATTAAAAAACT+CGG | - | chr4_1:49382024-49382043 | None:intergenic | 15.0% |
| !!! | TTTAATTGATTTTTGAAACT+TGG | + | chr4_1:49382029-49382048 | Msa0552720:intron | 15.0% |
| !! | AAAAAAAAGTGAATTATAGA+GGG | - | chr4_1:49383055-49383074 | None:intergenic | 15.0% |
| !! | TAAAAAAAAGTGAATTATAG+AGG | - | chr4_1:49383056-49383075 | None:intergenic | 15.0% |
| !! | ATTGAAATGAAATATAAACA+TGG | + | chr4_1:49384292-49384311 | Msa0552720:intron | 15.0% |
| !! | AGTAATTACCTATTATTATT+AGG | - | chr4_1:49385232-49385251 | None:intergenic | 15.0% |
| !! | ATTAAAAATACAAGGAATAA+TGG | - | chr4_1:49385307-49385326 | None:intergenic | 15.0% |
| !!! | TTTTCATTAAGTATAACTTT+AGG | + | chr4_1:49386654-49386673 | Msa0552720:intron | 15.0% |
| !! | TTCTGTAAAATAATAAGTAA+TGG | - | chr4_1:49386712-49386731 | None:intergenic | 15.0% |
| !!! | TTTTATATACGAAAAGAAAG+GGG | - | chr4_1:49381464-49381483 | None:intergenic | 20.0% |
| !!! | GTTTTATATACGAAAAGAAA+GGG | - | chr4_1:49381465-49381484 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTGATTTGTTTGT+AGG | + | chr4_1:49381712-49381731 | Msa0552720:intron | 20.0% |
| !! | AAATCATATAAATGTCTCAA+TGG | - | chr4_1:49382157-49382176 | None:intergenic | 20.0% |
| !!! | TGTTTTGATGTTGATTATAT+AGG | + | chr4_1:49382319-49382338 | Msa0552720:intron | 20.0% |
| !!! | GTTTTGATGTTGATTATATA+GGG | + | chr4_1:49382320-49382339 | Msa0552720:intron | 20.0% |
| !!! | GTTTTAGTTTTTGGTAAAAT+CGG | - | chr4_1:49382351-49382370 | None:intergenic | 20.0% |
| !! | TATCAGAACATCAAATAATA+TGG | - | chr4_1:49382387-49382406 | None:intergenic | 20.0% |
| !!! | ATTTTTTTATGTTCTGATGT+CGG | + | chr4_1:49382482-49382501 | Msa0552720:intron | 20.0% |
| !!! | GTGTTTAAGATATAAATCAA+AGG | - | chr4_1:49383000-49383019 | None:intergenic | 20.0% |
| !! | ATATCATGCAATAAACTAAA+GGG | - | chr4_1:49383224-49383243 | None:intergenic | 20.0% |
| !! | TATATCATGCAATAAACTAA+AGG | - | chr4_1:49383225-49383244 | None:intergenic | 20.0% |
| !! | TAAAAAACATGAGTTATAGA+GGG | - | chr4_1:49383311-49383330 | None:intergenic | 20.0% |
| !! | ATAAAAAACATGAGTTATAG+AGG | - | chr4_1:49383312-49383331 | None:intergenic | 20.0% |
| !!! | TCTATAACTCATGTTTTTTA+TGG | + | chr4_1:49383311-49383330 | Msa0552720:intron | 20.0% |
| !!! | TGTATTTACAACTTTTTGTT+TGG | + | chr4_1:49383506-49383525 | Msa0552720:intron | 20.0% |
| !! | AGATGTGACATTTAAATATA+TGG | - | chr4_1:49383939-49383958 | None:intergenic | 20.0% |
| !! | ATGAAATATAAACATGGTAA+TGG | + | chr4_1:49384298-49384317 | Msa0552720:intron | 20.0% |
| !!! | TGTTTTGCATGTTTAATAAT+AGG | + | chr4_1:49385129-49385148 | Msa0552720:intron | 20.0% |
| !! | CATTTACTCCTAATAATAAT+AGG | + | chr4_1:49385221-49385240 | Msa0552720:CDS | 20.0% |
| !! | GCAATAGTATTAAAAATACA+AGG | - | chr4_1:49385315-49385334 | None:intergenic | 20.0% |
| !! | AAAATACATAACAGAATAAG+AGG | - | chr4_1:49385516-49385535 | None:intergenic | 20.0% |
| !!! | TGAAAATTTTACTTACTTCA+TGG | + | chr4_1:49385762-49385781 | Msa0552720:intron | 20.0% |
| !!! | ATTATTTTTTACTTCAGTTC+TGG | + | chr4_1:49386259-49386278 | Msa0552720:intron | 20.0% |
| !!! | TTGGTAATTTTAGTAAGAAT+TGG | + | chr4_1:49386450-49386469 | Msa0552720:three_prime_UTR | 20.0% |
| !!! | TTGGTAAAAATCTTTTGTAT+CGG | + | chr4_1:49386469-49386488 | Msa0552720:three_prime_UTR | 20.0% |
| !!! | GGTTTTATATACGAAAAGAA+AGG | - | chr4_1:49381466-49381485 | None:intergenic | 25.0% |
| !! | TTGATGAAAAAAGCATACTT+TGG | - | chr4_1:49381639-49381658 | None:intergenic | 25.0% |
| ! | GAGACATTTATATGATTTAC+TGG | + | chr4_1:49382159-49382178 | Msa0552720:intron | 25.0% |
| !! | GTGTTTTATGTTATGAAGTT+AGG | + | chr4_1:49382181-49382200 | Msa0552720:intron | 25.0% |
| ! | ATGTTAGTATAGATGTTGAT+TGG | + | chr4_1:49382227-49382246 | Msa0552720:intron | 25.0% |
| ! | TAATAACATCAGACCAAATT+GGG | - | chr4_1:49382291-49382310 | None:intergenic | 25.0% |
| ! | ATAATAACATCAGACCAAAT+TGG | - | chr4_1:49382292-49382311 | None:intergenic | 25.0% |
| ! | TTTACCAAAAACTAAAACCT+TGG | + | chr4_1:49382353-49382372 | Msa0552720:intron | 25.0% |
| ! | AGAACATCAAATAATATGGA+AGG | - | chr4_1:49382383-49382402 | None:intergenic | 25.0% |
| !! | TATGTCATGTTAATTTTACG+TGG | + | chr4_1:49382775-49382794 | Msa0552720:intron | 25.0% |
| ! | TTATATCTTAAACACTGTGT+TGG | + | chr4_1:49383005-49383024 | Msa0552720:intron | 25.0% |
| !!! | ACATTTTGAAGTTTATTGCA+TGG | + | chr4_1:49383190-49383209 | Msa0552720:intron | 25.0% |
| !! | TTGTTCTAGCTGTAAATTAA+AGG | - | chr4_1:49383248-49383267 | None:intergenic | 25.0% |
