Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913060 | RHN45750.1 | 86.957 | 115 | 13 | 1 | 19 | 131 | 202 | 316 | 2.76e-62 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913060 | sp|Q9FHN4|PME60_ARATH | 63.889 | 108 | 35 | 3 | 27 | 131 | 203 | 309 | 3.45e-35 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009420 | Msa0913060 | 0.805261 | 1.453593e-49 | -8.615850e-47 |
| Msa0105260 | Msa0913060 | 0.809119 | 2.214471e-50 | -8.615850e-47 |
| Msa0669410 | Msa0913060 | 0.821323 | 4.293069e-53 | -8.615850e-47 |
| Msa0800210 | Msa0913060 | 0.830606 | 2.671616e-55 | -8.615850e-47 |
| Msa0408870 | Msa0913060 | 0.801198 | 1.008419e-48 | -8.615850e-47 |
| Msa0434000 | Msa0913060 | 0.830391 | 3.015336e-55 | -8.615850e-47 |
| Msa0492840 | Msa0913060 | 0.800483 | 1.410900e-48 | -8.615850e-47 |
| Msa0555650 | Msa0913060 | 0.817253 | 3.630058e-52 | -8.615850e-47 |
| Msa0597040 | Msa0913060 | 0.813729 | 2.208477e-51 | -8.615850e-47 |
| Msa0598790 | Msa0913060 | 0.812782 | 3.564328e-51 | -8.615850e-47 |
| Msa0598880 | Msa0913060 | -0.817698 | 2.880950e-52 | -8.615850e-47 |
| Msa0842710 | Msa0913060 | 0.836824 | 7.462379e-57 | -8.615850e-47 |
| Msa0900980 | Msa0913060 | 0.810569 | 1.079724e-50 | -8.615850e-47 |
| Msa0901020 | Msa0913060 | 0.822885 | 1.864293e-53 | -8.615850e-47 |
| Msa0913060 | Msa0916690 | 0.853157 | 2.877090e-61 | -8.615850e-47 |
| Msa0913060 | Msa0967280 | 0.819991 | 8.683475e-53 | -8.615850e-47 |
| Msa0913060 | Msa0998680 | 0.833961 | 3.946587e-56 | -8.615850e-47 |
| Msa0913060 | Msa1002360 | 0.824248 | 8.944334e-54 | -8.615850e-47 |
| Msa0913060 | Msa1248300 | 0.803742 | 3.014398e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913060 | MtrunA17_Chr7g0234731 | 86.957 | 115 | 13 | 1 | 19 | 131 | 202 | 316 | 2.53e-66 | 206 |
| Msa0913060 | MtrunA17_Chr3g0079351 | 86.957 | 115 | 13 | 1 | 19 | 131 | 183 | 297 | 1.03e-62 | 203 |
| Msa0913060 | MtrunA17_Chr3g0079341 | 86.957 | 115 | 13 | 1 | 19 | 131 | 183 | 297 | 1.32e-62 | 202 |
| Msa0913060 | MtrunA17_Chr3g0079361 | 86.087 | 115 | 14 | 1 | 19 | 131 | 183 | 297 | 2.42e-61 | 199 |
| Msa0913060 | MtrunA17_Chr3g0090091 | 87.156 | 109 | 12 | 1 | 25 | 131 | 190 | 298 | 1.55e-59 | 194 |
| Msa0913060 | MtrunA17_Chr4g0018371 | 64.815 | 108 | 36 | 1 | 26 | 131 | 202 | 309 | 3.30e-41 | 146 |
| Msa0913060 | MtrunA17_Chr4g0011771 | 43.293 | 164 | 70 | 7 | 19 | 180 | 175 | 317 | 3.39e-26 | 105 |
| Msa0913060 | MtrunA17_Chr7g0233771 | 50.467 | 107 | 49 | 3 | 29 | 132 | 219 | 324 | 9.70e-24 | 98.2 |
| Msa0913060 | MtrunA17_Chr7g0233801 | 47.748 | 111 | 54 | 3 | 29 | 136 | 219 | 328 | 3.68e-23 | 96.7 |
| Msa0913060 | MtrunA17_Chr8g0345281 | 46.341 | 123 | 59 | 4 | 14 | 131 | 240 | 360 | 5.13e-23 | 96.3 |
| Msa0913060 | MtrunA17_Chr7g0269541 | 39.333 | 150 | 72 | 5 | 29 | 175 | 223 | 356 | 5.73e-23 | 95.9 |
| Msa0913060 | MtrunA17_Chr4g0011791 | 49.524 | 105 | 50 | 2 | 29 | 132 | 182 | 284 | 2.84e-22 | 94.0 |
| Msa0913060 | MtrunA17_Chr4g0067611 | 41.860 | 129 | 71 | 3 | 4 | 129 | 210 | 337 | 6.65e-22 | 93.2 |
| Msa0913060 | MtrunA17_Chr7g0233831 | 45.794 | 107 | 54 | 3 | 29 | 132 | 220 | 325 | 7.58e-22 | 92.8 |
| Msa0913060 | MtrunA17_Chr8g0391291 | 45.794 | 107 | 52 | 2 | 29 | 129 | 202 | 308 | 1.20e-20 | 89.4 |
| Msa0913060 | MtrunA17_Chr4g0067601 | 42.478 | 113 | 62 | 2 | 21 | 131 | 228 | 339 | 1.61e-20 | 89.0 |
| Msa0913060 | MtrunA17_Chr8g0380581 | 36.306 | 157 | 87 | 3 | 29 | 174 | 45 | 199 | 1.64e-20 | 88.2 |
| Msa0913060 | MtrunA17_Chr8g0391311 | 43.243 | 111 | 55 | 3 | 29 | 132 | 204 | 313 | 4.71e-20 | 87.8 |
| Msa0913060 | MtrunA17_Chr2g0302021 | 44.545 | 110 | 57 | 3 | 22 | 129 | 187 | 294 | 5.34e-20 | 87.4 |
| Msa0913060 | MtrunA17_Chr8g0391281 | 43.119 | 109 | 56 | 2 | 29 | 131 | 202 | 310 | 2.37e-19 | 84.3 |
| Msa0913060 | MtrunA17_Chr7g0272141 | 45.192 | 104 | 53 | 3 | 29 | 129 | 218 | 320 | 2.39e-19 | 85.5 |
| Msa0913060 | MtrunA17_Chr3g0080391 | 44.118 | 102 | 55 | 2 | 30 | 129 | 247 | 348 | 1.54e-18 | 83.2 |
| Msa0913060 | MtrunA17_Chr4g0069841 | 42.857 | 119 | 57 | 4 | 13 | 129 | 176 | 285 | 2.41e-18 | 82.8 |
| Msa0913060 | MtrunA17_Chr8g0354901 | 42.991 | 107 | 58 | 2 | 26 | 129 | 249 | 355 | 2.62e-18 | 82.8 |
| Msa0913060 | MtrunA17_Chr4g0069861 | 37.288 | 118 | 70 | 3 | 14 | 129 | 171 | 286 | 5.35e-17 | 79.0 |
| Msa0913060 | MtrunA17_Chr7g0270651 | 37.671 | 146 | 74 | 5 | 27 | 164 | 229 | 365 | 5.97e-17 | 78.6 |
| Msa0913060 | MtrunA17_Chr4g0069881 | 31.818 | 154 | 90 | 5 | 32 | 174 | 207 | 356 | 1.14e-15 | 75.1 |
| Msa0913060 | MtrunA17_Chr1g0194091 | 41.121 | 107 | 59 | 3 | 26 | 129 | 227 | 332 | 1.82e-15 | 74.3 |
| Msa0913060 | MtrunA17_Chr7g0270631 | 36.301 | 146 | 76 | 5 | 27 | 164 | 217 | 353 | 2.15e-15 | 74.3 |
| Msa0913060 | MtrunA17_Chr7g0270631 | 39.062 | 128 | 61 | 4 | 27 | 138 | 765 | 891 | 3.29e-15 | 73.9 |
| Msa0913060 | MtrunA17_Chr2g0299431 | 40.909 | 110 | 56 | 4 | 10 | 117 | 17 | 119 | 2.85e-15 | 72.8 |
| Msa0913060 | MtrunA17_Chr1g0194081 | 40.678 | 118 | 64 | 3 | 17 | 129 | 218 | 334 | 3.12e-15 | 73.6 |
| Msa0913060 | MtrunA17_Chr1g0192311 | 40.187 | 107 | 57 | 3 | 30 | 131 | 235 | 339 | 3.63e-15 | 73.6 |
