Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648920 | XP_024638423.1 | 97.489 | 438 | 6 | 1 | 1 | 433 | 63 | 500 | 0.0 | 888 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648920 | sp|Q9ZWA6|IDD3_ARATH | 51.471 | 476 | 154 | 13 | 1 | 433 | 65 | 506 | 5.53e-135 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648920 | A0A396IAJ3 | 97.489 | 438 | 6 | 1 | 1 | 433 | 63 | 500 | 0.0 | 888 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0648920 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0099890 | Msa0648920 | 0.800432 | 1.445542e-48 | -8.615850e-47 |
| Msa0608410 | Msa0648920 | 0.943787 | 6.396775e-103 | -8.615850e-47 |
| Msa0648920 | Msa0685390 | -0.805635 | 1.213917e-49 | -8.615850e-47 |
| Msa0648920 | Msa0691420 | 0.924992 | 3.351659e-90 | -8.615850e-47 |
| Msa0648920 | Msa1119670 | 0.800550 | 1.367195e-48 | -8.615850e-47 |
| Msa0648920 | Msa1273320 | 0.820251 | 7.572094e-53 | -8.615850e-47 |
| Msa0648920 | Msa1355540 | 0.808744 | 2.664872e-50 | -8.615850e-47 |
| Msa0264710 | Msa0648920 | 0.810022 | 1.417139e-50 | -8.615850e-47 |
| Msa0302750 | Msa0648920 | 0.806786 | 6.945579e-50 | -8.615850e-47 |
| Msa0554830 | Msa0648920 | 0.809748 | 1.623570e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648920 | MtrunA17_Chr4g0040571 | 97.489 | 438 | 6 | 1 | 1 | 433 | 63 | 500 | 0.0 | 888 |
| Msa0648920 | MtrunA17_Chr1g0181381 | 50.423 | 355 | 124 | 9 | 1 | 341 | 62 | 378 | 1.64e-99 | 306 |
| Msa0648920 | MtrunA17_Chr7g0268961 | 49.577 | 355 | 104 | 9 | 1 | 346 | 46 | 334 | 1.55e-95 | 295 |
| Msa0648920 | MtrunA17_Chr8g0373541 | 80.625 | 160 | 26 | 1 | 1 | 155 | 57 | 216 | 5.14e-95 | 295 |
| Msa0648920 | MtrunA17_Chr2g0330171 | 88.571 | 140 | 16 | 0 | 1 | 140 | 70 | 209 | 2.40e-94 | 291 |
| Msa0648920 | MtrunA17_Chr8g0342421 | 89.286 | 140 | 15 | 0 | 1 | 140 | 86 | 225 | 8.28e-94 | 292 |
| Msa0648920 | MtrunA17_Chr4g0029521 | 41.304 | 460 | 166 | 15 | 1 | 419 | 62 | 458 | 3.21e-93 | 290 |
| Msa0648920 | MtrunA17_Chr7g0263941 | 66.986 | 209 | 55 | 4 | 1 | 206 | 58 | 255 | 5.84e-93 | 286 |
| Msa0648920 | MtrunA17_Chr1g0162971 | 44.104 | 424 | 153 | 11 | 1 | 419 | 65 | 409 | 2.74e-92 | 286 |
| Msa0648920 | MtrunA17_Chr1g0210821 | 45.897 | 390 | 153 | 8 | 1 | 356 | 68 | 433 | 1.03e-91 | 288 |
| Msa0648920 | MtrunA17_Chr1g0163001 | 87.770 | 139 | 17 | 0 | 1 | 139 | 67 | 205 | 3.55e-91 | 285 |
| Msa0648920 | MtrunA17_Chr1g0199101 | 86.232 | 138 | 19 | 0 | 1 | 138 | 71 | 208 | 1.32e-90 | 284 |
| Msa0648920 | MtrunA17_Chr1g0185121 | 85.315 | 143 | 20 | 1 | 1 | 142 | 64 | 206 | 1.56e-89 | 278 |
| Msa0648920 | MtrunA17_Chr1g0151351 | 80.667 | 150 | 28 | 1 | 1 | 149 | 65 | 214 | 1.97e-88 | 276 |
| Msa0648920 | MtrunA17_Chr2g0326381 | 55.794 | 233 | 85 | 5 | 1 | 230 | 56 | 273 | 8.11e-86 | 268 |
| Msa0648920 | MtrunA17_Chr2g0324991 | 93.220 | 118 | 8 | 0 | 1 | 118 | 16 | 133 | 1.27e-79 | 243 |
| Msa0648920 | MtrunA17_Chr3g0141431 | 76.119 | 134 | 31 | 1 | 1 | 133 | 46 | 179 | 1.21e-78 | 249 |
| Msa0648920 | MtrunA17_Chr6g0479921 | 62.879 | 132 | 48 | 1 | 1 | 131 | 53 | 184 | 5.93e-58 | 197 |
| Msa0648920 | MtrunA17_Chr8g0375521 | 62.879 | 132 | 47 | 2 | 1 | 130 | 51 | 182 | 1.25e-56 | 192 |
| Msa0648920 | MtrunA17_Chr2g0324981 | 50.916 | 273 | 80 | 17 | 155 | 419 | 5 | 231 | 4.67e-46 | 159 |
| Msa0648920 | MtrunA17_Chr1g0200421 | 34.177 | 158 | 88 | 4 | 1 | 142 | 246 | 403 | 2.09e-21 | 96.7 |
| Msa0648920 | MtrunA17_Chr2g0320341 | 37.594 | 133 | 69 | 4 | 8 | 126 | 246 | 378 | 6.34e-21 | 94.4 |
| Msa0648920 | MtrunA17_Chr3g0123941 | 36.496 | 137 | 79 | 3 | 1 | 129 | 132 | 268 | 3.13e-20 | 91.3 |
| Msa0648920 | MtrunA17_Chr5g0422571 | 33.333 | 156 | 93 | 4 | 1 | 146 | 109 | 263 | 1.76e-19 | 88.6 |
| Msa0648920 | MtrunA17_Chr8g0382121 | 35.766 | 137 | 77 | 5 | 1 | 126 | 120 | 256 | 2.33e-18 | 85.5 |
| Msa0648920 | MtrunA17_Chr7g0258011 | 30.488 | 164 | 96 | 5 | 1 | 147 | 184 | 346 | 3.63e-17 | 82.4 |
| Msa0648920 | MtrunA17_Chr4g0053341 | 34.058 | 138 | 81 | 4 | 1 | 129 | 82 | 218 | 3.97e-17 | 80.5 |
| Msa0648920 | MtrunA17_Chr8g0352011 | 33.742 | 163 | 87 | 6 | 1 | 146 | 174 | 332 | 5.35e-17 | 82.0 |
| Msa0648920 | MtrunA17_Chr1g0198651 | 33.557 | 149 | 86 | 5 | 1 | 137 | 110 | 257 | 9.82e-17 | 80.5 |
| Msa0648920 | MtrunA17_Chr1g0173841 | 31.138 | 167 | 97 | 5 | 1 | 150 | 223 | 388 | 3.50e-16 | 80.1 |
| Msa0648920 | MtrunA17_Chr2g0321291 | 34.328 | 134 | 78 | 4 | 5 | 129 | 145 | 277 | 2.87e-15 | 76.3 |
| Msa0648920 | MtrunA17_Chr2g0328921 | 31.884 | 138 | 84 | 4 | 1 | 129 | 146 | 282 | 3.75e-15 | 75.9 |
| Msa0648920 | MtrunA17_Chr4g0026521 | 32.836 | 134 | 80 | 4 | 5 | 129 | 130 | 262 | 6.31e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648920 | AT1G03840.2 | 51.471 | 476 | 154 | 13 | 1 | 433 | 63 | 504 | 3.81e-136 | 400 |
| Msa0648920 | AT1G03840.1 | 51.471 | 476 | 154 | 13 | 1 | 433 | 65 | 506 | 5.63e-136 | 400 |
| Msa0648920 | AT5G44160.2 | 50.000 | 468 | 137 | 15 | 1 | 433 | 22 | 427 | 3.08e-128 | 377 |
| Msa0648920 | AT5G44160.1 | 50.000 | 468 | 137 | 15 | 1 | 433 | 61 | 466 | 3.09e-128 | 379 |