| ! | AACAAAACAAAACAAAACGT+TGG | - | chr4_1:49383278-49383297 | None:intergenic | 25.0% |
| ! | AGTGAGTTAAATCTTTCATA+TGG | + | chr4_1:49383898-49383917 | Msa0552720:intron | 25.0% |
| ! | TAAATATACTTGTAGTAGCA+TGG | + | chr4_1:49384328-49384347 | Msa0552720:intron | 25.0% |
| ! | ACTGAAGATAATTTAAGTCA+AGG | + | chr4_1:49384696-49384715 | Msa0552720:intron | 25.0% |
| !! | TTAGCATCTTTTCAACTTTA+TGG | + | chr4_1:49385044-49385063 | Msa0552720:intron | 25.0% |
| ! | AACCAGATTCATAATCTTTA+GGG | - | chr4_1:49385604-49385623 | None:intergenic | 25.0% |
| ! | TAACCAGATTCATAATCTTT+AGG | - | chr4_1:49385605-49385624 | None:intergenic | 25.0% |
| !!! | TAAGAAACTTTTTTGTAGTG+TGG | - | chr4_1:49386127-49386146 | None:intergenic | 25.0% |
| !! | GATACAGCTTTTCAATTAAA+AGG | + | chr4_1:49386158-49386177 | Msa0552720:intron | 25.0% |
| !! | AAACAACTTATCTTCCATTT+TGG | + | chr4_1:49386364-49386383 | Msa0552720:three_prime_UTR | 25.0% |
| !! | AACAACTTATCTTCCATTTT+GGG | + | chr4_1:49386365-49386384 | Msa0552720:three_prime_UTR | 25.0% |
| CATATTGAATGAGAAATTGG+GGG | - | chr4_1:49381591-49381610 | None:intergenic | 30.0% | |
| GCATATTGAATGAGAAATTG+GGG | - | chr4_1:49381592-49381611 | None:intergenic | 30.0% | |
| GGCATATTGAATGAGAAATT+GGG | - | chr4_1:49381593-49381612 | None:intergenic | 30.0% | |
| AGGCATATTGAATGAGAAAT+TGG | - | chr4_1:49381594-49381613 | None:intergenic | 30.0% | |
| ! | AAAAAAGCATACTTTGGTAG+CGG | - | chr4_1:49381633-49381652 | None:intergenic | 30.0% |
| AAATCGAAGCAGAAAAGTAA+AGG | - | chr4_1:49381792-49381811 | None:intergenic | 30.0% | |
| TTTCATGAAAAGATGAAGCT+TGG | + | chr4_1:49382259-49382278 | Msa0552720:intron | 30.0% | |
| AATAACATCAGACCAAATTG+GGG | - | chr4_1:49382290-49382309 | None:intergenic | 30.0% | |
| !!! | AGAACCAAGGTTTTAGTTTT+TGG | - | chr4_1:49382360-49382379 | None:intergenic | 30.0% |
| !! | GGCTATTTTCACTTTGATAT+AGG | + | chr4_1:49382516-49382535 | Msa0552720:intron | 30.0% |
| ATGCTTTAATGCATTTCGAA+TGG | + | chr4_1:49382703-49382722 | Msa0552720:intron | 30.0% | |
| !!! | GGCGTTTTAAAAAACAGAAT+AGG | - | chr4_1:49383034-49383053 | None:intergenic | 30.0% |
| !! | AGAAGTATCATCTTTCTTTG+CGG | - | chr4_1:49383130-49383149 | None:intergenic | 30.0% |
| AAAGCTGTTCCATCTAAAAA+TGG | + | chr4_1:49383351-49383370 | Msa0552720:CDS | 30.0% | |
| AAGCTGTTCCATCTAAAAAT+GGG | + | chr4_1:49383352-49383371 | Msa0552720:CDS | 30.0% | |
| !! | TTAAGGGTATTATCATCATG+CGG | - | chr4_1:49383475-49383494 | None:intergenic | 30.0% |
| AGAACTATCATCTTTCTTTG+CGG | - | chr4_1:49383620-49383639 | None:intergenic | 30.0% | |
| TTAACTCACTTCATCTTCAT+CGG | - | chr4_1:49383888-49383907 | None:intergenic | 30.0% | |
| TAAGAAAGAGGTTAGTGAAT+CGG | + | chr4_1:49384162-49384181 | Msa0552720:CDS | 30.0% | |
| !!! | ATGCTACTACATTTTTTGTG+AGG | - | chr4_1:49384264-49384283 | None:intergenic | 30.0% |
| !!! | TTTTTCTGAGGTGTTTTTGA+TGG | - | chr4_1:49384485-49384504 | None:intergenic | 30.0% |
| ATCAAAAACACCTCAGAAAA+AGG | + | chr4_1:49384484-49384503 | Msa0552720:CDS | 30.0% | |
| GATCTGTTTCAACATGAATA+TGG | - | chr4_1:49384590-49384609 | None:intergenic | 30.0% | |
| ATTCATGTTGAAACAGATCA+AGG | + | chr4_1:49384591-49384610 | Msa0552720:intron | 30.0% | |
| GCTCAAAGACATTATTTGTT+GGG | + | chr4_1:49384781-49384800 | Msa0552720:CDS | 30.0% | |
| ! | TTTCTCACTCATGTGATTTT+TGG | + | chr4_1:49384843-49384862 | Msa0552720:intron | 30.0% |
| GAAAATTTCTTCCAAGATTG+CGG | + | chr4_1:49384919-49384938 | Msa0552720:CDS | 30.0% | |
| ATGCTAATAGCTTACACTTT+GGG | - | chr4_1:49385031-49385050 | None:intergenic | 30.0% | |
| !! | ACTTCCAACTAATTTGTTTC+TGG | + | chr4_1:49385078-49385097 | Msa0552720:intron | 30.0% |
| GAATCCAGAAACAAATTAGT+TGG | - | chr4_1:49385085-49385104 | None:intergenic | 30.0% | |
| TAATGGAATCAAAACATGTG+AGG | - | chr4_1:49385290-49385309 | None:intergenic | 30.0% | |
| AGCAGAAATAATAAACACGA+GGG | - | chr4_1:49385469-49385488 | None:intergenic | 30.0% | |
| AAGCAGAAATAATAAACACG+AGG | - | chr4_1:49385470-49385489 | None:intergenic | 30.0% | |
| TCAGATAAGAGCTAAATTGA+TGG | + | chr4_1:49385535-49385554 | Msa0552720:intron | 30.0% | |
| ATCCCTAAAGATTATGAATC+TGG | + | chr4_1:49385599-49385618 | Msa0552720:CDS | 30.0% | |
| TTATGAATCTGGTTATTCCA+AGG | + | chr4_1:49385610-49385629 | Msa0552720:CDS | 30.0% | |
| TATGAATCTGGTTATTCCAA+GGG | + | chr4_1:49385611-49385630 | Msa0552720:CDS | 30.0% | |
| ! | AAAGTTTTCAATGCAGCATT+AGG | - | chr4_1:49385668-49385687 | None:intergenic | 30.0% |
