Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555650 | AES69580.2 | 78.261 | 69 | 15 | 0 | 5 | 73 | 125 | 193 | 8.06e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555650 | G7J0R2 | 78.261 | 69 | 15 | 0 | 5 | 73 | 125 | 193 | 3.85e-28 | 114 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0555650 | Msa0913060 | 0.817253 | 3.630058e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555650 | MtrunA17_Chr3g0106081 | 83.871 | 62 | 10 | 0 | 5 | 66 | 125 | 186 | 1.08e-30 | 113 |
| Msa0555650 | MtrunA17_Chr4g0039751 | 59.813 | 107 | 26 | 4 | 88 | 191 | 241 | 333 | 1.26e-27 | 107 |
| Msa0555650 | MtrunA17_Chr3g0106061 | 77.419 | 62 | 14 | 0 | 5 | 66 | 125 | 186 | 2.32e-27 | 104 |
| Msa0555650 | MtrunA17_Chr4g0039741 | 50.962 | 104 | 37 | 3 | 88 | 188 | 237 | 329 | 8.06e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 90 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTTCCACGCTCCGATTTC+TGG | 0.072508 | 4_1:+53692754 | Msa0555650:five_prime_UTR |
| TCTGAATTACTCACAATTAT+TGG | 0.133404 | 4_1:+53692848 | Msa0555650:five_prime_UTR |
| AACTAACGATTTCACGTCTT+TGG | 0.205462 | 4_1:-53692792 | None:intergenic |
| ATGTTCATGTAAAGAAGTTC+TGG | 0.305340 | 4_1:+53694704 | Msa0555650:CDS |
| CTAACATTCTCTCGCAGTTT+CGG | 0.313840 | 4_1:+53692731 | Msa0555650:five_prime_UTR |
| ACATCAATTACTTCAGGTTC+TGG | 0.324054 | 4_1:+53693493 | Msa0555650:CDS |
| AAATGAGCGCACACATGATT+TGG | 0.325724 | 4_1:+53695292 | Msa0555650:three_prime_UTR |
| CCGATTTCTGGATTCACTCT+TGG | 0.329190 | 4_1:+53692766 | Msa0555650:five_prime_UTR |
| GCATTAGCCTTCAAATTTGC+AGG | 0.332095 | 4_1:-53693433 | None:intergenic |
| GCATCATCCTCTCCTGTGTT+TGG | 0.336946 | 4_1:-53695239 | None:intergenic |
| TTTAGCTTATGTTGATTAGA+TGG | 0.355143 | 4_1:+53695586 | Msa0555650:three_prime_UTR |
| TACTTTACTCTCTAACTTTG+AGG | 0.360457 | 4_1:+53695451 | Msa0555650:three_prime_UTR |
| GCATTGACATCAATTACTTC+AGG | 0.364232 | 4_1:+53693487 | Msa0555650:CDS |
| CGCGATCCCTGCAAATTTGA+AGG | 0.392045 | 4_1:+53693426 | Msa0555650:CDS |
| CTAGTGAAGGCATTTGAAAA+TGG | 0.397490 | 4_1:+53695111 | Msa0555650:CDS |
| TTTGAGAAGTTGCGTCAATC+TGG | 0.404467 | 4_1:-53692825 | None:intergenic |
| TTGTGAGCAGGAAACATATC+AGG | 0.425671 | 4_1:+53695083 | Msa0555650:intron |
| CAGAGATACATGTGGATGTT+GGG | 0.430576 | 4_1:-53695159 | None:intergenic |
| GTTACACACAATGTTATAGT+TGG | 0.430775 | 4_1:+53694893 | Msa0555650:CDS |
| AATAATGATGTTCAAAAGCT+TGG | 0.432548 | 4_1:+53693397 | Msa0555650:CDS |
| ACGGTGTTAGTCACCCTTGA+TGG | 0.448925 | 4_1:-53695351 | None:intergenic |
| TTGTTTGACATTGAGATATG+AGG | 0.453186 | 4_1:+53693054 | Msa0555650:five_prime_UTR |
| GGTAATGTTGGAGGTGATGT+TGG | 0.456709 | 4_1:-53694983 | None:intergenic |
| CCAAGAGTGAATCCAGAAAT+CGG | 0.458378 | 4_1:-53692766 | None:intergenic |
| ATGCTATCAGTGAGATTACT+AGG | 0.460900 | 4_1:+53693452 | Msa0555650:CDS |
| TTCTCGTCATGCAACTCAAA+AGG | 0.483330 | 4_1:-53694823 | None:intergenic |
| TTCTAGCATGCATCTATCAC+AGG | 0.484344 | 4_1:+53694925 | Msa0555650:CDS |
| TGGAGGTGATGTTGGAGGCC+TGG | 0.485735 | 4_1:-53694975 | None:intergenic |
| TGATTTGGAGATAAAATTGA+AGG | 0.506665 | 4_1:+53695307 | Msa0555650:three_prime_UTR |
| ACACTTACATAAGGTAATGT+TGG | 0.514069 | 4_1:-53694995 | None:intergenic |
| TCAGAGATACATGTGGATGT+TGG | 0.519579 | 4_1:-53695160 | None:intergenic |
