Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554830 | XP_024638423.1 | 90.574 | 488 | 10 | 3 | 1 | 452 | 13 | 500 | 0.0 | 902 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554830 | sp|Q9FFH3|IDD8_ARATH | 54.466 | 459 | 159 | 12 | 20 | 452 | 32 | 466 | 1.08e-149 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554830 | A0A396IAJ3 | 90.574 | 488 | 10 | 3 | 1 | 452 | 13 | 500 | 0.0 | 902 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0554830 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0554830 | Msa0648920 | 0.809748 | 1.623570e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554830 | MtrunA17_Chr4g0040571 | 90.574 | 488 | 10 | 3 | 1 | 452 | 13 | 500 | 0.0 | 902 |
| Msa0554830 | MtrunA17_Chr1g0181381 | 54.400 | 375 | 110 | 9 | 19 | 360 | 32 | 378 | 1.77e-122 | 365 |
| Msa0554830 | MtrunA17_Chr7g0263941 | 48.636 | 440 | 139 | 12 | 1 | 437 | 17 | 372 | 1.50e-117 | 350 |
| Msa0554830 | MtrunA17_Chr4g0029521 | 45.376 | 465 | 169 | 13 | 20 | 438 | 33 | 458 | 6.33e-114 | 343 |
| Msa0554830 | MtrunA17_Chr1g0191991 | 57.270 | 337 | 101 | 8 | 22 | 358 | 60 | 353 | 2.66e-113 | 343 |
| Msa0554830 | MtrunA17_Chr8g0373541 | 73.709 | 213 | 46 | 2 | 1 | 203 | 4 | 216 | 4.84e-112 | 340 |
| Msa0554830 | MtrunA17_Chr2g0330171 | 77.957 | 186 | 41 | 0 | 3 | 188 | 24 | 209 | 2.64e-111 | 336 |
| Msa0554830 | MtrunA17_Chr8g0342421 | 80.108 | 186 | 33 | 1 | 7 | 188 | 40 | 225 | 3.22e-111 | 337 |
| Msa0554830 | MtrunA17_Chr1g0162971 | 54.023 | 348 | 119 | 11 | 25 | 354 | 41 | 365 | 2.74e-109 | 330 |
| Msa0554830 | MtrunA17_Chr1g0185121 | 82.022 | 178 | 31 | 1 | 14 | 190 | 29 | 206 | 1.65e-107 | 325 |
| Msa0554830 | MtrunA17_Chr7g0268961 | 53.216 | 342 | 110 | 9 | 35 | 365 | 32 | 334 | 2.85e-106 | 324 |
| Msa0554830 | MtrunA17_Chr1g0151351 | 78.142 | 183 | 39 | 1 | 16 | 197 | 32 | 214 | 5.29e-106 | 322 |
| Msa0554830 | MtrunA17_Chr1g0199101 | 85.185 | 162 | 24 | 0 | 25 | 186 | 47 | 208 | 1.12e-105 | 324 |
| Msa0554830 | MtrunA17_Chr1g0163001 | 86.503 | 163 | 22 | 0 | 25 | 187 | 43 | 205 | 1.76e-105 | 323 |
| Msa0554830 | MtrunA17_Chr1g0210821 | 48.241 | 398 | 145 | 9 | 28 | 375 | 47 | 433 | 3.97e-105 | 323 |
| Msa0554830 | MtrunA17_Chr2g0326381 | 69.192 | 198 | 51 | 2 | 24 | 220 | 31 | 219 | 1.71e-101 | 309 |
| Msa0554830 | MtrunA17_Chr3g0141431 | 75.758 | 165 | 39 | 1 | 18 | 181 | 15 | 179 | 5.81e-96 | 295 |
| Msa0554830 | MtrunA17_Chr2g0324991 | 92.366 | 131 | 10 | 0 | 36 | 166 | 3 | 133 | 3.00e-88 | 265 |
| Msa0554830 | MtrunA17_Chr6g0479921 | 64.103 | 156 | 55 | 1 | 25 | 179 | 29 | 184 | 3.49e-71 | 232 |
| Msa0554830 | MtrunA17_Chr8g0375521 | 46.097 | 269 | 125 | 7 | 25 | 274 | 27 | 294 | 9.13e-70 | 227 |
| Msa0554830 | MtrunA17_Chr2g0324981 | 51.613 | 248 | 87 | 16 | 203 | 438 | 5 | 231 | 4.22e-39 | 141 |
| Msa0554830 | MtrunA17_Chr2g0320341 | 35.484 | 155 | 86 | 4 | 34 | 174 | 224 | 378 | 8.30e-24 | 102 |
| Msa0554830 | MtrunA17_Chr3g0123941 | 35.028 | 177 | 97 | 5 | 11 | 177 | 100 | 268 | 1.05e-23 | 101 |
| Msa0554830 | MtrunA17_Chr1g0200421 | 33.333 | 168 | 96 | 4 | 39 | 190 | 236 | 403 | 7.03e-23 | 101 |
| Msa0554830 | MtrunA17_Chr5g0422571 | 31.472 | 197 | 123 | 5 | 8 | 194 | 69 | 263 | 9.27e-21 | 92.4 |
| Msa0554830 | MtrunA17_Chr8g0382121 | 35.135 | 148 | 85 | 5 | 38 | 174 | 109 | 256 | 1.71e-20 | 92.0 |
| Msa0554830 | MtrunA17_Chr4g0053341 | 31.892 | 185 | 112 | 6 | 2 | 177 | 39 | 218 | 1.20e-18 | 84.7 |
| Msa0554830 | MtrunA17_Chr7g0258011 | 30.814 | 172 | 101 | 5 | 41 | 195 | 176 | 346 | 3.58e-18 | 85.5 |
| Msa0554830 | MtrunA17_Chr1g0198651 | 34.211 | 152 | 87 | 5 | 46 | 185 | 107 | 257 | 5.94e-18 | 84.0 |
| Msa0554830 | MtrunA17_Chr8g0352011 | 33.333 | 171 | 93 | 6 | 41 | 194 | 166 | 332 | 1.17e-17 | 84.0 |
| Msa0554830 | MtrunA17_Chr1g0173841 | 30.286 | 175 | 104 | 5 | 41 | 198 | 215 | 388 | 5.96e-17 | 82.4 |
| Msa0554830 | MtrunA17_Chr2g0321291 | 33.562 | 146 | 87 | 4 | 41 | 177 | 133 | 277 | 2.11e-16 | 79.7 |
| Msa0554830 | MtrunA17_Chr2g0328921 | 32.192 | 146 | 89 | 4 | 41 | 177 | 138 | 282 | 2.65e-16 | 79.7 |
| Msa0554830 | MtrunA17_Chr4g0026521 | 32.192 | 146 | 89 | 4 | 41 | 177 | 118 | 262 | 4.63e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554830 | AT5G44160.1 | 54.466 | 459 | 159 | 12 | 20 | 452 | 32 | 466 | 1.10e-150 | 437 |
| Msa0554830 | AT1G03840.1 | 53.388 | 487 | 161 | 13 | 18 | 452 | 34 | 506 | 3.29e-150 | 437 |
| Msa0554830 | AT1G03840.2 | 52.977 | 487 | 161 | 14 | 18 | 452 | 34 | 504 | 2.79e-146 | 427 |
| Msa0554830 | AT5G44160.2 | 53.604 | 444 | 156 | 12 | 35 | 452 | 8 | 427 | 7.44e-140 | 408 |
| Msa0554830 | AT5G66730.1 | 87.730 | 163 | 20 | 0 | 25 | 187 | 32 | 194 | 9.66e-110 | 333 |
| Msa0554830 | AT2G02080.1 | 46.875 | 448 | 185 | 14 | 22 | 438 | 51 | 476 | 1.35e-108 | 331 |
| Msa0554830 | AT2G02080.4 | 46.875 | 448 | 185 | 14 | 22 | 438 | 51 | 476 | 1.35e-108 | 331 |
| Msa0554830 | AT2G02080.5 | 46.875 | 448 | 185 | 14 | 22 | 438 | 51 | 476 | 1.35e-108 | 331 |
| Msa0554830 | AT2G02080.3 | 46.875 | 448 | 185 | 14 | 22 | 438 | 51 | 476 | 1.35e-108 | 331 |
| Msa0554830 | AT1G55110.3 | 86.826 | 167 | 21 | 1 | 23 | 188 | 61 | 227 | 2.03e-107 | 326 |
| Msa0554830 | AT1G55110.1 | 86.826 | 167 | 21 | 1 | 23 | 188 | 61 | 227 | 2.03e-107 | 326 |
| Msa0554830 | AT1G55110.2 | 86.826 | 167 | 21 | 1 | 23 | 188 | 61 | 227 | 2.03e-107 | 326 |
| Msa0554830 | AT5G03150.1 | 71.429 | 217 | 48 | 5 | 25 | 237 | 53 | 259 | 9.55e-107 | 326 |
| Msa0554830 | AT3G13810.6 | 88.415 | 164 | 18 | 1 | 25 | 187 | 51 | 214 | 1.10e-106 | 325 |
