AlfalfaGEDB | Msa0556550

M. sativa cultivar zhongmu-4 / Msa0556550

KEGG: -
GO: -
PFAM: PF02739.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556550	XP_003608059.2	87.016	439	7	4	1	389	1	439	0.0	754

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556550	sp\|O52225\|DPO1_THEFI	40.805	174	94	4	157	327	65	232	1.24e-33	136

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556550	G7JNK8	87.016	439	7	4	1	389	1	439	0.0	754

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0556550	Msa0694640	0.881196	2.934921e-70	-8.615850e-47
Msa0556550	Msa0705670	0.806278	8.892147e-50	-8.615850e-47
Msa0556550	Msa1293060	0.801364	9.324893e-49	-8.615850e-47
Msa0556550	Msa1428050	0.807812	4.209549e-50	-8.615850e-47

Showing 1 to 4 of 4 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556550	MtrunA17_Chr4g0045531	82.863	461	7	4	1	389	1	461	0.0	746
Msa0556550	MtrunA17_Chr6g0462421	29.545	176	98	4	160	314	108	278	1.21e-15	77.8

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556550	AT3G52050.2	58.118	425	126	7	10	388	5	423	6.08e-156	446
Msa0556550	AT3G52050.1	58.118	425	126	7	10	388	5	423	6.08e-156	446
Msa0556550	AT3G52050.3	58.118	425	126	7	10	388	28	446	1.32e-155	446
Msa0556550	AT3G52050.4	57.176	425	118	9	10	388	5	411	9.54e-150	430
Msa0556550	AT3G52050.8	56.235	425	116	8	10	388	5	405	7.76e-147	422
Msa0556550	AT3G52050.7	56.235	425	116	8	10	388	5	405	7.76e-147	422
Msa0556550	AT3G52050.6	56.235	425	116	8	10	388	28	428	3.59e-146	421
Msa0556550	AT3G52050.5	56.196	347	97	7	10	325	28	350	3.04e-114	338
Msa0556550	AT1G34380.3	28.485	165	106	5	160	314	120	282	3.67e-12	67.4
Msa0556550	AT1G34380.2	28.485	165	106	5	160	314	120	282	5.28e-12	67.0

Showing 1 to 10 of 10 entries

Previous1Next

Find 143 sgRNAs with CRISPR-Local

Find 732 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAGCATGTCAATAC+TGG	0.370290	4_1:-54801325	Msa0556550:three_prime_UTR
AAACATACCACCACATGGGA+AGG	0.581300	4_1:+54809342	None:intergenic
AAATCGCTCTGCAAAGTCCT+CGG	0.604607	4_1:+54804652	None:intergenic
AACCCAATCTCCATTTCCAT+CGG	0.588128	4_1:+54810176	None:intergenic
AACGTATACATAACTTCAAG+AGG	0.554822	4_1:-54801013	Msa0556550:three_prime_UTR
AACTTCTCCAACCACCGGAA+CGG	0.599945	4_1:-54811019	Msa0556550:CDS
AAGAGAACGCACCTTTGAAA+TGG	0.423814	4_1:+54811408	None:intergenic
AAGCACTGATAGCTGTTAAA+AGG	0.346617	4_1:+54801468	None:intergenic
AATCCCCTCATGTTGTATTG+TGG	0.492535	4_1:+54801300	None:intergenic
AATTGTTCTAAACAAGAAAT+GGG	0.504361	4_1:+54811291	None:intergenic

Showing 1 to 10 of 143 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CGAAAGAAGAATAAAAAGCA+CGG	+	chr4_1:54801256-54801275	None:intergenic	30.0%
TCTTTGGATTCACATAAAGA+TGG	-	chr4_1:54801321-54801340	Msa0556550:three_prime_UTR	30.0%
AGAAACAATAGCACATTGTT+GGG	+	chr4_1:54801903-54801922	None:intergenic	30.0%
AAGAAACAATAGCACATTGT+TGG	+	chr4_1:54801904-54801923	None:intergenic	30.0%
TACTTTGCTGCTGATAAATT+TGG	-	chr4_1:54802047-54802066	Msa0556550:intron	30.0%
AACCAATCAAAATAAGAGGA+AGG	+	chr4_1:54802084-54802103	None:intergenic	30.0%
TATTCTGATCTCTGATATGA+AGG	-	chr4_1:54802382-54802401	Msa0556550:intron	30.0%
ATTCTGATCTCTGATATGAA+GGG	-	chr4_1:54802383-54802402	Msa0556550:intron	30.0%
ATTCAGAAAAGTCTTGATGA+GGG	+	chr4_1:54802418-54802437	None:intergenic	30.0%
AATTCAGAAAAGTCTTGATG+AGG	+	chr4_1:54802419-54802438	None:intergenic	30.0%