| GGATTGATAATTATTGAGAC+TGG | 0.521946 | 4_1:+53695513 | Msa0555650:three_prime_UTR |
| CATTAGCCTTCAAATTTGCA+GGG | 0.527777 | 4_1:-53693432 | None:intergenic |
| GTGGATAGATTCTGCGGTGA+TGG | 0.533383 | 4_1:-53692873 | None:intergenic |
| CGCTCTCGTCAGAGATCTAG+AGG | 0.534063 | 4_1:+53692934 | Msa0555650:five_prime_UTR |
| ATTCGTTACCTTTACTGCAA+GGG | 0.535566 | 4_1:-53693122 | None:intergenic |
| TGTTCATGTAAAGAAGTTCT+GGG | 0.537179 | 4_1:+53694705 | Msa0555650:CDS |
| CACACAATGTTATAGTTGGA+GGG | 0.539013 | 4_1:+53694897 | Msa0555650:CDS |
| GAGATACGGTGGTCGATGGA+TGG | 0.539708 | 4_1:-53692635 | None:intergenic |
| CAGCTTCAAGCGTGTCAACC+AGG | 0.542801 | 4_1:+53694957 | Msa0555650:CDS |
| GAGAGTGTTGCTTCCATCAA+GGG | 0.543055 | 4_1:+53695338 | Msa0555650:three_prime_UTR |
| TGAGAGTGTTGCTTCCATCA+AGG | 0.546660 | 4_1:+53695337 | Msa0555650:three_prime_UTR |
| TCATGAAGGATCAACCATCT+TGG | 0.547154 | 4_1:-53695136 | None:intergenic |
| TTACATGAACATTCTTTGAG+TGG | 0.548480 | 4_1:-53694693 | None:intergenic |
| GAAAATGCATTGAGGTGCAT+TGG | 0.548667 | 4_1:+53693373 | Msa0555650:CDS |
| TTTCGATATTGCTGCAGAGA+TGG | 0.549127 | 4_1:+53695199 | Msa0555650:three_prime_UTR |
| ATTTGAAAATGGCACCAAGA+TGG | 0.549509 | 4_1:+53695122 | Msa0555650:CDS |
| ACACACAATGTTATAGTTGG+AGG | 0.550581 | 4_1:+53694896 | Msa0555650:CDS |
| GAACTCAATTCCGTGCGCAA+AGG | 0.553715 | 4_1:+53693091 | Msa0555650:CDS |
| CCATGCTATGTTGAGACTTG+TGG | 0.557478 | 4_1:+53695492 | Msa0555650:three_prime_UTR |
| ACATTCTCTCGCAGTTTCGG+CGG | 0.557865 | 4_1:+53692734 | Msa0555650:five_prime_UTR |
| CAGAGAGATACGGTGGTCGA+TGG | 0.561342 | 4_1:-53692639 | None:intergenic |
| AATGTTATAGTTGGAGGGGA+AGG | 0.561367 | 4_1:+53694902 | Msa0555650:CDS |
| AATTCGTTACCTTTACTGCA+AGG | 0.565525 | 4_1:-53693123 | None:intergenic |
| TCAAAGAGCAGAAGAGTCGG+TGG | 0.575058 | 4_1:-53692691 | None:intergenic |
| TGACATCTAGACTATGTATG+AGG | 0.580031 | 4_1:+53695374 | Msa0555650:three_prime_UTR |
| CGAGAACGAAAAGCTTATTG+TGG | 0.582577 | 4_1:-53692892 | None:intergenic |
| ACACAATGTTATAGTTGGAG+GGG | 0.582929 | 4_1:+53694898 | Msa0555650:CDS |
| GGATCAAAGAGCAGAAGAGT+CGG | 0.590403 | 4_1:-53692694 | None:intergenic |
| TGATGCTCAAGCTGCACAAG+AGG | 0.591848 | 4_1:+53695256 | Msa0555650:three_prime_UTR |
| GTTGACACGCTTGAAGCTGA+AGG | 0.592704 | 4_1:-53694953 | None:intergenic |
| CTTACATAAGGTAATGTTGG+AGG | 0.607166 | 4_1:-53694992 | None:intergenic |
| ATGTGGATGTTGGGTCATGA+AGG | 0.609060 | 4_1:-53695150 | None:intergenic |
| CCACAAGTCTCAACATAGCA+TGG | 0.609702 | 4_1:-53695492 | None:intergenic |
| TGCACAAGAGGAATGTCACC+AGG | 0.609776 | 4_1:+53695268 | Msa0555650:three_prime_UTR |
| AAACAGAACAAACAGCATGA+AGG | 0.612260 | 4_1:-53693541 | None:intergenic |
| AGACGGTGGACAGAGAGATA+CGG | 0.622406 | 4_1:-53692649 | None:intergenic |
| TCTACTTCAACAGTTGCATG+AGG | 0.623774 | 4_1:-53694474 | None:intergenic |
| TGTGTGTAACAATATCACTC+TGG | 0.630902 | 4_1:-53694880 | None:intergenic |
| CTTATTGTGGATAGATTCTG+CGG | 0.632972 | 4_1:-53692879 | None:intergenic |
| TGAATCCAGAAATCGGAGCG+TGG | 0.644301 | 4_1:-53692759 | None:intergenic |
| AATGTTGGAGGTGATGTTGG+AGG | 0.647701 | 4_1:-53694980 | None:intergenic |
| AGTCTCAACATAGCATGGTG+TGG | 0.652583 | 4_1:-53695487 | None:intergenic |
| CAAAGAGCAGAAGAGTCGGT+GGG | 0.652914 | 4_1:-53692690 | None:intergenic |