| Msa0554830 | AT3G13810.5 | 88.415 | 164 | 18 | 1 | 25 | 187 | 65 | 228 | 1.27e-106 | 325 |
| Msa0554830 | AT3G13810.4 | 88.415 | 164 | 18 | 1 | 25 | 187 | 70 | 233 | 1.32e-106 | 326 |
| Msa0554830 | AT3G13810.1 | 88.415 | 164 | 18 | 1 | 25 | 187 | 70 | 233 | 1.32e-106 | 326 |
| Msa0554830 | AT1G14580.1 | 80.571 | 175 | 32 | 1 | 13 | 187 | 43 | 215 | 3.15e-106 | 323 |
| Msa0554830 | AT1G14580.2 | 80.571 | 175 | 32 | 1 | 13 | 187 | 43 | 215 | 3.15e-106 | 323 |
| Msa0554830 | AT1G14580.3 | 80.571 | 175 | 32 | 1 | 13 | 187 | 57 | 229 | 6.99e-106 | 323 |
| Msa0554830 | AT4G02670.2 | 81.395 | 172 | 31 | 1 | 25 | 195 | 55 | 226 | 4.88e-104 | 315 |
| Msa0554830 | AT4G02670.1 | 81.395 | 172 | 31 | 1 | 25 | 195 | 53 | 224 | 5.33e-104 | 315 |
| Msa0554830 | AT5G60470.3 | 46.649 | 373 | 154 | 10 | 2 | 351 | 18 | 368 | 1.21e-102 | 313 |
| Msa0554830 | AT5G60470.2 | 46.649 | 373 | 154 | 10 | 2 | 351 | 22 | 372 | 1.24e-102 | 314 |
| Msa0554830 | AT2G02070.2 | 83.436 | 163 | 27 | 0 | 25 | 187 | 52 | 214 | 3.43e-102 | 317 |
| Msa0554830 | AT2G02070.1 | 83.436 | 163 | 27 | 0 | 25 | 187 | 52 | 214 | 3.43e-102 | 317 |
| Msa0554830 | AT3G13810.3 | 89.542 | 153 | 15 | 1 | 36 | 187 | 68 | 220 | 3.00e-99 | 306 |
| Msa0554830 | AT3G13810.2 | 89.542 | 153 | 15 | 1 | 36 | 187 | 82 | 234 | 4.93e-99 | 306 |
| Msa0554830 | AT5G60470.1 | 46.450 | 338 | 139 | 8 | 36 | 351 | 46 | 363 | 9.85e-94 | 290 |
| Msa0554830 | AT2G02080.6 | 45.542 | 415 | 185 | 12 | 49 | 438 | 1 | 399 | 1.11e-92 | 287 |
| Msa0554830 | AT2G02080.2 | 45.542 | 415 | 185 | 12 | 49 | 438 | 1 | 399 | 1.11e-92 | 287 |
| Msa0554830 | AT1G68130.1 | 65.385 | 156 | 52 | 2 | 25 | 178 | 41 | 196 | 2.25e-71 | 232 |
| Msa0554830 | AT2G01940.1 | 65.190 | 158 | 53 | 2 | 25 | 180 | 44 | 201 | 3.03e-71 | 232 |
| Msa0554830 | AT1G25250.3 | 64.331 | 157 | 53 | 2 | 25 | 178 | 33 | 189 | 9.78e-71 | 229 |
| Msa0554830 | AT2G01940.3 | 64.151 | 159 | 54 | 3 | 25 | 180 | 44 | 202 | 1.91e-67 | 222 |
| Msa0554830 | AT1G25250.1 | 64.626 | 147 | 49 | 2 | 35 | 178 | 20 | 166 | 1.85e-66 | 217 |
| Msa0554830 | AT2G01940.2 | 66.071 | 112 | 36 | 2 | 71 | 180 | 1 | 112 | 1.61e-45 | 162 |
| Msa0554830 | AT1G68130.2 | 65.455 | 110 | 36 | 2 | 71 | 178 | 1 | 110 | 2.74e-45 | 160 |
| Msa0554830 | AT1G25250.2 | 64.865 | 111 | 36 | 2 | 71 | 178 | 1 | 111 | 6.23e-45 | 159 |
| Msa0554830 | AT1G34370.3 | 30.542 | 203 | 114 | 5 | 34 | 209 | 14 | 216 | 4.17e-23 | 99.4 |
| Msa0554830 | AT1G34370.2 | 30.542 | 203 | 114 | 5 | 34 | 209 | 224 | 426 | 7.97e-23 | 101 |
| Msa0554830 | AT1G34370.1 | 30.542 | 203 | 114 | 5 | 34 | 209 | 224 | 426 | 7.97e-23 | 101 |
| Msa0554830 | AT5G22890.1 | 32.680 | 153 | 89 | 3 | 39 | 177 | 202 | 354 | 1.64e-22 | 99.0 |
| Msa0554830 | AT1G34790.1 | 33.526 | 173 | 98 | 5 | 37 | 193 | 128 | 299 | 3.67e-18 | 85.1 |
| Msa0554830 | AT1G13290.1 | 31.892 | 185 | 106 | 7 | 13 | 186 | 68 | 243 | 3.87e-18 | 85.1 |
| Msa0554830 | AT3G20880.1 | 32.877 | 146 | 88 | 4 | 41 | 177 | 243 | 387 | 3.03e-17 | 84.0 |
| Msa0554830 | AT3G57670.1 | 29.480 | 173 | 104 | 5 | 41 | 196 | 204 | 375 | 5.37e-17 | 82.8 |
| Msa0554830 | AT1G51220.1 | 31.507 | 146 | 90 | 4 | 41 | 177 | 165 | 309 | 2.38e-16 | 80.5 |
| Msa0554830 | AT1G08290.1 | 35.556 | 135 | 76 | 4 | 53 | 177 | 179 | 312 | 4.07e-16 | 79.7 |
Find 86 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAATAACTATCAGCTAAAT+TGG | 0.096349 | 4_1:-52537598 | Msa0554830:CDS |
| GTTTGAAAATTGAAGGAAAA+TGG | 0.140606 | 4_1:+52537834 | None:intergenic |
| TGGGTTGGCATATTGTTATT+AGG | 0.224791 | 4_1:+52537854 | None:intergenic |
| TAAACAACAGCTCATTATTA+AGG | 0.225341 | 4_1:-52537925 | Msa0554830:CDS |
| ACTTCATTCCTTGGAAGTTT+AGG | 0.253137 | 4_1:-52537335 | Msa0554830:CDS |
| AGGGCACTTGGTGACTTAAC+TGG | 0.259047 | 4_1:-52538954 | Msa0554830:CDS |
| AGCTGATAGTTATTAGAATA+TGG | 0.265620 | 4_1:+52537605 | None:intergenic |
| ATTAACATGCCTGGATTTCC+TGG | 0.267793 | 4_1:+52539308 | None:intergenic |
| TGGTAATTACACCAACATAA+TGG | 0.296549 | 4_1:-52537894 | Msa0554830:CDS |
| AAGATGTTTGATGTGGTATT+TGG | 0.298081 | 4_1:+52537423 | None:intergenic |
| GGGTTGGCATATTGTTATTA+GGG | 0.301259 | 4_1:+52537855 | None:intergenic |
| TTTGTAGCCATGAGTGTCTT+TGG | 0.327707 | 4_1:+52539146 | None:intergenic |
| TGCACATGTCTACGTTTAGA+AGG | 0.343591 | 4_1:+52537170 | None:intergenic |
| TGATGATCAGGAGTTGAAAT+TGG | 0.355744 | 4_1:+52537812 | None:intergenic |
| GGTAATTACACCAACATAAT+GGG | 0.361813 | 4_1:-52537893 | Msa0554830:CDS |
| AAAGCTATAACTTCTGCTTC+AGG | 0.388526 | 4_1:+52539173 | None:intergenic |
| GGATAGTCCTCTAGTTTGAT+TGG | 0.388786 | 4_1:+52537772 | None:intergenic |
| TCAAGTGATACTTCATTCCT+TGG | 0.409861 | 4_1:-52537344 | Msa0554830:CDS |
| TATACAAGGAAGAAATTTGT+TGG | 0.410040 | 4_1:+52537456 | None:intergenic |
| TAATAACTATCAGCTAAATT+GGG | 0.410339 | 4_1:-52537597 | Msa0554830:intron |
| GAAATTGGTTTGAAAATTGA+AGG | 0.411531 | 4_1:+52537827 | None:intergenic |
| AAACAACAGCTCATTATTAA+GGG | 0.419725 | 4_1:-52537924 | Msa0554830:CDS |
| CCTTGCTGTTTCTTCTGCTA+AGG | 0.425077 | 4_1:+52537967 | None:intergenic |
| ATGGAGGAGGAGGGCAAACT+AGG | 0.425755 | 4_1:-52537136 | Msa0554830:CDS |
| TTTGAAAATTGAAGGAAAAT+GGG | 0.430601 | 4_1:+52537835 | None:intergenic |
| ACTAATGATGTGAACAAGTT+TGG | 0.430713 | 4_1:-52537287 | Msa0554830:CDS |
| GTGTCCACCATGATCCTTCA+AGG | 0.447211 | 4_1:-52538974 | Msa0554830:CDS |
| AAACTAGAGGACTATCCCTT+TGG | 0.451953 | 4_1:-52537766 | Msa0554830:CDS |