| Msa0913060 | MtrunA17_Chr1g0192281 | 40.187 | 107 | 57 | 3 | 30 | 131 | 235 | 339 | 3.63e-15 | 73.6 |
| Msa0913060 | MtrunA17_Chr7g0270661 | 34.247 | 146 | 79 | 5 | 27 | 164 | 229 | 365 | 4.63e-15 | 73.2 |
| Msa0913060 | MtrunA17_Chr7g0270671 | 34.247 | 146 | 79 | 5 | 27 | 164 | 229 | 365 | 4.63e-15 | 73.2 |
| Msa0913060 | MtrunA17_Chr7g0270691 | 31.515 | 165 | 92 | 6 | 9 | 164 | 194 | 346 | 4.98e-15 | 73.2 |
| Msa0913060 | MtrunA17_Chr4g0069891 | 34.507 | 142 | 79 | 6 | 27 | 164 | 260 | 391 | 1.17e-14 | 72.0 |
| Msa0913060 | MtrunA17_Chr1g0192301 | 36.923 | 130 | 74 | 4 | 8 | 131 | 217 | 344 | 2.00e-14 | 71.2 |
| Msa0913060 | MtrunA17_Chr4g0000121 | 36.923 | 130 | 74 | 4 | 8 | 131 | 199 | 326 | 3.24e-14 | 70.9 |
| Msa0913060 | MtrunA17_Chr2g0295551 | 38.053 | 113 | 66 | 3 | 21 | 131 | 221 | 331 | 1.41e-13 | 68.9 |
| Msa0913060 | MtrunA17_Chr1g0147051 | 36.607 | 112 | 65 | 5 | 27 | 133 | 270 | 380 | 1.54e-13 | 68.9 |
| Msa0913060 | MtrunA17_Chr7g0242281 | 85.714 | 35 | 5 | 0 | 177 | 211 | 119 | 153 | 1.62e-13 | 68.6 |
| Msa0913060 | MtrunA17_Chr8g0345211 | 39.091 | 110 | 63 | 3 | 23 | 129 | 245 | 353 | 1.62e-13 | 68.6 |
| Msa0913060 | MtrunA17_Chr1g0192331 | 38.835 | 103 | 55 | 3 | 34 | 129 | 194 | 295 | 2.77e-13 | 67.8 |
| Msa0913060 | MtrunA17_Chr2g0295531 | 33.613 | 119 | 75 | 3 | 15 | 131 | 197 | 313 | 6.20e-13 | 67.0 |
| Msa0913060 | MtrunA17_Chr2g0295541 | 38.053 | 113 | 66 | 3 | 21 | 131 | 221 | 331 | 6.76e-13 | 67.0 |
| Msa0913060 | MtrunA17_Chr3g0126771 | 32.456 | 114 | 72 | 4 | 24 | 133 | 258 | 370 | 7.03e-13 | 67.0 |
| Msa0913060 | MtrunA17_Chr1g0175661 | 39.216 | 102 | 53 | 3 | 36 | 129 | 228 | 328 | 1.00e-12 | 66.2 |
| Msa0913060 | MtrunA17_Chr3g0129921 | 46.341 | 82 | 39 | 3 | 57 | 133 | 251 | 332 | 1.57e-12 | 65.9 |
| Msa0913060 | MtrunA17_Chr1g0192321 | 37.615 | 109 | 60 | 4 | 30 | 131 | 246 | 353 | 3.42e-12 | 64.7 |
| Msa0913060 | MtrunA17_Chr4g0011751 | 39.535 | 86 | 48 | 2 | 48 | 129 | 173 | 258 | 1.22e-11 | 63.2 |
| Msa0913060 | MtrunA17_Chr7g0269521 | 38.235 | 102 | 54 | 3 | 36 | 129 | 232 | 332 | 5.43e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913060 | AT5G51500.1 | 63.889 | 108 | 35 | 3 | 27 | 131 | 203 | 309 | 3.51e-36 | 133 |
| Msa0913060 | AT5G51490.1 | 54.545 | 121 | 49 | 3 | 14 | 131 | 188 | 305 | 5.64e-35 | 130 |
| Msa0913060 | AT3G47400.1 | 60.000 | 110 | 40 | 2 | 26 | 131 | 254 | 363 | 7.29e-34 | 127 |
| Msa0913060 | AT1G23200.1 | 49.533 | 107 | 50 | 3 | 27 | 129 | 226 | 332 | 6.73e-25 | 102 |
| Msa0913060 | AT2G45220.1 | 43.571 | 140 | 61 | 5 | 25 | 162 | 182 | 305 | 7.49e-25 | 101 |
| Msa0913060 | AT1G11580.2 | 50.000 | 110 | 47 | 4 | 29 | 132 | 243 | 350 | 1.85e-22 | 95.1 |
| Msa0913060 | AT1G11580.1 | 50.000 | 110 | 47 | 4 | 29 | 132 | 222 | 329 | 2.12e-22 | 94.7 |
| Msa0913060 | AT5G27870.1 | 39.496 | 119 | 68 | 3 | 14 | 129 | 215 | 332 | 8.11e-21 | 90.5 |
| Msa0913060 | AT1G53830.1 | 51.887 | 106 | 47 | 3 | 29 | 132 | 256 | 359 | 1.36e-20 | 89.7 |
| Msa0913060 | AT3G14310.1 | 51.852 | 108 | 48 | 3 | 27 | 132 | 259 | 364 | 3.48e-20 | 88.6 |
| Msa0913060 | AT3G43270.1 | 44.660 | 103 | 54 | 2 | 29 | 129 | 193 | 294 | 2.97e-19 | 85.9 |
| Msa0913060 | AT4G02320.1 | 42.982 | 114 | 61 | 3 | 22 | 132 | 178 | 290 | 3.84e-19 | 85.5 |
| Msa0913060 | AT3G59010.1 | 44.348 | 115 | 59 | 3 | 21 | 132 | 198 | 310 | 9.06e-19 | 84.3 |
| Msa0913060 | AT4G00190.1 | 51.765 | 85 | 38 | 2 | 48 | 129 | 162 | 246 | 1.39e-18 | 83.6 |
| Msa0913060 | AT3G05620.1 | 37.226 | 137 | 71 | 4 | 30 | 162 | 218 | 343 | 1.54e-18 | 83.6 |
| Msa0913060 | AT3G05610.1 | 41.667 | 108 | 57 | 3 | 27 | 129 | 229 | 335 | 1.81e-18 | 83.6 |
| Msa0913060 | AT2G43050.1 | 39.535 | 129 | 67 | 5 | 13 | 132 | 171 | 297 | 7.02e-18 | 81.6 |
| Msa0913060 | AT4G33220.2 | 40.777 | 103 | 57 | 3 | 29 | 129 | 71 | 171 | 4.59e-16 | 76.3 |
| Msa0913060 | AT4G33220.1 | 40.777 | 103 | 57 | 3 | 29 | 129 | 192 | 292 | 4.96e-16 | 76.3 |
| Msa0913060 | AT3G60730.1 | 45.545 | 101 | 47 | 3 | 40 | 133 | 193 | 292 | 6.15e-16 | 76.3 |
| Msa0913060 | AT4G02300.1 | 37.398 | 123 | 63 | 5 | 21 | 132 | 185 | 304 | 1.26e-15 | 75.1 |
| Msa0913060 | AT2G26440.1 | 37.288 | 118 | 63 | 4 | 21 | 129 | 202 | 317 | 2.70e-15 | 74.3 |
| Msa0913060 | AT4G15980.1 | 40.952 | 105 | 54 | 4 | 15 | 113 | 353 | 455 | 3.82e-15 | 73.9 |
| Msa0913060 | AT5G49180.1 | 40.367 | 109 | 61 | 3 | 26 | 131 | 235 | 342 | 4.00e-15 | 73.9 |
| Msa0913060 | AT4G15980.2 | 40.952 | 105 | 54 | 4 | 15 | 113 | 363 | 465 | 4.55e-15 | 73.6 |
| Msa0913060 | AT5G09760.2 | 43.617 | 94 | 50 | 2 | 41 | 131 | 257 | 350 | 5.60e-15 | 73.2 |
| Msa0913060 | AT5G09760.1 | 43.617 | 94 | 50 | 2 | 41 | 131 | 231 | 324 | 6.07e-15 | 73.2 |
| Msa0913060 | AT2G47040.1 | 38.793 | 116 | 58 | 4 | 26 | 129 | 251 | 365 | 6.40e-15 | 73.2 |
| Msa0913060 | AT3G06830.1 | 36.937 | 111 | 62 | 4 | 26 | 129 | 229 | 338 | 1.47e-14 | 72.0 |
| Msa0913060 | AT5G53370.1 | 34.513 | 113 | 69 | 4 | 24 | 132 | 246 | 357 | 3.59e-14 | 70.9 |
| Msa0913060 | AT5G53370.2 | 34.513 | 113 | 69 | 4 | 24 | 132 | 282 | 393 | 4.68e-14 | 70.9 |
| Msa0913060 | AT3G27980.1 | 30.435 | 184 | 110 | 5 | 30 | 203 | 169 | 344 | 5.34e-14 | 70.5 |
| Msa0913060 | AT1G11590.1 | 30.481 | 187 | 110 | 6 | 30 | 203 | 192 | 371 | 7.46e-14 | 70.1 |