| ! | AAAGTTTTCAATGCAGCATT+AGG | - | chr4_1:49385668-49385687 | None:intergenic | 30.0% |
| !!! | ACTTTTTTGTAGTGTGGAAA+AGG | - | chr4_1:49386121-49386140 | None:intergenic | 30.0% |
| GCATACATTGAATGAATACA+TGG | + | chr4_1:49386224-49386243 | Msa0552720:intron | 30.0% | |
| !!! | TTGAACTTTTTGCCATTTTC+AGG | + | chr4_1:49386300-49386319 | Msa0552720:intron | 30.0% |
| !!! | TGAACTTTTTGCCATTTTCA+GGG | + | chr4_1:49386301-49386320 | Msa0552720:intron | 30.0% |
| ! | AAGTTTTCAGTATCCCAAAA+TGG | - | chr4_1:49386381-49386400 | None:intergenic | 30.0% |
| !!! | TTAGTTTTGTTGCTCAGTTT+TGG | + | chr4_1:49386431-49386450 | Msa0552720:three_prime_UTR | 30.0% |
| ! | ATAGTCTCAGTCTTATATGA+TGG | + | chr4_1:49386507-49386526 | Msa0552720:three_prime_UTR | 30.0% |
| !! | CAGTCTTATATGATGGATAT+TGG | + | chr4_1:49386514-49386533 | Msa0552720:three_prime_UTR | 30.0% |
| ! | TTTACAGAACCAACTTTTCT+CGG | + | chr4_1:49386723-49386742 | Msa0552720:three_prime_UTR | 30.0% |
| ATACGAAAAGAAAGGGGTTA+GGG | - | chr4_1:49381458-49381477 | None:intergenic | 35.0% | |
| TATACGAAAAGAAAGGGGTT+AGG | - | chr4_1:49381459-49381478 | None:intergenic | 35.0% | |
| !!! | TGATTCATGAGTTTTGAGTG+TGG | + | chr4_1:49382117-49382136 | Msa0552720:intron | 35.0% |
| ATAACATCAGACCAAATTGG+GGG | - | chr4_1:49382289-49382308 | None:intergenic | 35.0% | |
| ATAATATGGAAGGAGAACCA+AGG | - | chr4_1:49382373-49382392 | None:intergenic | 35.0% | |
| !!! | TCTGATGTCGGTTTTCATAT+TGG | + | chr4_1:49382494-49382513 | Msa0552720:intron | 35.0% |
| !!! | CTGATGTCGGTTTTCATATT+GGG | + | chr4_1:49382495-49382514 | Msa0552720:intron | 35.0% |
| TTCACTTTGATATAGGCAAG+AGG | + | chr4_1:49382523-49382542 | Msa0552720:intron | 35.0% | |
| AAAGAAGCAAAAGGTAGAAG+AGG | + | chr4_1:49382578-49382597 | Msa0552720:CDS | 35.0% | |
| !!! | TCACATTCCCATTTTTAGCT+GGG | - | chr4_1:49382845-49382864 | None:intergenic | 35.0% |
| !!! | TTCACATTCCCATTTTTAGC+TGG | - | chr4_1:49382846-49382865 | None:intergenic | 35.0% |
| AAAGCTGTTCCATCTAAGAA+TGG | + | chr4_1:49383096-49383115 | Msa0552720:CDS | 35.0% | |
| AAGCTGTTCCATCTAAGAAT+GGG | + | chr4_1:49383097-49383116 | Msa0552720:CDS | 35.0% | |
| ! | GAAGTATCATCTTTCTTTGC+GGG | - | chr4_1:49383129-49383148 | None:intergenic | 35.0% |
| TGAATCTTCTGATGAAGACA+AGG | + | chr4_1:49383161-49383180 | Msa0552720:CDS | 35.0% | |
| ! | TTTAGATGGAACAGCTTTAG+CGG | - | chr4_1:49383349-49383368 | None:intergenic | 35.0% |
| ! | GAAGTATCATCTTTCTTTGC+AGG | - | chr4_1:49383129-49383148 | None:intergenic | 35.0% |
| ATCAGAATCTTCTTCTTCAG+AGG | - | chr4_1:49383421-49383440 | None:intergenic | 35.0% | |
| AGAAGATTCTGATGAAGATG+AGG | + | chr4_1:49383428-49383447 | Msa0552720:CDS | 35.0% | |
| AAAGCTGTTCCTTCCAAAAA+TGG | + | chr4_1:49383586-49383605 | Msa0552720:CDS | 35.0% | |
| AAGCTGTTCCTTCCAAAAAT+GGG | + | chr4_1:49383587-49383606 | Msa0552720:CDS | 35.0% | |
| ATCTTCTGACGAAGAAGATA+AGG | + | chr4_1:49383663-49383682 | Msa0552720:CDS | 35.0% | |
| !! | ACTCACATTTTTAGAGGCTT+TGG | - | chr4_1:49383813-49383832 | None:intergenic | 35.0% |
| ATCTTCATCGGATTCTTCAT+CGG | - | chr4_1:49383864-49383883 | None:intergenic | 35.0% | |
| ATCTTCATCGGAATCTTCAT+CGG | - | chr4_1:49383876-49383895 | None:intergenic | 35.0% | |
| TATGCTACCTTTCTACTAGA+GGG | + | chr4_1:49383958-49383977 | Msa0552720:intron | 35.0% | |
| TGATGAAGATAAGAAACCTG+TGG | + | chr4_1:49384135-49384154 | Msa0552720:CDS | 35.0% | |
| TTCACTAACCTCTTTCTTAG+AGG | - | chr4_1:49384161-49384180 | None:intergenic | 35.0% | |
| CTACTAATGTAGTAGCATGT+AGG | + | chr4_1:49384237-49384256 | Msa0552720:intron | 35.0% | |
| ATACAATATGCGTCAATGAC+AGG | + | chr4_1:49384394-49384413 | Msa0552720:intron | 35.0% | |
| GGATAAGATGAATGTTGACA+AGG | + | chr4_1:49384415-49384434 | Msa0552720:intron | 35.0% | |
| ! | TATATGCTGACCTTTTTCTG+AGG | - | chr4_1:49384497-49384516 | None:intergenic | 35.0% |
| GGCTCAAAGACATTATTTGT+TGG | + | chr4_1:49384780-49384799 | Msa0552720:CDS | 35.0% | |
| GATGCTAATAGCTTACACTT+TGG | - | chr4_1:49385032-49385051 | None:intergenic | 35.0% | |
| !! | TAATAGGCACTTGAGTTGAA+TGG | + | chr4_1:49385145-49385164 | Msa0552720:intron | 35.0% |
| !! | AATAGGCACTTGAGTTGAAT+GGG | + | chr4_1:49385146-49385165 | Msa0552720:intron | 35.0% |
| ! | TGACAAATACTGTTTGAGAC+TGG | - | chr4_1:49385370-49385389 | None:intergenic | 35.0% |
| AGTCTCAAACAGTATTTGTC+AGG | + | chr4_1:49385369-49385388 | Msa0552720:CDS | 35.0% | |