| GTTATGCTGTTCAGTCAGAT+TGG | 0.460465 | 4_1:-52538866 | Msa0554830:CDS |
| TTCTGCTAAGGCATCACAAA+AGG | 0.465130 | 4_1:+52537979 | None:intergenic |
| GATCTCTGCTTAAGCTTCCA+TGG | 0.466510 | 4_1:+52539044 | None:intergenic |
| TTTGGTTGTACTGGTATGTA+TGG | 0.468111 | 4_1:-52537269 | Msa0554830:CDS |
| TAGAAGCACTAGTTGTTTGA+GGG | 0.469138 | 4_1:+52539366 | None:intergenic |
| TTAGAAGCACTAGTTGTTTG+AGG | 0.474454 | 4_1:+52539365 | None:intergenic |
| AAAATTGAAGGAAAATGGGT+TGG | 0.476598 | 4_1:+52537839 | None:intergenic |
| ATCCAACCGTTGATTGATGA+AGG | 0.480114 | 4_1:+52537077 | None:intergenic |
| AAGTCACCAAGTGCCCTTGA+AGG | 0.485801 | 4_1:+52538960 | None:intergenic |
| GTGAACAAGTTTGGTTGTAC+TGG | 0.486567 | 4_1:-52537278 | Msa0554830:CDS |
| AGTGAAGAGAATGGAGGAGG+AGG | 0.498727 | 4_1:-52537146 | Msa0554830:CDS |
| AGTTCATTACTCATTAGTCT+TGG | 0.500073 | 4_1:-52537239 | Msa0554830:CDS |
| AGAAACCTTCCAGGAAATCC+AGG | 0.500421 | 4_1:-52539317 | Msa0554830:intron |
| CAAACTAGAATTTCCATTGG+TGG | 0.513839 | 4_1:+52537697 | None:intergenic |
| CAAAGTGAAGAGAATGGAGG+AGG | 0.514380 | 4_1:-52537149 | Msa0554830:CDS |
| CATGATCCTTCAAGGGCACT+TGG | 0.515364 | 4_1:-52538966 | Msa0554830:CDS |
| ACATGCCTGGATTTCCTGGA+AGG | 0.520018 | 4_1:+52539312 | None:intergenic |
| ACCCTTCATCAATCAACGGT+TGG | 0.521243 | 4_1:-52537079 | Msa0554830:CDS |
| ACTAGAATTTCCATTGGTGG+TGG | 0.523314 | 4_1:+52537700 | None:intergenic |
| GGGCACTTGGTGACTTAACT+GGG | 0.533578 | 4_1:-52538953 | Msa0554830:CDS |
| GAAAGCATGGTGAAAAGAAG+TGG | 0.534661 | 4_1:-52538911 | Msa0554830:CDS |
| TCATCAAGAGAAATTATGTA+TGG | 0.535107 | 4_1:-52537647 | Msa0554830:CDS |
| AGATGTTGTTCCCATTATGT+TGG | 0.540728 | 4_1:+52537883 | None:intergenic |
| CAAGTGCCCTTGAAGGATCA+TGG | 0.541455 | 4_1:+52538967 | None:intergenic |
| TGGAGGAGGAGGGCAAACTA+GGG | 0.541684 | 4_1:-52537135 | Msa0554830:CDS |
| GATTGATGAAGGGTGACAAA+TGG | 0.546230 | 4_1:+52537088 | None:intergenic |
| ACAATGATAACCACCACCAA+TGG | 0.547801 | 4_1:-52537710 | Msa0554830:CDS |
| TAGTTATTAGAATATGGTGG+AGG | 0.547810 | 4_1:+52537611 | None:intergenic |
| GTGGTTATCATTGTTTCATG+AGG | 0.548154 | 4_1:+52537719 | None:intergenic |
| ACTCATTAGTCTTGGCAATG+AGG | 0.548463 | 4_1:-52537231 | Msa0554830:CDS |
| ATGCAAACTAGAATTTCCAT+TGG | 0.550334 | 4_1:+52537694 | None:intergenic |
| ATTTCAAACCTAAACTTCCA+AGG | 0.550495 | 4_1:+52537327 | None:intergenic |
| TCAAGAGAAATTATGTATGG+TGG | 0.557028 | 4_1:-52537644 | Msa0554830:CDS |
| TTGTGTGAAACATGTGGGAA+AGG | 0.560203 | 4_1:-52539116 | Msa0554830:CDS |
| GCACATGTCTACGTTTAGAA+GGG | 0.563505 | 4_1:+52537171 | None:intergenic |
| TTGGTGTTGTGAGCTATACA+AGG | 0.564753 | 4_1:+52537442 | None:intergenic |
| GACGTGGACATAATCTTCCA+TGG | 0.576178 | 4_1:-52539061 | Msa0554830:CDS |
| GTGAAGAGAATGGAGGAGGA+GGG | 0.586229 | 4_1:-52537145 | Msa0554830:CDS |
| TCATTATTAAGGGGTAACAT+TGG | 0.591412 | 4_1:-52537914 | Msa0554830:CDS |
| TGTCACCCTTCATCAATCAA+CGG | 0.597702 | 4_1:-52537083 | Msa0554830:CDS |
| AGTTATTAGAATATGGTGGA+GGG | 0.602415 | 4_1:+52537612 | None:intergenic |
| AAGGAATGAAGTATCACTTG+AGG | 0.616790 | 4_1:+52537346 | None:intergenic |
| TTTATCACCAAAGACACTCA+TGG | 0.620813 | 4_1:-52539153 | Msa0554830:CDS |
| AACAACAGCTCATTATTAAG+GGG | 0.621367 | 4_1:-52537923 | Msa0554830:CDS |
| TCCAACCGTTGATTGATGAA+GGG | 0.630023 | 4_1:+52537078 | None:intergenic |
| TGTCCACCATGATCCTTCAA+GGG | 0.631692 | 4_1:-52538973 | Msa0554830:CDS |
| GAATCAACCAATCAAACTAG+AGG | 0.641739 | 4_1:-52537779 | Msa0554830:CDS |
| CATGTGCAAAGTGAAGAGAA+TGG | 0.643141 | 4_1:-52537155 | Msa0554830:CDS |
| TGATAGTTATTAGAATATGG+TGG | 0.647387 | 4_1:+52537608 | None:intergenic |
| CCTTAGCAGAAGAAACAGCA+AGG | 0.647661 | 4_1:-52537967 | Msa0554830:CDS |
| TTTGCTGAAGATGTTTGATG+TGG | 0.648760 | 4_1:+52537416 | None:intergenic |
| GATTCTTGTGTGAAACATGT+GGG | 0.660378 | 4_1:-52539121 | Msa0554830:CDS |
| AGATTCTTGTGTGAAACATG+TGG | 0.668573 | 4_1:-52539122 | Msa0554830:CDS |
| AGAGAATACAAATGTGACTG+TGG | 0.675625 | 4_1:-52538816 | Msa0554830:CDS |
| CTTAGCAGAAGAAACAGCAA+GGG | 0.690135 | 4_1:-52537966 | Msa0554830:CDS |
| AATCTACAGCTACATAGACG+TGG | 0.700320 | 4_1:-52539077 | Msa0554830:CDS |
| GTGCAAAGTGAAGAGAATGG+AGG | 0.706115 | 4_1:-52537152 | Msa0554830:CDS |
| GTGCCCTTGAAGGATCATGG+TGG | 0.739339 | 4_1:+52538970 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAGATATATATTTTTTTTT+TGG | + | chr4_1:52537832-52537851 | None:intergenic | 10.0% |
| !! | AAAAATATATATCTGATATA+AGG | - | chr4_1:52537836-52537855 | Msa0554830:CDS | 10.0% |
| !! | GTTTATATATAAATATTAGA+AGG | + | chr4_1:52538380-52538399 | None:intergenic | 10.0% |
| !!! | TTAATATTTGTGAATATTTT+TGG | - | chr4_1:52538435-52538454 | Msa0554830:intron | 10.0% |
| !!! | TCAGATATATATTTTTTTTT+TGG | + | chr4_1:52537832-52537851 | None:intergenic | 10.0% |
| !! | AAAAATATATATCTGATATA+AGG | - | chr4_1:52537836-52537855 | Msa0554830:CDS | 10.0% |
| !! | GTTTATATATAAATATTAGA+AGG | + | chr4_1:52538380-52538399 | None:intergenic | 10.0% |
| !!! | TTAATATTTGTGAATATTTT+TGG | - | chr4_1:52538435-52538454 | Msa0554830:intron | 10.0% |
| !! | TATTGATATATTCAATCATA+AGG | + | chr4_1:52537204-52537223 | None:intergenic | 15.0% |
| !! | TTATGATTGAATATATCAAT+AGG | - | chr4_1:52537203-52537222 | Msa0554830:CDS | 15.0% |
| !! | AAACATTAATGTTAATGTTA+AGG | - | chr4_1:52538970-52538989 | Msa0554830:CDS | 15.0% |
| !! | TATTGATATATTCAATCATA+AGG | + | chr4_1:52537204-52537223 | None:intergenic | 15.0% |
| !! | TTATGATTGAATATATCAAT+AGG | - | chr4_1:52537203-52537222 | Msa0554830:CDS | 15.0% |