| Msa0913060 | AT5G20860.2 | 33.108 | 148 | 78 | 6 | 21 | 164 | 202 | 332 | 8.36e-14 | 69.7 |
| Msa0913060 | AT2G47030.1 | 37.815 | 119 | 58 | 4 | 26 | 129 | 241 | 358 | 1.09e-13 | 69.7 |
| Msa0913060 | AT4G03930.1 | 30.435 | 184 | 106 | 7 | 30 | 199 | 192 | 367 | 1.53e-13 | 68.9 |
| Msa0913060 | AT5G64640.1 | 43.678 | 87 | 44 | 3 | 50 | 131 | 288 | 374 | 1.98e-13 | 68.9 |
| Msa0913060 | AT3G49220.2 | 31.858 | 113 | 72 | 4 | 23 | 131 | 301 | 412 | 7.35e-13 | 67.0 |
| Msa0913060 | AT4G33230.1 | 38.235 | 102 | 58 | 3 | 32 | 129 | 276 | 376 | 8.70e-13 | 67.0 |
| Msa0913060 | AT3G62170.1 | 37.302 | 126 | 55 | 5 | 27 | 129 | 234 | 358 | 1.69e-12 | 66.2 |
| Msa0913060 | AT3G49220.1 | 31.579 | 114 | 73 | 4 | 23 | 132 | 256 | 368 | 1.78e-12 | 66.2 |
| Msa0913060 | AT3G49220.3 | 31.579 | 114 | 73 | 4 | 23 | 132 | 301 | 413 | 2.03e-12 | 65.9 |
| Msa0913060 | AT5G04960.1 | 38.144 | 97 | 58 | 2 | 35 | 129 | 241 | 337 | 2.32e-12 | 65.9 |
| Msa0913060 | AT4G02330.1 | 37.143 | 105 | 57 | 3 | 34 | 129 | 237 | 341 | 2.74e-12 | 65.5 |
| Msa0913060 | AT3G10710.1 | 39.362 | 94 | 55 | 2 | 38 | 129 | 242 | 335 | 3.35e-12 | 65.1 |
| Msa0913060 | AT3G14300.1 | 37.168 | 113 | 67 | 3 | 19 | 129 | 630 | 740 | 6.75e-12 | 64.3 |
| Msa0913060 | AT5G01510.1 | 77.143 | 35 | 8 | 0 | 177 | 211 | 127 | 161 | 5.51e-11 | 61.6 |
Find 49 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCATAGAAAACCATTT+TGG | 0.206714 | 6_2:-22942169 | None:intergenic |
| CTGGTGGACACAATGTTATT+TGG | 0.218175 | 6_2:+22943727 | Msa0913060:CDS |
| ACTTCTAGAGCTTGTTATTA+TGG | 0.221969 | 6_2:-22942416 | None:intergenic |
| TGGTGGACACAATGTTATTT+GGG | 0.250228 | 6_2:+22943728 | Msa0913060:CDS |
| AACAGAAGTCATTTCCAAAA+TGG | 0.257708 | 6_2:+22942155 | Msa0913060:CDS |
| ACCACAAGATTGTACTTTAC+TGG | 0.268962 | 6_2:-22942217 | None:intergenic |
| ACATATCCATCCAGTCAAAT+TGG | 0.361874 | 6_2:-22944100 | None:intergenic |
| AGGACACCTCTGATGCAAAT+TGG | 0.399529 | 6_2:-22940569 | None:intergenic |
| AATAGGTGCCGCCATTTGTT+GGG | 0.408378 | 6_2:+22943141 | Msa0913060:intron |
| AAATAGGTGCCGCCATTTGT+TGG | 0.420937 | 6_2:+22943140 | Msa0913060:intron |
| GAGAGGGACGAAAGAGAGAA+AGG | 0.428730 | 6_2:+22940505 | Msa0913060:five_prime_UTR |
| TTAGATGGACAATGGATTTG+AGG | 0.430824 | 6_2:+22941066 | Msa0913060:intron |
| TTGAAAATTTAGATGGACAA+TGG | 0.453902 | 6_2:+22941058 | Msa0913060:intron |
| ACAAGCTCTAGAAGTGTTCA+AGG | 0.461415 | 6_2:+22942424 | Msa0913060:CDS |
| AACATTATGTTGGTTGGTGA+TGG | 0.482195 | 6_2:+22942382 | Msa0913060:CDS |
| ATTGTACTTTACTGGAGACT+TGG | 0.493638 | 6_2:-22942209 | None:intergenic |
| TCCCTACCAATTTGACTGGA+TGG | 0.498477 | 6_2:+22944094 | Msa0913060:CDS |
| AATCTTGTGGTGGCAAAAGA+TGG | 0.499071 | 6_2:+22942229 | Msa0913060:CDS |
| TCATAATGATAACATTATGT+TGG | 0.502752 | 6_2:+22942372 | Msa0913060:CDS |
| CAGTTCCCTACCAATTTGAC+TGG | 0.505618 | 6_2:+22944090 | Msa0913060:CDS |
| CGTCAGATCAAGTCTACTAA+AGG | 0.513328 | 6_2:+22944131 | Msa0913060:CDS |
| AATGATAACATTATGTTGGT+TGG | 0.527056 | 6_2:+22942376 | Msa0913060:CDS |
| GAGGGTCGACGGAGAGGAGA+GGG | 0.527471 | 6_2:+22940489 | None:intergenic |
| ACAAGCAGCTTCTGATATGA+TGG | 0.532447 | 6_2:+22941093 | Msa0913060:CDS |
| AGAACAGCAATGTATGCTAA+AGG | 0.541920 | 6_2:+22943184 | Msa0913060:CDS |
| TGCTGTTGCAGAGCTATAAG+TGG | 0.543731 | 6_2:-22942455 | None:intergenic |
| ATTGGTGCAGATCGGAGTGT+TGG | 0.548682 | 6_2:-22940551 | None:intergenic |
| GTGGTGGCAAAAGATGGTTC+TGG | 0.550327 | 6_2:+22942235 | Msa0913060:CDS |
| ATCCATCCAGTCAAATTGGT+AGG | 0.553123 | 6_2:-22944096 | None:intergenic |
| ATGGACAATGGATTTGAGGA+TGG | 0.554723 | 6_2:+22941070 | Msa0913060:CDS |
| AGAGGGACGAAAGAGAGAAA+GGG | 0.556648 | 6_2:+22940506 | Msa0913060:five_prime_UTR |
| ACTTATAGCTCTGCAACAGC+AGG | 0.557059 | 6_2:+22942457 | Msa0913060:CDS |
| TACATTGCTGTTCTTAATAG+CGG | 0.559280 | 6_2:-22943175 | None:intergenic |
| AGAGGGTCGACGGAGAGGAG+AGG | 0.575888 | 6_2:+22940488 | None:intergenic |
| TCCATCCAGTCAAATTGGTA+GGG | 0.576407 | 6_2:-22944095 | None:intergenic |
| CAAATAACATTGTGTCCACC+AGG | 0.577263 | 6_2:-22943726 | None:intergenic |
| TGATGCAAATTGGTGCAGAT+CGG | 0.584880 | 6_2:-22940559 | None:intergenic |
| TCTGCACCAATTTGCATCAG+AGG | 0.590751 | 6_2:+22940563 | Msa0913060:five_prime_UTR |
| GGTGGACACAATGTTATTTG+GGG | 0.591154 | 6_2:+22943729 | Msa0913060:CDS |
| GTGTTGGACGGCGAGATCGA+CGG | 0.595407 | 6_2:-22940535 | None:intergenic |
| ATTTCTGGAAGACAATCTCC+TGG | 0.602887 | 6_2:+22943708 | Msa0913060:CDS |
| TCCAGTAAAGTACAATCTTG+TGG | 0.603808 | 6_2:+22942216 | Msa0913060:CDS |
| GGTTTATAGAGAGAACATTG+AGG | 0.618054 | 6_2:+22942342 | Msa0913060:CDS |
| GTGCAGATCGGAGTGTTGGA+CGG | 0.631632 | 6_2:-22940547 | None:intergenic |
| CAGAGAGAGGGTCGACGGAG+AGG | 0.631931 | 6_2:+22940483 | None:intergenic |
| TCTGGAAGACAATCTCCTGG+TGG | 0.701176 | 6_2:+22943711 | Msa0913060:CDS |
| TGATGGCAAGCAGTCAACAG+AGG | 0.701292 | 6_2:+22941110 | Msa0913060:CDS |
| AGTAAAGTACAATCTTGTGG+TGG | 0.701399 | 6_2:+22942219 | Msa0913060:CDS |
| AGCTCTAGAAGTGTTCAAGG+AGG | 0.721005 | 6_2:+22942427 | Msa0913060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTAAATGATGATTTT+AGG | - | chr6_2:22942751-22942770 | None:intergenic | 10.0% |