| Msa0648920 | AT3G50700.1 | 87.770 | 139 | 17 | 0 | 1 | 139 | 58 | 196 | 2.58e-94 | 291 |
| Msa0648920 | AT5G03150.1 | 70.466 | 193 | 43 | 5 | 1 | 189 | 77 | 259 | 3.95e-92 | 287 |
| Msa0648920 | AT2G02080.6 | 85.612 | 139 | 20 | 0 | 1 | 139 | 1 | 139 | 6.05e-91 | 282 |
| Msa0648920 | AT2G02080.2 | 85.612 | 139 | 20 | 0 | 1 | 139 | 1 | 139 | 6.05e-91 | 282 |
| Msa0648920 | AT2G02080.1 | 85.612 | 139 | 20 | 0 | 1 | 139 | 78 | 216 | 9.36e-91 | 284 |
| Msa0648920 | AT2G02080.4 | 85.612 | 139 | 20 | 0 | 1 | 139 | 78 | 216 | 9.36e-91 | 284 |
| Msa0648920 | AT2G02080.5 | 85.612 | 139 | 20 | 0 | 1 | 139 | 78 | 216 | 9.36e-91 | 284 |
| Msa0648920 | AT2G02080.3 | 85.612 | 139 | 20 | 0 | 1 | 139 | 78 | 216 | 9.36e-91 | 284 |
| Msa0648920 | AT3G45260.2 | 77.301 | 163 | 32 | 2 | 1 | 158 | 63 | 225 | 1.18e-90 | 282 |
| Msa0648920 | AT3G45260.1 | 77.301 | 163 | 32 | 2 | 1 | 158 | 63 | 225 | 1.18e-90 | 282 |
| Msa0648920 | AT3G13810.6 | 88.571 | 140 | 15 | 1 | 1 | 139 | 75 | 214 | 4.06e-90 | 282 |
| Msa0648920 | AT3G13810.4 | 88.571 | 140 | 15 | 1 | 1 | 139 | 94 | 233 | 4.95e-90 | 282 |
| Msa0648920 | AT3G13810.1 | 88.571 | 140 | 15 | 1 | 1 | 139 | 94 | 233 | 4.95e-90 | 282 |
| Msa0648920 | AT1G14580.1 | 84.173 | 139 | 22 | 0 | 1 | 139 | 77 | 215 | 4.97e-90 | 281 |
| Msa0648920 | AT1G14580.2 | 84.173 | 139 | 22 | 0 | 1 | 139 | 77 | 215 | 4.97e-90 | 281 |
| Msa0648920 | AT3G13810.5 | 88.571 | 140 | 15 | 1 | 1 | 139 | 89 | 228 | 5.19e-90 | 282 |
| Msa0648920 | AT3G13810.3 | 88.571 | 140 | 15 | 1 | 1 | 139 | 81 | 220 | 5.51e-90 | 282 |
| Msa0648920 | AT3G13810.2 | 88.571 | 140 | 15 | 1 | 1 | 139 | 95 | 234 | 7.56e-90 | 282 |
| Msa0648920 | AT1G14580.3 | 84.173 | 139 | 22 | 0 | 1 | 139 | 91 | 229 | 1.06e-89 | 280 |
| Msa0648920 | AT2G02070.2 | 84.892 | 139 | 21 | 0 | 1 | 139 | 76 | 214 | 1.37e-89 | 284 |
| Msa0648920 | AT2G02070.1 | 84.892 | 139 | 21 | 0 | 1 | 139 | 76 | 214 | 1.37e-89 | 284 |
| Msa0648920 | AT1G55110.3 | 85.816 | 141 | 19 | 1 | 1 | 140 | 87 | 227 | 2.97e-89 | 278 |
| Msa0648920 | AT1G55110.1 | 85.816 | 141 | 19 | 1 | 1 | 140 | 87 | 227 | 2.97e-89 | 278 |
| Msa0648920 | AT1G55110.2 | 85.816 | 141 | 19 | 1 | 1 | 140 | 87 | 227 | 2.97e-89 | 278 |
| Msa0648920 | AT4G02670.1 | 80.405 | 148 | 28 | 1 | 1 | 147 | 77 | 224 | 8.67e-87 | 270 |
| Msa0648920 | AT4G02670.2 | 80.405 | 148 | 28 | 1 | 1 | 147 | 79 | 226 | 9.71e-87 | 270 |
| Msa0648920 | AT1G25250.1 | 41.107 | 253 | 133 | 4 | 1 | 240 | 34 | 283 | 1.34e-58 | 196 |
| Msa0648920 | AT1G25250.3 | 41.107 | 253 | 133 | 4 | 1 | 240 | 57 | 306 | 1.51e-58 | 197 |
| Msa0648920 | AT1G68130.1 | 65.152 | 132 | 44 | 2 | 1 | 130 | 65 | 196 | 2.12e-58 | 197 |
| Msa0648920 | AT2G01940.1 | 64.925 | 134 | 45 | 2 | 1 | 132 | 68 | 201 | 2.55e-58 | 197 |
| Msa0648920 | AT2G01940.3 | 63.704 | 135 | 46 | 3 | 1 | 132 | 68 | 202 | 2.05e-54 | 187 |
| Msa0648920 | AT1G68130.2 | 66.364 | 110 | 35 | 2 | 23 | 130 | 1 | 110 | 3.40e-46 | 162 |
| Msa0648920 | AT1G25250.2 | 39.394 | 231 | 124 | 4 | 23 | 240 | 1 | 228 | 4.59e-46 | 161 |
| Msa0648920 | AT2G01940.2 | 66.071 | 112 | 36 | 2 | 23 | 132 | 1 | 112 | 8.61e-46 | 162 |
| Msa0648920 | AT1G34370.3 | 31.383 | 188 | 102 | 5 | 1 | 161 | 29 | 216 | 4.29e-21 | 93.2 |
| Msa0648920 | AT1G34370.2 | 31.383 | 188 | 102 | 5 | 1 | 161 | 239 | 426 | 7.45e-21 | 95.1 |
| Msa0648920 | AT1G34370.1 | 31.383 | 188 | 102 | 5 | 1 | 161 | 239 | 426 | 7.45e-21 | 95.1 |
| Msa0648920 | AT5G22890.1 | 33.566 | 143 | 81 | 3 | 1 | 129 | 212 | 354 | 8.38e-21 | 94.0 |
| Msa0648920 | AT1G13290.1 | 33.557 | 149 | 87 | 5 | 1 | 138 | 96 | 243 | 4.27e-17 | 82.0 |
| Msa0648920 | AT1G34790.1 | 34.615 | 156 | 85 | 5 | 6 | 145 | 145 | 299 | 8.95e-17 | 81.3 |
| Msa0648920 | AT3G20880.1 | 32.609 | 138 | 83 | 4 | 1 | 129 | 251 | 387 | 3.59e-16 | 80.5 |
| Msa0648920 | AT3G57670.1 | 30.303 | 165 | 97 | 5 | 1 | 148 | 212 | 375 | 5.71e-16 | 79.7 |
| Msa0648920 | AT1G08290.1 | 36.296 | 135 | 75 | 5 | 5 | 129 | 179 | 312 | 6.83e-16 | 79.0 |
| Msa0648920 | AT1G51220.1 | 31.884 | 138 | 84 | 4 | 1 | 129 | 173 | 309 | 1.77e-15 | 77.8 |
Find 85 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAATAACTATCAGCTAAAT+TGG | 0.096349 | 4_3:-55461204 | Msa0648920:CDS |
| GTTTGAAAATTGAAGGAAAA+TGG | 0.140606 | 4_3:+55461431 | None:intergenic |
| TGGGTTGGCATATTGTTATT+AGG | 0.224791 | 4_3:+55461451 | None:intergenic |
| TAAACAACAGCTCATTATTA+AGG | 0.225341 | 4_3:-55461522 | Msa0648920:CDS |
| ACTTCATTCCTTGGAAGTTT+AGG | 0.253137 | 4_3:-55460941 | Msa0648920:CDS |
| AGGGCACTTGGTGACTTAAC+TGG | 0.259047 | 4_3:-55462532 | Msa0648920:CDS |
| AGCTGATAGTTATTAGAATA+TGG | 0.265620 | 4_3:+55461211 | None:intergenic |
| TGGTAATTACACCAACATAA+TGG | 0.296549 | 4_3:-55461491 | Msa0648920:CDS |
| AAGATGTTTGATGTGGTATT+TGG | 0.298081 | 4_3:+55461029 | None:intergenic |
| GGGTTGGCATATTGTTATTA+GGG | 0.301259 | 4_3:+55461452 | None:intergenic |
| TAGTACTAGTAATTAATTCT+TGG | 0.306930 | 4_3:+55461149 | None:intergenic |
| AAACATTAATGTTAATGTTA+AGG | 0.353425 | 4_3:-55461107 | Msa0648920:CDS |
| TGATGATCAGGAGTTGAAAT+TGG | 0.355744 | 4_3:+55461409 | None:intergenic |