| !! | AAACATTAATGTTAATGTTA+AGG | - | chr4_1:52538970-52538989 | Msa0554830:CDS | 15.0% |
| !! | ATATCAATAGGTATATTCAA+AGG | - | chr4_1:52537215-52537234 | Msa0554830:CDS | 20.0% |
| !!! | ATGTTTTTTTTTTGCCTATT+TGG | - | chr4_1:52537894-52537913 | Msa0554830:CDS | 20.0% |
| !! | TTAGTTTAAACAAATGACTA+AGG | - | chr4_1:52537949-52537968 | Msa0554830:CDS | 20.0% |
| !! | TTTGAAAATTGAAGGAAAAT+GGG | + | chr4_1:52538639-52538658 | None:intergenic | 20.0% |
| !! | TAATAACTATCAGCTAAATT+GGG | - | chr4_1:52538874-52538893 | Msa0554830:CDS | 20.0% |
| !! | TAGTACTAGTAATTAATTCT+TGG | + | chr4_1:52538931-52538950 | None:intergenic | 20.0% |
| !! | ATATCAATAGGTATATTCAA+AGG | - | chr4_1:52537215-52537234 | Msa0554830:CDS | 20.0% |
| !!! | ATGTTTTTTTTTTGCCTATT+TGG | - | chr4_1:52537894-52537913 | Msa0554830:CDS | 20.0% |
| !! | TTAGTTTAAACAAATGACTA+AGG | - | chr4_1:52537949-52537968 | Msa0554830:CDS | 20.0% |
| !! | TTTGAAAATTGAAGGAAAAT+GGG | + | chr4_1:52538639-52538658 | None:intergenic | 20.0% |
| !! | TAATAACTATCAGCTAAATT+GGG | - | chr4_1:52538874-52538893 | Msa0554830:CDS | 20.0% |
| !! | TAGTACTAGTAATTAATTCT+TGG | + | chr4_1:52538931-52538950 | None:intergenic | 20.0% |
| ! | TAATCGGTATATCTGATATA+AGG | - | chr4_1:52537749-52537768 | Msa0554830:CDS | 25.0% |
| ! | ATAAGGATCAAGTTTAAAAG+TGG | - | chr4_1:52537853-52537872 | Msa0554830:CDS | 25.0% |
| ! | TATTCTCAAAAAAGCCAAAT+AGG | + | chr4_1:52537911-52537930 | None:intergenic | 25.0% |
| ! | TTGAGAATAAAAAGTGAATG+AGG | - | chr4_1:52537922-52537941 | Msa0554830:CDS | 25.0% |
| ! | AATTATATACATAGTGAGTG+AGG | + | chr4_1:52538075-52538094 | None:intergenic | 25.0% |
| !!! | TTTATTTTCACACTAGTTTG+AGG | - | chr4_1:52538110-52538129 | Msa0554830:intron | 25.0% |
| ! | GTTAACCAACTACTATATAT+AGG | - | chr4_1:52538135-52538154 | Msa0554830:intron | 25.0% |
| !! | AACTCATTAACCAAATCTTT+TGG | - | chr4_1:52538349-52538368 | Msa0554830:intron | 25.0% |
| ! | TAAACAACAGCTCATTATTA+AGG | - | chr4_1:52538546-52538565 | Msa0554830:intron | 25.0% |
| ! | AAACAACAGCTCATTATTAA+GGG | - | chr4_1:52538547-52538566 | Msa0554830:intron | 25.0% |
| ! | GTTTGAAAATTGAAGGAAAA+TGG | + | chr4_1:52538640-52538659 | None:intergenic | 25.0% |
| !!! | GAAATTGGTTTGAAAATTGA+AGG | + | chr4_1:52538647-52538666 | None:intergenic | 25.0% |
| !!! | AGAATTTTGATTCATCCAAA+GGG | + | chr4_1:52538723-52538742 | None:intergenic | 25.0% |
| ! | TCATCAAGAGAAATTATGTA+TGG | - | chr4_1:52538824-52538843 | Msa0554830:CDS | 25.0% |
| ! | TGATAGTTATTAGAATATGG+TGG | + | chr4_1:52538866-52538885 | None:intergenic | 25.0% |
| ! | AGCTGATAGTTATTAGAATA+TGG | + | chr4_1:52538869-52538888 | None:intergenic | 25.0% |
| ! | CTAATAACTATCAGCTAAAT+TGG | - | chr4_1:52538873-52538892 | Msa0554830:CDS | 25.0% |
| ! | TTAACATTAATGTTTCCTAG+TGG | + | chr4_1:52538965-52538984 | None:intergenic | 25.0% |
| ! | TATACAAGGAAGAAATTTGT+TGG | + | chr4_1:52539018-52539037 | None:intergenic | 25.0% |
| ! | TAATCGGTATATCTGATATA+AGG | - | chr4_1:52537749-52537768 | Msa0554830:CDS | 25.0% |
| ! | ATAAGGATCAAGTTTAAAAG+TGG | - | chr4_1:52537853-52537872 | Msa0554830:CDS | 25.0% |
| ! | TATTCTCAAAAAAGCCAAAT+AGG | + | chr4_1:52537911-52537930 | None:intergenic | 25.0% |
| ! | TTGAGAATAAAAAGTGAATG+AGG | - | chr4_1:52537922-52537941 | Msa0554830:CDS | 25.0% |
| ! | AATTATATACATAGTGAGTG+AGG | + | chr4_1:52538075-52538094 | None:intergenic | 25.0% |
| !!! | TTTATTTTCACACTAGTTTG+AGG | - | chr4_1:52538110-52538129 | Msa0554830:intron | 25.0% |
| ! | GTTAACCAACTACTATATAT+AGG | - | chr4_1:52538135-52538154 | Msa0554830:intron | 25.0% |
| !! | AACTCATTAACCAAATCTTT+TGG | - | chr4_1:52538349-52538368 | Msa0554830:intron | 25.0% |
| ! | TAAACAACAGCTCATTATTA+AGG | - | chr4_1:52538546-52538565 | Msa0554830:intron | 25.0% |
| ! | AAACAACAGCTCATTATTAA+GGG | - | chr4_1:52538547-52538566 | Msa0554830:intron | 25.0% |
| ! | GTTTGAAAATTGAAGGAAAA+TGG | + | chr4_1:52538640-52538659 | None:intergenic | 25.0% |
| !!! | GAAATTGGTTTGAAAATTGA+AGG | + | chr4_1:52538647-52538666 | None:intergenic | 25.0% |
| !!! | AGAATTTTGATTCATCCAAA+GGG | + | chr4_1:52538723-52538742 | None:intergenic | 25.0% |
| ! | TCATCAAGAGAAATTATGTA+TGG | - | chr4_1:52538824-52538843 | Msa0554830:CDS | 25.0% |
| ! | TGATAGTTATTAGAATATGG+TGG | + | chr4_1:52538866-52538885 | None:intergenic | 25.0% |
| ! | AGCTGATAGTTATTAGAATA+TGG | + | chr4_1:52538869-52538888 | None:intergenic | 25.0% |
| ! | CTAATAACTATCAGCTAAAT+TGG | - | chr4_1:52538873-52538892 | Msa0554830:CDS | 25.0% |
| ! | TTAACATTAATGTTTCCTAG+TGG | + | chr4_1:52538965-52538984 | None:intergenic | 25.0% |
| ! | TATACAAGGAAGAAATTTGT+TGG | + | chr4_1:52539018-52539037 | None:intergenic | 25.0% |
| ! | TTTCTTTTTCTCTTCAAAGC+AGG | + | chr4_1:52537139-52537158 | None:intergenic | 30.0% |
| AAAGAGAAAATTAACATGCC+TGG | + | chr4_1:52537175-52537194 | None:intergenic | 30.0% | |
| TGATCAGAATAACATAGAGA+TGG | + | chr4_1:52537721-52537740 | None:intergenic | 30.0% | |
| GATCAAGTTTAAAAGTGGTT+AGG | - | chr4_1:52537858-52537877 | Msa0554830:CDS | 30.0% | |
| ACAAGCCTATATATAGTAGT+TGG | + | chr4_1:52538143-52538162 | None:intergenic | 30.0% | |
| AGCTAGACAAAAGTCAAAAT+GGG | + | chr4_1:52538206-52538225 | None:intergenic | 30.0% | |
| TAATGAGTTTCAGTTAAGGA+CGG | + | chr4_1:52538338-52538357 | None:intergenic | 30.0% | |
| TGGTTAATGAGTTTCAGTTA+AGG | + | chr4_1:52538342-52538361 | None:intergenic | 30.0% | |
| AACAACAGCTCATTATTAAG+GGG | - | chr4_1:52538548-52538567 | Msa0554830:intron | 30.0% | |