| !!! | AAGATATTTTTTATAACATT+TGG | - | chr6_2:22944317-22944336 | None:intergenic | 10.0% |
| !! | TGTAAATAACAAATAAGTAA+TGG | - | chr6_2:22941026-22941045 | None:intergenic | 15.0% |
| !!! | CATCTAAATTTTCAATAAAA+GGG | - | chr6_2:22941053-22941072 | None:intergenic | 15.0% |
| !! | ATTATCATTAACTGTAAATT+TGG | - | chr6_2:22942048-22942067 | None:intergenic | 15.0% |
| !! | TATTCAGTCAAAATTAATTT+AGG | + | chr6_2:22944387-22944406 | Msa0913060:intron | 15.0% |
| !! | ATTCAGTCAAAATTAATTTA+GGG | + | chr6_2:22944388-22944407 | Msa0913060:intron | 15.0% |
| !! | AATTATTAAACTAATGAGAA+AGG | - | chr6_2:22944793-22944812 | None:intergenic | 15.0% |
| !!! | ATGTTCAAGTATTTTTTTTC+TGG | + | chr6_2:22940643-22940662 | Msa0913060:intron | 20.0% |
| !!! | TGTTCAAGTATTTTTTTTCT+GGG | + | chr6_2:22940644-22940663 | Msa0913060:intron | 20.0% |
| !!! | TTAAGGAAATTTATGCTTTT+AGG | + | chr6_2:22940667-22940686 | Msa0913060:intron | 20.0% |
| !!! | TGTATCTTTGATTTTAATTG+AGG | + | chr6_2:22940770-22940789 | Msa0913060:intron | 20.0% |
| !!! | GTATCTTTGATTTTAATTGA+GGG | + | chr6_2:22940771-22940790 | Msa0913060:intron | 20.0% |
| !! | TTAGTATGAGATAGAAATAA+TGG | + | chr6_2:22940905-22940924 | Msa0913060:intron | 20.0% |
| !! | TAGTATGAGATAGAAATAAT+GGG | + | chr6_2:22940906-22940925 | Msa0913060:intron | 20.0% |
| !!! | CCATCTAAATTTTCAATAAA+AGG | - | chr6_2:22941054-22941073 | None:intergenic | 20.0% |
| !!! | CCTTTTATTGAAAATTTAGA+TGG | + | chr6_2:22941051-22941070 | Msa0913060:intron | 20.0% |
| !! | GAACACAAAATATATAATCA+AGG | - | chr6_2:22941342-22941361 | None:intergenic | 20.0% |
| !!! | ATTGTTTGTGATTTTGTTTT+TGG | + | chr6_2:22941394-22941413 | Msa0913060:intron | 20.0% |
| !! | TTTGTGAAATTGACTAAAAT+TGG | + | chr6_2:22941519-22941538 | Msa0913060:intron | 20.0% |
| !!! | TTTGATGACTTAAAAATTGA+TGG | + | chr6_2:22941560-22941579 | Msa0913060:intron | 20.0% |
| !! | AATATTGAAACATGTAAAAG+TGG | + | chr6_2:22941796-22941815 | Msa0913060:intron | 20.0% |
| !! | TCATAATGATAACATTATGT+TGG | + | chr6_2:22942372-22942391 | Msa0913060:CDS | 20.0% |
| !! | AGGTTTCAATTATTAAGAAT+TGG | + | chr6_2:22943013-22943032 | Msa0913060:intron | 20.0% |
| !! | GGTTTCAATTATTAAGAATT+GGG | + | chr6_2:22943014-22943033 | Msa0913060:intron | 20.0% |
| !! | GTTTCAATTATTAAGAATTG+GGG | + | chr6_2:22943015-22943034 | Msa0913060:intron | 20.0% |
| !! | CCTTAAGTATTATAAAATGT+TGG | - | chr6_2:22943265-22943284 | None:intergenic | 20.0% |
| !!! | CCAACATTTTATAATACTTA+AGG | + | chr6_2:22943262-22943281 | Msa0913060:intron | 20.0% |
| !!! | ATTTTTTTTAGAGGTATTTC+TGG | + | chr6_2:22943693-22943712 | Msa0913060:intron | 20.0% |
| !! | ATAGAGAATTATAAGTAAAC+AGG | - | chr6_2:22944023-22944042 | None:intergenic | 20.0% |
| !!! | GAGTATTTGATTAGTTTTTA+TGG | + | chr6_2:22944205-22944224 | Msa0913060:intron | 20.0% |
| !!! | ATTTGATTAGTTTTTATGGT+TGG | + | chr6_2:22944209-22944228 | Msa0913060:intron | 20.0% |
| !! | TTCAGTCAAAATTAATTTAG+GGG | + | chr6_2:22944389-22944408 | Msa0913060:intron | 20.0% |
| !!! | TAGATCATTTTGATATATGT+TGG | + | chr6_2:22944465-22944484 | Msa0913060:intron | 20.0% |
| !!! | AGATCATTTTGATATATGTT+GGG | + | chr6_2:22944466-22944485 | Msa0913060:intron | 20.0% |
| !!! | GTTTTTGATCAATGATAAAA+GGG | + | chr6_2:22944488-22944507 | Msa0913060:intron | 20.0% |
| !!! | TTTTTGATCAATGATAAAAG+GGG | + | chr6_2:22944489-22944508 | Msa0913060:intron | 20.0% |
| !! | AATGTAACTCAAAAAAAAAG+GGG | - | chr6_2:22944743-22944762 | None:intergenic | 20.0% |
| !! | GAATGTAACTCAAAAAAAAA+GGG | - | chr6_2:22944744-22944763 | None:intergenic | 20.0% |
| !! | AGAATGTAACTCAAAAAAAA+AGG | - | chr6_2:22944745-22944764 | None:intergenic | 20.0% |
| !! | ATCAAAAAAATAACTGAAGA+AGG | - | chr6_2:22944971-22944990 | None:intergenic | 20.0% |
| ! | AAACAAAAGATTAGATGAAG+AGG | - | chr6_2:22940592-22940611 | None:intergenic | 25.0% |
| ! | TGAACATGCAAACAAAATTA+AGG | - | chr6_2:22940630-22940649 | None:intergenic | 25.0% |
| !!! | AGTATTTTTTTTCTGGGTTA+AGG | + | chr6_2:22940650-22940669 | Msa0913060:intron | 25.0% |
| !!! | TTTGATAATGCTAATGTTTG+TGG | + | chr6_2:22940716-22940735 | Msa0913060:intron | 25.0% |
| !!! | CAAATTTTTTCACTTCTTTG+TGG | - | chr6_2:22940865-22940884 | None:intergenic | 25.0% |
| ! | ATTTGAGAGTGAAGAAATAA+TGG | + | chr6_2:22940880-22940899 | Msa0913060:intron | 25.0% |
| ! | TTTGAGAGTGAAGAAATAAT+GGG | + | chr6_2:22940881-22940900 | Msa0913060:intron | 25.0% |
| !!! | GAAGTATCTTTTGGTTTTTT+TGG | + | chr6_2:22940933-22940952 | Msa0913060:intron | 25.0% |
| ! | TTGAAAATTTAGATGGACAA+TGG | + | chr6_2:22941058-22941077 | Msa0913060:intron | 25.0% |
| !! | TTTGAATCTGATTTGCAATT+AGG | + | chr6_2:22941369-22941388 | Msa0913060:intron | 25.0% |
| !!! | TTTTGAGATTAAATCTCACT+TGG | + | chr6_2:22941476-22941495 | Msa0913060:intron | 25.0% |
| !! | TGAAGTATCTTCAATTCTTT+CGG | + | chr6_2:22941982-22942001 | Msa0913060:intron | 25.0% |
| ! | AATGATAACATTATGTTGGT+TGG | + | chr6_2:22942376-22942395 | Msa0913060:CDS | 25.0% |
| !!! | TTATGTTCTTGCTATGATTT+TGG | + | chr6_2:22942503-22942522 | Msa0913060:intron | 25.0% |
| ! | ATTAATTCATTACTGCCTAT+TGG | - | chr6_2:22942537-22942556 | None:intergenic | 25.0% |
| ! | AATCACTCTAAATATGTAGT+GGG | - | chr6_2:22942777-22942796 | None:intergenic | 25.0% |
