AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0554110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554110 MtrunA17_Chr4g0039981 97.086 858 21 1 1 854 1 858 0.0 1621
Msa0554110 MtrunA17_Chr5g0395261 65.455 880 253 13 2 852 26 883 0.0 988
Msa0554110 MtrunA17_Chr3g0123761 30.966 352 216 5 312 663 83 407 2.53e-23 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554110 AT5G16730.1 52.336 856 361 17 20 854 24 853 0.0 638
Msa0554110 AT3G02930.1 51.575 857 361 15 1 854 1 806 0.0 598
Msa0554110 AT3G02930.3 51.575 857 361 15 1 854 1 806 0.0 598
Msa0554110 AT3G02930.2 51.526 852 361 14 6 854 2 804 0.0 598
Msa0554110 AT1G65010.1 53.440 625 288 2 33 656 30 652 4.78e-176 544
Msa0554110 AT4G27595.1 49.215 701 328 9 1 690 1 684 8.27e-170 525
Msa0554110 AT4G27595.2 49.420 690 327 8 6 690 3 675 3.17e-169 523
Msa0554110 AT4G40020.1 30.859 256 166 2 404 659 123 367 5.69e-14 76.3
Msa0554110 AT2G37080.1 32.461 191 97 7 17 206 17 176 9.82e-13 72.4
Msa0554110 AT2G37080.2 32.461 191 97 7 17 206 17 176 9.82e-13 72.4
Msa0554110 AT2G37080.3 31.579 190 98 6 17 206 17 174 1.66e-12 71.6

Find 181 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATGTTGTTTCTATTTC+TGG 0.107855 4_1:+51362168 None:intergenic
AAATTTGATATTTAAATATT+AGG 0.111752 4_1:+51361866 None:intergenic
AAAGCTTTGCTTGGAAAATT+TGG 0.148163 4_1:-51362221 Msa0554110:CDS
TTCATGCTCAGTGTGATTTC+TGG 0.166546 4_1:+51362739 None:intergenic
GCAAAATTCACGTCTTTCTT+TGG 0.217531 4_1:-51365443 Msa0554110:CDS
TGAAATTGGTTTGAAATTAT+TGG 0.226649 4_1:+51366324 None:intergenic
CTGCTTTCAACTTCAATATA+AGG 0.227623 4_1:+51363947 None:intergenic
TCAGAAAATTCAACGACTTT+AGG 0.228754 4_1:+51362674 None:intergenic
AATTTGATATTTAAATATTA+GGG 0.236212 4_1:+51361867 None:intergenic
GATTTGAAGTTAGTCTTAAA+AGG 0.240438 4_1:-51363235 Msa0554110:CDS
TTGCTAACTTTACTTACTTT+TGG 0.242464 4_1:+51365505 None:intergenic
TCAATGAATTGGAGAATTCT+AGG 0.267794 4_1:-51363396 Msa0554110:CDS
GAGAAACACAACAACAATTT+AGG 0.280321 4_1:+51366266 None:intergenic
GAGAGCTTTGATAAGATAAA+TGG 0.293654 4_1:-51362326 Msa0554110:CDS
GTAGTAACTTAGAAGAATTA+AGG 0.295745 4_1:+51366295 None:intergenic
CTGAAAGCCCTCATTTGAAT+TGG 0.300931 4_1:+51361891 None:intergenic
GAGTTGCACGATTGAGAAAA+AGG 0.311057 4_1:-51362426 Msa0554110:CDS
ATGGGCTTGTAATATTGTTT+AGG 0.313252 4_1:-51362030 Msa0554110:three_prime_UTR
TTCAGAACGCCGTCTTCTTA+TGG 0.322768 4_1:-51363569 Msa0554110:CDS
CTGAGCTTCTTCCTCCCTAT+TGG 0.336344 4_1:+51362979 None:intergenic
TCTTTGCTCTCATCTTCCTT+TGG 0.336435 4_1:+51362488 None:intergenic
GAAGAGAATGGTCATGGATA+TGG 0.341434 4_1:-51362653 Msa0554110:CDS
TACTTGTTACTTTGCTTCCA+TGG 0.346474 4_1:-51366181 Msa0554110:exon
GTTGCTTAGAAAATTCTCTT+TGG 0.347577 4_1:+51363294 None:intergenic
TCTGAACCCTTTGCAGCTCT+TGG 0.352340 4_1:+51364486 None:intergenic
GAAAGATAATGTGGCCTGTC+TGG 0.352818 4_1:-51366412 Msa0554110:five_prime_UTR
AAACAAACTCATCAATGAAT+TGG 0.355092 4_1:-51363407 Msa0554110:CDS
AATCACACTGAGCATGAAAA+TGG 0.356757 4_1:-51362734 Msa0554110:CDS
ACTTAGAAGAATTAAGGTTT+TGG 0.356945 4_1:+51366301 None:intergenic
GGAGGAGTTGTCAAAGTTAC+TGG 0.363861 4_1:-51362774 Msa0554110:CDS
AAAATTCCGAGCTGTTGAAT+TGG 0.371062 4_1:-51364271 Msa0554110:CDS
TGGCGACTCAGATGCTGATT+TGG 0.373526 4_1:+51365474 None:intergenic
CTCCACCTTCTTAATAGATT+CGG 0.374470 4_1:+51362793 None:intergenic
AGGAAGAATCAAATGCCAAT+AGG 0.380382 4_1:-51362994 Msa0554110:CDS
TTGCTACCAACATGATGATA+TGG 0.381455 4_1:+51361981 None:intergenic
AGGGAAAGCTCAACAACCTT+TGG 0.390841 4_1:+51362617 None:intergenic
TTCCTTAACTGCCTCAAGTT+CGG 0.393340 4_1:+51363498 None:intergenic
TTTGAGTTCTTCCTGATTGA+GGG 0.393979 4_1:+51362598 None:intergenic
TTTGAGCCACCAATGCTGCC+TGG 0.397662 4_1:+51364322 None:intergenic
CAATATAAGGTTATTATCAC+TGG 0.402454 4_1:+51363960 None:intergenic
GAAACTGAAGGAGAATATAT+TGG 0.409904 4_1:-51362876 Msa0554110:CDS
TGTTGCCGGTGGTGCTTTGT+TGG 0.413551 4_1:+51365528 None:intergenic
GCTGATTTCCGCTCAACAGC+TGG 0.414676 4_1:+51365391 None:intergenic
GCATGAAAATGGTGATCTTT+CGG 0.415307 4_1:-51362723 Msa0554110:CDS
ATCCGAACTTGAGGCAGTTA+AGG 0.419625 4_1:-51363500 Msa0554110:CDS
TGGTGCTTTGTTGGAATTGT+CGG 0.419748 4_1:+51365537 None:intergenic
GACTCAGTTTCCTTAGCCTC+TGG 0.429134 4_1:+51362374 None:intergenic
AGCTGAATTGACGCAGTTGA+AGG 0.430970 4_1:-51364013 Msa0554110:CDS
CTAACTTCAAATCTTCAATC+TGG 0.431089 4_1:+51363245 None:intergenic
CCGAGCTGTTGAATTGGAAC+AGG 0.431367 4_1:-51364265 Msa0554110:CDS
CATAGCTTTCCCTTTCAGCT+TGG 0.431387 4_1:+51363272 None:intergenic
TGTTGAGCTTTCCCTCAATC+AGG 0.432554 4_1:-51362609 Msa0554110:CDS
TCAGATGCTGATTTGGTCAC+TGG 0.435750 4_1:+51365481 None:intergenic
AGCAAAGGAGCAGATCCTTC+AGG 0.437690 4_1:-51364421 Msa0554110:CDS
GTTATAGAGAACATTGATAA+TGG 0.439389 4_1:-51362296 Msa0554110:CDS