| TCATTATTAAGGGGTAACAT+TGG | - | chr4_1:52538557-52538576 | Msa0554830:intron | 30.0% | |
| TGGTAATTACACCAACATAA+TGG | - | chr4_1:52538577-52538596 | Msa0554830:intron | 30.0% | |
| GGTAATTACACCAACATAAT+GGG | - | chr4_1:52538578-52538597 | Msa0554830:intron | 30.0% | |
| AAAATTGAAGGAAAATGGGT+TGG | + | chr4_1:52538635-52538654 | None:intergenic | 30.0% | |
| !!! | GAGAATTTTGATTCATCCAA+AGG | + | chr4_1:52538724-52538743 | None:intergenic | 30.0% |
| ATGCAAACTAGAATTTCCAT+TGG | + | chr4_1:52538780-52538799 | None:intergenic | 30.0% | |
| TCAAGAGAAATTATGTATGG+TGG | - | chr4_1:52538827-52538846 | Msa0554830:CDS | 30.0% | |
| ! | AGTTATTAGAATATGGTGGA+GGG | + | chr4_1:52538862-52538881 | None:intergenic | 30.0% |
| TAGTTATTAGAATATGGTGG+AGG | + | chr4_1:52538863-52538882 | None:intergenic | 30.0% | |
| ! | TATCAGCTAAATTGGGTTTT+TGG | - | chr4_1:52538881-52538900 | Msa0554830:CDS | 30.0% |
| AAGATGTTTGATGTGGTATT+TGG | + | chr4_1:52539051-52539070 | None:intergenic | 30.0% | |
| TTACAAAAAGCTGCTCAAAT+TGG | - | chr4_1:52539097-52539116 | Msa0554830:CDS | 30.0% | |
| ATTTCAAACCTAAACTTCCA+AGG | + | chr4_1:52539147-52539166 | None:intergenic | 30.0% | |
| ACTAATGATGTGAACAAGTT+TGG | - | chr4_1:52539184-52539203 | Msa0554830:intron | 30.0% | |
| ! | AGTTCATTACTCATTAGTCT+TGG | - | chr4_1:52539232-52539251 | Msa0554830:intron | 30.0% |
| ! | TTTCTTTTTCTCTTCAAAGC+AGG | + | chr4_1:52537139-52537158 | None:intergenic | 30.0% |
| AAAGAGAAAATTAACATGCC+TGG | + | chr4_1:52537175-52537194 | None:intergenic | 30.0% | |
| TGATCAGAATAACATAGAGA+TGG | + | chr4_1:52537721-52537740 | None:intergenic | 30.0% | |
| GATCAAGTTTAAAAGTGGTT+AGG | - | chr4_1:52537858-52537877 | Msa0554830:CDS | 30.0% | |
| ACAAGCCTATATATAGTAGT+TGG | + | chr4_1:52538143-52538162 | None:intergenic | 30.0% | |
| AGCTAGACAAAAGTCAAAAT+GGG | + | chr4_1:52538206-52538225 | None:intergenic | 30.0% | |
| TAATGAGTTTCAGTTAAGGA+CGG | + | chr4_1:52538338-52538357 | None:intergenic | 30.0% | |
| TGGTTAATGAGTTTCAGTTA+AGG | + | chr4_1:52538342-52538361 | None:intergenic | 30.0% | |
| AACAACAGCTCATTATTAAG+GGG | - | chr4_1:52538548-52538567 | Msa0554830:intron | 30.0% | |
| TCATTATTAAGGGGTAACAT+TGG | - | chr4_1:52538557-52538576 | Msa0554830:intron | 30.0% | |
| TGGTAATTACACCAACATAA+TGG | - | chr4_1:52538577-52538596 | Msa0554830:intron | 30.0% | |
| GGTAATTACACCAACATAAT+GGG | - | chr4_1:52538578-52538597 | Msa0554830:intron | 30.0% | |
| AAAATTGAAGGAAAATGGGT+TGG | + | chr4_1:52538635-52538654 | None:intergenic | 30.0% | |
| !!! | GAGAATTTTGATTCATCCAA+AGG | + | chr4_1:52538724-52538743 | None:intergenic | 30.0% |
| ATGCAAACTAGAATTTCCAT+TGG | + | chr4_1:52538780-52538799 | None:intergenic | 30.0% | |
| TCAAGAGAAATTATGTATGG+TGG | - | chr4_1:52538827-52538846 | Msa0554830:CDS | 30.0% | |
| ! | AGTTATTAGAATATGGTGGA+GGG | + | chr4_1:52538862-52538881 | None:intergenic | 30.0% |
| TAGTTATTAGAATATGGTGG+AGG | + | chr4_1:52538863-52538882 | None:intergenic | 30.0% | |
| ! | TATCAGCTAAATTGGGTTTT+TGG | - | chr4_1:52538881-52538900 | Msa0554830:CDS | 30.0% |
| AAGATGTTTGATGTGGTATT+TGG | + | chr4_1:52539051-52539070 | None:intergenic | 30.0% | |
| TTACAAAAAGCTGCTCAAAT+TGG | - | chr4_1:52539097-52539116 | Msa0554830:CDS | 30.0% | |
| ATTTCAAACCTAAACTTCCA+AGG | + | chr4_1:52539147-52539166 | None:intergenic | 30.0% | |
| ACTAATGATGTGAACAAGTT+TGG | - | chr4_1:52539184-52539203 | Msa0554830:intron | 30.0% | |
| ! | AGTTCATTACTCATTAGTCT+TGG | - | chr4_1:52539232-52539251 | Msa0554830:intron | 30.0% |
| !! | TAGAAGCACTAGTTGTTTGA+GGG | + | chr4_1:52537108-52537127 | None:intergenic | 35.0% |
| !! | TTAGAAGCACTAGTTGTTTG+AGG | + | chr4_1:52537109-52537128 | None:intergenic | 35.0% |
| AAGAGAAAAAGAAACCTTCC+AGG | - | chr4_1:52537145-52537164 | Msa0554830:CDS | 35.0% | |
| AAAGCTATAACTTCTGCTTC+AGG | + | chr4_1:52537301-52537320 | None:intergenic | 35.0% | |
| TTTATCACCAAAGACACTCA+TGG | - | chr4_1:52537318-52537337 | Msa0554830:CDS | 35.0% | |
| AGATTCTTGTGTGAAACATG+TGG | - | chr4_1:52537349-52537368 | Msa0554830:CDS | 35.0% | |
| GATTCTTGTGTGAAACATGT+GGG | - | chr4_1:52537350-52537369 | Msa0554830:CDS | 35.0% | |
| ! | AAGCACTTTTGTAGAAAGCA+TGG | - | chr4_1:52537547-52537566 | Msa0554830:intron | 35.0% |
| AAAGCTCACTCAAAAACATG+TGG | - | chr4_1:52537628-52537647 | Msa0554830:CDS | 35.0% | |
| AGAGAATACAAATGTGACTG+TGG | - | chr4_1:52537655-52537674 | Msa0554830:CDS | 35.0% | |
| ! | ACTGTGGAACTATCTTTTCA+AGG | - | chr4_1:52537671-52537690 | Msa0554830:CDS | 35.0% |
| TAACATAGAGATGGATGGAT+AGG | + | chr4_1:52537712-52537731 | None:intergenic | 35.0% | |
| CAGAATAACATAGAGATGGA+TGG | + | chr4_1:52537717-52537736 | None:intergenic | 35.0% | |
| TCTGATCACATCGTTGTAAT+CGG | - | chr4_1:52537733-52537752 | Msa0554830:CDS | 35.0% | |
| TTAGGGCAAAAACTGCAAAA+AGG | + | chr4_1:52538015-52538034 | None:intergenic | 35.0% | |
| !! | CCATGAACTTTTGTCGTTTA+GGG | + | chr4_1:52538032-52538051 | None:intergenic | 35.0% |
| !! | ACCATGAACTTTTGTCGTTT+AGG | + | chr4_1:52538033-52538052 | None:intergenic | 35.0% |
| AACGACAAAAGTTCATGGTT+TGG | - | chr4_1:52538034-52538053 | Msa0554830:intron | 35.0% | |
| AAAGTCAAAATGGGAGTAAC+CGG | + | chr4_1:52538197-52538216 | None:intergenic | 35.0% | |
| GAGCTAGACAAAAGTCAAAA+TGG | + | chr4_1:52538207-52538226 | None:intergenic | 35.0% | |
| GAAGGAACAACCAAAAGATT+TGG | + | chr4_1:52538362-52538381 | None:intergenic | 35.0% | |
| !!! | GTGAATATTTTTGGTTGAGC+AGG | - | chr4_1:52538444-52538463 | Msa0554830:intron | 35.0% |