| TGCACATGTCTACGTTTAGA+AGG | 0.356777 | 4_3:+55460776 | None:intergenic |
| GGTAATTACACCAACATAAT+GGG | 0.361813 | 4_3:-55461490 | Msa0648920:CDS |
| GGATAGTCCTCTAGTTTGAT+TGG | 0.388786 | 4_3:+55461378 | None:intergenic |
| TCAAGTGATACTTCATTCCT+TGG | 0.409861 | 4_3:-55460950 | Msa0648920:CDS |
| TATACAAGGAAGAAATTTGT+TGG | 0.410040 | 4_3:+55461062 | None:intergenic |
| TAATAACTATCAGCTAAATT+GGG | 0.410339 | 4_3:-55461203 | Msa0648920:CDS |
| GAAATTGGTTTGAAAATTGA+AGG | 0.411531 | 4_3:+55461424 | None:intergenic |
| AAACAACAGCTCATTATTAA+GGG | 0.419725 | 4_3:-55461521 | Msa0648920:CDS |
| CCTTGCTGTTTCTTCTGCTA+AGG | 0.425077 | 4_3:+55461564 | None:intergenic |
| ATGGAGGAGGAGGGCAAACT+AGG | 0.425755 | 4_3:-55460742 | Msa0648920:CDS |
| TTTGAAAATTGAAGGAAAAT+GGG | 0.430601 | 4_3:+55461432 | None:intergenic |
| GTGTCCACCATGATCCTTCA+AGG | 0.447211 | 4_3:-55462552 | Msa0648920:CDS |
| AAACTAGAGGACTATCCCTT+TGG | 0.451953 | 4_3:-55461372 | Msa0648920:CDS |
| TTGGTTGATTGATGATGATC+AGG | 0.455820 | 4_3:+55461397 | None:intergenic |
| GTTCTCTGCTTAAGCTTCCA+TGG | 0.456088 | 4_3:+55462622 | None:intergenic |
| ACTAATGATGTGAACAAGTT+TGG | 0.457937 | 4_3:-55460893 | Msa0648920:CDS |
| GTTATGCTGTTCAGTCAGAT+TGG | 0.460465 | 4_3:-55462444 | Msa0648920:CDS |
| GTGAACAAGTTTGGTGGTAC+TGG | 0.464971 | 4_3:-55460884 | Msa0648920:CDS |
| TTCTGCTAAGGCATCACAAA+AGG | 0.465130 | 4_3:+55461576 | None:intergenic |
| AAAATTGAAGGAAAATGGGT+TGG | 0.476598 | 4_3:+55461436 | None:intergenic |
| ATCCAACCGTTGATTGATGA+AGG | 0.480114 | 4_3:+55460683 | None:intergenic |
| AAGTCACCAAGTGCCCTTGA+AGG | 0.485801 | 4_3:+55462538 | None:intergenic |
| CAAGGTGAAGAGAATGGAGG+AGG | 0.488030 | 4_3:-55460755 | Msa0648920:CDS |
| GGTGAAGAGAATGGAGGAGG+AGG | 0.498727 | 4_3:-55460752 | Msa0648920:CDS |
| AGTTCATTACTCATTAGTCT+TGG | 0.500073 | 4_3:-55460845 | Msa0648920:CDS |
| TTTGGTGGTACTGGTATGTA+TGG | 0.508130 | 4_3:-55460875 | Msa0648920:CDS |
| CAAACTAGAATTTCCATTGG+TGG | 0.513839 | 4_3:+55461303 | None:intergenic |
| CATGATCCTTCAAGGGCACT+TGG | 0.515364 | 4_3:-55462544 | Msa0648920:CDS |
| ACCCTTCATCAATCAACGGT+TGG | 0.521243 | 4_3:-55460685 | Msa0648920:CDS |
| ACTAGAATTTCCATTGGTGG+TGG | 0.523314 | 4_3:+55461306 | None:intergenic |
| GGGCACTTGGTGACTTAACT+GGG | 0.533578 | 4_3:-55462531 | Msa0648920:CDS |
| GAAAGCATGGTGAAAAGAAG+TGG | 0.534661 | 4_3:-55462489 | Msa0648920:CDS |
| TCATCAAGAGAAATTATGTA+TGG | 0.535107 | 4_3:-55461253 | Msa0648920:CDS |
| AGATGTTGTTCCCATTATGT+TGG | 0.540728 | 4_3:+55461480 | None:intergenic |
| CAAGTGCCCTTGAAGGATCA+TGG | 0.541455 | 4_3:+55462545 | None:intergenic |
| TGGAGGAGGAGGGCAAACTA+GGG | 0.541684 | 4_3:-55460741 | Msa0648920:CDS |
| GATTGATGAAGGGTGACAAA+TGG | 0.546230 | 4_3:+55460694 | None:intergenic |
| ACAATGATAACCACCACCAA+TGG | 0.547801 | 4_3:-55461316 | Msa0648920:CDS |
| TAGTTATTAGAATATGGTGG+AGG | 0.547810 | 4_3:+55461217 | None:intergenic |
| GTGGTTATCATTGTTTCATG+AGG | 0.548154 | 4_3:+55461325 | None:intergenic |
| ACTCATTAGTCTTGGCAATG+AGG | 0.548463 | 4_3:-55460837 | Msa0648920:CDS |
| ATGCAAACTAGAATTTCCAT+TGG | 0.550334 | 4_3:+55461300 | None:intergenic |
| ATTTCAAACCTAAACTTCCA+AGG | 0.550495 | 4_3:+55460933 | None:intergenic |
| TCAAGAGAAATTATGTATGG+TGG | 0.557028 | 4_3:-55461250 | Msa0648920:CDS |
| TTGTGTGAAACATGTGGGAA+AGG | 0.560203 | 4_3:-55462694 | Msa0648920:CDS |
| TTGGTGTTGTGAGCTATACA+AGG | 0.564753 | 4_3:+55461048 | None:intergenic |
| GACGTGGACATAATCTTCCA+TGG | 0.576178 | 4_3:-55462639 | Msa0648920:CDS |
| TCATTATTAAGGGGTAACAT+TGG | 0.591412 | 4_3:-55461511 | Msa0648920:CDS |
| GCACATGTCTACGTTTAGAA+GGG | 0.592522 | 4_3:+55460777 | None:intergenic |
| TGTCACCCTTCATCAATCAA+CGG | 0.597702 | 4_3:-55460689 | Msa0648920:CDS |
| CATGTGCAAGGTGAAGAGAA+TGG | 0.598271 | 4_3:-55460761 | Msa0648920:CDS |
| AGTTATTAGAATATGGTGGA+GGG | 0.602415 | 4_3:+55461218 | None:intergenic |
| GTGAAGAGAATGGAGGAGGA+GGG | 0.608002 | 4_3:-55460751 | Msa0648920:CDS |
| AAGGAATGAAGTATCACTTG+AGG | 0.616790 | 4_3:+55460952 | None:intergenic |
| TTAACATTAATGTTTCCTAG+TGG | 0.620526 | 4_3:+55461115 | None:intergenic |
| AACAACAGCTCATTATTAAG+GGG | 0.621367 | 4_3:-55461520 | Msa0648920:CDS |
| AATGATGTGAACAAGTTTGG+TGG | 0.623059 | 4_3:-55460890 | Msa0648920:CDS |
| TCCAACCGTTGATTGATGAA+GGG | 0.630023 | 4_3:+55460684 | None:intergenic |
| TGTCCACCATGATCCTTCAA+GGG | 0.631692 | 4_3:-55462551 | Msa0648920:CDS |
| CAATCAACCAATCAAACTAG+AGG | 0.641582 | 4_3:-55461385 | Msa0648920:CDS |
| TGATAGTTATTAGAATATGG+TGG | 0.647387 | 4_3:+55461214 | None:intergenic |
| CCTTAGCAGAAGAAACAGCA+AGG | 0.647661 | 4_3:-55461564 | Msa0648920:CDS |
| TTTGCTGAAGATGTTTGATG+TGG | 0.648760 | 4_3:+55461022 | None:intergenic |
| ACTACAACTTCACTTCCACT+AGG | 0.649669 | 4_3:-55461130 | Msa0648920:CDS |
| GATTCTTGTGTGAAACATGT+GGG | 0.660378 | 4_3:-55462699 | Msa0648920:CDS |
| AGATTCTTGTGTGAAACATG+TGG | 0.668573 | 4_3:-55462700 | Msa0648920:CDS |
| AGAGAATACAAATGTGACTG+TGG | 0.675625 | 4_3:-55462394 | Msa0648920:CDS |
| TCTAAACGTAGACATGTGCA+AGG | 0.685474 | 4_3:-55460773 | Msa0648920:CDS |
| CTTAGCAGAAGAAACAGCAA+GGG | 0.690135 | 4_3:-55461563 | Msa0648920:CDS |