GCCTCTGGAAGTTCTCTCTC+TGG 0.439649 4_1:+51362389 None:intergenic
GAGCTTCTCATTTGCTTCCT+CGG 0.442024 4_1:+51364344 None:intergenic
TGAAAGCCCTCATTTGAATT+GGG 0.443283 4_1:+51361892 None:intergenic
GTTTGAGTTCTTCCTGATTG+AGG 0.445779 4_1:+51362597 None:intergenic
CCTAAACCTGTGAAAATGAA+TGG 0.446361 4_1:-51362515 Msa0554110:CDS
TTCATGTGGTTGTTCCAGAC+AGG 0.448414 4_1:+51366398 None:intergenic
CCTTTAGAGCTTCCTGCAGA+TGG 0.449526 4_1:+51362918 None:intergenic
TGACATAAACAAGGAACAAA+TGG 0.457908 4_1:+51361916 None:intergenic
CCATCTGCAGGAAGCTCTAA+AGG 0.462254 4_1:-51362918 Msa0554110:CDS
GAGATCTGCATCAGAATCCT+TGG 0.462775 4_1:-51363722 Msa0554110:CDS
CTCAAGCTCCTCAGTGGTTG+AGG 0.472269 4_1:+51364149 None:intergenic
TCTAAGCAACCAAGCTGAAA+GGG 0.473285 4_1:-51363281 Msa0554110:CDS
GGAAGCTTGCTCAAGAAGAA+AGG 0.475338 4_1:-51362200 Msa0554110:CDS
GGAAGAATCAAATGCCAATA+GGG 0.476908 4_1:-51362993 Msa0554110:CDS
CCACTCCTCTAGCAGACTGT+TGG 0.480622 4_1:+51363798 None:intergenic
GGCTCAAAAGCAGGCTAAAG+AGG 0.482156 4_1:-51364307 Msa0554110:CDS
AAGAAGAAGAAAGCTTTGCT+TGG 0.483792 4_1:-51362230 Msa0554110:CDS
CATCAGCATGATTTAATGCC+TGG 0.490454 4_1:+51364085 None:intergenic
TGGCTTCAAAATCTAGTACT+AGG 0.491809 4_1:-51366161 Msa0554110:intron
ATCAATGTTCTCTATAACAG+TGG 0.492151 4_1:+51362301 None:intergenic
AGCATTGGTGGCTCAAAAGC+AGG 0.492354 4_1:-51364316 Msa0554110:CDS
AAAACGATGAACTCCGAGCT+AGG 0.492776 4_1:-51362820 Msa0554110:CDS
CTGCTTCATTACAGATTCCA+AGG 0.493723 4_1:+51363705 None:intergenic
GGAAGATGAGAGCAAAGAAA+AGG 0.493881 4_1:-51362483 Msa0554110:CDS
TTGAAATTATTGGAAGGAGA+AGG 0.495882 4_1:+51366334 None:intergenic
CCTTCTCCTTCTCAGCCTGA+AGG 0.496975 4_1:+51364406 None:intergenic
AGAAGCACAAAGAGTGGCCG+AGG 0.498602 4_1:-51364361 Msa0554110:CDS
GAAGCTCCAGGCAGCATTGG+TGG 0.499796 4_1:-51364328 Msa0554110:CDS
ACAAGCTCCAAGAGCTGCAA+AGG 0.501010 4_1:-51364493 Msa0554110:CDS
GAGAGAACTTCCAGAGGCTA+AGG 0.505746 4_1:-51362384 Msa0554110:CDS
TTCTAAGCAACCAAGCTGAA+AGG 0.505989 4_1:-51363282 Msa0554110:CDS
GCAGATCCTTCAGGCTGAGA+AGG 0.512353 4_1:-51364412 Msa0554110:CDS
ATGTCATCCCAATTCAAATG+AGG 0.512668 4_1:-51361899 Msa0554110:three_prime_UTR
TGAGAAGCTCCAGGCAGCAT+TGG 0.514376 4_1:-51364331 Msa0554110:CDS
GAGAATGGTCATGGATATGG+AGG 0.517496 4_1:-51362650 Msa0554110:CDS
TAGATTCGGCTTCCCTAGCT+CGG 0.520735 4_1:+51362807 None:intergenic
AGTTGAGGAACTAGAAATGA+GGG 0.521126 4_1:-51363767 Msa0554110:CDS
GACCGAGGCGATCCATCTGC+AGG 0.524077 4_1:-51362930 Msa0554110:CDS
TGAAGAAGAGAATGCGGCCG+CGG 0.524949 4_1:-51363059 Msa0554110:CDS
TTCTTGTGTTGAATCTAGCA+AGG 0.527152 4_1:+51363990 None:intergenic
TGTCATCCCAATTCAAATGA+GGG 0.527827 4_1:-51361898 Msa0554110:three_prime_UTR
GGTTGAAGAATCAAACAAGT+TGG 0.530427 4_1:-51363746 Msa0554110:CDS
CAATTCCAACAAAGCACCAC+CGG 0.535286 4_1:-51365533 Msa0554110:CDS
GGAAGCAAATGAGAAGCTCC+AGG 0.537000 4_1:-51364340 Msa0554110:CDS
AACCACTGAGGAGCTTGAGC+GGG 0.538320 4_1:-51364145 Msa0554110:CDS
CTCAGTGGTTGAGGCAAGAG+TGG 0.539143 4_1:+51364158 None:intergenic
GGAGGAAGAAGCTCAGTTGA+AGG 0.540259 4_1:-51362972 Msa0554110:CDS
TGAATAAGAAGGAAGAAGAA+TGG 0.541280 4_1:-51364227 Msa0554110:CDS
AAGTTGAGGAACTAGAAATG+AGG 0.541760 4_1:-51363768 Msa0554110:CDS
AGTTAAGGAAGAGAAAGATC+AGG 0.542809 4_1:-51363485 Msa0554110:CDS
TGCTACTCTTAAAGAGAAGG+TGG 0.543694 4_1:-51363638 Msa0554110:CDS
TGATCTTTCGGACAGCGAAA+AGG 0.544136 4_1:-51362711 Msa0554110:CDS
ACGCCGTCTTCTTATGGCTA+AGG 0.545598 4_1:-51363563 Msa0554110:CDS
GCTGTTGAATTGGAACAGGC+TGG 0.548085 4_1:-51364261 Msa0554110:CDS
TGGCCACATCCAAGGCATGC+TGG 0.548388 4_1:+51364178 None:intergenic
GGCTTTGAATTCACAGATCG+TGG 0.550956 4_1:+51365412 None:intergenic
ATTGGTTTGAAATTATTGGA+AGG 0.551236 4_1:+51366328 None:intergenic
TGTGAGGAACCAGCATGCCT+TGG 0.551371 4_1:-51364187 Msa0554110:CDS
CAATGAATTGGAGAATTCTA+GGG 0.553198 4_1:-51363395 Msa0554110:CDS
GGTTCTCCATATCATCATGT+TGG 0.555729 4_1:-51361987 Msa0554110:three_prime_UTR
AATTGAAACTGTGAATAAGA+AGG 0.556477 4_1:-51364238 Msa0554110:CDS
CAACCACTGAGGAGCTTGAG+CGG 0.561441 4_1:-51364146 Msa0554110:CDS
CTTCCTTAGCCATAAGAAGA+CGG 0.564152 4_1:+51363560 None:intergenic
CTATTATGGCTTACATCAGG+TGG 0.565172 4_1:+51365352 None:intergenic
ACTGAGTCAAAGACAGAAGA+AGG 0.566826 4_1:-51362359 Msa0554110:CDS
TACTTTCTCAGCATGAACCT+CGG 0.567598 4_1:+51364047 None:intergenic
TGAAAAGTCAAAGAAGATTG+AGG 0.568592 4_1:-51363530 Msa0554110:CDS
TGGTCATGGATATGGAGGAG+AGG 0.569474 4_1:-51362645 Msa0554110:CDS
TATTATGGCTTACATCAGGT+GGG 0.570656 4_1:+51365353 None:intergenic
GGAAGCCGAATCTATTAAGA+AGG 0.570744 4_1:-51362798 Msa0554110:CDS
GGCAAGAGTGGCCACATCCA+AGG 0.575724 4_1:+51364170 None:intergenic
AAGAAGTAGAATTCAAAATG+TGG 0.576268 4_1:-51362451 Msa0554110:CDS
AAACGATGAACTCCGAGCTA+GGG 0.576737 4_1:-51362819 Msa0554110:CDS
AGAAGTAGAATTCAAAATGT+GGG 0.576995 4_1:-51362450 Msa0554110:CDS