| AGATGTTGTTCCCATTATGT+TGG | + | chr4_1:52538591-52538610 | None:intergenic | 35.0% | |
| ! | GGGTTGGCATATTGTTATTA+GGG | + | chr4_1:52538619-52538638 | None:intergenic | 35.0% |
| !! | TGGGTTGGCATATTGTTATT+AGG | + | chr4_1:52538620-52538639 | None:intergenic | 35.0% |
| TGATGATCAGGAGTTGAAAT+TGG | + | chr4_1:52538662-52538681 | None:intergenic | 35.0% | |
| ! | TCATGATGATGATGATGATC+AGG | + | chr4_1:52538674-52538693 | None:intergenic | 35.0% |
| GAATCAACCAATCAAACTAG+AGG | - | chr4_1:52538692-52538711 | Msa0554830:intron | 35.0% | |
| GTGGTTATCATTGTTTCATG+AGG | + | chr4_1:52538755-52538774 | None:intergenic | 35.0% | |
| CAAACTAGAATTTCCATTGG+TGG | + | chr4_1:52538777-52538796 | None:intergenic | 35.0% | |
| TTTGCTGAAGATGTTTGATG+TGG | + | chr4_1:52539058-52539077 | None:intergenic | 35.0% | |
| ! | AAGGAATGAAGTATCACTTG+AGG | + | chr4_1:52539128-52539147 | None:intergenic | 35.0% |
| TCAAGTGATACTTCATTCCT+TGG | - | chr4_1:52539127-52539146 | Msa0554830:CDS | 35.0% | |
| ACTTCATTCCTTGGAAGTTT+AGG | - | chr4_1:52539136-52539155 | Msa0554830:CDS | 35.0% | |
| ! | TTTGGTTGTACTGGTATGTA+TGG | - | chr4_1:52539202-52539221 | Msa0554830:intron | 35.0% |
| !! | TAGAAGCACTAGTTGTTTGA+GGG | + | chr4_1:52537108-52537127 | None:intergenic | 35.0% |
| !! | TTAGAAGCACTAGTTGTTTG+AGG | + | chr4_1:52537109-52537128 | None:intergenic | 35.0% |
| AAGAGAAAAAGAAACCTTCC+AGG | - | chr4_1:52537145-52537164 | Msa0554830:CDS | 35.0% | |
| AAAGCTATAACTTCTGCTTC+AGG | + | chr4_1:52537301-52537320 | None:intergenic | 35.0% | |
| TTTATCACCAAAGACACTCA+TGG | - | chr4_1:52537318-52537337 | Msa0554830:CDS | 35.0% | |
| AGATTCTTGTGTGAAACATG+TGG | - | chr4_1:52537349-52537368 | Msa0554830:CDS | 35.0% | |
| GATTCTTGTGTGAAACATGT+GGG | - | chr4_1:52537350-52537369 | Msa0554830:CDS | 35.0% | |
| ! | AAGCACTTTTGTAGAAAGCA+TGG | - | chr4_1:52537547-52537566 | Msa0554830:intron | 35.0% |
| AAAGCTCACTCAAAAACATG+TGG | - | chr4_1:52537628-52537647 | Msa0554830:CDS | 35.0% | |
| AGAGAATACAAATGTGACTG+TGG | - | chr4_1:52537655-52537674 | Msa0554830:CDS | 35.0% | |
| ! | ACTGTGGAACTATCTTTTCA+AGG | - | chr4_1:52537671-52537690 | Msa0554830:CDS | 35.0% |
| TAACATAGAGATGGATGGAT+AGG | + | chr4_1:52537712-52537731 | None:intergenic | 35.0% | |
| CAGAATAACATAGAGATGGA+TGG | + | chr4_1:52537717-52537736 | None:intergenic | 35.0% | |
| TCTGATCACATCGTTGTAAT+CGG | - | chr4_1:52537733-52537752 | Msa0554830:CDS | 35.0% | |
| TTAGGGCAAAAACTGCAAAA+AGG | + | chr4_1:52538015-52538034 | None:intergenic | 35.0% | |
| !! | CCATGAACTTTTGTCGTTTA+GGG | + | chr4_1:52538032-52538051 | None:intergenic | 35.0% |
| !! | ACCATGAACTTTTGTCGTTT+AGG | + | chr4_1:52538033-52538052 | None:intergenic | 35.0% |
| AACGACAAAAGTTCATGGTT+TGG | - | chr4_1:52538034-52538053 | Msa0554830:intron | 35.0% | |
| AAAGTCAAAATGGGAGTAAC+CGG | + | chr4_1:52538197-52538216 | None:intergenic | 35.0% | |
| GAGCTAGACAAAAGTCAAAA+TGG | + | chr4_1:52538207-52538226 | None:intergenic | 35.0% | |
| GAAGGAACAACCAAAAGATT+TGG | + | chr4_1:52538362-52538381 | None:intergenic | 35.0% | |
| !!! | GTGAATATTTTTGGTTGAGC+AGG | - | chr4_1:52538444-52538463 | Msa0554830:intron | 35.0% |
| AGATGTTGTTCCCATTATGT+TGG | + | chr4_1:52538591-52538610 | None:intergenic | 35.0% | |
| ! | GGGTTGGCATATTGTTATTA+GGG | + | chr4_1:52538619-52538638 | None:intergenic | 35.0% |
| !! | TGGGTTGGCATATTGTTATT+AGG | + | chr4_1:52538620-52538639 | None:intergenic | 35.0% |
| TGATGATCAGGAGTTGAAAT+TGG | + | chr4_1:52538662-52538681 | None:intergenic | 35.0% | |
| ! | TCATGATGATGATGATGATC+AGG | + | chr4_1:52538674-52538693 | None:intergenic | 35.0% |
| GAATCAACCAATCAAACTAG+AGG | - | chr4_1:52538692-52538711 | Msa0554830:intron | 35.0% | |
| GTGGTTATCATTGTTTCATG+AGG | + | chr4_1:52538755-52538774 | None:intergenic | 35.0% | |
| CAAACTAGAATTTCCATTGG+TGG | + | chr4_1:52538777-52538796 | None:intergenic | 35.0% | |
| TTTGCTGAAGATGTTTGATG+TGG | + | chr4_1:52539058-52539077 | None:intergenic | 35.0% | |
| ! | AAGGAATGAAGTATCACTTG+AGG | + | chr4_1:52539128-52539147 | None:intergenic | 35.0% |
| TCAAGTGATACTTCATTCCT+TGG | - | chr4_1:52539127-52539146 | Msa0554830:CDS | 35.0% | |
| ACTTCATTCCTTGGAAGTTT+AGG | - | chr4_1:52539136-52539155 | Msa0554830:CDS | 35.0% | |
| ! | TTTGGTTGTACTGGTATGTA+TGG | - | chr4_1:52539202-52539221 | Msa0554830:intron | 35.0% |
| ! | CTTTTTCTCTTCAAAGCAGG+AGG | + | chr4_1:52537136-52537155 | None:intergenic | 40.0% |
| ATTAACATGCCTGGATTTCC+TGG | + | chr4_1:52537166-52537185 | None:intergenic | 40.0% | |
| TTTGTAGCCATGAGTGTCTT+TGG | + | chr4_1:52537328-52537347 | None:intergenic | 40.0% | |
| TTGTGTGAAACATGTGGGAA+AGG | - | chr4_1:52537355-52537374 | Msa0554830:CDS | 40.0% | |
| AATCTACAGCTACATAGACG+TGG | - | chr4_1:52537394-52537413 | Msa0554830:CDS | 40.0% | |
| ! | GAAAGCATGGTGAAAAGAAG+TGG | - | chr4_1:52537560-52537579 | Msa0554830:intron | 40.0% |
| GTTATGCTGTTCAGTCAGAT+TGG | - | chr4_1:52537605-52537624 | Msa0554830:CDS | 40.0% | |
| TAGAGATGGATGGATAGGTT+AGG | + | chr4_1:52537707-52537726 | None:intergenic | 40.0% | |
| ! | GTTGCTCGAGAAATTAGTCT+CGG | - | chr4_1:52537778-52537797 | Msa0554830:CDS | 40.0% |
| CCCTAAACGACAAAAGTTCA+TGG | - | chr4_1:52538029-52538048 | Msa0554830:intron | 40.0% | |
| TTATGCCGTACTCATGTTTC+CGG | - | chr4_1:52538175-52538194 | Msa0554830:intron | 40.0% | |
| AGTAACCGGAAACATGAGTA+CGG | + | chr4_1:52538183-52538202 | None:intergenic | 40.0% | |
| GATAACCAGAGTTCAAATGC+GGG | + | chr4_1:52538306-52538325 | None:intergenic | 40.0% | |