| AATCTACAGCTACATAGACG+TGG | 0.700320 | 4_3:-55462655 | Msa0648920:CDS |
| GTGCAAGGTGAAGAGAATGG+AGG | 0.708411 | 4_3:-55460758 | Msa0648920:CDS |
| GTGCCCTTGAAGGATCATGG+TGG | 0.739339 | 4_3:+55462548 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCAGATATATAATTTTTTT+TGG | + | chr4_3:55461174-55461193 | None:intergenic | 10.0% |
| !! | AAAATTATATATCTGATATA+AGG | - | chr4_3:55461177-55461196 | Msa0648920:CDS | 10.0% |
| !! | GTTTATATATAAATATTAGA+AGG | + | chr4_3:55461703-55461722 | None:intergenic | 10.0% |
| !!! | TTAATATTTGTGAATATTTT+TGG | - | chr4_3:55461758-55461777 | Msa0648920:intron | 10.0% |
| !!! | ATCAGATATATAATTTTTTT+TGG | + | chr4_3:55461174-55461193 | None:intergenic | 10.0% |
| !! | AAAATTATATATCTGATATA+AGG | - | chr4_3:55461177-55461196 | Msa0648920:CDS | 10.0% |
| !! | GTTTATATATAAATATTAGA+AGG | + | chr4_3:55461703-55461722 | None:intergenic | 10.0% |
| !!! | TTAATATTTGTGAATATTTT+TGG | - | chr4_3:55461758-55461777 | Msa0648920:intron | 10.0% |
| !! | TTAGTTTAAACAAATGATTA+AGG | - | chr4_3:55461289-55461308 | Msa0648920:CDS | 15.0% |
| !! | AAACATTAATGTTAATGTTA+AGG | - | chr4_3:55462284-55462303 | Msa0648920:intron | 15.0% |
| !! | TTAGTTTAAACAAATGATTA+AGG | - | chr4_3:55461289-55461308 | Msa0648920:CDS | 15.0% |
| !! | AAACATTAATGTTAATGTTA+AGG | - | chr4_3:55462284-55462303 | Msa0648920:intron | 15.0% |
| !!! | TATGTTTTTTTTTGCCTATT+TGG | - | chr4_3:55461234-55461253 | Msa0648920:CDS | 20.0% |
| !! | TTTGAAAATTGAAGGAAAAT+GGG | + | chr4_3:55461962-55461981 | None:intergenic | 20.0% |
| !! | TAATAACTATCAGCTAAATT+GGG | - | chr4_3:55462188-55462207 | Msa0648920:intron | 20.0% |
| !! | TAGTACTAGTAATTAATTCT+TGG | + | chr4_3:55462245-55462264 | None:intergenic | 20.0% |
| !!! | TATGTTTTTTTTTGCCTATT+TGG | - | chr4_3:55461234-55461253 | Msa0648920:CDS | 20.0% |
| !! | TTTGAAAATTGAAGGAAAAT+GGG | + | chr4_3:55461962-55461981 | None:intergenic | 20.0% |
| !! | TAATAACTATCAGCTAAATT+GGG | - | chr4_3:55462188-55462207 | Msa0648920:intron | 20.0% |
| !! | TAGTACTAGTAATTAATTCT+TGG | + | chr4_3:55462245-55462264 | None:intergenic | 20.0% |
| ! | TAATCGGTATATCTGATATA+AGG | - | chr4_3:55461091-55461110 | Msa0648920:CDS | 25.0% |
| ! | ATAAGGATCAAGTTTAAAAG+TGG | - | chr4_3:55461194-55461213 | Msa0648920:CDS | 25.0% |
| ! | TATTCTCAAAAAAGCCAAAT+AGG | + | chr4_3:55461251-55461270 | None:intergenic | 25.0% |
| ! | TTGAGAATAAAAAGTGAATG+AGG | - | chr4_3:55461262-55461281 | Msa0648920:CDS | 25.0% |
| ! | AATTATATACATAGTGAGTG+AGG | + | chr4_3:55461415-55461434 | None:intergenic | 25.0% |
| !!! | TTTATTTTCACACTAGTTTG+AGG | - | chr4_3:55461450-55461469 | Msa0648920:CDS | 25.0% |
| ! | GTTAACCAACTACTATATAT+AGG | - | chr4_3:55461475-55461494 | Msa0648920:CDS | 25.0% |
| !! | AACTCATTAACCAAATCTTT+TGG | - | chr4_3:55461672-55461691 | Msa0648920:intron | 25.0% |
| ! | TAAACAACAGCTCATTATTA+AGG | - | chr4_3:55461869-55461888 | Msa0648920:intron | 25.0% |
| ! | AAACAACAGCTCATTATTAA+GGG | - | chr4_3:55461870-55461889 | Msa0648920:intron | 25.0% |
| ! | GTTTGAAAATTGAAGGAAAA+TGG | + | chr4_3:55461963-55461982 | None:intergenic | 25.0% |
| !!! | GAAATTGGTTTGAAAATTGA+AGG | + | chr4_3:55461970-55461989 | None:intergenic | 25.0% |
| !!! | AGAATTTTGATTCATCCAAA+GGG | + | chr4_3:55462037-55462056 | None:intergenic | 25.0% |
| ! | TCATCAAGAGAAATTATGTA+TGG | - | chr4_3:55462138-55462157 | Msa0648920:intron | 25.0% |
| ! | TGATAGTTATTAGAATATGG+TGG | + | chr4_3:55462180-55462199 | None:intergenic | 25.0% |
| ! | AGCTGATAGTTATTAGAATA+TGG | + | chr4_3:55462183-55462202 | None:intergenic | 25.0% |
| ! | CTAATAACTATCAGCTAAAT+TGG | - | chr4_3:55462187-55462206 | Msa0648920:intron | 25.0% |
| ! | TTAACATTAATGTTTCCTAG+TGG | + | chr4_3:55462279-55462298 | None:intergenic | 25.0% |
| ! | TATACAAGGAAGAAATTTGT+TGG | + | chr4_3:55462332-55462351 | None:intergenic | 25.0% |
| ! | TAATCGGTATATCTGATATA+AGG | - | chr4_3:55461091-55461110 | Msa0648920:CDS | 25.0% |
| ! | ATAAGGATCAAGTTTAAAAG+TGG | - | chr4_3:55461194-55461213 | Msa0648920:CDS | 25.0% |
| ! | TATTCTCAAAAAAGCCAAAT+AGG | + | chr4_3:55461251-55461270 | None:intergenic | 25.0% |
| ! | TTGAGAATAAAAAGTGAATG+AGG | - | chr4_3:55461262-55461281 | Msa0648920:CDS | 25.0% |
| ! | AATTATATACATAGTGAGTG+AGG | + | chr4_3:55461415-55461434 | None:intergenic | 25.0% |
| !!! | TTTATTTTCACACTAGTTTG+AGG | - | chr4_3:55461450-55461469 | Msa0648920:CDS | 25.0% |
| ! | GTTAACCAACTACTATATAT+AGG | - | chr4_3:55461475-55461494 | Msa0648920:CDS | 25.0% |
| !! | AACTCATTAACCAAATCTTT+TGG | - | chr4_3:55461672-55461691 | Msa0648920:intron | 25.0% |
| ! | TAAACAACAGCTCATTATTA+AGG | - | chr4_3:55461869-55461888 | Msa0648920:intron | 25.0% |
| ! | AAACAACAGCTCATTATTAA+GGG | - | chr4_3:55461870-55461889 | Msa0648920:intron | 25.0% |
| ! | GTTTGAAAATTGAAGGAAAA+TGG | + | chr4_3:55461963-55461982 | None:intergenic | 25.0% |
| !!! | GAAATTGGTTTGAAAATTGA+AGG | + | chr4_3:55461970-55461989 | None:intergenic | 25.0% |
| !!! | AGAATTTTGATTCATCCAAA+GGG | + | chr4_3:55462037-55462056 | None:intergenic | 25.0% |
| ! | TCATCAAGAGAAATTATGTA+TGG | - | chr4_3:55462138-55462157 | Msa0648920:intron | 25.0% |