Showing 1 to 10 of 732 entries

Previous1 2 3 4 5…74Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	54800922	54811475	54800922	ID=Msa0556550;Name=Msa0556550
chr4_1	mRNA	54800922	54811475	54800922	ID=Msa0556550-mRNA-1;Parent=Msa0556550;Name=Msa0556550-mRNA-1;_AED=0.09;_eAED=0.09;_QI=122\|0.76\|0.85\|1\|1\|1\|14\|472\|389
chr4_1	exon	54800922	54801513	54800922	ID=Msa0556550-mRNA-1:exon:16260;Parent=Msa0556550-mRNA-1
chr4_1	exon	54801981	54802055	54801981	ID=Msa0556550-mRNA-1:exon:16259;Parent=Msa0556550-mRNA-1
chr4_1	exon	54802442	54802500	54802442	ID=Msa0556550-mRNA-1:exon:16258;Parent=Msa0556550-mRNA-1
chr4_1	exon	54803835	54803885	54803835	ID=Msa0556550-mRNA-1:exon:16257;Parent=Msa0556550-mRNA-1
chr4_1	exon	54804582	54804691	54804582	ID=Msa0556550-mRNA-1:exon:16256;Parent=Msa0556550-mRNA-1
chr4_1	exon	54805528	54805613	54805528	ID=Msa0556550-mRNA-1:exon:16255;Parent=Msa0556550-mRNA-1
chr4_1	exon	54805986	54806054	54805986	ID=Msa0556550-mRNA-1:exon:16254;Parent=Msa0556550-mRNA-1
chr4_1	exon	54806134	54806252	54806134	ID=Msa0556550-mRNA-1:exon:16253;Parent=Msa0556550-mRNA-1
chr4_1	exon	54807317	54807370	54807317	ID=Msa0556550-mRNA-1:exon:16252;Parent=Msa0556550-mRNA-1
chr4_1	exon	54809168	54809186	54809168	ID=Msa0556550-mRNA-1:exon:16251;Parent=Msa0556550-mRNA-1
chr4_1	exon	54809350	54809388	54809350	ID=Msa0556550-mRNA-1:exon:16250;Parent=Msa0556550-mRNA-1
chr4_1	exon	54810149	54810228	54810149	ID=Msa0556550-mRNA-1:exon:16249;Parent=Msa0556550-mRNA-1
chr4_1	exon	54810974	54811091	54810974	ID=Msa0556550-mRNA-1:exon:16248;Parent=Msa0556550-mRNA-1
chr4_1	exon	54811183	54811475	54811183	ID=Msa0556550-mRNA-1:exon:16247;Parent=Msa0556550-mRNA-1
chr4_1	five_prime_UTR	54811354	54811475	54811354	ID=Msa0556550-mRNA-1:five_prime_utr;Parent=Msa0556550-mRNA-1
chr4_1	CDS	54811183	54811353	54811183	ID=Msa0556550-mRNA-1:cds;Parent=Msa0556550-mRNA-1
chr4_1	CDS	54810974	54811091	54810974	ID=Msa0556550-mRNA-1:cds;Parent=Msa0556550-mRNA-1
chr4_1	CDS	54810149	54810228	54810149	ID=Msa0556550-mRNA-1:cds;Parent=Msa0556550-mRNA-1
chr4_1	CDS	54809350	54809388	54809350	ID=Msa0556550-mRNA-1:cds;Parent=Msa0556550-mRNA-1
chr4_1	CDS	54809168	54809186	54809168	ID=Msa0556550-mRNA-1:cds;Parent=Msa0556550-mRNA-1
chr4_1	CDS	54807317	54807370	54807317	ID=Msa0556550-mRNA-1:cds;Parent=Msa0556550-mRNA-1
chr4_1	CDS	54806134	54806252	54806134	ID=Msa0556550-mRNA-1:cds;Parent=Msa0556550-mRNA-1
chr4_1	CDS	54805986	54806054	54805986	ID=Msa0556550-mRNA-1:cds;Parent=Msa0556550-mRNA-1
chr4_1	CDS	54805528	54805613	54805528	ID=Msa0556550-mRNA-1:cds;Parent=Msa0556550-mRNA-1
chr4_1	CDS	54804582	54804691	54804582	ID=Msa0556550-mRNA-1:cds;Parent=Msa0556550-mRNA-1
chr4_1	CDS	54803835	54803885	54803835	ID=Msa0556550-mRNA-1:cds;Parent=Msa0556550-mRNA-1
chr4_1	CDS	54802442	54802500	54802442	ID=Msa0556550-mRNA-1:cds;Parent=Msa0556550-mRNA-1
chr4_1	CDS	54801981	54802055	54801981	ID=Msa0556550-mRNA-1:cds;Parent=Msa0556550-mRNA-1
chr4_1	CDS	54801394	54801513	54801394	ID=Msa0556550-mRNA-1:cds;Parent=Msa0556550-mRNA-1
chr4_1	three_prime_UTR	54800922	54801393	54800922	ID=Msa0556550-mRNA-1:three_prime_utr;Parent=Msa0556550-mRNA-1