| GTCTCAAACAGTATTTGTCA+GGG | + | chr4_1:49385370-49385389 | Msa0552720:CDS | 35.0% | |
| TCTCAAACAGTATTTGTCAG+GGG | + | chr4_1:49385371-49385390 | Msa0552720:CDS | 35.0% | |
| ! | CATAACAGAATAAGAGGTGT+TGG | - | chr4_1:49385510-49385529 | None:intergenic | 35.0% |
| !! | GCTAAATTGATGGAGCATTT+TGG | + | chr4_1:49385545-49385564 | Msa0552720:CDS | 35.0% |
| !! | AAATTGATGGAGCATTTTGG+TGG | + | chr4_1:49385548-49385567 | Msa0552720:CDS | 35.0% |
| ATGAATCTGGTTATTCCAAG+GGG | + | chr4_1:49385612-49385631 | Msa0552720:CDS | 35.0% | |
| ! | TTACTTCATGGATTGTTCAC+AGG | + | chr4_1:49385774-49385793 | Msa0552720:intron | 35.0% |
| CTTCATGAAAGTGAACTTGA+TGG | + | chr4_1:49385848-49385867 | Msa0552720:CDS | 35.0% | |
| ! | GTAGTCTTTTTCCCTGAAAA+TGG | - | chr4_1:49386315-49386334 | None:intergenic | 35.0% |
| TAACCAAACATCTGCAAGTT+CGG | - | chr4_1:49386555-49386574 | None:intergenic | 35.0% | |
| ACTTTAGGCATGTGAAAAGA+AGG | + | chr4_1:49386669-49386688 | Msa0552720:three_prime_UTR | 35.0% | |
| GCATGTGAAAAGAAGGATAA+TGG | + | chr4_1:49386676-49386695 | Msa0552720:three_prime_UTR | 35.0% | |
| ! | AAGAAAGGGGTTAGGGTTTT+GGG | - | chr4_1:49381451-49381470 | None:intergenic | 40.0% |
| ! | AAAGAAAGGGGTTAGGGTTT+TGG | - | chr4_1:49381452-49381471 | None:intergenic | 40.0% |
| AATTGTGAGAAGAGAGAGCT+AGG | - | chr4_1:49381487-49381506 | None:intergenic | 40.0% | |
| ! | CTGAGAGAGAATTAGGGTTT+TGG | - | chr4_1:49381538-49381557 | None:intergenic | 40.0% |
| GCGGATTTCTTGCTTGATTT+AGG | - | chr4_1:49381614-49381633 | None:intergenic | 40.0% | |
| TTCACTGGAGAAACAACAAC+TGG | - | chr4_1:49381749-49381768 | None:intergenic | 40.0% | |
| TCGAAGCAGAAAAGTAAAGG+TGG | - | chr4_1:49381789-49381808 | None:intergenic | 40.0% | |
| !!! | GGGTTTTAGCTTTGAAGTGT+TGG | + | chr4_1:49381871-49381890 | Msa0552720:intron | 40.0% |
| AGTGAGTGCAAAGAAGCAAA+AGG | + | chr4_1:49382569-49382588 | Msa0552720:CDS | 40.0% | |
| AAGAAGACCCCAGCTAAAAA+TGG | + | chr4_1:49382834-49382853 | Msa0552720:CDS | 40.0% | |
| AGAAGACCCCAGCTAAAAAT+GGG | + | chr4_1:49382835-49382854 | Msa0552720:CDS | 40.0% | |
| !!! | CACATTCCCATTTTTAGCTG+GGG | - | chr4_1:49382844-49382863 | None:intergenic | 40.0% |
| CACTTTCACTTCTTCCTCAT+CGG | - | chr4_1:49382925-49382944 | None:intergenic | 40.0% | |
| ! | AGATGGAACAGCTTTAGTTG+CGG | - | chr4_1:49383091-49383110 | None:intergenic | 40.0% |
| !! | GATACACTCCCATTTTTGGA+AGG | - | chr4_1:49383598-49383617 | None:intergenic | 40.0% |
| TGACGAAGAAGATAAGGTAG+TGG | + | chr4_1:49383669-49383688 | Msa0552720:intron | 40.0% | |
| CTATGCTACCTTTCTACTAG+AGG | + | chr4_1:49383957-49383976 | Msa0552720:intron | 40.0% | |
| CTTCTAACCCTCTAGTAGAA+AGG | - | chr4_1:49383968-49383987 | None:intergenic | 40.0% | |
| TAACTTATGCCCCACTGTAT+AGG | + | chr4_1:49384021-49384040 | Msa0552720:intron | 40.0% | |
| ! | TGTTCTCATTTGGAGTAGCT+GGG | - | chr4_1:49384758-49384777 | None:intergenic | 40.0% |
| TTTGAGCCACTGTTCTCATT+TGG | - | chr4_1:49384768-49384787 | None:intergenic | 40.0% | |
| TGTTGATGTACGTCTTGCTT+CGG | + | chr4_1:49384948-49384967 | Msa0552720:CDS | 40.0% | |
| GATGAGGATGGAAGGTTTAA+AGG | + | chr4_1:49384970-49384989 | Msa0552720:CDS | 40.0% | |
| GATGGAAGGTTTAAAGGCTT+TGG | + | chr4_1:49384976-49384995 | Msa0552720:CDS | 40.0% | |
| TAAGAATCTTGGAGAGGATG+AGG | + | chr4_1:49385400-49385419 | Msa0552720:CDS | 40.0% | |
| !! | GTGATTTTATTTCCCCCCTT+CGG | + | chr4_1:49385422-49385441 | Msa0552720:intron | 40.0% |
| !! | AGCATTTTGGTGGTACTTGT+GGG | + | chr4_1:49385558-49385577 | Msa0552720:CDS | 40.0% |
| TTGCAAAGAAACATACCCCT+TGG | - | chr4_1:49385630-49385649 | None:intergenic | 40.0% | |
| TGTTCACAGGTTTGCATACA+TGG | + | chr4_1:49385787-49385806 | Msa0552720:intron | 40.0% | |
| TGATGGTTATCAGTTGTCAG+TGG | + | chr4_1:49385865-49385884 | Msa0552720:CDS | 40.0% | |
| ACCTTGACTATCTCTAGGTT+TGG | - | chr4_1:49385897-49385916 | None:intergenic | 40.0% | |
| AAACCAAGCTTTGCTTCTGA+AGG | + | chr4_1:49386088-49386107 | Msa0552720:CDS | 40.0% | |
| ATACCTTCAGAAGCAAAGCT+TGG | - | chr4_1:49386094-49386113 | None:intergenic | 40.0% | |
| TATCCGAACTTGCAGATGTT+TGG | + | chr4_1:49386549-49386568 | Msa0552720:three_prime_UTR | 40.0% | |
| AAACACTAGCCGAGAAAAGT+TGG | - | chr4_1:49386735-49386754 | None:intergenic | 40.0% | |
| ! | GGCTAGTGTTTTCTGATCAA+AGG | + | chr4_1:49386744-49386763 | Msa0552720:three_prime_UTR | 40.0% |
| GGAAGCTATTCAAAACCCTG+CGG | - | chr4_1:49381561-49381580 | None:intergenic | 45.0% | |
| GAATGAGAAATTGGGGGATG+CGG | - | chr4_1:49381585-49381604 | None:intergenic | 45.0% | |