| ! | TGATAGTTATTAGAATATGG+TGG | + | chr4_3:55462180-55462199 | None:intergenic | 25.0% |
| ! | AGCTGATAGTTATTAGAATA+TGG | + | chr4_3:55462183-55462202 | None:intergenic | 25.0% |
| ! | CTAATAACTATCAGCTAAAT+TGG | - | chr4_3:55462187-55462206 | Msa0648920:intron | 25.0% |
| ! | TTAACATTAATGTTTCCTAG+TGG | + | chr4_3:55462279-55462298 | None:intergenic | 25.0% |
| ! | TATACAAGGAAGAAATTTGT+TGG | + | chr4_3:55462332-55462351 | None:intergenic | 25.0% |
| TGATCAGAATAACATAGAGA+TGG | + | chr4_3:55461063-55461082 | None:intergenic | 30.0% | |
| GATCAAGTTTAAAAGTGGTT+AGG | - | chr4_3:55461199-55461218 | Msa0648920:CDS | 30.0% | |
| ACAAGCCTATATATAGTAGT+TGG | + | chr4_3:55461483-55461502 | None:intergenic | 30.0% | |
| AGCTAGACAAAAGTCAAAAT+GGG | + | chr4_3:55461546-55461565 | None:intergenic | 30.0% | |
| AACAACAGCTCATTATTAAG+GGG | - | chr4_3:55461871-55461890 | Msa0648920:intron | 30.0% | |
| TCATTATTAAGGGGTAACAT+TGG | - | chr4_3:55461880-55461899 | Msa0648920:intron | 30.0% | |
| TGGTAATTACACCAACATAA+TGG | - | chr4_3:55461900-55461919 | Msa0648920:intron | 30.0% | |
| GGTAATTACACCAACATAAT+GGG | - | chr4_3:55461901-55461920 | Msa0648920:intron | 30.0% | |
| AAAATTGAAGGAAAATGGGT+TGG | + | chr4_3:55461958-55461977 | None:intergenic | 30.0% | |
| !!! | GAGAATTTTGATTCATCCAA+AGG | + | chr4_3:55462038-55462057 | None:intergenic | 30.0% |
| ATGCAAACTAGAATTTCCAT+TGG | + | chr4_3:55462094-55462113 | None:intergenic | 30.0% | |
| TCAAGAGAAATTATGTATGG+TGG | - | chr4_3:55462141-55462160 | Msa0648920:intron | 30.0% | |
| ! | AGTTATTAGAATATGGTGGA+GGG | + | chr4_3:55462176-55462195 | None:intergenic | 30.0% |
| TAGTTATTAGAATATGGTGG+AGG | + | chr4_3:55462177-55462196 | None:intergenic | 30.0% | |
| ! | TATCAGCTAAATTGGGTTTT+TGG | - | chr4_3:55462195-55462214 | Msa0648920:intron | 30.0% |
| AAGATGTTTGATGTGGTATT+TGG | + | chr4_3:55462365-55462384 | None:intergenic | 30.0% | |
| TTACAAAAAGCTGCTCAAAT+TGG | - | chr4_3:55462411-55462430 | Msa0648920:CDS | 30.0% | |
| ATTTCAAACCTAAACTTCCA+AGG | + | chr4_3:55462461-55462480 | None:intergenic | 30.0% | |
| ACTAATGATGTGAACAAGTT+TGG | - | chr4_3:55462498-55462517 | Msa0648920:CDS | 30.0% | |
| ! | AGTTCATTACTCATTAGTCT+TGG | - | chr4_3:55462546-55462565 | Msa0648920:CDS | 30.0% |
| TGATCAGAATAACATAGAGA+TGG | + | chr4_3:55461063-55461082 | None:intergenic | 30.0% | |
| GATCAAGTTTAAAAGTGGTT+AGG | - | chr4_3:55461199-55461218 | Msa0648920:CDS | 30.0% | |
| ACAAGCCTATATATAGTAGT+TGG | + | chr4_3:55461483-55461502 | None:intergenic | 30.0% | |
| AGCTAGACAAAAGTCAAAAT+GGG | + | chr4_3:55461546-55461565 | None:intergenic | 30.0% | |
| AACAACAGCTCATTATTAAG+GGG | - | chr4_3:55461871-55461890 | Msa0648920:intron | 30.0% | |
| TCATTATTAAGGGGTAACAT+TGG | - | chr4_3:55461880-55461899 | Msa0648920:intron | 30.0% | |
| TGGTAATTACACCAACATAA+TGG | - | chr4_3:55461900-55461919 | Msa0648920:intron | 30.0% | |
| GGTAATTACACCAACATAAT+GGG | - | chr4_3:55461901-55461920 | Msa0648920:intron | 30.0% | |
| AAAATTGAAGGAAAATGGGT+TGG | + | chr4_3:55461958-55461977 | None:intergenic | 30.0% | |
| !!! | GAGAATTTTGATTCATCCAA+AGG | + | chr4_3:55462038-55462057 | None:intergenic | 30.0% |
| ATGCAAACTAGAATTTCCAT+TGG | + | chr4_3:55462094-55462113 | None:intergenic | 30.0% | |
| TCAAGAGAAATTATGTATGG+TGG | - | chr4_3:55462141-55462160 | Msa0648920:intron | 30.0% | |
| ! | AGTTATTAGAATATGGTGGA+GGG | + | chr4_3:55462176-55462195 | None:intergenic | 30.0% |
| TAGTTATTAGAATATGGTGG+AGG | + | chr4_3:55462177-55462196 | None:intergenic | 30.0% | |
| ! | TATCAGCTAAATTGGGTTTT+TGG | - | chr4_3:55462195-55462214 | Msa0648920:intron | 30.0% |
| AAGATGTTTGATGTGGTATT+TGG | + | chr4_3:55462365-55462384 | None:intergenic | 30.0% | |
| TTACAAAAAGCTGCTCAAAT+TGG | - | chr4_3:55462411-55462430 | Msa0648920:CDS | 30.0% | |
| ATTTCAAACCTAAACTTCCA+AGG | + | chr4_3:55462461-55462480 | None:intergenic | 30.0% | |
| ACTAATGATGTGAACAAGTT+TGG | - | chr4_3:55462498-55462517 | Msa0648920:CDS | 30.0% | |
| ! | AGTTCATTACTCATTAGTCT+TGG | - | chr4_3:55462546-55462565 | Msa0648920:CDS | 30.0% |
| AGATTCTTGTGTGAAACATG+TGG | - | chr4_3:55460691-55460710 | Msa0648920:CDS | 35.0% | |
| GATTCTTGTGTGAAACATGT+GGG | - | chr4_3:55460692-55460711 | Msa0648920:CDS | 35.0% | |
| ! | AAGCACTTTTGTAGAAAGCA+TGG | - | chr4_3:55460889-55460908 | Msa0648920:CDS | 35.0% |
| AAAGCTCACTCAAAAACATG+TGG | - | chr4_3:55460970-55460989 | Msa0648920:CDS | 35.0% | |
| AGAGAATACAAATGTGACTG+TGG | - | chr4_3:55460997-55461016 | Msa0648920:CDS | 35.0% | |
| ! | ACTGTGGAACTATCTTTTCA+AGG | - | chr4_3:55461013-55461032 | Msa0648920:CDS | 35.0% |
| TAACATAGAGATGGATGGAT+AGG | + | chr4_3:55461054-55461073 | None:intergenic | 35.0% | |
| CAGAATAACATAGAGATGGA+TGG | + | chr4_3:55461059-55461078 | None:intergenic | 35.0% | |
| TCTGATCACATCGTTGTAAT+CGG | - | chr4_3:55461075-55461094 | Msa0648920:CDS | 35.0% | |
| TTAGGGCAAAAACAGCAAAA+AGG | + | chr4_3:55461355-55461374 | None:intergenic | 35.0% | |
| !! | CCATGAACTTTTGTCGTTTA+GGG | + | chr4_3:55461372-55461391 | None:intergenic | 35.0% |
| !! | ACCATGAACTTTTGTCGTTT+AGG | + | chr4_3:55461373-55461392 | None:intergenic | 35.0% |