| ATATCAGGAGAAGCTAGTGA+AGG | 0.653116 | 4_1:+53695098 | Msa0555650:CDS |
| ATTGAAGAGAGACCAAACAC+AGG | 0.658659 | 4_1:+53695227 | Msa0555650:three_prime_UTR |
| GGAGTGAAAACCTTTGCGCA+CGG | 0.661160 | 4_1:-53693101 | None:intergenic |
| TGGAGAGACTGAGACGGTGG+TGG | 0.663144 | 4_1:-53692615 | None:intergenic |
| GATCAGAGAATATAGAGAGA+CGG | 0.667624 | 4_1:-53692666 | None:intergenic |
| TAACTCTGTTCACAGCGTAG+AGG | 0.674702 | 4_1:+53695419 | Msa0555650:three_prime_UTR |
| ATACATAGTCTAGATGTCAA+CGG | 0.678970 | 4_1:-53695370 | None:intergenic |
| ATGTTAGAGAGAGATGCTCG+AGG | 0.680827 | 4_1:-53692715 | None:intergenic |
| CAGAGAATATAGAGAGACGG+TGG | 0.680904 | 4_1:-53692663 | None:intergenic |
| CTGCTACTCAGAGATACATG+TGG | 0.684906 | 4_1:-53695167 | None:intergenic |
| GATGGATGGAGAGACTGAGA+CGG | 0.685873 | 4_1:-53692621 | None:intergenic |
| AGAGAGACCAAACACAGGAG+AGG | 0.688626 | 4_1:+53695232 | Msa0555650:three_prime_UTR |
| GGATGGAGAGACTGAGACGG+TGG | 0.713185 | 4_1:-53692618 | None:intergenic |
| AGGCATGTGAAAATGCATTG+AGG | 0.724703 | 4_1:+53693365 | Msa0555650:intron |
| CGGTGGACAGAGAGATACGG+TGG | 0.738791 | 4_1:-53692646 | None:intergenic |
| TCATGTAAAGAAGTTCTGGG+AGG | 0.774277 | 4_1:+53694708 | Msa0555650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTTATTATACTATTTAATT+AGG | - | chr4_1:53694629-53694648 | None:intergenic | 10.0% |
| !! | TCCATAATGATATTATAAAA+TGG | + | chr4_1:53693249-53693268 | Msa0555650:intron | 15.0% |
| !!! | ACCATTTTATAATATCATTA+TGG | - | chr4_1:53693253-53693272 | None:intergenic | 15.0% |
| !!! | TTGTTCATTTTGATTTTAAT+AGG | + | chr4_1:53694517-53694536 | Msa0555650:CDS | 15.0% |
| !! | ATTAAAGAGTAAACATATAT+AGG | - | chr4_1:53694785-53694804 | None:intergenic | 15.0% |
| !! | TGTTATAGAAATTGAATCAT+TGG | - | chr4_1:53692967-53692986 | None:intergenic | 20.0% |
| !! | CTTAATTAGTAATTACTGTT+TGG | + | chr4_1:53693337-53693356 | Msa0555650:intron | 20.0% |
| !! | ATCCAATAAAGGAATTAAAA+TGG | - | chr4_1:53693755-53693774 | None:intergenic | 20.0% |
| !! | TTAATTCCTTTATTGGATTT+AGG | + | chr4_1:53693757-53693776 | Msa0555650:intron | 20.0% |
| !! | TTAATTCCTAAATCCAATAA+AGG | - | chr4_1:53693766-53693785 | None:intergenic | 20.0% |
| !!! | AAATATTTTATCAGCACATT+TGG | + | chr4_1:53694239-53694258 | Msa0555650:intron | 20.0% |
| !! | TCAATAATTACACTTACATA+AGG | - | chr4_1:53695007-53695026 | None:intergenic | 20.0% |
| ! | TCTGAATTACTCACAATTAT+TGG | + | chr4_1:53692848-53692867 | Msa0555650:five_prime_UTR | 25.0% |
| ! | GAATTAGCATATAGTTATAC+AGG | - | chr4_1:53692994-53693013 | None:intergenic | 25.0% |
| ! | AATAATGATGTTCAAAAGCT+TGG | + | chr4_1:53693397-53693416 | Msa0555650:CDS | 25.0% |
| ! | CTAATCCTAAAATACAACAA+AGG | + | chr4_1:53693728-53693747 | Msa0555650:intron | 25.0% |
| !!! | GACCATTTTAATTCCTTTAT+TGG | + | chr4_1:53693750-53693769 | Msa0555650:intron | 25.0% |
| ! | ATTGTTCGTTTCGTTTAATA+AGG | - | chr4_1:53693963-53693982 | None:intergenic | 25.0% |
| !! | TATCTTTTTACCCTTTATTC+TGG | + | chr4_1:53694016-53694035 | Msa0555650:intron | 25.0% |
| ! | TTTACCTATACCAGAATAAA+GGG | - | chr4_1:53694029-53694048 | None:intergenic | 25.0% |
| ! | GAAACAACACAAAATAATAG+AGG | - | chr4_1:53694067-53694086 | None:intergenic | 25.0% |
| ! | TTAACAAGTTAGAAACTTTC+CGG | - | chr4_1:53694349-53694368 | None:intergenic | 25.0% |