| !! | GTTGTTTCTCCAGTGAAGTC+TGG | + | chr4_1:49381752-49381771 | Msa0552720:CDS | 45.0% |
| CCTTTCTTTCCAGACTTCAC+TGG | - | chr4_1:49381764-49381783 | None:intergenic | 45.0% | |
| CCAGTGAAGTCTGGAAAGAA+AGG | + | chr4_1:49381761-49381780 | Msa0552720:CDS | 45.0% | |
| !! | AGCTTGGTTTTCCCCCAATT+TGG | + | chr4_1:49382275-49382294 | Msa0552720:intron | 45.0% |
| CTTTGATATAGGCAAGAGGC+AGG | + | chr4_1:49382527-49382546 | Msa0552720:intron | 45.0% | |
| AGATTCCTCAGAGGATTCCT+CGG | - | chr4_1:49382655-49382674 | None:intergenic | 45.0% | |
| TTAGCTGGGGTCTTCTTTGA+AGG | - | chr4_1:49382831-49382850 | None:intergenic | 45.0% | |
| ! | AGAGTCAGATTCCTCTGAAG+TGG | - | chr4_1:49382886-49382905 | None:intergenic | 45.0% |
| ! | GATGGAACAGCTTTAGTTGC+GGG | - | chr4_1:49383090-49383109 | None:intergenic | 45.0% |
| !! | GGTGCACTCCCATTTTTAGA+TGG | - | chr4_1:49383363-49383382 | None:intergenic | 45.0% |
| ! | TGCGGATACACTCCCATTTT+TGG | - | chr4_1:49383602-49383621 | None:intergenic | 45.0% |
| !! | TTTTTAGAGGCTTTGGCAGC+AGG | - | chr4_1:49383806-49383825 | None:intergenic | 45.0% |
| !! | GGGTGCACTCACATTTTTAG+AGG | - | chr4_1:49383819-49383838 | None:intergenic | 45.0% |
| GAACTTGCAGCTTTCTTCGT+GGG | - | chr4_1:49383839-49383858 | None:intergenic | 45.0% | |
| AGAACTTGCAGCTTTCTTCG+TGG | - | chr4_1:49383840-49383859 | None:intergenic | 45.0% | |
| GCTTTGCATCCTATACAGTG+GGG | - | chr4_1:49384033-49384052 | None:intergenic | 45.0% | |
| GGCTTTGCATCCTATACAGT+GGG | - | chr4_1:49384034-49384053 | None:intergenic | 45.0% | |
| AGGCTTTGCATCCTATACAG+TGG | - | chr4_1:49384035-49384054 | None:intergenic | 45.0% | |
| !!! | CTCTTTTTTGCAACAGCAGC+AGG | - | chr4_1:49384067-49384086 | None:intergenic | 45.0% |
| GTTGAAACAGATCAAGGACG+TGG | + | chr4_1:49384597-49384616 | Msa0552720:intron | 45.0% | |
| ! | ATGGTTGATGCTGGCAAATC+TGG | + | chr4_1:49384622-49384641 | Msa0552720:CDS | 45.0% |
| ! | TGGTTGATGCTGGCAAATCT+GGG | + | chr4_1:49384623-49384642 | Msa0552720:CDS | 45.0% |
| ! | TTTGGAGTAGCTGGGGTATT+AGG | - | chr4_1:49384750-49384769 | None:intergenic | 45.0% |
| ! | GTTCTCATTTGGAGTAGCTG+GGG | - | chr4_1:49384757-49384776 | None:intergenic | 45.0% |
| ! | CTGTTCTCATTTGGAGTAGC+TGG | - | chr4_1:49384759-49384778 | None:intergenic | 45.0% |
| GCTACTCCAAATGAGAACAG+TGG | + | chr4_1:49384759-49384778 | Msa0552720:CDS | 45.0% | |
| TTTCTTCCAAGATTGCGGAG+AGG | + | chr4_1:49384924-49384943 | Msa0552720:CDS | 45.0% | |
| TGTTGAGTTTGCAACTGCAG+AGG | + | chr4_1:49385002-49385021 | Msa0552720:CDS | 45.0% | |
| ! | CTCTCCGACTTGATTTAGCT+CGG | + | chr4_1:49385188-49385207 | Msa0552720:CDS | 45.0% |
| ! | TCTCCGACTTGATTTAGCTC+GGG | + | chr4_1:49385189-49385208 | Msa0552720:CDS | 45.0% |
| TCTCCCGAGCTAAATCAAGT+CGG | - | chr4_1:49385195-49385214 | None:intergenic | 45.0% | |
| ! | ACTTGATTTAGCTCGGGAGA+GGG | + | chr4_1:49385195-49385214 | Msa0552720:CDS | 45.0% |
| AGTAACTACTCAGCCCAAAG+TGG | + | chr4_1:49385335-49385354 | Msa0552720:intron | 45.0% | |
| ATCATTGTGCATGAGCCGAA+GGG | - | chr4_1:49385440-49385459 | None:intergenic | 45.0% | |
| AATCATTGTGCATGAGCCGA+AGG | - | chr4_1:49385441-49385460 | None:intergenic | 45.0% | |
| !! | GAGCATTTTGGTGGTACTTG+TGG | + | chr4_1:49385557-49385576 | Msa0552720:CDS | 45.0% |
| !! | GCATTTTGGTGGTACTTGTG+GGG | + | chr4_1:49385559-49385578 | Msa0552720:CDS | 45.0% |
| TACTTGTGGGGAACCTACAA+GGG | + | chr4_1:49385571-49385590 | Msa0552720:CDS | 45.0% | |
| TTAGGGATTGACACCCTTGT+AGG | - | chr4_1:49385587-49385606 | None:intergenic | 45.0% | |
| TGCAGCATTAGGAGAAGCAA+TGG | - | chr4_1:49385657-49385676 | None:intergenic | 45.0% | |
| GCCAAACCTAGAGATAGTCA+AGG | + | chr4_1:49385893-49385912 | Msa0552720:CDS | 45.0% | |
| CCAGAACCTTGACTATCTCT+AGG | - | chr4_1:49385902-49385921 | None:intergenic | 45.0% | |
| CCTAGAGATAGTCAAGGTTC+TGG | + | chr4_1:49385899-49385918 | Msa0552720:CDS | 45.0% | |
| ! | AGAGATAGTCAAGGTTCTGG+TGG | + | chr4_1:49385902-49385921 | Msa0552720:CDS | 45.0% |
| !! | ACTACTTTTGCCGACGACTA+GGG | + | chr4_1:49386330-49386349 | Msa0552720:CDS | 45.0% |
| !!! | TTTAATTTAATTTTTTTTCA+TGG | + | chr4_1:49383546-49383565 | Msa0552720:intron | 5.0% |
| !!! | GGGTTTTGGGCTTGAGGTTT+CGG | - | chr4_1:49381438-49381457 | None:intergenic | 50.0% |
| CTGCGGCTGAGAGAGAATTA+GGG | - | chr4_1:49381544-49381563 | None:intergenic | 50.0% | |
| CTAATTCTCTCTCAGCCGCA+GGG | + | chr4_1:49381543-49381562 | Msa0552720:five_prime_UTR | 50.0% | |