TGAGAACTCGAAGGCTGAGT+GGG 0.577593 4_1:-51363122 Msa0554110:CDS
GTTCTTAGCATCACACATCA+TGG 0.582449 4_1:+51364107 None:intergenic
AGCTGCTACTCTTAAAGAGA+AGG 0.582698 4_1:-51363641 Msa0554110:CDS
CATAAACAAGGAACAAATGG+TGG 0.583214 4_1:+51361919 None:intergenic
ATAGAGAACATTGATAATGG+TGG 0.585848 4_1:-51362293 Msa0554110:CDS
GCTTTGTTGGAATTGTCGGA+TGG 0.586226 4_1:+51365541 None:intergenic
AACGGTTAAGAAAGATAATG+TGG 0.587116 4_1:-51366421 Msa0554110:five_prime_UTR
AGAAGATCTAAAGAAAGCAA+AGG 0.589350 4_1:-51364436 Msa0554110:CDS
ATGTAGAACTTGAAACCTCA+AGG 0.589981 4_1:-51363837 Msa0554110:CDS
GAACCAGCATGCCTTGGATG+TGG 0.590468 4_1:-51364181 Msa0554110:CDS
TGATAATGGTGGAAGCTCAC+CGG 0.591299 4_1:-51362282 Msa0554110:CDS
AAGACAGAAGAAGGTGGTGA+TGG 0.591342 4_1:-51362350 Msa0554110:CDS
AGGGAATGAGTTATGATGAG+AGG 0.592178 4_1:-51363894 Msa0554110:CDS
GCGTTCTGAATCCTCAAGAT+CGG 0.596202 4_1:+51363582 None:intergenic
GGCTCTTGAATCCGAACTTG+AGG 0.596607 4_1:-51363509 Msa0554110:CDS
CGAATCTATTAAGAAGGTGG+AGG 0.596983 4_1:-51362792 Msa0554110:CDS
TCAGTTGAAGGAAAATCTGA+AGG 0.598448 4_1:-51362960 Msa0554110:CDS
CAAGCTCCAAGAGCTGCAAA+GGG 0.600838 4_1:-51364492 Msa0554110:CDS
CCTGTTCCAATTCAACAGCT+CGG 0.607837 4_1:+51364265 None:intergenic
GTCTGAGAACGTGAAACTGA+AGG 0.607986 4_1:-51362888 Msa0554110:CDS
CCTTCAGGCTGAGAAGGAGA+AGG 0.610724 4_1:-51364406 Msa0554110:CDS
AGCCGAATCTATTAAGAAGG+TGG 0.611971 4_1:-51362795 Msa0554110:CDS
GAAAATGAATGGAAAACCAA+AGG 0.613917 4_1:-51362504 Msa0554110:CDS
TTATGCCAACAGTCTGCTAG+AGG 0.620146 4_1:-51363803 Msa0554110:CDS
ATGGCTTACATCAGGTGGGG+TGG 0.623560 4_1:+51365357 None:intergenic
GAATGTGTTTGAGAACTCGA+AGG 0.623748 4_1:-51363131 Msa0554110:CDS
TAATAGGGTCTGCACATGAG+AGG 0.625836 4_1:+51363438 None:intergenic
TTCCTGCAGATGGATCGCCT+CGG 0.629528 4_1:+51362928 None:intergenic
CCAACAGTCTGCTAGAGGAG+TGG 0.633139 4_1:-51363798 Msa0554110:CDS
AACCCGCTCAAGCTCCTCAG+TGG 0.633744 4_1:+51364143 None:intergenic
CTCAAGAAAGAACTCGACAA+GGG 0.633999 4_1:-51363913 Msa0554110:CDS
TCTCAAGAAAGAACTCGACA+AGG 0.634380 4_1:-51363914 Msa0554110:CDS
ATAAGATTCAGCCGTCCTTG+AGG 0.636404 4_1:+51363822 None:intergenic
TTATTTGCTTAAACAAACTG+AGG 0.648313 4_1:-51363014 Msa0554110:CDS
ATTATGGCTTACATCAGGTG+GGG 0.650435 4_1:+51365354 None:intergenic
TCTGAAGGAAGTTGAGACCG+AGG 0.650712 4_1:-51362945 Msa0554110:CDS
TTGAGAACTCGAAGGCTGAG+TGG 0.651278 4_1:-51363123 Msa0554110:CDS
AGAATCAAATGCCAATAGGG+AGG 0.651414 4_1:-51362990 Msa0554110:CDS
GTTGAAAGAAGCACAAAGAG+TGG 0.652851 4_1:-51364367 Msa0554110:CDS
TGGAGGAGAGGAAATTCCAA+AGG 0.653330 4_1:-51362633 Msa0554110:CDS
GAATTGGGATGACATAAACA+AGG 0.659304 4_1:+51361907 None:intergenic
ATTCAAAGCCAGCTGTTGAG+CGG 0.660562 4_1:-51365399 Msa0554110:CDS
GCTACTCTTAAAGAGAAGGT+GGG 0.661481 4_1:-51363637 Msa0554110:CDS
AGCTTGCTCAAGAAGAAAGG+TGG 0.662119 4_1:-51362197 Msa0554110:CDS
GAAAACTGAAGAAGAGAATG+CGG 0.663328 4_1:-51363065 Msa0554110:CDS
AGTCAATGCTTGATGAAGCG+CGG 0.666394 4_1:-51363195 Msa0554110:CDS
TGATGCAGCTAAAGTTGCCG+AGG 0.669959 4_1:-51364064 Msa0554110:CDS
AGAACTTGAAACCTCAAGGA+CGG 0.671436 4_1:-51363833 Msa0554110:CDS
CACTCTTGCCTCAACCACTG+AGG 0.695834 4_1:-51364157 Msa0554110:CDS
ACCAGAGAGAGAACTTCCAG+AGG 0.698874 4_1:-51362390 Msa0554110:CDS
GATGTGTGATGCTAAGAACC+AGG 0.701568 4_1:-51364103 Msa0554110:CDS
GAGTCAAAGACAGAAGAAGG+TGG 0.711580 4_1:-51362356 Msa0554110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTAAAACAAAAAAAAAA+TGG + chr4_1:51362315-51362334 None:intergenic 10.0%
!!! AATATAGATTTTATAAGAAA+TGG - chr4_1:51366315-51366334 Msa0554110:five_prime_UTR 10.0%
!!! ATATAGATTTTATAAGAAAT+GGG - chr4_1:51366316-51366335 Msa0554110:five_prime_UTR 10.0%
!!! TTTTTTGTTTTACTTTTTGT+CGG - chr4_1:51362319-51362338 Msa0554110:CDS 15.0%
!!! ACTAAATTTTTAATCTTTCA+TGG - chr4_1:51362407-51362426 Msa0554110:CDS 15.0%
!! AAAAATAGTAATTGAAATGA+AGG + chr4_1:51363118-51363137 None:intergenic 15.0%
!!! TTCATTTCAATTACTATTTT+TGG - chr4_1:51363117-51363136 Msa0554110:CDS 15.0%
!!! TCATTTCAATTACTATTTTT+GGG - chr4_1:51363118-51363137 Msa0554110:CDS 15.0%
!!! TAATAATTTGACATTTTTGT+GGG - chr4_1:51363239-51363258 Msa0554110:CDS 15.0%
!!! AATATTGTTTAGGATTTTTT+TGG - chr4_1:51366344-51366363 Msa0554110:five_prime_UTR 15.0%
!!! TGAAATTGGTTTGAAATTAT+TGG + chr4_1:51362043-51362062 None:intergenic 20.0%
!!! TTTTTTTGTTGAACTATGAA+TGG + chr4_1:51362151-51362170 None:intergenic 20.0%
!! TCTATGTACAATTCAAAAAT+TGG - chr4_1:51362492-51362511 Msa0554110:CDS 20.0%
!! CTATGTACAATTCAAAAATT+GGG - chr4_1:51362493-51362512 Msa0554110:CDS 20.0%
!! CAACAATGTATTGTAAAATA+AGG + chr4_1:51362591-51362610 None:intergenic 20.0%
!!! AAATAAGAATTGTTTTCTTG+TGG - chr4_1:51362675-51362694 Msa0554110:CDS 20.0%
!!! CTAATAATTTGACATTTTTG+TGG - chr4_1:51363238-51363257 Msa0554110:CDS 20.0%