| GGATAACCAGAGTTCAAATG+CGG | + | chr4_1:52538307-52538326 | None:intergenic | 40.0% | |
| !! | CAGTTAAGGACGGATTGTTT+GGG | + | chr4_1:52538328-52538347 | None:intergenic | 40.0% |
| !! | TCAGTTAAGGACGGATTGTT+TGG | + | chr4_1:52538329-52538348 | None:intergenic | 40.0% |
| ! | TTCTGCTAAGGCATCACAAA+AGG | + | chr4_1:52538495-52538514 | None:intergenic | 40.0% |
| CTTAGCAGAAGAAACAGCAA+GGG | - | chr4_1:52538505-52538524 | Msa0554830:intron | 40.0% | |
| ! | GGATAGTCCTCTAGTTTGAT+TGG | + | chr4_1:52538702-52538721 | None:intergenic | 40.0% |
| AAACTAGAGGACTATCCCTT+TGG | - | chr4_1:52538705-52538724 | Msa0554830:intron | 40.0% | |
| ACAATGATAACCACCACCAA+TGG | - | chr4_1:52538761-52538780 | Msa0554830:intron | 40.0% | |
| ACTAGAATTTCCATTGGTGG+TGG | + | chr4_1:52538774-52538793 | None:intergenic | 40.0% | |
| ACTACAACTTCACTTCCACT+AGG | - | chr4_1:52538947-52538966 | Msa0554830:CDS | 40.0% | |
| !! | TTGGTGTTGTGAGCTATACA+AGG | + | chr4_1:52539032-52539051 | None:intergenic | 40.0% |
| GTGAACAAGTTTGGTTGTAC+TGG | - | chr4_1:52539193-52539212 | Msa0554830:intron | 40.0% | |
| !! | ACTCATTAGTCTTGGCAATG+AGG | - | chr4_1:52539240-52539259 | Msa0554830:intron | 40.0% |
| GCACATGTCTACGTTTAGAA+GGG | + | chr4_1:52539303-52539322 | None:intergenic | 40.0% | |
| TGCACATGTCTACGTTTAGA+AGG | + | chr4_1:52539304-52539323 | None:intergenic | 40.0% | |
| CATGTGCAAAGTGAAGAGAA+TGG | - | chr4_1:52539316-52539335 | Msa0554830:intron | 40.0% | |
| !! | ACTAGGGATTTTCTTGGTGT+TGG | - | chr4_1:52539352-52539371 | Msa0554830:CDS | 40.0% |
| GATTGATGAAGGGTGACAAA+TGG | + | chr4_1:52539386-52539405 | None:intergenic | 40.0% | |
| TGTCACCCTTCATCAATCAA+CGG | - | chr4_1:52539388-52539407 | Msa0554830:CDS | 40.0% | |
| ! | TCCAACCGTTGATTGATGAA+GGG | + | chr4_1:52539396-52539415 | None:intergenic | 40.0% |
| ! | ATCCAACCGTTGATTGATGA+AGG | + | chr4_1:52539397-52539416 | None:intergenic | 40.0% |
| ! | CTTTTTCTCTTCAAAGCAGG+AGG | + | chr4_1:52537136-52537155 | None:intergenic | 40.0% |
| ATTAACATGCCTGGATTTCC+TGG | + | chr4_1:52537166-52537185 | None:intergenic | 40.0% | |
| TTTGTAGCCATGAGTGTCTT+TGG | + | chr4_1:52537328-52537347 | None:intergenic | 40.0% | |
| TTGTGTGAAACATGTGGGAA+AGG | - | chr4_1:52537355-52537374 | Msa0554830:CDS | 40.0% | |
| AATCTACAGCTACATAGACG+TGG | - | chr4_1:52537394-52537413 | Msa0554830:CDS | 40.0% | |
| ! | GAAAGCATGGTGAAAAGAAG+TGG | - | chr4_1:52537560-52537579 | Msa0554830:intron | 40.0% |
| GTTATGCTGTTCAGTCAGAT+TGG | - | chr4_1:52537605-52537624 | Msa0554830:CDS | 40.0% | |
| TAGAGATGGATGGATAGGTT+AGG | + | chr4_1:52537707-52537726 | None:intergenic | 40.0% | |
| ! | GTTGCTCGAGAAATTAGTCT+CGG | - | chr4_1:52537778-52537797 | Msa0554830:CDS | 40.0% |
| CCCTAAACGACAAAAGTTCA+TGG | - | chr4_1:52538029-52538048 | Msa0554830:intron | 40.0% | |
| TTATGCCGTACTCATGTTTC+CGG | - | chr4_1:52538175-52538194 | Msa0554830:intron | 40.0% | |
| AGTAACCGGAAACATGAGTA+CGG | + | chr4_1:52538183-52538202 | None:intergenic | 40.0% | |
| GATAACCAGAGTTCAAATGC+GGG | + | chr4_1:52538306-52538325 | None:intergenic | 40.0% | |
| GGATAACCAGAGTTCAAATG+CGG | + | chr4_1:52538307-52538326 | None:intergenic | 40.0% | |
| !! | CAGTTAAGGACGGATTGTTT+GGG | + | chr4_1:52538328-52538347 | None:intergenic | 40.0% |
| !! | TCAGTTAAGGACGGATTGTT+TGG | + | chr4_1:52538329-52538348 | None:intergenic | 40.0% |
| ! | TTCTGCTAAGGCATCACAAA+AGG | + | chr4_1:52538495-52538514 | None:intergenic | 40.0% |
| CTTAGCAGAAGAAACAGCAA+GGG | - | chr4_1:52538505-52538524 | Msa0554830:intron | 40.0% | |
| ! | GGATAGTCCTCTAGTTTGAT+TGG | + | chr4_1:52538702-52538721 | None:intergenic | 40.0% |
| AAACTAGAGGACTATCCCTT+TGG | - | chr4_1:52538705-52538724 | Msa0554830:intron | 40.0% | |
| ACAATGATAACCACCACCAA+TGG | - | chr4_1:52538761-52538780 | Msa0554830:intron | 40.0% | |
| ACTAGAATTTCCATTGGTGG+TGG | + | chr4_1:52538774-52538793 | None:intergenic | 40.0% | |
| ACTACAACTTCACTTCCACT+AGG | - | chr4_1:52538947-52538966 | Msa0554830:CDS | 40.0% | |
| !! | TTGGTGTTGTGAGCTATACA+AGG | + | chr4_1:52539032-52539051 | None:intergenic | 40.0% |
| GTGAACAAGTTTGGTTGTAC+TGG | - | chr4_1:52539193-52539212 | Msa0554830:intron | 40.0% | |
| !! | ACTCATTAGTCTTGGCAATG+AGG | - | chr4_1:52539240-52539259 | Msa0554830:intron | 40.0% |
| GCACATGTCTACGTTTAGAA+GGG | + | chr4_1:52539303-52539322 | None:intergenic | 40.0% | |
| TGCACATGTCTACGTTTAGA+AGG | + | chr4_1:52539304-52539323 | None:intergenic | 40.0% | |
| CATGTGCAAAGTGAAGAGAA+TGG | - | chr4_1:52539316-52539335 | Msa0554830:intron | 40.0% | |
| !! | ACTAGGGATTTTCTTGGTGT+TGG | - | chr4_1:52539352-52539371 | Msa0554830:CDS | 40.0% |
| GATTGATGAAGGGTGACAAA+TGG | + | chr4_1:52539386-52539405 | None:intergenic | 40.0% | |
| TGTCACCCTTCATCAATCAA+CGG | - | chr4_1:52539388-52539407 | Msa0554830:CDS | 40.0% | |
| ! | TCCAACCGTTGATTGATGAA+GGG | + | chr4_1:52539396-52539415 | None:intergenic | 40.0% |
| ! | ATCCAACCGTTGATTGATGA+AGG | + | chr4_1:52539397-52539416 | None:intergenic | 40.0% |
| AGAAACCTTCCAGGAAATCC+AGG | - | chr4_1:52537154-52537173 | Msa0554830:CDS | 45.0% | |
| GACGTGGACATAATCTTCCA+TGG | - | chr4_1:52537410-52537429 | Msa0554830:CDS | 45.0% | |
| GATCTCTGCTTAAGCTTCCA+TGG | + | chr4_1:52537430-52537449 | None:intergenic | 45.0% | |
| !! | TGGTGGACACAAGTTTTCTC+TGG | + | chr4_1:52537487-52537506 | None:intergenic | 45.0% |
| TGTCCACCATGATCCTTCAA+GGG | - | chr4_1:52537498-52537517 | Msa0554830:intron | 45.0% | |
| TTAGTCTCGGCAGTTGTTTG+CGG | - | chr4_1:52537791-52537810 | Msa0554830:CDS | 45.0% | |