| ! | TACCTTCAGCGCCTTTTGCT+TGG | - | chr4_1:49382610-49382629 | None:intergenic | 50.0% |
| GCTGAAGGTAGTCAAGAAGG+AGG | + | chr4_1:49382620-49382639 | Msa0552720:CDS | 50.0% | |
| GAAGGAGGAAAGTAGTTCCG+AGG | + | chr4_1:49382635-49382654 | Msa0552720:CDS | 50.0% | |
| TAGTTCCGAGGAATCCTCTG+AGG | + | chr4_1:49382647-49382666 | Msa0552720:CDS | 50.0% | |
| ! | GGAATCCTCTGAGGAATCTG+AGG | + | chr4_1:49382656-49382675 | Msa0552720:CDS | 50.0% |
| CTCATCCTCAGATTCCTCAG+AGG | - | chr4_1:49382664-49382683 | None:intergenic | 50.0% | |
| ! | CTCTGAGGAATCTGAGGATG+AGG | + | chr4_1:49382662-49382681 | Msa0552720:CDS | 50.0% |
| !! | GATTCCTCTGAAGTGGTCTC+TGG | - | chr4_1:49382879-49382898 | None:intergenic | 50.0% |
| TGACAACTCCTCTTCCGATG+AGG | + | chr4_1:49382908-49382927 | Msa0552720:CDS | 50.0% | |
| CACTTCTTCCTCATCGGAAG+AGG | - | chr4_1:49382919-49382938 | None:intergenic | 50.0% | |
| GGTGCACTCCCATTCTTAGA+TGG | - | chr4_1:49383108-49383127 | None:intergenic | 50.0% | |
| ! | GAAGGAACAGCTTTTGCTGC+AGG | - | chr4_1:49383580-49383599 | None:intergenic | 50.0% |
| ! | ACCTGTGGCCTCTAAGAAAG+AGG | + | chr4_1:49384150-49384169 | Msa0552720:CDS | 50.0% |
| ACCTCTTTCTTAGAGGCCAC+AGG | - | chr4_1:49384154-49384173 | None:intergenic | 50.0% | |
| ! | GAGTGATTCGTCTGATGACG+AGG | + | chr4_1:49384186-49384205 | Msa0552720:CDS | 50.0% |
| ACAGATCAAGGACGTGGAGA+TGG | + | chr4_1:49384603-49384622 | Msa0552720:intron | 50.0% | |
| AACGTTTCACGTCGAAGGAC+AGG | - | chr4_1:49384809-49384828 | None:intergenic | 50.0% | |
| GTCAGAACGTTTCACGTCGA+AGG | - | chr4_1:49384814-49384833 | None:intergenic | 50.0% | |
| CAACAACCTCTCCGCAATCT+TGG | - | chr4_1:49384933-49384952 | None:intergenic | 50.0% | |
| TGTACGTCTTGCTTCGGATG+AGG | + | chr4_1:49384954-49384973 | Msa0552720:CDS | 50.0% | |
| TTGCTTCGGATGAGGATGGA+AGG | + | chr4_1:49384962-49384981 | Msa0552720:CDS | 50.0% | |
| ! | GACTTGATTTAGCTCGGGAG+AGG | + | chr4_1:49385194-49385213 | Msa0552720:CDS | 50.0% |
| ! | CTTGATTTAGCTCGGGAGAG+GGG | + | chr4_1:49385196-49385215 | Msa0552720:CDS | 50.0% |
| AACTACTCAGCCCAAAGTGG+TGG | + | chr4_1:49385338-49385357 | Msa0552720:CDS | 50.0% | |
| TCATTGTGCATGAGCCGAAG+GGG | - | chr4_1:49385439-49385458 | None:intergenic | 50.0% | |
| GTACTTGTGGGGAACCTACA+AGG | + | chr4_1:49385570-49385589 | Msa0552720:CDS | 50.0% | |
| TGCAGCATTAGGAGAAGCAG+TGG | - | chr4_1:49385706-49385725 | None:intergenic | 50.0% | |
| ! | AGTCAAGGTTCTGGTGGTAG+AGG | + | chr4_1:49385908-49385927 | Msa0552720:CDS | 50.0% |
| TTTGGTGGAGGTGGAAGAAG+CGG | + | chr4_1:49385959-49385978 | Msa0552720:CDS | 50.0% | |
| !! | AGGAGGTCGATTTGGTGGAA+GGG | + | chr4_1:49386012-49386031 | Msa0552720:CDS | 50.0% |
| !! | CGATTTGGTGGAAGGGATAG+TGG | + | chr4_1:49386019-49386038 | Msa0552720:CDS | 50.0% |
| ! | TTTGGTGGAAGGGATAGTGG+CGG | + | chr4_1:49386022-49386041 | Msa0552720:CDS | 50.0% |
| !! | GACTACTTTTGCCGACGACT+AGG | + | chr4_1:49386329-49386348 | Msa0552720:CDS | 50.0% |
| !!! | GGGTTAGGGTTTTGGGCTTG+AGG | - | chr4_1:49381444-49381463 | None:intergenic | 55.0% |
| GCAGAGAGAGAGAGAGAGTG+AGG | - | chr4_1:49381510-49381529 | None:intergenic | 55.0% | |
| CCTGCGGCTGAGAGAGAATT+AGG | - | chr4_1:49381545-49381564 | None:intergenic | 55.0% | |
| CCTAATTCTCTCTCAGCCGC+AGG | + | chr4_1:49381542-49381561 | Msa0552720:five_prime_UTR | 55.0% | |
| TGAGAAATTGGGGGATGCGG+CGG | - | chr4_1:49381582-49381601 | None:intergenic | 55.0% | |
| TATAGGCAAGAGGCAGGCTG+AGG | + | chr4_1:49382533-49382552 | Msa0552720:intron | 55.0% | |
| GCAGGCTGAGGAAGAAGTCA+AGG | + | chr4_1:49382545-49382564 | Msa0552720:CDS | 55.0% | |
| AGAGGTTGCCGCCAAGCAAA+AGG | + | chr4_1:49382596-49382615 | Msa0552720:CDS | 55.0% | |
| ! | CTTCAGCGCCTTTTGCTTGG+CGG | - | chr4_1:49382607-49382626 | None:intergenic | 55.0% |
| ! | GGCGCTGAAGGTAGTCAAGA+AGG | + | chr4_1:49382617-49382636 | Msa0552720:CDS | 55.0% |
| ! | GGAGCAGGAGCTTTTGCAAC+AGG | - | chr4_1:49382810-49382829 | None:intergenic | 55.0% |
| ! | GGGGTCTTCTTTGAAGGAGC+AGG | - | chr4_1:49382825-49382844 | None:intergenic | 55.0% |
| !! | CTCTGAAGTGGTCTCTGGCT+GGG | - | chr4_1:49382874-49382893 | None:intergenic | 55.0% |
| ! | GATGGAACAGCTTTAGCGGC+AGG | - | chr4_1:49383345-49383364 | None:intergenic | 55.0% |
| ! | GGCTTTGGCAGCAGGTTTCT+GGG | - | chr4_1:49383798-49383817 | None:intergenic | 55.0% |
| ! | AGGCTTTGGCAGCAGGTTTC+TGG | - | chr4_1:49383799-49383818 | None:intergenic | 55.0% |
| ACAGCAGCAGGCTTAGACAC+AGG | - | chr4_1:49384055-49384074 | None:intergenic | 55.0% | |