| ! | TTATTTGATTCTCATATCTC+TGG | + | chr4_1:53694429-53694448 | Msa0555650:intron | 25.0% |
| ! | GTACTTAGTTTATCCTATTA+TGG | + | chr4_1:53694659-53694678 | Msa0555650:intron | 25.0% |
| !! | TGATTTGGAGATAAAATTGA+AGG | + | chr4_1:53695307-53695326 | Msa0555650:three_prime_UTR | 25.0% |
| !! | TTTAGCTTATGTTGATTAGA+TGG | + | chr4_1:53695586-53695605 | Msa0555650:three_prime_UTR | 25.0% |
| !!! | ACATTCGCTTTTGTTTTTGA+AGG | - | chr4_1:53692527-53692546 | None:intergenic | 30.0% |
| ! | TTTTTCTCTTTTACGACACT+GGG | - | chr4_1:53692578-53692597 | None:intergenic | 30.0% |
| !!! | TTTTTTCTCTTTTACGACAC+TGG | - | chr4_1:53692579-53692598 | None:intergenic | 30.0% |
| TTGTTTGACATTGAGATATG+AGG | + | chr4_1:53693054-53693073 | Msa0555650:five_prime_UTR | 30.0% | |
| !! | ATGGTCCTTTGTTGTATTTT+AGG | - | chr4_1:53693736-53693755 | None:intergenic | 30.0% |
| ATTAAAATCATCCTATCTGC+AGG | + | chr4_1:53693781-53693800 | Msa0555650:intron | 30.0% | |
| AATTTCAAATGCAGAAAACC+AGG | - | chr4_1:53693850-53693869 | None:intergenic | 30.0% | |
| AACGAACAATTATATAGCTC+TGG | + | chr4_1:53693973-53693992 | Msa0555650:intron | 30.0% | |
| TTTACCCTTTATTCTGGTAT+AGG | + | chr4_1:53694022-53694041 | Msa0555650:intron | 30.0% | |
| GTTTACCTATACCAGAATAA+AGG | - | chr4_1:53694030-53694049 | None:intergenic | 30.0% | |
| !!! | TATTTTGTGTTGTTTCCCAT+AGG | + | chr4_1:53694071-53694090 | Msa0555650:intron | 30.0% |
| ATATGCTCAATGCTATGTTA+TGG | + | chr4_1:53694299-53694318 | Msa0555650:intron | 30.0% | |
| TATGCTCAATGCTATGTTAT+GGG | + | chr4_1:53694300-53694319 | Msa0555650:intron | 30.0% | |
| GATATGATATGTCTCTTAAG+TGG | + | chr4_1:53694401-53694420 | Msa0555650:intron | 30.0% | |
| TTACATGAACATTCTTTGAG+TGG | - | chr4_1:53694696-53694715 | None:intergenic | 30.0% | |
| ATGTTCATGTAAAGAAGTTC+TGG | + | chr4_1:53694704-53694723 | Msa0555650:CDS | 30.0% | |
| TGTTCATGTAAAGAAGTTCT+GGG | + | chr4_1:53694705-53694724 | Msa0555650:CDS | 30.0% | |
| GAGTAAACATATATAGGAAG+CGG | - | chr4_1:53694779-53694798 | None:intergenic | 30.0% | |
| GTTACACACAATGTTATAGT+TGG | + | chr4_1:53694893-53694912 | Msa0555650:CDS | 30.0% | |
| ACACTTACATAAGGTAATGT+TGG | - | chr4_1:53694998-53695017 | None:intergenic | 30.0% | |
| ATACATAGTCTAGATGTCAA+CGG | - | chr4_1:53695373-53695392 | None:intergenic | 30.0% | |
| TACTTTACTCTCTAACTTTG+AGG | + | chr4_1:53695451-53695470 | Msa0555650:three_prime_UTR | 30.0% | |
| ! | GGATTGATAATTATTGAGAC+TGG | + | chr4_1:53695513-53695532 | Msa0555650:three_prime_UTR | 30.0% |
| ! | TTTTCTCTTTTACGACACTG+GGG | - | chr4_1:53692577-53692596 | None:intergenic | 35.0% |
| GATCAGAGAATATAGAGAGA+CGG | - | chr4_1:53692669-53692688 | None:intergenic | 35.0% | |
| AACTAACGATTTCACGTCTT+TGG | - | chr4_1:53692795-53692814 | None:intergenic | 35.0% | |
| CTTATTGTGGATAGATTCTG+CGG | - | chr4_1:53692882-53692901 | None:intergenic | 35.0% | |
| TTGAAATTCCACAACGCAAA+AGG | - | chr4_1:53693024-53693043 | None:intergenic | 35.0% | |
| ATTCGTTACCTTTACTGCAA+GGG | - | chr4_1:53693125-53693144 | None:intergenic | 35.0% | |
| AATTCGTTACCTTTACTGCA+AGG | - | chr4_1:53693126-53693145 | None:intergenic | 35.0% | |
| ! | GTAATTACTGTTTGGTGAGT+AGG | + | chr4_1:53693345-53693364 | Msa0555650:intron | 35.0% |
| !! | CATTAGCCTTCAAATTTGCA+GGG | - | chr4_1:53693435-53693454 | None:intergenic | 35.0% |
| ATGCTATCAGTGAGATTACT+AGG | + | chr4_1:53693452-53693471 | Msa0555650:CDS | 35.0% | |