| AACGACAAAAGTTCATGGTT+TGG | - | chr4_3:55461374-55461393 | Msa0648920:CDS | 35.0% | |
| AAAGTCAAAATGGGAGTAAC+CGG | + | chr4_3:55461537-55461556 | None:intergenic | 35.0% | |
| GAGCTAGACAAAAGTCAAAA+TGG | + | chr4_3:55461547-55461566 | None:intergenic | 35.0% | |
| TTAAGACCAGAGTTCAAATG+CGG | + | chr4_3:55461648-55461667 | None:intergenic | 35.0% | |
| GAAGGAACAACCAAAAGATT+TGG | + | chr4_3:55461685-55461704 | None:intergenic | 35.0% | |
| !!! | GTGAATATTTTTGGTTGAGC+AGG | - | chr4_3:55461767-55461786 | Msa0648920:intron | 35.0% |
| AGATGTTGTTCCCATTATGT+TGG | + | chr4_3:55461914-55461933 | None:intergenic | 35.0% | |
| ! | GGGTTGGCATATTGTTATTA+GGG | + | chr4_3:55461942-55461961 | None:intergenic | 35.0% |
| !! | TGGGTTGGCATATTGTTATT+AGG | + | chr4_3:55461943-55461962 | None:intergenic | 35.0% |
| TGATGATCAGGAGTTGAAAT+TGG | + | chr4_3:55461985-55462004 | None:intergenic | 35.0% | |
| !! | TTGGTTGATTGATGATGATC+AGG | + | chr4_3:55461997-55462016 | None:intergenic | 35.0% |
| CAATCAACCAATCAAACTAG+AGG | - | chr4_3:55462006-55462025 | Msa0648920:intron | 35.0% | |
| GTGGTTATCATTGTTTCATG+AGG | + | chr4_3:55462069-55462088 | None:intergenic | 35.0% | |
| CAAACTAGAATTTCCATTGG+TGG | + | chr4_3:55462091-55462110 | None:intergenic | 35.0% | |
| TTTGCTGAAGATGTTTGATG+TGG | + | chr4_3:55462372-55462391 | None:intergenic | 35.0% | |
| ! | AAGGAATGAAGTATCACTTG+AGG | + | chr4_3:55462442-55462461 | None:intergenic | 35.0% |
| TCAAGTGATACTTCATTCCT+TGG | - | chr4_3:55462441-55462460 | Msa0648920:CDS | 35.0% | |
| ACTTCATTCCTTGGAAGTTT+AGG | - | chr4_3:55462450-55462469 | Msa0648920:CDS | 35.0% | |
| AATGATGTGAACAAGTTTGG+TGG | - | chr4_3:55462501-55462520 | Msa0648920:CDS | 35.0% | |
| AGATTCTTGTGTGAAACATG+TGG | - | chr4_3:55460691-55460710 | Msa0648920:CDS | 35.0% | |
| GATTCTTGTGTGAAACATGT+GGG | - | chr4_3:55460692-55460711 | Msa0648920:CDS | 35.0% | |
| ! | AAGCACTTTTGTAGAAAGCA+TGG | - | chr4_3:55460889-55460908 | Msa0648920:CDS | 35.0% |
| AAAGCTCACTCAAAAACATG+TGG | - | chr4_3:55460970-55460989 | Msa0648920:CDS | 35.0% | |
| AGAGAATACAAATGTGACTG+TGG | - | chr4_3:55460997-55461016 | Msa0648920:CDS | 35.0% | |
| ! | ACTGTGGAACTATCTTTTCA+AGG | - | chr4_3:55461013-55461032 | Msa0648920:CDS | 35.0% |
| TAACATAGAGATGGATGGAT+AGG | + | chr4_3:55461054-55461073 | None:intergenic | 35.0% | |
| CAGAATAACATAGAGATGGA+TGG | + | chr4_3:55461059-55461078 | None:intergenic | 35.0% | |
| TCTGATCACATCGTTGTAAT+CGG | - | chr4_3:55461075-55461094 | Msa0648920:CDS | 35.0% | |
| TTAGGGCAAAAACAGCAAAA+AGG | + | chr4_3:55461355-55461374 | None:intergenic | 35.0% | |
| !! | CCATGAACTTTTGTCGTTTA+GGG | + | chr4_3:55461372-55461391 | None:intergenic | 35.0% |
| !! | ACCATGAACTTTTGTCGTTT+AGG | + | chr4_3:55461373-55461392 | None:intergenic | 35.0% |
| AACGACAAAAGTTCATGGTT+TGG | - | chr4_3:55461374-55461393 | Msa0648920:CDS | 35.0% | |
| AAAGTCAAAATGGGAGTAAC+CGG | + | chr4_3:55461537-55461556 | None:intergenic | 35.0% | |
| GAGCTAGACAAAAGTCAAAA+TGG | + | chr4_3:55461547-55461566 | None:intergenic | 35.0% | |
| TTAAGACCAGAGTTCAAATG+CGG | + | chr4_3:55461648-55461667 | None:intergenic | 35.0% | |
| GAAGGAACAACCAAAAGATT+TGG | + | chr4_3:55461685-55461704 | None:intergenic | 35.0% | |
| !!! | GTGAATATTTTTGGTTGAGC+AGG | - | chr4_3:55461767-55461786 | Msa0648920:intron | 35.0% |
| AGATGTTGTTCCCATTATGT+TGG | + | chr4_3:55461914-55461933 | None:intergenic | 35.0% | |
| ! | GGGTTGGCATATTGTTATTA+GGG | + | chr4_3:55461942-55461961 | None:intergenic | 35.0% |
| !! | TGGGTTGGCATATTGTTATT+AGG | + | chr4_3:55461943-55461962 | None:intergenic | 35.0% |
| TGATGATCAGGAGTTGAAAT+TGG | + | chr4_3:55461985-55462004 | None:intergenic | 35.0% | |
| !! | TTGGTTGATTGATGATGATC+AGG | + | chr4_3:55461997-55462016 | None:intergenic | 35.0% |
| CAATCAACCAATCAAACTAG+AGG | - | chr4_3:55462006-55462025 | Msa0648920:intron | 35.0% | |
| GTGGTTATCATTGTTTCATG+AGG | + | chr4_3:55462069-55462088 | None:intergenic | 35.0% | |
| CAAACTAGAATTTCCATTGG+TGG | + | chr4_3:55462091-55462110 | None:intergenic | 35.0% | |
| TTTGCTGAAGATGTTTGATG+TGG | + | chr4_3:55462372-55462391 | None:intergenic | 35.0% | |
| ! | AAGGAATGAAGTATCACTTG+AGG | + | chr4_3:55462442-55462461 | None:intergenic | 35.0% |
| TCAAGTGATACTTCATTCCT+TGG | - | chr4_3:55462441-55462460 | Msa0648920:CDS | 35.0% | |
| ACTTCATTCCTTGGAAGTTT+AGG | - | chr4_3:55462450-55462469 | Msa0648920:CDS | 35.0% | |
| AATGATGTGAACAAGTTTGG+TGG | - | chr4_3:55462501-55462520 | Msa0648920:CDS | 35.0% | |
| TTGTGTGAAACATGTGGGAA+AGG | - | chr4_3:55460697-55460716 | Msa0648920:CDS | 40.0% | |
| AATCTACAGCTACATAGACG+TGG | - | chr4_3:55460736-55460755 | Msa0648920:CDS | 40.0% | |
| ! | GAAAGCATGGTGAAAAGAAG+TGG | - | chr4_3:55460902-55460921 | Msa0648920:CDS | 40.0% |
| GTTATGCTGTTCAGTCAGAT+TGG | - | chr4_3:55460947-55460966 | Msa0648920:CDS | 40.0% | |
| TAGAGATGGATGGATAGGTT+AGG | + | chr4_3:55461049-55461068 | None:intergenic | 40.0% | |
| ! | GTTGCTCGAGAAATTAGTCT+CGG | - | chr4_3:55461120-55461139 | Msa0648920:CDS | 40.0% |