!!! AATAATTTGACATTTTTGTG+GGG - chr4_1:51363240-51363259 Msa0554110:CDS 20.0%
!! ATTCTGTAATGTCTATTATA+TGG - chr4_1:51363302-51363321 Msa0554110:CDS 20.0%
!! GTAAAATACTGTTAAACATA+AGG + chr4_1:51363362-51363381 None:intergenic 20.0%
!!! TTTGTTTTTCTCTTCTAATA+GGG + chr4_1:51364944-51364963 None:intergenic 20.0%
!! GGAAAAAGAAATAAATAGAT+TGG - chr4_1:51365326-51365345 Msa0554110:intron 20.0%
!!! ATTGGTTTGAAATTATTGGA+AGG + chr4_1:51362039-51362058 None:intergenic 25.0%
!!! AATTAAGGTTTTGGTGAAAT+TGG + chr4_1:51362057-51362076 None:intergenic 25.0%
!! ACTTAGAAGAATTAAGGTTT+TGG + chr4_1:51362066-51362085 None:intergenic 25.0%
! GTAGTAACTTAGAAGAATTA+AGG + chr4_1:51362072-51362091 None:intergenic 25.0%
!!! TGTAATTTGTTTTTTGCTTG+AGG - chr4_1:51362342-51362361 Msa0554110:CDS 25.0%
! CTAGTAATTATGATATGCTA+TGG - chr4_1:51362374-51362393 Msa0554110:CDS 25.0%
!! ATGTTCATCTGTTGAAATTT+TGG - chr4_1:51362447-51362466 Msa0554110:CDS 25.0%
!! TGATTTTGTACAATTAAGCT+TGG - chr4_1:51362561-51362580 Msa0554110:CDS 25.0%
! TCAATTTCCAATCAAATAGA+TGG + chr4_1:51362708-51362727 None:intergenic 25.0%
!!! TTGTGTTTTGTTATCTTGAA+TGG - chr4_1:51362737-51362756 Msa0554110:CDS 25.0%
!! TTGCTAACTTTACTTACTTT+TGG + chr4_1:51362862-51362881 None:intergenic 25.0%
! ACACTAAATGCAATCTATTA+TGG + chr4_1:51363029-51363048 None:intergenic 25.0%
! AATAGACATTACAGAATGAA+AGG + chr4_1:51363299-51363318 None:intergenic 25.0%
! TGTAATGTCTATTATATGGT+TGG - chr4_1:51363306-51363325 Msa0554110:CDS 25.0%
! TAAGTAAAAACAAGTGACAT+GGG + chr4_1:51363653-51363672 None:intergenic 25.0%
! TTAAGTAAAAACAAGTGACA+TGG + chr4_1:51363654-51363673 None:intergenic 25.0%
! TGTACTTATTATGTATTGCT+TGG - chr4_1:51363836-51363855 Msa0554110:CDS 25.0%
! AATTGAAACTGTGAATAAGA+AGG - chr4_1:51364126-51364145 Msa0554110:CDS 25.0%
! CAATATAAGGTTATTATCAC+TGG + chr4_1:51364407-51364426 None:intergenic 25.0%
!!! GTTTGTTTTTCTCTTCTAAT+AGG + chr4_1:51364945-51364964 None:intergenic 25.0%
! AAACAAACTCATCAATGAAT+TGG - chr4_1:51364957-51364976 Msa0554110:intron 25.0%
! AGAAGAAGAAAAAAGCAAAA+AGG - chr4_1:51364993-51365012 Msa0554110:intron 25.0%
!!! GATTTGAAGTTAGTCTTAAA+AGG - chr4_1:51365129-51365148 Msa0554110:intron 25.0%
!!! TCTATTTATTTCTTTTTCCG+CGG + chr4_1:51365325-51365344 None:intergenic 25.0%
! TTATTTGCTTAAACAAACTG+AGG - chr4_1:51365350-51365369 Msa0554110:intron 25.0%
!! ATTTTGAATTCTACTTCTTC+TGG + chr4_1:51365912-51365931 None:intergenic 25.0%
! AAGAAGTAGAATTCAAAATG+TGG - chr4_1:51365913-51365932 Msa0554110:intron 25.0%
! AGAAGTAGAATTCAAAATGT+GGG - chr4_1:51365914-51365933 Msa0554110:intron 25.0%
! GTTATAGAGAACATTGATAA+TGG - chr4_1:51366068-51366087 Msa0554110:intron 25.0%
!!! TTGAATGTTGTTTCTATTTC+TGG + chr4_1:51366199-51366218 None:intergenic 25.0%
ATGTGAGAGAGAAAAAAGAA+CGG - chr4_1:51361925-51361944 Msa0554110:three_prime_UTR 30.0%
AACGGTTAAGAAAGATAATG+TGG - chr4_1:51361943-51361962 Msa0554110:three_prime_UTR 30.0%
!!! AAATTGAGTTGGTTTTCATG+TGG + chr4_1:51361983-51362002 None:intergenic 30.0%
CAGAAACTGAAAAATTGAGT+TGG + chr4_1:51361994-51362013 None:intergenic 30.0%
TTGAAATTATTGGAAGGAGA+AGG + chr4_1:51362033-51362052 None:intergenic 30.0%
GAGAAACACAACAACAATTT+AGG + chr4_1:51362101-51362120 None:intergenic 30.0%
TATGCTGTTAAGATCTGAAT+TGG - chr4_1:51362262-51362281 Msa0554110:CDS 30.0%
ATGCTGTTAAGATCTGAATT+GGG - chr4_1:51362263-51362282 Msa0554110:CDS 30.0%
!!! AATTTGTTTTTTGCTTGAGG+AGG - chr4_1:51362345-51362364 Msa0554110:CDS 30.0%
AATTAAGCATCCAGAATCAT+TGG + chr4_1:51362653-51362672 None:intergenic 30.0%
CTTAGATCCATCTATTTGAT+TGG - chr4_1:51362698-51362717 Msa0554110:CDS 30.0%
!!! GAATGGTGTGTTACTTTTAA+TGG - chr4_1:51362754-51362773 Msa0554110:CDS 30.0%
AATCTATTATGGCTTACATC+AGG + chr4_1:51363018-51363037 None:intergenic 30.0%
TGTCTATTATATGGTTGGAT+TGG - chr4_1:51363311-51363330 Msa0554110:CDS 30.0%
!! TATTATATGGTTGGATTGGT+TGG - chr4_1:51363315-51363334 Msa0554110:CDS 30.0%
AATACTGTTAAACATAAGGC+AGG + chr4_1:51363358-51363377 None:intergenic 30.0%
CACTAGATATTTGAATCAAC+TGG + chr4_1:51363426-51363445 None:intergenic 30.0%
AATTGACAGCAAAAAAGAAG+TGG + chr4_1:51363537-51363556 None:intergenic 30.0%
GATTCAAGTCATAAACCAAA+TGG + chr4_1:51363586-51363605 None:intergenic 30.0%
AGTAAAATTCGACTCTTGAT+TGG - chr4_1:51363714-51363733 Msa0554110:CDS 30.0%
GTAAAATTCGACTCTTGATT+GGG - chr4_1:51363715-51363734 Msa0554110:CDS 30.0%
! TTATCATGCTCTCTTTTGAA+AGG - chr4_1:51363798-51363817 Msa0554110:CDS 30.0%
AGAAGATCTAAAGAAAGCAA+AGG - chr4_1:51363928-51363947 Msa0554110:CDS 30.0%
TGAATAAGAAGGAAGAAGAA+TGG - chr4_1:51364137-51364156 Msa0554110:CDS 30.0%
CTGCTTTCAACTTCAATATA+AGG + chr4_1:51364420-51364439 None:intergenic 30.0%
TGAAAAGTCAAAGAAGATTG+AGG - chr4_1:51364834-51364853 Msa0554110:intron 30.0%
TCAATGAATTGGAGAATTCT+AGG - chr4_1:51364968-51364987 Msa0554110:intron 30.0%