| ! | GCATTGACATCAATTACTTC+AGG | + | chr4_1:53693487-53693506 | Msa0555650:CDS | 35.0% |
| ! | ACATCAATTACTTCAGGTTC+TGG | + | chr4_1:53693493-53693512 | Msa0555650:CDS | 35.0% |
| AAACAGAACAAACAGCATGA+AGG | - | chr4_1:53693544-53693563 | None:intergenic | 35.0% | |
| TCAGAATATCTTTGCATTGC+AGG | - | chr4_1:53693707-53693726 | None:intergenic | 35.0% | |
| TATTGTTGCATCAAGTTTGC+AGG | + | chr4_1:53693928-53693947 | Msa0555650:intron | 35.0% | |
| TAAAAAGATACACCTTCGCT+GGG | - | chr4_1:53694006-53694025 | None:intergenic | 35.0% | |
| TTGAATAGGATTACCTCCAA+TGG | - | chr4_1:53694105-53694124 | None:intergenic | 35.0% | |
| ATTGGAGGTAATCCTATTCA+AGG | + | chr4_1:53694104-53694123 | Msa0555650:intron | 35.0% | |
| TGAGCATATGTAAAGCCAAA+AGG | - | chr4_1:53694288-53694307 | None:intergenic | 35.0% | |
| TAACTAAGAAAGAATGCCAG+AGG | - | chr4_1:53694557-53694576 | None:intergenic | 35.0% | |
| TAGTTATGACGTGATTGTCT+AGG | + | chr4_1:53694571-53694590 | Msa0555650:intron | 35.0% | |
| GACATACACATAAGCAACAA+CGG | - | chr4_1:53694743-53694762 | None:intergenic | 35.0% | |
| TGTGTGTAACAATATCACTC+TGG | - | chr4_1:53694883-53694902 | None:intergenic | 35.0% | |
| ACACACAATGTTATAGTTGG+AGG | + | chr4_1:53694896-53694915 | Msa0555650:CDS | 35.0% | |
| CACACAATGTTATAGTTGGA+GGG | + | chr4_1:53694897-53694916 | Msa0555650:CDS | 35.0% | |
| ACACAATGTTATAGTTGGAG+GGG | + | chr4_1:53694898-53694917 | Msa0555650:CDS | 35.0% | |
| CTTACATAAGGTAATGTTGG+AGG | - | chr4_1:53694995-53695014 | None:intergenic | 35.0% | |
| !! | CTAGTGAAGGCATTTGAAAA+TGG | + | chr4_1:53695111-53695130 | Msa0555650:CDS | 35.0% |
| ATTTGAAAATGGCACCAAGA+TGG | + | chr4_1:53695122-53695141 | Msa0555650:CDS | 35.0% | |
| TGACATCTAGACTATGTATG+AGG | + | chr4_1:53695374-53695393 | Msa0555650:three_prime_UTR | 35.0% | |
| CTAACATTCTCTCGCAGTTT+CGG | + | chr4_1:53692731-53692750 | Msa0555650:five_prime_UTR | 40.0% | |
| CCAAGAGTGAATCCAGAAAT+CGG | - | chr4_1:53692769-53692788 | None:intergenic | 40.0% | |
| TTTGAGAAGTTGCGTCAATC+TGG | - | chr4_1:53692828-53692847 | None:intergenic | 40.0% | |
| CGAGAACGAAAAGCTTATTG+TGG | - | chr4_1:53692895-53692914 | None:intergenic | 40.0% | |
| !!! | CGTTTTTTCCTTTTGCGTTG+TGG | + | chr4_1:53693013-53693032 | Msa0555650:intron | 40.0% |
| ! | TTTTCACTCCCTTGCAGTAA+AGG | + | chr4_1:53693114-53693133 | Msa0555650:CDS | 40.0% |
| AGGCATGTGAAAATGCATTG+AGG | + | chr4_1:53693365-53693384 | Msa0555650:intron | 40.0% | |
| GAAAATGCATTGAGGTGCAT+TGG | + | chr4_1:53693373-53693392 | Msa0555650:CDS | 40.0% | |
| !! | GCATTAGCCTTCAAATTTGC+AGG | - | chr4_1:53693436-53693455 | None:intergenic | 40.0% |
| TGTGTTGTGTCAGTGCTAAT+AGG | - | chr4_1:53693657-53693676 | None:intergenic | 40.0% | |
| GTAAAAAGATACACCTTCGC+TGG | - | chr4_1:53694007-53694026 | None:intergenic | 40.0% | |
| AATAGAGGCAGATGAGATGA+TGG | - | chr4_1:53694052-53694071 | None:intergenic | 40.0% | |
| ATAGGATTACCTCCAATGGA+TGG | - | chr4_1:53694101-53694120 | None:intergenic | 40.0% | |
| AATCCTATTCAAGGCGAAGT+CGG | + | chr4_1:53694113-53694132 | Msa0555650:intron | 40.0% | |
| ATACAAATGCCCACGAAAGT+GGG | - | chr4_1:53694162-53694181 | None:intergenic | 40.0% | |
| AATACAAATGCCCACGAAAG+TGG | - | chr4_1:53694163-53694182 | None:intergenic | 40.0% | |
| GGGTGTATACGTTGAATTCT+TGG | + | chr4_1:53694320-53694339 | Msa0555650:intron | 40.0% | |