| CCCTAAACGACAAAAGTTCA+TGG | - | chr4_3:55461369-55461388 | Msa0648920:CDS | 40.0% | |
| TTATGCCGTACTCATGTTTC+CGG | - | chr4_3:55461515-55461534 | Msa0648920:CDS | 40.0% | |
| AGTAACCGGAAACATGAGTA+CGG | + | chr4_3:55461523-55461542 | None:intergenic | 40.0% | |
| TAAGACCAGAGTTCAAATGC+GGG | + | chr4_3:55461647-55461666 | None:intergenic | 40.0% | |
| ! | TTCTGCTAAGGCATCACAAA+AGG | + | chr4_3:55461818-55461837 | None:intergenic | 40.0% |
| CTTAGCAGAAGAAACAGCAA+GGG | - | chr4_3:55461828-55461847 | Msa0648920:intron | 40.0% | |
| ! | GGATAGTCCTCTAGTTTGAT+TGG | + | chr4_3:55462016-55462035 | None:intergenic | 40.0% |
| AAACTAGAGGACTATCCCTT+TGG | - | chr4_3:55462019-55462038 | Msa0648920:intron | 40.0% | |
| ACAATGATAACCACCACCAA+TGG | - | chr4_3:55462075-55462094 | Msa0648920:intron | 40.0% | |
| ACTAGAATTTCCATTGGTGG+TGG | + | chr4_3:55462088-55462107 | None:intergenic | 40.0% | |
| ACTACAACTTCACTTCCACT+AGG | - | chr4_3:55462261-55462280 | Msa0648920:intron | 40.0% | |
| !! | TTGGTGTTGTGAGCTATACA+AGG | + | chr4_3:55462346-55462365 | None:intergenic | 40.0% |
| !! | TTTGGTGGTACTGGTATGTA+TGG | - | chr4_3:55462516-55462535 | Msa0648920:CDS | 40.0% |
| !! | ACTCATTAGTCTTGGCAATG+AGG | - | chr4_3:55462554-55462573 | Msa0648920:CDS | 40.0% |
| GCACATGTCTACGTTTAGAA+GGG | + | chr4_3:55462617-55462636 | None:intergenic | 40.0% | |
| TGCACATGTCTACGTTTAGA+AGG | + | chr4_3:55462618-55462637 | None:intergenic | 40.0% | |
| TCTAAACGTAGACATGTGCA+AGG | - | chr4_3:55462618-55462637 | Msa0648920:CDS | 40.0% | |
| !! | ACTAGGGATTTTCTTGGTGT+TGG | - | chr4_3:55462666-55462685 | Msa0648920:CDS | 40.0% |
| GATTGATGAAGGGTGACAAA+TGG | + | chr4_3:55462700-55462719 | None:intergenic | 40.0% | |
| TGTCACCCTTCATCAATCAA+CGG | - | chr4_3:55462702-55462721 | Msa0648920:CDS | 40.0% | |
| ! | TCCAACCGTTGATTGATGAA+GGG | + | chr4_3:55462710-55462729 | None:intergenic | 40.0% |
| ! | ATCCAACCGTTGATTGATGA+AGG | + | chr4_3:55462711-55462730 | None:intergenic | 40.0% |
| TTGTGTGAAACATGTGGGAA+AGG | - | chr4_3:55460697-55460716 | Msa0648920:CDS | 40.0% | |
| AATCTACAGCTACATAGACG+TGG | - | chr4_3:55460736-55460755 | Msa0648920:CDS | 40.0% | |
| ! | GAAAGCATGGTGAAAAGAAG+TGG | - | chr4_3:55460902-55460921 | Msa0648920:CDS | 40.0% |
| GTTATGCTGTTCAGTCAGAT+TGG | - | chr4_3:55460947-55460966 | Msa0648920:CDS | 40.0% | |
| TAGAGATGGATGGATAGGTT+AGG | + | chr4_3:55461049-55461068 | None:intergenic | 40.0% | |
| ! | GTTGCTCGAGAAATTAGTCT+CGG | - | chr4_3:55461120-55461139 | Msa0648920:CDS | 40.0% |
| CCCTAAACGACAAAAGTTCA+TGG | - | chr4_3:55461369-55461388 | Msa0648920:CDS | 40.0% | |
| TTATGCCGTACTCATGTTTC+CGG | - | chr4_3:55461515-55461534 | Msa0648920:CDS | 40.0% | |
| AGTAACCGGAAACATGAGTA+CGG | + | chr4_3:55461523-55461542 | None:intergenic | 40.0% | |
| TAAGACCAGAGTTCAAATGC+GGG | + | chr4_3:55461647-55461666 | None:intergenic | 40.0% | |
| ! | TTCTGCTAAGGCATCACAAA+AGG | + | chr4_3:55461818-55461837 | None:intergenic | 40.0% |
| CTTAGCAGAAGAAACAGCAA+GGG | - | chr4_3:55461828-55461847 | Msa0648920:intron | 40.0% | |
| ! | GGATAGTCCTCTAGTTTGAT+TGG | + | chr4_3:55462016-55462035 | None:intergenic | 40.0% |
| AAACTAGAGGACTATCCCTT+TGG | - | chr4_3:55462019-55462038 | Msa0648920:intron | 40.0% | |
| ACAATGATAACCACCACCAA+TGG | - | chr4_3:55462075-55462094 | Msa0648920:intron | 40.0% | |
| ACTAGAATTTCCATTGGTGG+TGG | + | chr4_3:55462088-55462107 | None:intergenic | 40.0% | |
| ACTACAACTTCACTTCCACT+AGG | - | chr4_3:55462261-55462280 | Msa0648920:intron | 40.0% | |
| !! | TTGGTGTTGTGAGCTATACA+AGG | + | chr4_3:55462346-55462365 | None:intergenic | 40.0% |
| !! | TTTGGTGGTACTGGTATGTA+TGG | - | chr4_3:55462516-55462535 | Msa0648920:CDS | 40.0% |
| !! | ACTCATTAGTCTTGGCAATG+AGG | - | chr4_3:55462554-55462573 | Msa0648920:CDS | 40.0% |
| GCACATGTCTACGTTTAGAA+GGG | + | chr4_3:55462617-55462636 | None:intergenic | 40.0% | |
| TGCACATGTCTACGTTTAGA+AGG | + | chr4_3:55462618-55462637 | None:intergenic | 40.0% | |
| TCTAAACGTAGACATGTGCA+AGG | - | chr4_3:55462618-55462637 | Msa0648920:CDS | 40.0% | |
| !! | ACTAGGGATTTTCTTGGTGT+TGG | - | chr4_3:55462666-55462685 | Msa0648920:CDS | 40.0% |
| GATTGATGAAGGGTGACAAA+TGG | + | chr4_3:55462700-55462719 | None:intergenic | 40.0% | |
| TGTCACCCTTCATCAATCAA+CGG | - | chr4_3:55462702-55462721 | Msa0648920:CDS | 40.0% | |
| ! | TCCAACCGTTGATTGATGAA+GGG | + | chr4_3:55462710-55462729 | None:intergenic | 40.0% |
| ! | ATCCAACCGTTGATTGATGA+AGG | + | chr4_3:55462711-55462730 | None:intergenic | 40.0% |
| GACGTGGACATAATCTTCCA+TGG | - | chr4_3:55460752-55460771 | Msa0648920:CDS | 45.0% | |
| GTTCTCTGCTTAAGCTTCCA+TGG | + | chr4_3:55460772-55460791 | None:intergenic | 45.0% | |
| !! | TGGTGGACACAAGTTTTCTC+TGG | + | chr4_3:55460829-55460848 | None:intergenic | 45.0% |
| TGTCCACCATGATCCTTCAA+GGG | - | chr4_3:55460840-55460859 | Msa0648920:CDS | 45.0% | |
| TTAGTCTCGGCAGTTGTTTG+CGG | - | chr4_3:55461133-55461152 | Msa0648920:CDS | 45.0% | |
| GGAAACATGAGTACGGCATA+AGG | + | chr4_3:55461516-55461535 | None:intergenic | 45.0% | |
| AACTGTCTCGTTCTCGAGAA+TGG | - | chr4_3:55461581-55461600 | Msa0648920:CDS | 45.0% | |