CAATGAATTGGAGAATTCTA+GGG - chr4_1:51364969-51364988 Msa0554110:intron 30.0%
AGAAAAAAGCAAAAAGGCAA+TGG - chr4_1:51364999-51365018 Msa0554110:intron 30.0%
GTTGCTTAGAAAATTCTCTT+TGG + chr4_1:51365073-51365092 None:intergenic 30.0%
CTAACTTCAAATCTTCAATC+TGG + chr4_1:51365122-51365141 None:intergenic 30.0%
! TCTCTTCTTCAGTTTTCTTT+AGG + chr4_1:51365296-51365315 None:intergenic 30.0%
GAAACTGAAGGAGAATATAT+TGG - chr4_1:51365488-51365507 Msa0554110:CDS 30.0%
TCAGAAAATTCAACGACTTT+AGG + chr4_1:51365693-51365712 None:intergenic 30.0%
!! GTTGAATTTTCTGAAGAGAA+TGG - chr4_1:51365699-51365718 Msa0554110:intron 30.0%
GAAAATGAATGGAAAACCAA+AGG - chr4_1:51365860-51365879 Msa0554110:intron 30.0%
! GAGAGCTTTGATAAGATAAA+TGG - chr4_1:51366038-51366057 Msa0554110:intron 30.0%
ATCAATGTTCTCTATAACAG+TGG + chr4_1:51366066-51366085 None:intergenic 30.0%
!! ATAGAGAACATTGATAATGG+TGG - chr4_1:51366071-51366090 Msa0554110:intron 30.0%
!! TGTTGTTGTTCTTCTTTTAC+CGG + chr4_1:51366104-51366123 None:intergenic 30.0%
AAAGCTTTGCTTGGAAAATT+TGG - chr4_1:51366143-51366162 Msa0554110:intron 30.0%
ATGGGCTTGTAATATTGTTT+AGG - chr4_1:51366334-51366353 Msa0554110:five_prime_UTR 30.0%
!!! GTTTAGGATTTTTTTGGCTT+TGG - chr4_1:51366350-51366369 Msa0554110:five_prime_UTR 30.0%
! AATGGTGGAAAAAGAATAGT+TGG + chr4_1:51366433-51366452 None:intergenic 30.0%
TGACATAAACAAGGAACAAA+TGG + chr4_1:51366451-51366470 None:intergenic 30.0%
!! TACTTGTTACTTTGCTTCCA+TGG - chr4_1:51362183-51362202 Msa0554110:CDS 35.0%
!!! AGTACTAGATTTTGAAGCCA+TGG + chr4_1:51362203-51362222 None:intergenic 35.0%
TGGCTTCAAAATCTAGTACT+AGG - chr4_1:51362203-51362222 Msa0554110:CDS 35.0%
! AGTACTAGGTTAGTCAAGTT+TGG - chr4_1:51362217-51362236 Msa0554110:CDS 35.0%
!!! TTACTTACTTTTGGTGTTGC+CGG + chr4_1:51362853-51362872 None:intergenic 35.0%
! GAAAGACGTGAATTTTGCAA+CGG + chr4_1:51362919-51362938 None:intergenic 35.0%
GCAAAATTCACGTCTTTCTT+TGG - chr4_1:51362921-51362940 Msa0554110:CDS 35.0%
TATTATGGCTTACATCAGGT+GGG + chr4_1:51363014-51363033 None:intergenic 35.0%
TTCAGTAGACTTGAGATGTT+AGG + chr4_1:51363161-51363180 None:intergenic 35.0%
! GTCTACTGAAAAGTGTGATA+AGG - chr4_1:51363171-51363190 Msa0554110:CDS 35.0%
! TGGTTGGCTATACTAAGTTT+AGG + chr4_1:51363517-51363536 None:intergenic 35.0%
!! AGCTCGGAATTTTTCAATCT+CGG + chr4_1:51364086-51364105 None:intergenic 35.0%
AAAATTCCGAGCTGTTGAAT+TGG - chr4_1:51364093-51364112 Msa0554110:CDS 35.0%
! AAAAAGAGCTTGAAAGTGTG+AGG - chr4_1:51364161-51364180 Msa0554110:CDS 35.0%
TTCTTGTGTTGAATCTAGCA+AGG + chr4_1:51364377-51364396 None:intergenic 35.0%
ATGTAGAACTTGAAACCTCA+AGG - chr4_1:51364527-51364546 Msa0554110:intron 35.0%
AAGTTGAGGAACTAGAAATG+AGG - chr4_1:51364596-51364615 Msa0554110:intron 35.0%
AGTTGAGGAACTAGAAATGA+GGG - chr4_1:51364597-51364616 Msa0554110:intron 35.0%
GGTTGAAGAATCAAACAAGT+TGG - chr4_1:51364618-51364637 Msa0554110:intron 35.0%
AGTTAAGGAAGAGAAAGATC+AGG - chr4_1:51364879-51364898 Msa0554110:intron 35.0%
GAAAACTGAAGAAGAGAATG+CGG - chr4_1:51365299-51365318 Msa0554110:intron 35.0%
AGGAAGAATCAAATGCCAAT+AGG - chr4_1:51365370-51365389 Msa0554110:CDS 35.0%
GGAAGAATCAAATGCCAATA+GGG - chr4_1:51365371-51365390 Msa0554110:CDS 35.0%
TCAGTTGAAGGAAAATCTGA+AGG - chr4_1:51365404-51365423 Msa0554110:CDS 35.0%
CTCCACCTTCTTAATAGATT+CGG + chr4_1:51365574-51365593 None:intergenic 35.0%
AATCACACTGAGCATGAAAA+TGG - chr4_1:51365630-51365649 Msa0554110:intron 35.0%
GCATGAAAATGGTGATCTTT+CGG - chr4_1:51365641-51365660 Msa0554110:intron 35.0%
!! TTTTCTGAAGAGAATGGTCA+TGG - chr4_1:51365705-51365724 Msa0554110:intron 35.0%
! TTTGAGTTCTTCCTGATTGA+GGG + chr4_1:51365769-51365788 None:intergenic 35.0%
! CCATTCATTTTCACAGGTTT+AGG + chr4_1:51365852-51365871 None:intergenic 35.0%
CCTAAACCTGTGAAAATGAA+TGG - chr4_1:51365849-51365868 Msa0554110:intron 35.0%
! GGTTTTCCATTCATTTTCAC+AGG + chr4_1:51365858-51365877 None:intergenic 35.0%
AAGAAGAAGAAAGCTTTGCT+TGG - chr4_1:51366134-51366153 Msa0554110:intron 35.0%
!!! GATTTTTTTGGCTTTGGTTG+TGG - chr4_1:51366356-51366375 Msa0554110:five_prime_UTR 35.0%
TTGCTACCAACATGATGATA+TGG + chr4_1:51366386-51366405 None:intergenic 35.0%
CATAAACAAGGAACAAATGG+TGG + chr4_1:51366448-51366467 None:intergenic 35.0%
GAATTGGGATGACATAAACA+AGG + chr4_1:51366460-51366479 None:intergenic 35.0%
ATGTCATCCCAATTCAAATG+AGG - chr4_1:51366465-51366484 Msa0554110:five_prime_UTR 35.0%
TGTCATCCCAATTCAAATGA+GGG - chr4_1:51366466-51366485 Msa0554110:five_prime_UTR 35.0%
TGAAAGCCCTCATTTGAATT+GGG + chr4_1:51366475-51366494 None:intergenic 35.0%
!! GCTGTTGTTTCCAATGATTC+TGG - chr4_1:51362640-51362659 Msa0554110:CDS 40.0%
! TGGTGCTTTGTTGGAATTGT+CGG + chr4_1:51362830-51362849 None:intergenic 40.0%
ATTATGGCTTACATCAGGTG+GGG + chr4_1:51363013-51363032 None:intergenic 40.0%
CTATTATGGCTTACATCAGG+TGG + chr4_1:51363015-51363034 None:intergenic 40.0%