| ! | AAATCACTCTAAATATGTAG+TGG | - | chr6_2:22942778-22942797 | None:intergenic | 25.0% |
| ! | ATAGTTAGTAAGAACAAGAA+AGG | + | chr6_2:22942816-22942835 | Msa0913060:intron | 25.0% |
| !! | TTTAGGGTTTCATGAAAATT+GGG | + | chr6_2:22942852-22942871 | Msa0913060:intron | 25.0% |
| ! | AATTATTAAGAATTGGGGTT+TGG | + | chr6_2:22943020-22943039 | Msa0913060:intron | 25.0% |
| ! | CATAGAAATATGTTTGTTCT+TGG | + | chr6_2:22943070-22943089 | Msa0913060:intron | 25.0% |
| ! | ATCAAATGACAAAAACACAA+AGG | - | chr6_2:22943223-22943242 | None:intergenic | 25.0% |
| ! | AAACTATTTAGGCAAACTTA+TGG | + | chr6_2:22943314-22943333 | Msa0913060:intron | 25.0% |
| !! | AATAGCAATAAGTTGAAAAC+AGG | - | chr6_2:22943370-22943389 | None:intergenic | 25.0% |
| !!! | GTAATTTTTTTAGTGCTTCA+AGG | + | chr6_2:22943565-22943584 | Msa0913060:intron | 25.0% |
| !!! | CTTGTGGTAATTTTTTTTAG+AGG | + | chr6_2:22943684-22943703 | Msa0913060:intron | 25.0% |
| ! | TATAATTCTCTATATGATGC+AGG | + | chr6_2:22944030-22944049 | Msa0913060:intron | 25.0% |
| !! | GGAAATCAATACTATACTTT+TGG | - | chr6_2:22944351-22944370 | None:intergenic | 25.0% |
| ! | TCAGTCAAAATTAATTTAGG+GGG | + | chr6_2:22944390-22944409 | Msa0913060:intron | 25.0% |
| !!! | TAATTTAGGGGGTATATTTT+AGG | + | chr6_2:22944401-22944420 | Msa0913060:intron | 25.0% |
| ! | AAAATGATCTATAGTGCTAA+GGG | - | chr6_2:22944456-22944475 | None:intergenic | 25.0% |
| !! | GGTTTTTGATCAATGATAAA+AGG | + | chr6_2:22944487-22944506 | Msa0913060:intron | 25.0% |
| !! | TTTTGATCAATGATAAAAGG+GGG | + | chr6_2:22944490-22944509 | Msa0913060:intron | 25.0% |
| ! | AAACAACTATGGTTCATATT+GGG | - | chr6_2:22944620-22944639 | None:intergenic | 25.0% |
| ! | AAAACAACTATGGTTCATAT+TGG | - | chr6_2:22944621-22944640 | None:intergenic | 25.0% |
| ! | TCAAAAGAACAAAACAACTA+TGG | - | chr6_2:22944631-22944650 | None:intergenic | 25.0% |
| !! | TGTTCTTTTGATCTCTATTA+TGG | + | chr6_2:22944640-22944659 | Msa0913060:intron | 25.0% |
| !!! | TTCATGTCATTTTCAGAATT+TGG | + | chr6_2:22944690-22944709 | Msa0913060:intron | 25.0% |
| !!! | TTTTTGAGTTACATTCTTGA+TGG | + | chr6_2:22944748-22944767 | Msa0913060:intron | 25.0% |
| ! | ATGAGAAAGGTTACAATAAA+AGG | - | chr6_2:22944780-22944799 | None:intergenic | 25.0% |
| ! | TCGTTTAATTAGTTGTTCAA+AGG | - | chr6_2:22944843-22944862 | None:intergenic | 25.0% |
| !!! | TAAACGATTAGTTTTCTTCT+TGG | + | chr6_2:22944856-22944875 | Msa0913060:intron | 25.0% |
| !!! | TTTGATTTTAATTGAGGGTC+TGG | + | chr6_2:22940776-22940795 | Msa0913060:intron | 30.0% |
| !!! | ATGGGTTTAGAAGTATCTTT+TGG | + | chr6_2:22940924-22940943 | Msa0913060:intron | 30.0% |
| ACTTTCACAGTGATTTAGTT+AGG | + | chr6_2:22941232-22941251 | Msa0913060:intron | 30.0% | |
| TAGGAGCTGAAAACTAAATT+TGG | + | chr6_2:22941251-22941270 | Msa0913060:intron | 30.0% | |
| ! | ATGCTTCTGATCCTTTTATT+TGG | + | chr6_2:22941312-22941331 | Msa0913060:intron | 30.0% |
| !! | TGCTTCTGATCCTTTTATTT+GGG | + | chr6_2:22941313-22941332 | Msa0913060:intron | 30.0% |
| TGTGTTTATGCAAATCATTG+AGG | + | chr6_2:22941667-22941686 | Msa0913060:intron | 30.0% | |
| TTTCAGGAAATGCATATTGA+TGG | - | chr6_2:22941899-22941918 | None:intergenic | 30.0% | |
| CATTTCCTGAAAAATAACGA+AGG | + | chr6_2:22941907-22941926 | Msa0913060:intron | 30.0% | |
| !!! | TAGTACCTTCGTTATTTTTC+AGG | - | chr6_2:22941915-22941934 | None:intergenic | 30.0% |
| GTCATACTAATCTAAACTTG+TGG | + | chr6_2:22942116-22942135 | Msa0913060:intron | 30.0% | |
| AACAGAAGTCATTTCCAAAA+TGG | + | chr6_2:22942155-22942174 | Msa0913060:CDS | 30.0% | |
| ! | TCATGCATAGAAAACCATTT+TGG | - | chr6_2:22942172-22942191 | None:intergenic | 30.0% |
| ! | AATGGTTTTCTATGCATGAA+AGG | + | chr6_2:22942173-22942192 | Msa0913060:CDS | 30.0% |
| TTTGTGATACATGTGAAGAA+AGG | + | chr6_2:22942319-22942338 | Msa0913060:intron | 30.0% | |
| TTGTGATACATGTGAAGAAA+GGG | + | chr6_2:22942320-22942339 | Msa0913060:intron | 30.0% | |
| !! | ACTTCTAGAGCTTGTTATTA+TGG | - | chr6_2:22942419-22942438 | None:intergenic | 30.0% |
| TCATAGCAAGAACATAAAAC+AGG | - | chr6_2:22942500-22942519 | None:intergenic | 30.0% | |
| !!! | ATGATGATTTTAGGTTTGCA+TGG | - | chr6_2:22942742-22942761 | None:intergenic | 30.0% |
| AAGGAGAAGAATTGAAGTTT+AGG | + | chr6_2:22942835-22942854 | Msa0913060:intron | 30.0% | |
| AGGAGAAGAATTGAAGTTTA+GGG | + | chr6_2:22942836-22942855 | Msa0913060:intron | 30.0% | |
| ! | GTTTAGGGTTTCATGAAAAT+TGG | + | chr6_2:22942851-22942870 | Msa0913060:intron | 30.0% |
| TTAGGGTTTCATGAAAATTG+GGG | + | chr6_2:22942853-22942872 | Msa0913060:intron | 30.0% | |
| AAAAGCTAGAGTTAGAAGAA+AGG | + | chr6_2:22942877-22942896 | Msa0913060:intron | 30.0% | |
| ! | TGTTTGTTCTTGGTTGATTT+AGG | + | chr6_2:22943080-22943099 | Msa0913060:intron | 30.0% |
| ! | TACATTGCTGTTCTTAATAG+CGG | - | chr6_2:22943178-22943197 | None:intergenic | 30.0% |
| TCATTTGATTACACCCTATT+TGG | + | chr6_2:22943234-22943253 | Msa0913060:intron | 30.0% | |
| AATGTTGGTCATTCCAAATA+GGG | - | chr6_2:22943250-22943269 | None:intergenic | 30.0% | |
| AAATGTTGGTCATTCCAAAT+AGG | - | chr6_2:22943251-22943270 | None:intergenic | 30.0% | |
| TTGAGCTTGTGAAACTATTT+AGG | + | chr6_2:22943303-22943322 | Msa0913060:intron | 30.0% | |