| AAGACCAGAGTTCAAATGCG+GGG | + | chr4_3:55461646-55461665 | None:intergenic | 45.0% | |
| !! | CCTTGCTGTTTCTTCTGCTA+AGG | + | chr4_3:55461830-55461849 | None:intergenic | 45.0% |
| CCTTAGCAGAAGAAACAGCA+AGG | - | chr4_3:55461827-55461846 | Msa0648920:intron | 45.0% | |
| ! | GTGAACAAGTTTGGTGGTAC+TGG | - | chr4_3:55462507-55462526 | Msa0648920:CDS | 45.0% |
| CATGTGCAAGGTGAAGAGAA+TGG | - | chr4_3:55462630-55462649 | Msa0648920:CDS | 45.0% | |
| ! | GGGCAAACTAGGGATTTTCT+TGG | - | chr4_3:55462660-55462679 | Msa0648920:CDS | 45.0% |
| ACCCTTCATCAATCAACGGT+TGG | - | chr4_3:55462706-55462725 | Msa0648920:CDS | 45.0% | |
| GACGTGGACATAATCTTCCA+TGG | - | chr4_3:55460752-55460771 | Msa0648920:CDS | 45.0% | |
| GTTCTCTGCTTAAGCTTCCA+TGG | + | chr4_3:55460772-55460791 | None:intergenic | 45.0% | |
| !! | TGGTGGACACAAGTTTTCTC+TGG | + | chr4_3:55460829-55460848 | None:intergenic | 45.0% |
| TGTCCACCATGATCCTTCAA+GGG | - | chr4_3:55460840-55460859 | Msa0648920:CDS | 45.0% | |
| TTAGTCTCGGCAGTTGTTTG+CGG | - | chr4_3:55461133-55461152 | Msa0648920:CDS | 45.0% | |
| GGAAACATGAGTACGGCATA+AGG | + | chr4_3:55461516-55461535 | None:intergenic | 45.0% | |
| AACTGTCTCGTTCTCGAGAA+TGG | - | chr4_3:55461581-55461600 | Msa0648920:CDS | 45.0% | |
| AAGACCAGAGTTCAAATGCG+GGG | + | chr4_3:55461646-55461665 | None:intergenic | 45.0% | |
| !! | CCTTGCTGTTTCTTCTGCTA+AGG | + | chr4_3:55461830-55461849 | None:intergenic | 45.0% |
| CCTTAGCAGAAGAAACAGCA+AGG | - | chr4_3:55461827-55461846 | Msa0648920:intron | 45.0% | |
| ! | GTGAACAAGTTTGGTGGTAC+TGG | - | chr4_3:55462507-55462526 | Msa0648920:CDS | 45.0% |
| CATGTGCAAGGTGAAGAGAA+TGG | - | chr4_3:55462630-55462649 | Msa0648920:CDS | 45.0% | |
| ! | GGGCAAACTAGGGATTTTCT+TGG | - | chr4_3:55462660-55462679 | Msa0648920:CDS | 45.0% |
| ACCCTTCATCAATCAACGGT+TGG | - | chr4_3:55462706-55462725 | Msa0648920:CDS | 45.0% | |
| GTGTCCACCATGATCCTTCA+AGG | - | chr4_3:55460839-55460858 | Msa0648920:CDS | 50.0% | |
| CAAGTGCCCTTGAAGGATCA+TGG | + | chr4_3:55460849-55460868 | None:intergenic | 50.0% | |
| !! | CATGATCCTTCAAGGGCACT+TGG | - | chr4_3:55460847-55460866 | Msa0648920:CDS | 50.0% |
| AAGTCACCAAGTGCCCTTGA+AGG | + | chr4_3:55460856-55460875 | None:intergenic | 50.0% | |
| ! | AGGGCACTTGGTGACTTAAC+TGG | - | chr4_3:55460859-55460878 | Msa0648920:CDS | 50.0% |
| ! | GGGCACTTGGTGACTTAACT+GGG | - | chr4_3:55460860-55460879 | Msa0648920:CDS | 50.0% |
| GTGCAAGGTGAAGAGAATGG+AGG | - | chr4_3:55462633-55462652 | Msa0648920:CDS | 50.0% | |
| CAAGGTGAAGAGAATGGAGG+AGG | - | chr4_3:55462636-55462655 | Msa0648920:CDS | 50.0% | |
| GTGAAGAGAATGGAGGAGGA+GGG | - | chr4_3:55462640-55462659 | Msa0648920:CDS | 50.0% | |
| GTGTCCACCATGATCCTTCA+AGG | - | chr4_3:55460839-55460858 | Msa0648920:CDS | 50.0% | |
| CAAGTGCCCTTGAAGGATCA+TGG | + | chr4_3:55460849-55460868 | None:intergenic | 50.0% | |
| !! | CATGATCCTTCAAGGGCACT+TGG | - | chr4_3:55460847-55460866 | Msa0648920:CDS | 50.0% |
| AAGTCACCAAGTGCCCTTGA+AGG | + | chr4_3:55460856-55460875 | None:intergenic | 50.0% | |
| ! | AGGGCACTTGGTGACTTAAC+TGG | - | chr4_3:55460859-55460878 | Msa0648920:CDS | 50.0% |
| ! | GGGCACTTGGTGACTTAACT+GGG | - | chr4_3:55460860-55460879 | Msa0648920:CDS | 50.0% |
| GTGCAAGGTGAAGAGAATGG+AGG | - | chr4_3:55462633-55462652 | Msa0648920:CDS | 50.0% | |
| CAAGGTGAAGAGAATGGAGG+AGG | - | chr4_3:55462636-55462655 | Msa0648920:CDS | 50.0% | |
| GTGAAGAGAATGGAGGAGGA+GGG | - | chr4_3:55462640-55462659 | Msa0648920:CDS | 50.0% | |
| GTGCCCTTGAAGGATCATGG+TGG | + | chr4_3:55460846-55460865 | None:intergenic | 55.0% | |
| CGTTCCCCGCATTTGAACTC+TGG | - | chr4_3:55461639-55461658 | Msa0648920:intron | 55.0% | |
| GGTGAAGAGAATGGAGGAGG+AGG | - | chr4_3:55462639-55462658 | Msa0648920:CDS | 55.0% | |
| ATGGAGGAGGAGGGCAAACT+AGG | - | chr4_3:55462649-55462668 | Msa0648920:CDS | 55.0% | |
| TGGAGGAGGAGGGCAAACTA+GGG | - | chr4_3:55462650-55462669 | Msa0648920:CDS | 55.0% | |
| GTGCCCTTGAAGGATCATGG+TGG | + | chr4_3:55460846-55460865 | None:intergenic | 55.0% | |
| CGTTCCCCGCATTTGAACTC+TGG | - | chr4_3:55461639-55461658 | Msa0648920:intron | 55.0% | |
| GGTGAAGAGAATGGAGGAGG+AGG | - | chr4_3:55462639-55462658 | Msa0648920:CDS | 55.0% | |
| ATGGAGGAGGAGGGCAAACT+AGG | - | chr4_3:55462649-55462668 | Msa0648920:CDS | 55.0% | |
| TGGAGGAGGAGGGCAAACTA+GGG | - | chr4_3:55462650-55462669 | Msa0648920:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 55460679 | 55462734 | 55460679 | ID=Msa0648920;Name=Msa0648920 |
| chr4_3 | mRNA | 55460679 | 55462734 | 55460679 | ID=Msa0648920-mRNA-1;Parent=Msa0648920;Name=Msa0648920-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0|1|1|1|2|0|433 |
| chr4_3 | exon | 55462379 | 55462734 | 55462379 | ID=Msa0648920-mRNA-1:exon:14185;Parent=Msa0648920-mRNA-1 |
| chr4_3 | exon | 55460679 | 55461624 | 55460679 | ID=Msa0648920-mRNA-1:exon:14184;Parent=Msa0648920-mRNA-1 |
| chr4_3 | CDS | 55462379 | 55462734 | 55462379 | ID=Msa0648920-mRNA-1:cds;Parent=Msa0648920-mRNA-1 |
| chr4_3 | CDS | 55460679 | 55461624 | 55460679 | ID=Msa0648920-mRNA-1:cds;Parent=Msa0648920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