| ACAAGTTAGAAACTTTCCGG+TGG | - | chr4_1:53694346-53694365 | None:intergenic | 40.0% | |
| GAATAATATGCTTGTCCTGC+TGG | + | chr4_1:53694376-53694395 | Msa0555650:intron | 40.0% | |
| TCTACTTCAACAGTTGCATG+AGG | - | chr4_1:53694477-53694496 | None:intergenic | 40.0% | |
| !! | TCATGTAAAGAAGTTCTGGG+AGG | + | chr4_1:53694708-53694727 | Msa0555650:CDS | 40.0% |
| TTCTCGTCATGCAACTCAAA+AGG | - | chr4_1:53694826-53694845 | None:intergenic | 40.0% | |
| AATGTTATAGTTGGAGGGGA+AGG | + | chr4_1:53694902-53694921 | Msa0555650:CDS | 40.0% | |
| TTCTAGCATGCATCTATCAC+AGG | + | chr4_1:53694925-53694944 | Msa0555650:CDS | 40.0% | |
| TGCATTGTTCTATTGTGAGC+AGG | + | chr4_1:53695071-53695090 | Msa0555650:intron | 40.0% | |
| TTGTGAGCAGGAAACATATC+AGG | + | chr4_1:53695083-53695102 | Msa0555650:intron | 40.0% | |
| ATATCAGGAGAAGCTAGTGA+AGG | + | chr4_1:53695098-53695117 | Msa0555650:CDS | 40.0% | |
| TCATGAAGGATCAACCATCT+TGG | - | chr4_1:53695139-53695158 | None:intergenic | 40.0% | |
| CAGAGATACATGTGGATGTT+GGG | - | chr4_1:53695162-53695181 | None:intergenic | 40.0% | |
| TCAGAGATACATGTGGATGT+TGG | - | chr4_1:53695163-53695182 | None:intergenic | 40.0% | |
| TTTCGATATTGCTGCAGAGA+TGG | + | chr4_1:53695199-53695218 | Msa0555650:three_prime_UTR | 40.0% | |
| ATTGAAGAGAGACCAAACAC+AGG | + | chr4_1:53695227-53695246 | Msa0555650:three_prime_UTR | 40.0% | |
| AAATGAGCGCACACATGATT+TGG | + | chr4_1:53695292-53695311 | Msa0555650:three_prime_UTR | 40.0% | |
| CAGAGAATATAGAGAGACGG+TGG | - | chr4_1:53692666-53692685 | None:intergenic | 45.0% | |
| GGATCAAAGAGCAGAAGAGT+CGG | - | chr4_1:53692697-53692716 | None:intergenic | 45.0% | |
| ATGTTAGAGAGAGATGCTCG+AGG | - | chr4_1:53692718-53692737 | None:intergenic | 45.0% | |
| ! | CCGATTTCTGGATTCACTCT+TGG | + | chr4_1:53692766-53692785 | Msa0555650:five_prime_UTR | 45.0% |
| ATCCTATTCAAGGCGAAGTC+GGG | + | chr4_1:53694114-53694133 | Msa0555650:intron | 45.0% | |
| TACAAATGCCCACGAAAGTG+GGG | - | chr4_1:53694161-53694180 | None:intergenic | 45.0% | |
| TGGTCAAGTTCACCTTACTC+TGG | + | chr4_1:53694259-53694278 | Msa0555650:intron | 45.0% | |
| ! | ACCTTACTCTGGATGCCTTT+TGG | + | chr4_1:53694270-53694289 | Msa0555650:intron | 45.0% |
| TACGTTGAATTCTTGGCCAC+CGG | + | chr4_1:53694327-53694346 | Msa0555650:intron | 45.0% | |
| TAATATGCTTGTCCTGCTGG+TGG | + | chr4_1:53694379-53694398 | Msa0555650:intron | 45.0% | |
| GACATATCATATCCACCAGC+AGG | - | chr4_1:53694394-53694413 | None:intergenic | 45.0% | |
| GGTAAAGCTTCACTTTCCTC+TGG | + | chr4_1:53694538-53694557 | Msa0555650:intron | 45.0% | |
| ATCCTATTATGGCCGAACAG+AGG | + | chr4_1:53694670-53694689 | Msa0555650:intron | 45.0% | |
| TTCTTTGAGTGGCCTCTGTT+CGG | - | chr4_1:53694685-53694704 | None:intergenic | 45.0% | |
| ATAAGCAACAACGGCCGTAA+CGG | - | chr4_1:53694734-53694753 | None:intergenic | 45.0% | |
| AATGTTGGAGGTGATGTTGG+AGG | - | chr4_1:53694983-53695002 | None:intergenic | 45.0% | |
| GGTAATGTTGGAGGTGATGT+TGG | - | chr4_1:53694986-53695005 | None:intergenic | 45.0% | |
| ATGTGGATGTTGGGTCATGA+AGG | - | chr4_1:53695153-53695172 | None:intergenic | 45.0% | |
| CTGCTACTCAGAGATACATG+TGG | - | chr4_1:53695170-53695189 | None:intergenic | 45.0% | |
| !! | TGAGAGTGTTGCTTCCATCA+AGG | + | chr4_1:53695337-53695356 | Msa0555650:three_prime_UTR | 45.0% |