| TTTAGGCAAACTTATGGAAT+TGG | + | chr6_2:22943320-22943339 | Msa0913060:intron | 30.0% | |
| ! | CTTATTGCTATTAACTCTCT+AGG | + | chr6_2:22943378-22943397 | Msa0913060:intron | 30.0% |
| TTAAGATGTTCATCCAAACA+GGG | + | chr6_2:22943495-22943514 | Msa0913060:intron | 30.0% | |
| TTTATCATAGCAATATCCTG+TGG | + | chr6_2:22943610-22943629 | Msa0913060:intron | 30.0% | |
| ACTATGATAAAATTGACCAC+AGG | - | chr6_2:22943629-22943648 | None:intergenic | 30.0% | |
| CTTCATAGTAATATCTCTTG+TGG | + | chr6_2:22943668-22943687 | Msa0913060:intron | 30.0% | |
| ! | AGTGTTTTGCTTGAACTTAT+TGG | + | chr6_2:22943786-22943805 | Msa0913060:intron | 30.0% |
| TATCAAAGACCAAAATTGCA+CGG | + | chr6_2:22943947-22943966 | Msa0913060:intron | 30.0% | |
| ! | TTTTTATAACATTTGGCCGT+AGG | - | chr6_2:22944310-22944329 | None:intergenic | 30.0% |
| GAATACTATACACAGAGATT+AGG | - | chr6_2:22944372-22944391 | None:intergenic | 30.0% | |
| CAAAATGATCTATAGTGCTA+AGG | - | chr6_2:22944457-22944476 | None:intergenic | 30.0% | |
| GGGTGTAAGCTAAAAATTAA+AGG | + | chr6_2:22944510-22944529 | Msa0913060:intron | 30.0% | |
| TAATCTTGGGAAATATGCAT+TGG | + | chr6_2:22944560-22944579 | Msa0913060:intron | 30.0% | |
| AATCTTGGGAAATATGCATT+GGG | + | chr6_2:22944561-22944580 | Msa0913060:intron | 30.0% | |
| ! | AAATGACATGAAGATTTGGT+AGG | - | chr6_2:22944682-22944701 | None:intergenic | 30.0% |
| CTGAAAATGACATGAAGATT+TGG | - | chr6_2:22944686-22944705 | None:intergenic | 30.0% | |
| TAACTCAAAAAAAAAGGGGT+GGG | - | chr6_2:22944739-22944758 | None:intergenic | 30.0% | |
| AGAAAGGTTACAATAAAAGG+TGG | - | chr6_2:22944777-22944796 | None:intergenic | 30.0% | |
| ! | TTAGATGGACAATGGATTTG+AGG | + | chr6_2:22941066-22941085 | Msa0913060:intron | 35.0% |
| CAGTCAACAGAGGAAAAAAA+GGG | + | chr6_2:22941120-22941139 | Msa0913060:CDS | 35.0% | |
| ATCAAGGACTCCCAAATAAA+AGG | - | chr6_2:22941326-22941345 | None:intergenic | 35.0% | |
| AAATCCTGCAAAACATGTGT+GGG | - | chr6_2:22941600-22941619 | None:intergenic | 35.0% | |
| GCAAACTATATAACACTCTC+TGG | - | chr6_2:22941628-22941647 | None:intergenic | 35.0% | |
| GACCAAATGATGTACAAACA+TGG | + | chr6_2:22941755-22941774 | Msa0913060:intron | 35.0% | |
| AGCCATGTTTGTACATCATT+TGG | - | chr6_2:22941760-22941779 | None:intergenic | 35.0% | |
| CCTTATCATCTCAATGACAT+TGG | - | chr6_2:22941866-22941885 | None:intergenic | 35.0% | |
| CCAATGTCATTGAGATGATA+AGG | + | chr6_2:22941863-22941882 | Msa0913060:intron | 35.0% | |
| ATTGTACTTTACTGGAGACT+TGG | - | chr6_2:22942212-22942231 | None:intergenic | 35.0% | |
| TCCAGTAAAGTACAATCTTG+TGG | + | chr6_2:22942216-22942235 | Msa0913060:CDS | 35.0% | |
| ACCACAAGATTGTACTTTAC+TGG | - | chr6_2:22942220-22942239 | None:intergenic | 35.0% | |
| AGTAAAGTACAATCTTGTGG+TGG | + | chr6_2:22942219-22942238 | Msa0913060:CDS | 35.0% | |
| TGTGATACATGTGAAGAAAG+GGG | + | chr6_2:22942321-22942340 | Msa0913060:intron | 35.0% | |
| GGTTTATAGAGAGAACATTG+AGG | + | chr6_2:22942342-22942361 | Msa0913060:CDS | 35.0% | |
| !! | AACATTATGTTGGTTGGTGA+TGG | + | chr6_2:22942382-22942401 | Msa0913060:CDS | 35.0% |
| !! | TGTTCTTGCTATGATTTTGG+CGG | + | chr6_2:22942506-22942525 | Msa0913060:intron | 35.0% |
| AATTCATTACTGCCTATTGG+TGG | - | chr6_2:22942534-22942553 | None:intergenic | 35.0% | |
| ! | GATTTTGTCAAGGGGAAAAA+TGG | - | chr6_2:22942718-22942737 | None:intergenic | 35.0% |
| ! | TTGCATGGTGATTTTGTCAA+GGG | - | chr6_2:22942727-22942746 | None:intergenic | 35.0% |
| ! | TTTGCATGGTGATTTTGTCA+AGG | - | chr6_2:22942728-22942747 | None:intergenic | 35.0% |
| TAGAGTTAGAAGAAAGGCTA+GGG | + | chr6_2:22942883-22942902 | Msa0913060:intron | 35.0% | |
| ! | ATTCCTCATACTTTGGGTTA+AGG | + | chr6_2:22942993-22943012 | Msa0913060:intron | 35.0% |
| AAACCTTAACCCAAAGTATG+AGG | - | chr6_2:22942999-22943018 | None:intergenic | 35.0% | |
| !!! | TGATTTTGTTTGTTGTTGCC+TGG | + | chr6_2:22943115-22943134 | Msa0913060:intron | 35.0% |
| ! | TTGTTGTTGCCTGGAAAAAT+AGG | + | chr6_2:22943124-22943143 | Msa0913060:intron | 35.0% |
| !!! | CATCTTGTTTTCCCAACAAA+TGG | - | chr6_2:22943155-22943174 | None:intergenic | 35.0% |
| AGAACAGCAATGTATGCTAA+AGG | + | chr6_2:22943184-22943203 | Msa0913060:CDS | 35.0% | |
| GTTAAGATGTTCATCCAAAC+AGG | + | chr6_2:22943494-22943513 | Msa0913060:intron | 35.0% | |
| CACTAAAAAAATTACCCACG+TGG | - | chr6_2:22943560-22943579 | None:intergenic | 35.0% | |
| GCTATGATAAAATTGACCAC+AGG | - | chr6_2:22943601-22943620 | None:intergenic | 35.0% | |
| ! | TGGTGGACACAATGTTATTT+GGG | + | chr6_2:22943728-22943747 | Msa0913060:CDS | 35.0% |
| ! | CTTCATCGATTAGATGAAGT+TGG | + | chr6_2:22943990-22944009 | Msa0913060:intron | 35.0% |
| ATCGATTAGATGAAGTTGGA+GGG | + | chr6_2:22943994-22944013 | Msa0913060:intron | 35.0% | |
| ACATATCCATCCAGTCAAAT+TGG | - | chr6_2:22944103-22944122 | None:intergenic | 35.0% | |
| AAGATTAAAGTAACCCCAAC+TGG | - | chr6_2:22944547-22944566 | None:intergenic | 35.0% | |
| ! | AGTTGGGGTTACTTTAATCT+TGG | + | chr6_2:22944546-22944565 | Msa0913060:intron | 35.0% |
| ! | GTTGGGGTTACTTTAATCTT+GGG | + | chr6_2:22944547-22944566 | Msa0913060:intron | 35.0% |
| ATCTTGGGAAATATGCATTG+GGG | + | chr6_2:22944562-22944581 | Msa0913060:intron | 35.0% | |
| GTAACTCAAAAAAAAAGGGG+TGG | - | chr6_2:22944740-22944759 | None:intergenic | 35.0% | |