| TTCCGACTCTGACGAGAGTG+AGG | + | chr4_1:49384442-49384461 | Msa0552720:CDS | 55.0% | |
| CTCCTCACTCTCGTCAGAGT+CGG | - | chr4_1:49384447-49384466 | None:intergenic | 55.0% | |
| ! | GACGTGGAGATGGTTGATGC+TGG | + | chr4_1:49384613-49384632 | Msa0552720:CDS | 55.0% |
| CGTCTTGCTTCGGATGAGGA+TGG | + | chr4_1:49384958-49384977 | Msa0552720:CDS | 55.0% | |
| ! | TCAGCCCAAAGTGGTGGAAG+AGG | + | chr4_1:49385344-49385363 | Msa0552720:CDS | 55.0% |
| CTGGCCTCTTCCACCACTTT+GGG | - | chr4_1:49385351-49385370 | None:intergenic | 55.0% | |
| ! | ACTGGCCTCTTCCACCACTT+TGG | - | chr4_1:49385352-49385371 | None:intergenic | 55.0% |
| ATTGTGCATGAGCCGAAGGG+GGG | - | chr4_1:49385437-49385456 | None:intergenic | 55.0% | |
| CATTGTGCATGAGCCGAAGG+GGG | - | chr4_1:49385438-49385457 | None:intergenic | 55.0% | |
| ! | CAAGGTTCTGGTGGTAGAGG+TGG | + | chr4_1:49385911-49385930 | Msa0552720:CDS | 55.0% |
| !! | AGGAGTGGTGGTGGTCGATT+TGG | + | chr4_1:49385941-49385960 | Msa0552720:CDS | 55.0% |
| !! | AGTGGTGGTGGTCGATTTGG+TGG | + | chr4_1:49385944-49385963 | Msa0552720:CDS | 55.0% |
| ! | GGTGGAAGAAGCGGTGGATT+TGG | + | chr4_1:49385968-49385987 | Msa0552720:CDS | 55.0% |
| ! | GGAAGAAGCGGTGGATTTGG+TGG | + | chr4_1:49385971-49385990 | Msa0552720:CDS | 55.0% |
| !! | GAAGCGGTGGATTTGGTGGT+AGG | + | chr4_1:49385975-49385994 | Msa0552720:CDS | 55.0% |
| !! | GGTGGATTTGGTGGTAGGAG+TGG | + | chr4_1:49385980-49385999 | Msa0552720:CDS | 55.0% |
| !! | GGATTTGGTGGTAGGAGTGG+TGG | + | chr4_1:49385983-49386002 | Msa0552720:CDS | 55.0% |
| GGAAGAGGAGGAGGTCGATT+TGG | + | chr4_1:49386004-49386023 | Msa0552720:CDS | 55.0% | |
| !! | AGAGGAGGAGGTCGATTTGG+TGG | + | chr4_1:49386007-49386026 | Msa0552720:CDS | 55.0% |
| !! | GAGGAGGTCGATTTGGTGGA+AGG | + | chr4_1:49386011-49386030 | Msa0552720:CDS | 55.0% |
| ! | ACTTTTGCCGACGACTAGGG+TGG | + | chr4_1:49386333-49386352 | Msa0552720:exon | 55.0% |
| GAAACTGCCACCCTAGTCGT+CGG | - | chr4_1:49386343-49386362 | None:intergenic | 55.0% | |
| CTGCAAGTTCGGATAGCTGC+AGG | - | chr4_1:49386544-49386563 | None:intergenic | 55.0% | |
| !! | CGCCAAGCAAAAGGCGCTGA+AGG | + | chr4_1:49382605-49382624 | Msa0552720:CDS | 60.0% |
| !! | CCTCTGAAGTGGTCTCTGGC+TGG | - | chr4_1:49382875-49382894 | None:intergenic | 60.0% |
| CCAGCCAGAGACCACTTCAG+AGG | + | chr4_1:49382872-49382891 | Msa0552720:CDS | 60.0% | |
| CGACTCTGACGAGAGTGAGG+AGG | + | chr4_1:49384445-49384464 | Msa0552720:CDS | 60.0% | |
| CGAGAGTGAGGAGGAGAGTG+AGG | + | chr4_1:49384454-49384473 | Msa0552720:CDS | 60.0% | |
| ! | GGTTCTGGTGGTAGAGGTGG+AGG | + | chr4_1:49385914-49385933 | Msa0552720:CDS | 60.0% |
| TCTGGTGGTAGAGGTGGAGG+TGG | + | chr4_1:49385917-49385936 | Msa0552720:CDS | 60.0% | |
| GTGGTAGAGGTGGAGGTGGA+AGG | + | chr4_1:49385921-49385940 | Msa0552720:CDS | 60.0% | |
| AGAGGTGGAGGTGGAAGGAG+TGG | + | chr4_1:49385926-49385945 | Msa0552720:CDS | 60.0% | |
| !! | GGTGGTGGTCGATTTGGTGG+AGG | + | chr4_1:49385947-49385966 | Msa0552720:CDS | 60.0% |
| !! | GGTGGTCGATTTGGTGGAGG+TGG | + | chr4_1:49385950-49385969 | Msa0552720:CDS | 60.0% |
| ! | GGTGGTAGGAGTGGTGGAAG+AGG | + | chr4_1:49385989-49386008 | Msa0552720:CDS | 60.0% |
| ! | GGTAGGAGTGGTGGAAGAGG+AGG | + | chr4_1:49385992-49386011 | Msa0552720:CDS | 60.0% |
| ! | AGGAGTGGTGGAAGAGGAGG+AGG | + | chr4_1:49385995-49386014 | Msa0552720:CDS | 60.0% |
| ! | GGAAGGGATAGTGGCGGTAG+AGG | + | chr4_1:49386028-49386047 | Msa0552720:CDS | 60.0% |
| ! | AGGGATAGTGGCGGTAGAGG+TGG | + | chr4_1:49386031-49386050 | Msa0552720:CDS | 60.0% |
| AGAGGTGGTCGAGGAGGAAG+AGG | + | chr4_1:49386046-49386065 | Msa0552720:CDS | 60.0% | |
| ! | GGCAGCAGGTTTCTGGGCCA+AGG | - | chr4_1:49383792-49383811 | None:intergenic | 65.0% |
| GGTGGAGGTGGAAGGAGTGG+TGG | + | chr4_1:49385929-49385948 | Msa0552720:CDS | 65.0% | |
| GGAGGTGGAAGGAGTGGTGG+TGG | + | chr4_1:49385932-49385951 | Msa0552720:CDS | 65.0% | |
| GGTGGAGGTGGAAGAAGCGG+TGG | + | chr4_1:49385962-49385981 | Msa0552720:CDS | 65.0% | |
| AGTGGCGGTAGAGGTGGTCG+AGG | + | chr4_1:49386037-49386056 | Msa0552720:CDS | 65.0% | |
| GGTGGTCGAGGAGGAAGAGG+TGG | + | chr4_1:49386049-49386068 | Msa0552720:CDS | 65.0% | |
| CGAGGAGGAAGAGGTGGTCG+TGG | + | chr4_1:49386055-49386074 | Msa0552720:CDS | 65.0% | |
| GGAGGAAGAGGTGGTCGTGG+AGG | + | chr4_1:49386058-49386077 | Msa0552720:CDS | 65.0% | |
| GGCGGTAGAGGTGGTCGAGG+AGG | + | chr4_1:49386040-49386059 | Msa0552720:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 49381396 | 49386779 | 49381396 | ID=Msa0552720;Name=Msa0552720 |