| !! | GAGAGTGTTGCTTCCATCAA+GGG | + | chr4_1:53695338-53695357 | Msa0555650:three_prime_UTR | 45.0% |
| TAACTCTGTTCACAGCGTAG+AGG | + | chr4_1:53695419-53695438 | Msa0555650:three_prime_UTR | 45.0% | |
| AGTCTCAACATAGCATGGTG+TGG | - | chr4_1:53695490-53695509 | None:intergenic | 45.0% | |
| CCACAAGTCTCAACATAGCA+TGG | - | chr4_1:53695495-53695514 | None:intergenic | 45.0% | |
| CCATGCTATGTTGAGACTTG+TGG | + | chr4_1:53695492-53695511 | Msa0555650:three_prime_UTR | 45.0% | |
| GATGGATGGAGAGACTGAGA+CGG | - | chr4_1:53692624-53692643 | None:intergenic | 50.0% | |
| AGACGGTGGACAGAGAGATA+CGG | - | chr4_1:53692652-53692671 | None:intergenic | 50.0% | |
| CAAAGAGCAGAAGAGTCGGT+GGG | - | chr4_1:53692693-53692712 | None:intergenic | 50.0% | |
| TCAAAGAGCAGAAGAGTCGG+TGG | - | chr4_1:53692694-53692713 | None:intergenic | 50.0% | |
| ACATTCTCTCGCAGTTTCGG+CGG | + | chr4_1:53692734-53692753 | Msa0555650:five_prime_UTR | 50.0% | |
| TGAATCCAGAAATCGGAGCG+TGG | - | chr4_1:53692762-53692781 | None:intergenic | 50.0% | |
| GTGGATAGATTCTGCGGTGA+TGG | - | chr4_1:53692876-53692895 | None:intergenic | 50.0% | |
| GAACTCAATTCCGTGCGCAA+AGG | + | chr4_1:53693091-53693110 | Msa0555650:CDS | 50.0% | |
| GGAGTGAAAACCTTTGCGCA+CGG | - | chr4_1:53693104-53693123 | None:intergenic | 50.0% | |
| CGCGATCCCTGCAAATTTGA+AGG | + | chr4_1:53693426-53693445 | Msa0555650:CDS | 50.0% | |
| ATCCTATCTGCAGGAGCTAG+AGG | + | chr4_1:53693790-53693809 | Msa0555650:intron | 50.0% | |
| ! | TACCTCTAGCTCCTGCAGAT+AGG | - | chr4_1:53693795-53693814 | None:intergenic | 50.0% |
| AAAGATACACCTTCGCTGGG+AGG | - | chr4_1:53694003-53694022 | None:intergenic | 50.0% | |
| CCAATGGATGGAGCTCCTAT+GGG | - | chr4_1:53694089-53694108 | None:intergenic | 50.0% | |
| TCCAATGGATGGAGCTCCTA+TGG | - | chr4_1:53694090-53694109 | None:intergenic | 50.0% | |
| ATAGGAGCTCCATCCATTGG+AGG | + | chr4_1:53694089-53694108 | Msa0555650:intron | 50.0% | |
| !! | GCCAAAAGGCATCCAGAGTA+AGG | - | chr4_1:53694274-53694293 | None:intergenic | 50.0% |
| GTTGACACGCTTGAAGCTGA+AGG | - | chr4_1:53694956-53694975 | None:intergenic | 50.0% | |
| AGAGAGACCAAACACAGGAG+AGG | + | chr4_1:53695232-53695251 | Msa0555650:three_prime_UTR | 50.0% | |
| GCATCATCCTCTCCTGTGTT+TGG | - | chr4_1:53695242-53695261 | None:intergenic | 50.0% | |
| TGATGCTCAAGCTGCACAAG+AGG | + | chr4_1:53695256-53695275 | Msa0555650:three_prime_UTR | 50.0% | |
| TGCACAAGAGGAATGTCACC+AGG | + | chr4_1:53695268-53695287 | Msa0555650:three_prime_UTR | 50.0% | |
| ! | CATGTGTGCGCTCATTTTCC+TGG | - | chr4_1:53695289-53695308 | None:intergenic | 50.0% |
| ! | ACGGTGTTAGTCACCCTTGA+TGG | - | chr4_1:53695354-53695373 | None:intergenic | 50.0% |
| GAGATACGGTGGTCGATGGA+TGG | - | chr4_1:53692638-53692657 | None:intergenic | 55.0% | |
| CAGAGAGATACGGTGGTCGA+TGG | - | chr4_1:53692642-53692661 | None:intergenic | 55.0% | |
| CGCTCTCGTCAGAGATCTAG+AGG | + | chr4_1:53692934-53692953 | Msa0555650:five_prime_UTR | 55.0% | |
| CAGGTCGAGCTCTTGCTGAT+AGG | - | chr4_1:53693831-53693850 | None:intergenic | 55.0% | |
| CTATCAGCAAGAGCTCGACC+TGG | + | chr4_1:53693829-53693848 | Msa0555650:intron | 55.0% | |
| TCTGGAAATCCTCCCAGCGA+AGG | + | chr4_1:53693991-53694010 | Msa0555650:intron | 55.0% | |
| CCCATAGGAGCTCCATCCAT+TGG | + | chr4_1:53694086-53694105 | Msa0555650:intron | 55.0% | |