| ! | TCTTCTTGGTCTTCAGAAAT+TGG | + | chr6_2:22944870-22944889 | Msa0913060:intron | 35.0% |
| TGATGCAAATTGGTGCAGAT+CGG | - | chr6_2:22940562-22940581 | None:intergenic | 40.0% | |
| !!! | AGGGTCTGGTCTTTTGATTT+TGG | + | chr6_2:22940790-22940809 | Msa0913060:intron | 40.0% |
| !!! | GGGTCTGGTCTTTTGATTTT+GGG | + | chr6_2:22940791-22940810 | Msa0913060:intron | 40.0% |
| ! | ATGGACAATGGATTTGAGGA+TGG | + | chr6_2:22941070-22941089 | Msa0913060:CDS | 40.0% |
| ACAAGCAGCTTCTGATATGA+TGG | + | chr6_2:22941093-22941112 | Msa0913060:CDS | 40.0% | |
| GCAGTCAACAGAGGAAAAAA+AGG | + | chr6_2:22941119-22941138 | Msa0913060:CDS | 40.0% | |
| AATCACTGTGAAAGTGAGAG+TGG | - | chr6_2:22941227-22941246 | None:intergenic | 40.0% | |
| ! | CTTGGTGTAAATTGCACACA+AGG | + | chr6_2:22941494-22941513 | Msa0913060:intron | 40.0% |
| ATGTGTGGGTGAATTCTAGA+AGG | - | chr6_2:22941586-22941605 | None:intergenic | 40.0% | |
| CAAATCCTGCAAAACATGTG+TGG | - | chr6_2:22941601-22941620 | None:intergenic | 40.0% | |
| ! | TACTTGTGATGCAGAGGTTT+TGG | + | chr6_2:22941698-22941717 | Msa0913060:intron | 40.0% |
| !!! | ATGCAGAGGTTTTGGTTTCA+GGG | + | chr6_2:22941706-22941725 | Msa0913060:intron | 40.0% |
| AATCTTGTGGTGGCAAAAGA+TGG | + | chr6_2:22942229-22942248 | Msa0913060:CDS | 40.0% | |
| !! | ACAAGCTCTAGAAGTGTTCA+AGG | + | chr6_2:22942424-22942443 | Msa0913060:CDS | 40.0% |
| TCTCTGTGTACGTATCAACA+AGG | + | chr6_2:22942677-22942696 | Msa0913060:intron | 40.0% | |
| ! | TGCATGGTGATTTTGTCAAG+GGG | - | chr6_2:22942726-22942745 | None:intergenic | 40.0% |
| CTAGAGTTAGAAGAAAGGCT+AGG | + | chr6_2:22942882-22942901 | Msa0913060:intron | 40.0% | |
| GAAGAAAGGCTAGGGATTTA+AGG | + | chr6_2:22942891-22942910 | Msa0913060:intron | 40.0% | |
| GATTTAAGGAAGCTTGGAGT+AGG | + | chr6_2:22942905-22942924 | Msa0913060:intron | 40.0% | |
| ATCTCCCTAGAAATCAAGGT+GGG | + | chr6_2:22942957-22942976 | Msa0913060:intron | 40.0% | |
| AGTATGAGGAATGAGGGAAA+GGG | - | chr6_2:22942985-22943004 | None:intergenic | 40.0% | |
| AAGTATGAGGAATGAGGGAA+AGG | - | chr6_2:22942986-22943005 | None:intergenic | 40.0% | |
| TTCCCTCATTCCTCATACTT+TGG | + | chr6_2:22942986-22943005 | Msa0913060:intron | 40.0% | |
| TCCCTCATTCCTCATACTTT+GGG | + | chr6_2:22942987-22943006 | Msa0913060:intron | 40.0% | |
| ACCCAAAGTATGAGGAATGA+GGG | - | chr6_2:22942991-22943010 | None:intergenic | 40.0% | |
| AACCCAAAGTATGAGGAATG+AGG | - | chr6_2:22942992-22943011 | None:intergenic | 40.0% | |
| !! | CTTGTTTTCCCAACAAATGG+CGG | - | chr6_2:22943152-22943171 | None:intergenic | 40.0% |
| TTATCCAAAAAGGCCCTGTT+TGG | - | chr6_2:22943511-22943530 | None:intergenic | 40.0% | |
| TGAGGGGAGTTTATCCAAAA+AGG | - | chr6_2:22943521-22943540 | None:intergenic | 40.0% | |
| CAATATCTAATGCTGCTGAG+GGG | - | chr6_2:22943537-22943556 | None:intergenic | 40.0% | |
| GCAATATCTAATGCTGCTGA+GGG | - | chr6_2:22943538-22943557 | None:intergenic | 40.0% | |
| AGCATTAGATATTGCCACGT+GGG | + | chr6_2:22943543-22943562 | Msa0913060:intron | 40.0% | |
| !!! | TCAAGGTATTTTAGCACCTG+TGG | + | chr6_2:22943582-22943601 | Msa0913060:intron | 40.0% |
| ! | ATTTCTGGAAGACAATCTCC+TGG | + | chr6_2:22943708-22943727 | Msa0913060:CDS | 40.0% |
| CAAATAACATTGTGTCCACC+AGG | - | chr6_2:22943729-22943748 | None:intergenic | 40.0% | |
| ! | CTGGTGGACACAATGTTATT+TGG | + | chr6_2:22943727-22943746 | Msa0913060:CDS | 40.0% |
| ! | GGTGGACACAATGTTATTTG+GGG | + | chr6_2:22943729-22943748 | Msa0913060:CDS | 40.0% |
| ! | GACATTTCTCCGTGCAATTT+TGG | - | chr6_2:22943959-22943978 | None:intergenic | 40.0% |
| ! | CATCGATTAGATGAAGTTGG+AGG | + | chr6_2:22943993-22944012 | Msa0913060:intron | 40.0% |
| TCCATCCAGTCAAATTGGTA+GGG | - | chr6_2:22944098-22944117 | None:intergenic | 40.0% | |
| ATCCATCCAGTCAAATTGGT+AGG | - | chr6_2:22944099-22944118 | None:intergenic | 40.0% | |
| CGTCAGATCAAGTCTACTAA+AGG | + | chr6_2:22944131-22944150 | Msa0913060:CDS | 40.0% | |
| TCTCATTGTGCATGTCAATG+AGG | + | chr6_2:22944284-22944303 | Msa0913060:intron | 40.0% | |
| !! | AGGGGGTATATTTTAGGCAA+TGG | + | chr6_2:22944407-22944426 | Msa0913060:intron | 40.0% |
| !! | GGGGGTATATTTTAGGCAAT+GGG | + | chr6_2:22944408-22944427 | Msa0913060:intron | 40.0% |
| !! | GGGGTATATTTTAGGCAATG+GGG | + | chr6_2:22944409-22944428 | Msa0913060:intron | 40.0% |
| !! | GGGTATATTTTAGGCAATGG+GGG | + | chr6_2:22944410-22944429 | Msa0913060:intron | 40.0% |
| AAGGCAAAAGTTATGCCAGT+TGG | + | chr6_2:22944529-22944548 | Msa0913060:intron | 40.0% | |
| AGGCAAAAGTTATGCCAGTT+GGG | + | chr6_2:22944530-22944549 | Msa0913060:intron | 40.0% | |
| ! | TGACATGAAGATTTGGTAGG+AGG | - | chr6_2:22944679-22944698 | None:intergenic | 40.0% |
| AGAGGGACGAAAGAGAGAAA+GGG | + | chr6_2:22940506-22940525 | Msa0913060:five_prime_UTR | 45.0% | |
| TCTGCACCAATTTGCATCAG+AGG | + | chr6_2:22940563-22940582 | Msa0913060:five_prime_UTR | 45.0% | |
| AGGACACCTCTGATGCAAAT+TGG | - | chr6_2:22940572-22940591 | None:intergenic | 45.0% | |
| TGTGAAAGTGAGAGTGGTGA+TGG | - | chr6_2:22941221-22941240 | None:intergenic | 45.0% | |
| ! | TTCACCCACACATGTTTTGC+AGG | + | chr6_2:22941593-22941612 | Msa0913060:intron | 45.0% |
| !!! | GATGCAGAGGTTTTGGTTTC+AGG | + | chr6_2:22941705-22941724 | Msa0913060:intron | 45.0% |