| chr4_1 | mRNA | 49381396 | 49386779 | 49381396 | ID=Msa0552720-mRNA-1;Parent=Msa0552720;Name=Msa0552720-mRNA-1;_AED=0.05;_eAED=0.05;_QI=212|1|1|1|0.94|0.89|19|399|636 |
| chr4_1 | exon | 49381396 | 49381640 | 49381396 | ID=Msa0552720-mRNA-1:exon:13763;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49381734 | 49381782 | 49381734 | ID=Msa0552720-mRNA-1:exon:13764;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49382538 | 49382683 | 49382538 | ID=Msa0552720-mRNA-1:exon:13765;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49382804 | 49382941 | 49382804 | ID=Msa0552720-mRNA-1:exon:13766;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49383084 | 49383182 | 49383084 | ID=Msa0552720-mRNA-1:exon:13767;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49383339 | 49383449 | 49383339 | ID=Msa0552720-mRNA-1:exon:13768;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49383574 | 49383684 | 49383574 | ID=Msa0552720-mRNA-1:exon:13769;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49383800 | 49383898 | 49383800 | ID=Msa0552720-mRNA-1:exon:13770;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49384043 | 49384207 | 49384043 | ID=Msa0552720-mRNA-1:exon:13771;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49384416 | 49384505 | 49384416 | ID=Msa0552720-mRNA-1:exon:13772;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49384607 | 49384654 | 49384607 | ID=Msa0552720-mRNA-1:exon:13773;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49384747 | 49384835 | 49384747 | ID=Msa0552720-mRNA-1:exon:13774;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49384918 | 49385035 | 49384918 | ID=Msa0552720-mRNA-1:exon:13775;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49385151 | 49385242 | 49385151 | ID=Msa0552720-mRNA-1:exon:13776;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49385337 | 49385421 | 49385337 | ID=Msa0552720-mRNA-1:exon:13777;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49385539 | 49385633 | 49385539 | ID=Msa0552720-mRNA-1:exon:13778;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49385796 | 49386109 | 49385796 | ID=Msa0552720-mRNA-1:exon:13779;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49386322 | 49386634 | 49386322 | ID=Msa0552720-mRNA-1:exon:13780;Parent=Msa0552720-mRNA-1 |
| chr4_1 | exon | 49386665 | 49386779 | 49386665 | ID=Msa0552720-mRNA-1:exon:13781;Parent=Msa0552720-mRNA-1 |
| chr4_1 | five_prime_UTR | 49381396 | 49381607 | 49381396 | ID=Msa0552720-mRNA-1:five_prime_utr;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49381608 | 49381640 | 49381608 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49381734 | 49381782 | 49381734 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49382538 | 49382683 | 49382538 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49382804 | 49382941 | 49382804 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49383084 | 49383182 | 49383084 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49383339 | 49383449 | 49383339 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49383574 | 49383684 | 49383574 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49383800 | 49383898 | 49383800 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49384043 | 49384207 | 49384043 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49384416 | 49384505 | 49384416 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49384607 | 49384654 | 49384607 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49384747 | 49384835 | 49384747 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49384918 | 49385035 | 49384918 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49385151 | 49385242 | 49385151 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49385337 | 49385421 | 49385337 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49385539 | 49385633 | 49385539 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49385796 | 49386109 | 49385796 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | CDS | 49386322 | 49386350 | 49386322 | ID=Msa0552720-mRNA-1:cds;Parent=Msa0552720-mRNA-1 |
| chr4_1 | three_prime_UTR | 49386351 | 49386634 | 49386351 | ID=Msa0552720-mRNA-1:three_prime_utr;Parent=Msa0552720-mRNA-1 |
| chr4_1 | three_prime_UTR | 49386665 | 49386779 | 49386665 | ID=Msa0552720-mRNA-1:three_prime_utr;Parent=Msa0552720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