TATCGAATCGAGATACGACT+TGG + chr4_1:51363392-51363411 None:intergenic 40.0%
TAGGCAGAGATTCGTTAGAA+TGG + chr4_1:51363498-51363517 None:intergenic 40.0%
GACAGCAAAAAAGAAGTGGT+TGG + chr4_1:51363533-51363552 None:intergenic 40.0%
! GACACTTCTCTTTTGCCATT+TGG - chr4_1:51363568-51363587 Msa0554110:CDS 40.0%
! GTTGAAAGAAGCACAAAGAG+TGG - chr4_1:51363997-51364016 Msa0554110:CDS 40.0%
GTTCTTAGCATCACACATCA+TGG + chr4_1:51364260-51364279 None:intergenic 40.0%
CATCAGCATGATTTAATGCC+TGG + chr4_1:51364282-51364301 None:intergenic 40.0%
TACTTTCTCAGCATGAACCT+CGG + chr4_1:51364320-51364339 None:intergenic 40.0%
TCTCAAGAAAGAACTCGACA+AGG - chr4_1:51364450-51364469 Msa0554110:CDS 40.0%
CTCAAGAAAGAACTCGACAA+GGG - chr4_1:51364451-51364470 Msa0554110:CDS 40.0%
AGGGAATGAGTTATGATGAG+AGG - chr4_1:51364470-51364489 Msa0554110:CDS 40.0%
AGAACTTGAAACCTCAAGGA+CGG - chr4_1:51364531-51364550 Msa0554110:intron 40.0%
GGAGTGGAAAAAGAAAGTTG+AGG - chr4_1:51364582-51364601 Msa0554110:intron 40.0%
CTGCTTCATTACAGATTCCA+AGG + chr4_1:51364662-51364681 None:intergenic 40.0%
AGCTGCTACTCTTAAAGAGA+AGG - chr4_1:51364723-51364742 Msa0554110:intron 40.0%
TGCTACTCTTAAAGAGAAGG+TGG - chr4_1:51364726-51364745 Msa0554110:intron 40.0%
GCTACTCTTAAAGAGAAGGT+GGG - chr4_1:51364727-51364746 Msa0554110:intron 40.0%
CTTCCTTAGCCATAAGAAGA+CGG + chr4_1:51364807-51364826 None:intergenic 40.0%
TTCCTTAACTGCCTCAAGTT+CGG + chr4_1:51364869-51364888 None:intergenic 40.0%
TTCTAAGCAACCAAGCTGAA+AGG - chr4_1:51365082-51365101 Msa0554110:intron 40.0%
TCTAAGCAACCAAGCTGAAA+GGG - chr4_1:51365083-51365102 Msa0554110:intron 40.0%
GAATGTGTTTGAGAACTCGA+AGG - chr4_1:51365233-51365252 Msa0554110:intron 40.0%
AGAATCAAATGCCAATAGGG+AGG - chr4_1:51365374-51365393 Msa0554110:CDS 40.0%
GGAAGCCGAATCTATTAAGA+AGG - chr4_1:51365566-51365585 Msa0554110:intron 40.0%
AGCCGAATCTATTAAGAAGG+TGG - chr4_1:51365569-51365588 Msa0554110:intron 40.0%
CGAATCTATTAAGAAGGTGG+AGG - chr4_1:51365572-51365591 Msa0554110:intron 40.0%
TTCATGCTCAGTGTGATTTC+TGG + chr4_1:51365628-51365647 None:intergenic 40.0%
GAAGAGAATGGTCATGGATA+TGG - chr4_1:51365711-51365730 Msa0554110:intron 40.0%
! GTTTGAGTTCTTCCTGATTG+AGG + chr4_1:51365770-51365789 None:intergenic 40.0%
TCTTTGCTCTCATCTTCCTT+TGG + chr4_1:51365879-51365898 None:intergenic 40.0%
GGAAGATGAGAGCAAAGAAA+AGG - chr4_1:51365881-51365900 Msa0554110:intron 40.0%
GAGTTGCACGATTGAGAAAA+AGG - chr4_1:51365938-51365957 Msa0554110:intron 40.0%
ACTGAGTCAAAGACAGAAGA+AGG - chr4_1:51366005-51366024 Msa0554110:intron 40.0%
GGTTCTCCATATCATCATGT+TGG - chr4_1:51366377-51366396 Msa0554110:five_prime_UTR 40.0%
CTGAAAGCCCTCATTTGAAT+TGG + chr4_1:51366476-51366495 None:intergenic 40.0%
GAAAGATAATGTGGCCTGTC+TGG - chr4_1:51361952-51361971 Msa0554110:three_prime_UTR 45.0%
TTCATGTGGTTGTTCCAGAC+AGG + chr4_1:51361969-51361988 None:intergenic 45.0%
! GCTTTGTTGGAATTGTCGGA+TGG + chr4_1:51362826-51362845 None:intergenic 45.0%
! CAATTCCAACAAAGCACCAC+CGG - chr4_1:51362831-51362850 Msa0554110:CDS 45.0%
!! TCAGATGCTGATTTGGTCAC+TGG + chr4_1:51362886-51362905 None:intergenic 45.0%
! CGTGAATTTTGCAACGGAGA+TGG + chr4_1:51362913-51362932 None:intergenic 45.0%
!! GGCTTTGAATTCACAGATCG+TGG + chr4_1:51362955-51362974 None:intergenic 45.0%
ATTCAAAGCCAGCTGTTGAG+CGG - chr4_1:51362965-51362984 Msa0554110:CDS 45.0%
! GGAAACATCTGAGATGTGCA+AGG - chr4_1:51363192-51363211 Msa0554110:CDS 45.0%
TAAGGCAGGAACATCTTCAG+CGG + chr4_1:51363344-51363363 None:intergenic 45.0%
GAGCTTCTCATTTGCTTCCT+CGG + chr4_1:51364023-51364042 None:intergenic 45.0%
CCTGTTCCAATTCAACAGCT+CGG + chr4_1:51364102-51364121 None:intergenic 45.0%
GATGTGTGATGCTAAGAACC+AGG - chr4_1:51364261-51364280 Msa0554110:CDS 45.0%
AGCTGAATTGACGCAGTTGA+AGG - chr4_1:51364351-51364370 Msa0554110:CDS 45.0%
ATAAGATTCAGCCGTCCTTG+AGG + chr4_1:51364545-51364564 None:intergenic 45.0%
TTATGCCAACAGTCTGCTAG+AGG - chr4_1:51364561-51364580 Msa0554110:intron 45.0%
GAGATCTGCATCAGAATCCT+TGG - chr4_1:51364642-51364661 Msa0554110:intron 45.0%
GAGACAAAAAGCCGATCTTG+AGG - chr4_1:51364771-51364790 Msa0554110:intron 45.0%
! GCGTTCTGAATCCTCAAGAT+CGG + chr4_1:51364785-51364804 None:intergenic 45.0%
TTCAGAACGCCGTCTTCTTA+TGG - chr4_1:51364795-51364814 Msa0554110:intron 45.0%
ATCCGAACTTGAGGCAGTTA+AGG - chr4_1:51364864-51364883 Msa0554110:intron 45.0%
TAATAGGGTCTGCACATGAG+AGG + chr4_1:51364929-51364948 None:intergenic 45.0%
CATAGCTTTCCCTTTCAGCT+TGG + chr4_1:51365095-51365114 None:intergenic 45.0%
AGTCAATGCTTGATGAAGCG+CGG - chr4_1:51365169-51365188 Msa0554110:intron 45.0%
GTCTGAGAACGTGAAACTGA+AGG - chr4_1:51365476-51365495 Msa0554110:CDS 45.0%
AAAACGATGAACTCCGAGCT+AGG - chr4_1:51365544-51365563 Msa0554110:CDS 45.0%
AAACGATGAACTCCGAGCTA+GGG - chr4_1:51365545-51365564 Msa0554110:CDS 45.0%