Gene Sequence

>Msa0556550

ATGGCATGCTACTATAAGCACCACTCCTTCTTTCTTCACTCCCATTTCTTGTTTAGAACAATTCCATTTCCTCTCCGTCGCATTCACACCACCACCACCACCGTCGGAAACTACTCTCGCAGTTTTCAATCACCAAACCTTCTTCGTTCTTCACGCGCACCACTCTCCAAGGGTTTTTGTAGTGTATCTTTGGATTCACATAAAGATGGAGTTGTTTCTGCAACTTCTCCAACCACCGGAACGGTGCCTCCAGAAATTAGTTACGGAGCTGCTCAACCCGTGCACATTGCAAAATTGCACCATGGTCATCTAGCACATGCCGATGGAAATGGAGATTGGGTTTTGACAATTTTTTCAGCACTATCATTTATTATTGATGTTCTGGAATTCATTCCTTCCCATGTGGTGGTAGTGTTTGACCATGATGGAATTCCATTTCGTCAGACTCTTAATTCATCAAAACAAAGTTTTACTGCTAAAGGCCAGAACTTTAGGCACAATCTATACCCTGCGTACAAGAGCAATCGTCCTCCTACTCCTGATACCATTGTTCAGGGACTTCAATACCTCAAAGCATCCATCAAGGCCATGGCCATAAAAGTTCCAGGTGTAGAAGCAGATGATGTGATTGGAACATTAGCCTTAAGGAGTGTTGATGCTGGGTACAAGGTACGAGTTGTCTCCCCAGACAAAGACTTTTTTCAGATTCTATCTCCGTCGTTACGTCTCCTAAGACTTGCTCCACGTGGTGATCAGATGGTTTCGTTTGGAGCCGAGGACTTTGCAGAGCGATTTGGAGGTCTGAAACCATCCCAGTTTGTGGATATGATTGCACTTTCTGGTGACAGATCTGATAATATTCCAGGAGTTAATGGAATTGGAGACGTTTATGCTGTGCAATTGATCAGTAAATTTGGCACATTGGAGAAGTTGTTGGAATCTGTTGACCAAATCAAAGAGGATCGTATTAGAAAGGCGTTGTTACGTTGTGATCTCCCATCCTACATGGTACCATTCACTGTAAAAGATCTCTTGTTTACTAAACCCGAGGACAATGGCAGCAAATTCAACAGCCTTTTAACAGCTATCAGTGCTTACGCAGAAGGATTTTCAGCTGATCCTATCATCAGGAGAGTGTATCATTTGTGGGAAAAGTTGGATTCAAGGTGA

Protein sequence

>Msa0556550

MACYYKHHSFFLHSHFLFRTIPFPLRRIHTTTTTVGNYSRSFQSPNLLRSSRAPLSKGFCSVSLDSHKDGVVSATSPTTGTVPPEISYGAAQPVHIAKLHHGHLAHADGNGDWVLTIFSALSFIIDVLEFIPSHVVVVFDHDGIPFRQTLNSSKQSFTAKGQNFRHNLYPAYKSNRPPTPDTIVQGLQYLKASIKAMAIKVPGVEADDVIGTLALRSVDAGYKVRVVSPDKDFFQILSPSLRLLRLAPRGDQMVSFGAEDFAERFGGLKPSQFVDMIALSGDRSDNIPGVNGIGDVYAVQLISKFGTLEKLLESVDQIKEDRIRKALLRCDLPSYMVPFTVKDLLFTKPEDNGSKFNSLLTAISAYAEGFSADPIIRRVYHLWEKLDSR*