| !! | AGCTCTAGAAGTGTTCAAGG+AGG | + | chr6_2:22942427-22942446 | Msa0913060:CDS | 45.0% |
| TGCTGTTGCAGAGCTATAAG+TGG | - | chr6_2:22942458-22942477 | None:intergenic | 45.0% | |
| ! | ACTTATAGCTCTGCAACAGC+AGG | + | chr6_2:22942457-22942476 | Msa0913060:CDS | 45.0% |
| GCTAGGGATTTAAGGAAGCT+TGG | + | chr6_2:22942899-22942918 | Msa0913060:intron | 45.0% | |
| CACCATCTCCCTAGAAATCA+AGG | + | chr6_2:22942953-22942972 | Msa0913060:intron | 45.0% | |
| ! | CACCTTGATTTCTAGGGAGA+TGG | - | chr6_2:22942958-22942977 | None:intergenic | 45.0% |
| CATCTCCCTAGAAATCAAGG+TGG | + | chr6_2:22942956-22942975 | Msa0913060:intron | 45.0% | |
| GGAACCCACCTTGATTTCTA+GGG | - | chr6_2:22942964-22942983 | None:intergenic | 45.0% | |
| ! | AAATAGGTGCCGCCATTTGT+TGG | + | chr6_2:22943140-22943159 | Msa0913060:intron | 45.0% |
| ! | AATAGGTGCCGCCATTTGTT+GGG | + | chr6_2:22943141-22943160 | Msa0913060:intron | 45.0% |
| ! | TCATCCAAACAGGGCCTTTT+TGG | + | chr6_2:22943504-22943523 | Msa0913060:intron | 45.0% |
| GGCAATATCTAATGCTGCTG+AGG | - | chr6_2:22943539-22943558 | None:intergenic | 45.0% | |
| CAGCATTAGATATTGCCACG+TGG | + | chr6_2:22943542-22943561 | Msa0913060:intron | 45.0% | |
| CAGTTCCCTACCAATTTGAC+TGG | + | chr6_2:22944090-22944109 | Msa0913060:CDS | 45.0% | |
| TCCCTACCAATTTGACTGGA+TGG | + | chr6_2:22944094-22944113 | Msa0913060:CDS | 45.0% | |
| !! | ATGGTTGGTTTGTGTGCACT+TGG | + | chr6_2:22944224-22944243 | Msa0913060:intron | 45.0% |
| GGCAAAAGTTATGCCAGTTG+GGG | + | chr6_2:22944531-22944550 | Msa0913060:intron | 45.0% | |
| GAGAGGGACGAAAGAGAGAA+AGG | + | chr6_2:22940505-22940524 | Msa0913060:five_prime_UTR | 50.0% | |
| ATTGGTGCAGATCGGAGTGT+TGG | - | chr6_2:22940554-22940573 | None:intergenic | 50.0% | |
| TGATGGCAAGCAGTCAACAG+AGG | + | chr6_2:22941110-22941129 | Msa0913060:CDS | 50.0% | |
| !! | GAAAGTGAGAGTGGTGATGG+AGG | - | chr6_2:22941218-22941237 | None:intergenic | 50.0% |
| CCTCTGCATCACAAGTAAGC+TGG | - | chr6_2:22941695-22941714 | None:intergenic | 50.0% | |
| CCAGCTTACTTGTGATGCAG+AGG | + | chr6_2:22941692-22941711 | Msa0913060:intron | 50.0% | |
| GTGGTGGCAAAAGATGGTTC+TGG | + | chr6_2:22942235-22942254 | Msa0913060:CDS | 50.0% | |
| !! | ATTTTGGCGGCACCACCAAT+AGG | + | chr6_2:22942519-22942538 | Msa0913060:intron | 50.0% |
| GGGAACCCACCTTGATTTCT+AGG | - | chr6_2:22942965-22942984 | None:intergenic | 50.0% | |
| !! | ATGGCGGCACCTATTTTTCC+AGG | - | chr6_2:22943136-22943155 | None:intergenic | 50.0% |
| TCTGGAAGACAATCTCCTGG+TGG | + | chr6_2:22943711-22943730 | Msa0913060:CDS | 50.0% | |
| GTGCATGTCAATGAGGCCTA+CGG | + | chr6_2:22944291-22944310 | Msa0913060:intron | 50.0% | |
| TTAGGCAATGGGGGACATAC+AGG | + | chr6_2:22944419-22944438 | Msa0913060:intron | 50.0% | |
| TAGGCAATGGGGGACATACA+GGG | + | chr6_2:22944420-22944439 | Msa0913060:intron | 50.0% | |
| ACGCATCGCACAAACGAAGA+AGG | - | chr6_2:22944946-22944965 | None:intergenic | 50.0% | |
| !! | GTGCAGATCGGAGTGTTGGA+CGG | - | chr6_2:22940550-22940569 | None:intergenic | 55.0% |
| GGGGGACATACAGGGATCTA+TGG | + | chr6_2:22944428-22944447 | Msa0913060:intron | 55.0% | |
| GTGTTGGACGGCGAGATCGA+CGG | - | chr6_2:22940538-22940557 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 22940498 | 22945002 | 22940498 | ID=Msa0913060;Name=Msa0913060 |
| chr6_2 | mRNA | 22940498 | 22945002 | 22940498 | ID=Msa0913060-mRNA-1;Parent=Msa0913060;Name=Msa0913060-mRNA-1;_AED=0.37;_eAED=0.37;_QI=87|0.42|0.37|1|0.42|0.25|8|0|211 |
| chr6_2 | exon | 22940498 | 22940584 | 22940498 | ID=Msa0913060-mRNA-1:exon:4549;Parent=Msa0913060-mRNA-1 |
| chr6_2 | exon | 22941070 | 22941141 | 22941070 | ID=Msa0913060-mRNA-1:exon:4550;Parent=Msa0913060-mRNA-1 |
| chr6_2 | exon | 22942154 | 22942330 | 22942154 | ID=Msa0913060-mRNA-1:exon:4551;Parent=Msa0913060-mRNA-1 |
| chr6_2 | exon | 22942337 | 22942478 | 22942337 | ID=Msa0913060-mRNA-1:exon:4552;Parent=Msa0913060-mRNA-1 |
| chr6_2 | exon | 22943146 | 22943205 | 22943146 | ID=Msa0913060-mRNA-1:exon:4553;Parent=Msa0913060-mRNA-1 |
| chr6_2 | exon | 22943706 | 22943780 | 22943706 | ID=Msa0913060-mRNA-1:exon:4554;Parent=Msa0913060-mRNA-1 |
| chr6_2 | exon | 22944052 | 22944152 | 22944052 | ID=Msa0913060-mRNA-1:exon:4555;Parent=Msa0913060-mRNA-1 |
| chr6_2 | exon | 22944997 | 22945002 | 22944997 | ID=Msa0913060-mRNA-1:exon:4556;Parent=Msa0913060-mRNA-1 |
| chr6_2 | five_prime_UTR | 22940498 | 22940584 | 22940498 | ID=Msa0913060-mRNA-1:five_prime_utr;Parent=Msa0913060-mRNA-1 |
| chr6_2 | CDS | 22941070 | 22941141 | 22941070 | ID=Msa0913060-mRNA-1:cds;Parent=Msa0913060-mRNA-1 |
| chr6_2 | CDS | 22942154 | 22942330 | 22942154 | ID=Msa0913060-mRNA-1:cds;Parent=Msa0913060-mRNA-1 |
| chr6_2 | CDS | 22942337 | 22942478 | 22942337 | ID=Msa0913060-mRNA-1:cds;Parent=Msa0913060-mRNA-1 |
| chr6_2 | CDS | 22943146 | 22943205 | 22943146 | ID=Msa0913060-mRNA-1:cds;Parent=Msa0913060-mRNA-1 |
| chr6_2 | CDS | 22943706 | 22943780 | 22943706 | ID=Msa0913060-mRNA-1:cds;Parent=Msa0913060-mRNA-1 |
| chr6_2 | CDS | 22944052 | 22944152 | 22944052 | ID=Msa0913060-mRNA-1:cds;Parent=Msa0913060-mRNA-1 |
| chr6_2 | CDS | 22944997 | 22945002 | 22944997 | ID=Msa0913060-mRNA-1:cds;Parent=Msa0913060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