| GGAAACATGAGTACGGCATA+AGG | + | chr4_1:52538176-52538195 | None:intergenic | 45.0% | |
| AACTGTCTCGTTCTCGAGAA+TGG | - | chr4_1:52538241-52538260 | Msa0554830:intron | 45.0% | |
| !! | CCTTGCTGTTTCTTCTGCTA+AGG | + | chr4_1:52538507-52538526 | None:intergenic | 45.0% |
| CCTTAGCAGAAGAAACAGCA+AGG | - | chr4_1:52538504-52538523 | Msa0554830:intron | 45.0% | |
| GTGCAAAGTGAAGAGAATGG+AGG | - | chr4_1:52539319-52539338 | Msa0554830:CDS | 45.0% | |
| CAAAGTGAAGAGAATGGAGG+AGG | - | chr4_1:52539322-52539341 | Msa0554830:CDS | 45.0% | |
| ! | GGGCAAACTAGGGATTTTCT+TGG | - | chr4_1:52539346-52539365 | Msa0554830:CDS | 45.0% |
| ACCCTTCATCAATCAACGGT+TGG | - | chr4_1:52539392-52539411 | Msa0554830:CDS | 45.0% | |
| AGAAACCTTCCAGGAAATCC+AGG | - | chr4_1:52537154-52537173 | Msa0554830:CDS | 45.0% | |
| GACGTGGACATAATCTTCCA+TGG | - | chr4_1:52537410-52537429 | Msa0554830:CDS | 45.0% | |
| GATCTCTGCTTAAGCTTCCA+TGG | + | chr4_1:52537430-52537449 | None:intergenic | 45.0% | |
| !! | TGGTGGACACAAGTTTTCTC+TGG | + | chr4_1:52537487-52537506 | None:intergenic | 45.0% |
| TGTCCACCATGATCCTTCAA+GGG | - | chr4_1:52537498-52537517 | Msa0554830:intron | 45.0% | |
| TTAGTCTCGGCAGTTGTTTG+CGG | - | chr4_1:52537791-52537810 | Msa0554830:CDS | 45.0% | |
| GGAAACATGAGTACGGCATA+AGG | + | chr4_1:52538176-52538195 | None:intergenic | 45.0% | |
| AACTGTCTCGTTCTCGAGAA+TGG | - | chr4_1:52538241-52538260 | Msa0554830:intron | 45.0% | |
| !! | CCTTGCTGTTTCTTCTGCTA+AGG | + | chr4_1:52538507-52538526 | None:intergenic | 45.0% |
| CCTTAGCAGAAGAAACAGCA+AGG | - | chr4_1:52538504-52538523 | Msa0554830:intron | 45.0% | |
| GTGCAAAGTGAAGAGAATGG+AGG | - | chr4_1:52539319-52539338 | Msa0554830:CDS | 45.0% | |
| CAAAGTGAAGAGAATGGAGG+AGG | - | chr4_1:52539322-52539341 | Msa0554830:CDS | 45.0% | |
| ! | GGGCAAACTAGGGATTTTCT+TGG | - | chr4_1:52539346-52539365 | Msa0554830:CDS | 45.0% |
| ACCCTTCATCAATCAACGGT+TGG | - | chr4_1:52539392-52539411 | Msa0554830:CDS | 45.0% | |
| ACATGCCTGGATTTCCTGGA+AGG | + | chr4_1:52537162-52537181 | None:intergenic | 50.0% | |
| GTGTCCACCATGATCCTTCA+AGG | - | chr4_1:52537497-52537516 | Msa0554830:intron | 50.0% | |
| CAAGTGCCCTTGAAGGATCA+TGG | + | chr4_1:52537507-52537526 | None:intergenic | 50.0% | |
| !! | CATGATCCTTCAAGGGCACT+TGG | - | chr4_1:52537505-52537524 | Msa0554830:intron | 50.0% |
| AAGTCACCAAGTGCCCTTGA+AGG | + | chr4_1:52537514-52537533 | None:intergenic | 50.0% | |
| ! | AGGGCACTTGGTGACTTAAC+TGG | - | chr4_1:52537517-52537536 | Msa0554830:intron | 50.0% |
| ! | GGGCACTTGGTGACTTAACT+GGG | - | chr4_1:52537518-52537537 | Msa0554830:intron | 50.0% |
| TCGTTCCCGCATTTGAACTC+TGG | - | chr4_1:52538298-52538317 | Msa0554830:intron | 50.0% | |
| AGTGAAGAGAATGGAGGAGG+AGG | - | chr4_1:52539325-52539344 | Msa0554830:CDS | 50.0% | |
| GTGAAGAGAATGGAGGAGGA+GGG | - | chr4_1:52539326-52539345 | Msa0554830:CDS | 50.0% | |
| ACATGCCTGGATTTCCTGGA+AGG | + | chr4_1:52537162-52537181 | None:intergenic | 50.0% | |
| GTGTCCACCATGATCCTTCA+AGG | - | chr4_1:52537497-52537516 | Msa0554830:intron | 50.0% | |
| CAAGTGCCCTTGAAGGATCA+TGG | + | chr4_1:52537507-52537526 | None:intergenic | 50.0% | |
| !! | CATGATCCTTCAAGGGCACT+TGG | - | chr4_1:52537505-52537524 | Msa0554830:intron | 50.0% |
| AAGTCACCAAGTGCCCTTGA+AGG | + | chr4_1:52537514-52537533 | None:intergenic | 50.0% | |
| ! | AGGGCACTTGGTGACTTAAC+TGG | - | chr4_1:52537517-52537536 | Msa0554830:intron | 50.0% |
| ! | GGGCACTTGGTGACTTAACT+GGG | - | chr4_1:52537518-52537537 | Msa0554830:intron | 50.0% |
| TCGTTCCCGCATTTGAACTC+TGG | - | chr4_1:52538298-52538317 | Msa0554830:intron | 50.0% | |
| AGTGAAGAGAATGGAGGAGG+AGG | - | chr4_1:52539325-52539344 | Msa0554830:CDS | 50.0% | |
| GTGAAGAGAATGGAGGAGGA+GGG | - | chr4_1:52539326-52539345 | Msa0554830:CDS | 50.0% | |
| GTGCCCTTGAAGGATCATGG+TGG | + | chr4_1:52537504-52537523 | None:intergenic | 55.0% | |
| ATGGAGGAGGAGGGCAAACT+AGG | - | chr4_1:52539335-52539354 | Msa0554830:CDS | 55.0% | |
| TGGAGGAGGAGGGCAAACTA+GGG | - | chr4_1:52539336-52539355 | Msa0554830:CDS | 55.0% | |
| GTGCCCTTGAAGGATCATGG+TGG | + | chr4_1:52537504-52537523 | None:intergenic | 55.0% | |
| ATGGAGGAGGAGGGCAAACT+AGG | - | chr4_1:52539335-52539354 | Msa0554830:CDS | 55.0% | |
| TGGAGGAGGAGGGCAAACTA+GGG | - | chr4_1:52539336-52539355 | Msa0554830:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 52537073 | 52539420 | 52537073 | ID=Msa0554830;Name=Msa0554830 |
| chr4_1 | mRNA | 52537073 | 52539420 | 52537073 | ID=Msa0554830-mRNA-1;Parent=Msa0554830;Name=Msa0554830-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.33|0|1|1|1|4|0|452 |
| chr4_1 | exon | 52539318 | 52539420 | 52539318 | ID=Msa0554830-mRNA-1:exon:15167;Parent=Msa0554830-mRNA-1 |
| chr4_1 | exon | 52538801 | 52539197 | 52538801 | ID=Msa0554830-mRNA-1:exon:15166;Parent=Msa0554830-mRNA-1 |
| chr4_1 | exon | 52537598 | 52538027 | 52537598 | ID=Msa0554830-mRNA-1:exon:15165;Parent=Msa0554830-mRNA-1 |
| chr4_1 | exon | 52537073 | 52537501 | 52537073 | ID=Msa0554830-mRNA-1:exon:15164;Parent=Msa0554830-mRNA-1 |
| chr4_1 | CDS | 52539318 | 52539420 | 52539318 | ID=Msa0554830-mRNA-1:cds;Parent=Msa0554830-mRNA-1 |
| chr4_1 | CDS | 52538801 | 52539197 | 52538801 | ID=Msa0554830-mRNA-1:cds;Parent=Msa0554830-mRNA-1 |
| chr4_1 | CDS | 52537598 | 52538027 | 52537598 | ID=Msa0554830-mRNA-1:cds;Parent=Msa0554830-mRNA-1 |
| chr4_1 | CDS | 52537073 | 52537501 | 52537073 | ID=Msa0554830-mRNA-1:cds;Parent=Msa0554830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