GGAGGAGTTGTCAAAGTTAC+TGG - chr4_1:51365590-51365609 Msa0554110:intron 45.0%
TGATCTTTCGGACAGCGAAA+AGG - chr4_1:51365653-51365672 Msa0554110:intron 45.0%
GAGAATGGTCATGGATATGG+AGG - chr4_1:51365714-51365733 Msa0554110:intron 45.0%
TGGAGGAGAGGAAATTCCAA+AGG - chr4_1:51365731-51365750 Msa0554110:intron 45.0%
AGGGAAAGCTCAACAACCTT+TGG + chr4_1:51365750-51365769 None:intergenic 45.0%
TGTTGAGCTTTCCCTCAATC+AGG - chr4_1:51365755-51365774 Msa0554110:intron 45.0%
GAGTCAAAGACAGAAGAAGG+TGG - chr4_1:51366008-51366027 Msa0554110:intron 45.0%
AAGACAGAAGAAGGTGGTGA+TGG - chr4_1:51366014-51366033 Msa0554110:intron 45.0%
!! TGATAATGGTGGAAGCTCAC+CGG - chr4_1:51366082-51366101 Msa0554110:intron 45.0%
! GGAAGCTTGCTCAAGAAGAA+AGG - chr4_1:51366164-51366183 Msa0554110:CDS 45.0%
! AGCTTGCTCAAGAAGAAAGG+TGG - chr4_1:51366167-51366186 Msa0554110:exon 45.0%
!! AATTTGATATTTAAATATTA+GGG + chr4_1:51366500-51366519 None:intergenic 5.0%
!! AAATTTGATATTTAAATATT+AGG + chr4_1:51366501-51366520 None:intergenic 5.0%
!!! CTTACTTTTGGTGTTGCCGG+TGG + chr4_1:51362850-51362869 None:intergenic 50.0%
! TGGCGACTCAGATGCTGATT+TGG + chr4_1:51362893-51362912 None:intergenic 50.0%
CGACTCTTGATTGGGAAAGC+AGG - chr4_1:51363723-51363742 Msa0554110:CDS 50.0%
ACAAGCTCCAAGAGCTGCAA+AGG - chr4_1:51363871-51363890 Msa0554110:CDS 50.0%
CAAGCTCCAAGAGCTGCAAA+GGG - chr4_1:51363872-51363891 Msa0554110:CDS 50.0%
TCTGAACCCTTTGCAGCTCT+TGG + chr4_1:51363881-51363900 None:intergenic 50.0%
AGCAAAGGAGCAGATCCTTC+AGG - chr4_1:51363943-51363962 Msa0554110:CDS 50.0%
GGAAGCAAATGAGAAGCTCC+AGG - chr4_1:51364024-51364043 Msa0554110:CDS 50.0%
!! AGCATTGGTGGCTCAAAAGC+AGG - chr4_1:51364048-51364067 Msa0554110:CDS 50.0%
GGCTCAAAAGCAGGCTAAAG+AGG - chr4_1:51364057-51364076 Msa0554110:CDS 50.0%
CCGAGCTGTTGAATTGGAAC+AGG - chr4_1:51364099-51364118 Msa0554110:CDS 50.0%
GCTGTTGAATTGGAACAGGC+TGG - chr4_1:51364103-51364122 Msa0554110:CDS 50.0%
TGATGCAGCTAAAGTTGCCG+AGG - chr4_1:51364300-51364319 Msa0554110:CDS 50.0%
ACGCCGTCTTCTTATGGCTA+AGG - chr4_1:51364801-51364820 Msa0554110:intron 50.0%
GGCTCTTGAATCCGAACTTG+AGG - chr4_1:51364855-51364874 Msa0554110:intron 50.0%
TTGAGAACTCGAAGGCTGAG+TGG - chr4_1:51365241-51365260 Msa0554110:intron 50.0%
TGAGAACTCGAAGGCTGAGT+GGG - chr4_1:51365242-51365261 Msa0554110:intron 50.0%
CTGAGCTTCTTCCTCCCTAT+TGG + chr4_1:51365388-51365407 None:intergenic 50.0%
GGAGGAAGAAGCTCAGTTGA+AGG - chr4_1:51365392-51365411 Msa0554110:CDS 50.0%
TCTGAAGGAAGTTGAGACCG+AGG - chr4_1:51365419-51365438 Msa0554110:CDS 50.0%
!! CCTTTAGAGCTTCCTGCAGA+TGG + chr4_1:51365449-51365468 None:intergenic 50.0%
! CCATCTGCAGGAAGCTCTAA+AGG - chr4_1:51365446-51365465 Msa0554110:CDS 50.0%
TAGATTCGGCTTCCCTAGCT+CGG + chr4_1:51365560-51365579 None:intergenic 50.0%
TGGTCATGGATATGGAGGAG+AGG - chr4_1:51365719-51365738 Msa0554110:intron 50.0%
ACCAGAGAGAGAACTTCCAG+AGG - chr4_1:51365974-51365993 Msa0554110:intron 50.0%
GAGAGAACTTCCAGAGGCTA+AGG - chr4_1:51365980-51365999 Msa0554110:intron 50.0%
GACTCAGTTTCCTTAGCCTC+TGG + chr4_1:51365993-51366012 None:intergenic 50.0%
TGTTGCCGGTGGTGCTTTGT+TGG + chr4_1:51362839-51362858 None:intergenic 55.0%
! GCTGATTTCCGCTCAACAGC+TGG + chr4_1:51362976-51362995 None:intergenic 55.0%
ATGGCTTACATCAGGTGGGG+TGG + chr4_1:51363010-51363029 None:intergenic 55.0%
GCAGATCCTTCAGGCTGAGA+AGG - chr4_1:51363952-51363971 Msa0554110:CDS 55.0%
CCTTCTCCTTCTCAGCCTGA+AGG + chr4_1:51363961-51363980 None:intergenic 55.0%
CCTTCAGGCTGAGAAGGAGA+AGG - chr4_1:51363958-51363977 Msa0554110:CDS 55.0%
! AGAAGCACAAAGAGTGGCCG+AGG - chr4_1:51364003-51364022 Msa0554110:CDS 55.0%
TGAGAAGCTCCAGGCAGCAT+TGG - chr4_1:51364033-51364052 Msa0554110:CDS 55.0%
TTTGAGCCACCAATGCTGCC+TGG + chr4_1:51364045-51364064 None:intergenic 55.0%
TGTGAGGAACCAGCATGCCT+TGG - chr4_1:51364177-51364196 Msa0554110:CDS 55.0%
GAACCAGCATGCCTTGGATG+TGG - chr4_1:51364183-51364202 Msa0554110:CDS 55.0%
CTCAGTGGTTGAGGCAAGAG+TGG + chr4_1:51364209-51364228 None:intergenic 55.0%
CACTCTTGCCTCAACCACTG+AGG - chr4_1:51364207-51364226 Msa0554110:CDS 55.0%
CTCAAGCTCCTCAGTGGTTG+AGG + chr4_1:51364218-51364237 None:intergenic 55.0%
CAACCACTGAGGAGCTTGAG+CGG - chr4_1:51364218-51364237 Msa0554110:CDS 55.0%
AACCACTGAGGAGCTTGAGC+GGG - chr4_1:51364219-51364238 Msa0554110:CDS 55.0%
CCACTCCTCTAGCAGACTGT+TGG + chr4_1:51364569-51364588 None:intergenic 55.0%
CCAACAGTCTGCTAGAGGAG+TGG - chr4_1:51364566-51364585 Msa0554110:intron 55.0%
TGAAGAAGAGAATGCGGCCG+CGG - chr4_1:51365305-51365324 Msa0554110:intron 55.0%
TTCCTGCAGATGGATCGCCT+CGG + chr4_1:51365439-51365458 None:intergenic 55.0%
! GCCTCTGGAAGTTCTCTCTC+TGG + chr4_1:51365978-51365997 None:intergenic 55.0%
! GAAGCTCCAGGCAGCATTGG+TGG - chr4_1:51364036-51364055 Msa0554110:CDS 60.0%
TGGCCACATCCAAGGCATGC+TGG + chr4_1:51364189-51364208 None:intergenic 60.0%