| TGCCCGACTTCGCCTTGAAT+AGG | - | chr4_1:53694119-53694138 | None:intergenic | 55.0% | |
| !! | CGAAGTCGGGCACTGAATGT+GGG | + | chr4_1:53694127-53694146 | Msa0555650:intron | 55.0% |
| CACCTCATCCCCACTTTCGT+GGG | + | chr4_1:53694150-53694169 | Msa0555650:intron | 55.0% | |
| GGCCTCTGTTCGGCCATAAT+AGG | - | chr4_1:53694675-53694694 | None:intergenic | 55.0% | |
| !! | GAAGTTCTGGGAGGCCGTTA+CGG | + | chr4_1:53694717-53694736 | Msa0555650:intron | 55.0% |
| CAGCTTCAAGCGTGTCAACC+AGG | + | chr4_1:53694957-53694976 | Msa0555650:CDS | 55.0% | |
| TGGAGAGACTGAGACGGTGG+TGG | - | chr4_1:53692618-53692637 | None:intergenic | 60.0% | |
| GGATGGAGAGACTGAGACGG+TGG | - | chr4_1:53692621-53692640 | None:intergenic | 60.0% | |
| CGGTGGACAGAGAGATACGG+TGG | - | chr4_1:53692649-53692668 | None:intergenic | 60.0% | |
| CGGTTCCACGCTCCGATTTC+TGG | + | chr4_1:53692754-53692773 | Msa0555650:five_prime_UTR | 60.0% | |
| !! | GCGAAGTCGGGCACTGAATG+TGG | + | chr4_1:53694126-53694145 | Msa0555650:intron | 60.0% |
| GCACCTCATCCCCACTTTCG+TGG | + | chr4_1:53694149-53694168 | Msa0555650:intron | 60.0% | |
| TGCCCACGAAAGTGGGGATG+AGG | - | chr4_1:53694155-53694174 | None:intergenic | 60.0% | |
| TGGAGGTGATGTTGGAGGCC+TGG | - | chr4_1:53694978-53694997 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 53692517 | 53695612 | 53692517 | ID=Msa0555650;Name=Msa0555650 |
| chr4_1 | mRNA | 53692517 | 53695612 | 53692517 | ID=Msa0555650-mRNA-1;Parent=Msa0555650;Name=Msa0555650-mRNA-1;_AED=0.16;_eAED=0.16;_QI=472|0.5|0.71|0.85|0.33|0.42|7|454|213 |
| chr4_1 | exon | 53692517 | 53692955 | 53692517 | ID=Msa0555650-mRNA-1:exon:15654;Parent=Msa0555650-mRNA-1 |
| chr4_1 | exon | 53693052 | 53693135 | 53693052 | ID=Msa0555650-mRNA-1:exon:15655;Parent=Msa0555650-mRNA-1 |
| chr4_1 | exon | 53693367 | 53693588 | 53693367 | ID=Msa0555650-mRNA-1:exon:15656;Parent=Msa0555650-mRNA-1 |
| chr4_1 | exon | 53694468 | 53694538 | 53694468 | ID=Msa0555650-mRNA-1:exon:15657;Parent=Msa0555650-mRNA-1 |
| chr4_1 | exon | 53694692 | 53694732 | 53694692 | ID=Msa0555650-mRNA-1:exon:15658;Parent=Msa0555650-mRNA-1 |
| chr4_1 | exon | 53694819 | 53695009 | 53694819 | ID=Msa0555650-mRNA-1:exon:15659;Parent=Msa0555650-mRNA-1 |
| chr4_1 | exon | 53695093 | 53695612 | 53695093 | ID=Msa0555650-mRNA-1:exon:15660;Parent=Msa0555650-mRNA-1 |
| chr4_1 | five_prime_UTR | 53692517 | 53692955 | 53692517 | ID=Msa0555650-mRNA-1:five_prime_utr;Parent=Msa0555650-mRNA-1 |
| chr4_1 | five_prime_UTR | 53693052 | 53693084 | 53693052 | ID=Msa0555650-mRNA-1:five_prime_utr;Parent=Msa0555650-mRNA-1 |
| chr4_1 | CDS | 53693085 | 53693135 | 53693085 | ID=Msa0555650-mRNA-1:cds;Parent=Msa0555650-mRNA-1 |
| chr4_1 | CDS | 53693367 | 53693588 | 53693367 | ID=Msa0555650-mRNA-1:cds;Parent=Msa0555650-mRNA-1 |
| chr4_1 | CDS | 53694468 | 53694538 | 53694468 | ID=Msa0555650-mRNA-1:cds;Parent=Msa0555650-mRNA-1 |
| chr4_1 | CDS | 53694692 | 53694732 | 53694692 | ID=Msa0555650-mRNA-1:cds;Parent=Msa0555650-mRNA-1 |
| chr4_1 | CDS | 53694819 | 53695009 | 53694819 | ID=Msa0555650-mRNA-1:cds;Parent=Msa0555650-mRNA-1 |
| chr4_1 | CDS | 53695093 | 53695158 | 53695093 | ID=Msa0555650-mRNA-1:cds;Parent=Msa0555650-mRNA-1 |
| chr4_1 | three_prime_UTR | 53695159 | 53695612 | 53695159 | ID=Msa0555650-mRNA-1:three_prime_utr;Parent=Msa0555650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