GGCAAGAGTGGCCACATCCA+AGG + chr4_1:51364197-51364216 None:intergenic 60.0%
AACCCGCTCAAGCTCCTCAG+TGG + chr4_1:51364224-51364243 None:intergenic 60.0%
GACCGAGGCGATCCATCTGC+AGG - chr4_1:51365434-51365453 Msa0554110:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 51361863 51366523 51361863 ID=Msa0554110;Name=Msa0554110
chr4_1 mRNA 51361863 51366523 51361863 ID=Msa0554110-mRNA-1;Parent=Msa0554110;Name=Msa0554110-mRNA-1;_AED=0.00;_eAED=0.00;_QI=339|1|1|1|1|1|3|318|854
chr4_1 exon 51361863 51364517 51361863 ID=Msa0554110-mRNA-1:exon:14667;Parent=Msa0554110-mRNA-1
chr4_1 exon 51365366 51365570 51365366 ID=Msa0554110-mRNA-1:exon:14666;Parent=Msa0554110-mRNA-1
chr4_1 exon 51366162 51366523 51366162 ID=Msa0554110-mRNA-1:exon:14665;Parent=Msa0554110-mRNA-1
chr4_1 five_prime_UTR 51366185 51366523 51366185 ID=Msa0554110-mRNA-1:five_prime_utr;Parent=Msa0554110-mRNA-1
chr4_1 CDS 51366162 51366184 51366162 ID=Msa0554110-mRNA-1:cds;Parent=Msa0554110-mRNA-1
chr4_1 CDS 51365366 51365570 51365366 ID=Msa0554110-mRNA-1:cds;Parent=Msa0554110-mRNA-1
chr4_1 CDS 51362181 51364517 51362181 ID=Msa0554110-mRNA-1:cds;Parent=Msa0554110-mRNA-1
chr4_1 three_prime_UTR 51361863 51362180 51361863 ID=Msa0554110-mRNA-1:three_prime_utr;Parent=Msa0554110-mRNA-1
Gene Sequence

>Msa0554110

ATGGCTTCAAAATCTAGTACTAGATCGAAACCATCCGACAATTCCAACAAAGCACCACCGGCAACACCAAAAGTAAGTAAAGTTAGCAAACCAGTGACCAAATCAGCATCTGAGTCGCCATCTCCGTTGCAAAATTCACGTCTTTCTTTGGAAAAATCGCCACGATCTGTGAATTCAAAGCCAGCTGTTGAGCGGAAATCAGCAAAAGCTACTGCCACCCCACCTGATAAACAAGCTCCAAGAGCTGCAAAGGGTTCAGAGTTGCAGAATCAGTTGAATGTAGCTCAAGAAGATCTAAAGAAAGCAAAGGAGCAGATCCTTCAGGCTGAGAAGGAGAAGGTAAAAGCTATTGATGAGTTGAAAGAAGCACAAAGAGTGGCCGAGGAAGCAAATGAGAAGCTCCAGGCAGCATTGGTGGCTCAAAAGCAGGCTAAAGAGGAATCCGAGATTGAAAAATTCCGAGCTGTTGAATTGGAACAGGCTGGAATTGAAACTGTGAATAAGAAGGAAGAAGAATGGCAAAAAGAGCTTGAAAGTGTGAGGAACCAGCATGCCTTGGATGTGGCCACTCTTGCCTCAACCACTGAGGAGCTTGAGCGGGTTAAACAAGAACTCACCATGATGTGTGATGCTAAGAACCAGGCATTAAATCATGCTGATGATGCAGCTAAAGTTGCCGAGGTTCATGCTGAGAAAGTAGAAATTTATGCAGCTGAATTGACGCAGTTGAAGGCCTTGCTAGATTCAACACAAGAAACAAAAGCCAGTGATAATAACCTTATATTGAAGTTGAAAGCAGAGATAGAAGCTCTCAAGAAAGAACTCGACAAGGGAATGAGTTATGATGAGAGGTTGACAGAGAAAGAAACTAAGATTGAACAGCTTAATGTAGAACTTGAAACCTCAAGGACGGCTGAATCTTATGCCAACAGTCTGCTAGAGGAGTGGAAAAAGAAAGTTGAGGAACTAGAAATGAGGGTTGAAGAATCAAACAAGTTGGAGAGATCTGCATCAGAATCCTTGGAATCTGTAATGAAGCAGCTAGAAGAAAGCAATGATCTGTTGCATGACGCAGAATCTGTAGCTGCTACTCTTAAAGAGAAGGTGGGATTGTTAGAAATGACAATTGTGAGACAAAAAGCCGATCTTGAGGATTCAGAACGCCGTCTTCTTATGGCTAAGGAAGAAAATCTTGAAAAGTCAAAGAAGATTGAGGCTCTTGAATCCGAACTTGAGGCAGTTAAGGAAGAGAAAGATCAGGCTTTGAACAATGAGCAGCTTGCAGCCTCTCATGTGCAGACCCTATTAGAAGAGAAAAACAAACTCATCAATGAATTGGAGAATTCTAGGGAAGAAGAAGAAAAAAGCAAAAAGGCAATGGAAAGCTTAGCTTCTGCATTACATGAAGTATCTGCAGAATCTAGAGAAGCCAAAGAGAATTTTCTAAGCAACCAAGCTGAAAGGGAAAGCTATGAGAACCAGATTGAAGATTTGAAGTTAGTCTTAAAAGGTACTAATGAAAAATATGAGTCAATGCTTGATGAAGCGCGGCATGAAATTGATGTTCTCATATACAGTATTGAAAATTCTAAGAATGTGTTTGAGAACTCGAAGGCTGAGTGGGATCAGAGAGAGCTTGATCTAGTCAGCAGCCTAAAGAAAACTGAAGAAGAGAATGCGGCCGCGGAAAAAGAAATAAATAGATTGGTTTATTTGCTTAAACAAACTGAGGAAGAATCAAATGCCAATAGGGAGGAAGAAGCTCAGTTGAAGGAAAATCTGAAGGAAGTTGAGACCGAGGCGATCCATCTGCAGGAAGCTCTAAAGGAAGTAACGTCTGAGAACGTGAAACTGAAGGAGAATATATTGGACAAAGAGAATGAAATGCAGAATCTTTTTCAAGAAAACGATGAACTCCGAGCTAGGGAAGCCGAATCTATTAAGAAGGTGGAGGAGTTGTCAAAGTTACTGGATGAAGCTACAACCAGAAATCACACTGAGCATGAAAATGGTGATCTTTCGGACAGCGAAAAGGACTATGATTTGCTTCCTAAAGTCGTTGAATTTTCTGAAGAGAATGGTCATGGATATGGAGGAGAGGAAATTCCAAAGGTTGTTGAGCTTTCCCTCAATCAGGAAGAACTCAAACATAGCTTACTAGAAGAAAGTATGATCTTGAATGACAACACTGATGAGAAAATCGAATCTCCTAAACCTGTGAAAATGAATGGAAAACCAAAGGAAGATGAGAGCAAAGAAAAGGATGATCCAGAAGAAGTAGAATTCAAAATGTGGGAGAGTTGCACGATTGAGAAAAAGGAGTTCTCTTTCTCACCAGAGAGAGAACTTCCAGAGGCTAAGGAAACTGAGTCAAAGACAGAAGAAGGTGGTGATGGTGAGAGCTTTGATAAGATAAATGGAACCACTGTTATAGAGAACATTGATAATGGTGGAAGCTCACCGGTAAAAGAAGAACAACAACAACAGTTGAAGAAGAAGAAGAAAGCTTTGCTTGGAAAATTTGGAAGCTTGCTCAAGAAGAAAGGTGGTAGCAACCAGAAATAG
Protein sequence

>Msa0554110

MASKSSTRSKPSDNSNKAPPATPKVSKVSKPVTKSASESPSPLQNSRLSLEKSPRSVNSKPAVERKSAKATATPPDKQAPRAAKGSELQNQLNVAQEDLKKAKEQILQAEKEKVKAIDELKEAQRVAEEANEKLQAALVAQKQAKEESEIEKFRAVELEQAGIETVNKKEEEWQKELESVRNQHALDVATLASTTEELERVKQELTMMCDAKNQALNHADDAAKVAEVHAEKVEIYAAELTQLKALLDSTQETKASDNNLILKLKAEIEALKKELDKGMSYDERLTEKETKIEQLNVELETSRTAESYANSLLEEWKKKVEELEMRVEESNKLERSASESLESVMKQLEESNDLLHDAESVAATLKEKVGLLEMTIVRQKADLEDSERRLLMAKEENLEKSKKIEALESELEAVKEEKDQALNNEQLAASHVQTLLEEKNKLINELENSREEEEKSKKAMESLASALHEVSAESREAKENFLSNQAERESYENQIEDLKLVLKGTNEKYESMLDEARHEIDVLIYSIENSKNVFENSKAEWDQRELDLVSSLKKTEEENAAAEKEINRLVYLLKQTEEESNANREEEAQLKENLKEVETEAIHLQEALKEVTSENVKLKENILDKENEMQNLFQENDELRAREAESIKKVEELSKLLDEATTRNHTEHENGDLSDSEKDYDLLPKVVEFSEENGHGYGGEEIPKVVELSLNQEELKHSLLEESMILNDNTDEKIESPKPVKMNGKPKEDESKEKDDPEEVEFKMWESCTIEKKEFSFSPERELPEAKETESKTEEGGDGESFDKINGTTVIENIDNGGSSPVKEEQQQQLKKKKKALLGKFGSLLKKKGGSNQK*