AlfalfaGEDB | Msa0556820

M. sativa cultivar zhongmu-4 / Msa0556820

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556820	XP_003608130.2	91.120	259	19	1	1	255	1	259	3.60e-159	453

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556820	sp\|Q9LET0\|BH107_ARATH	39.205	176	98	6	63	236	37	205	1.28e-27	109

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556820	G7JPQ2	91.120	259	19	1	1	255	1	259	1.72e-159	453

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TFs/TRs:

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Gene ID	Type	Classification
Msa0556820	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0556820	Msa0556890	0.973246	4.182734e-136	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556820	MtrunA17_Chr4g0045901	91.120	259	19	1	1	255	1	259	3.31e-163	453
Msa0556820	MtrunA17_Chr2g0325521	46.667	210	107	4	30	238	21	226	8.82e-48	159
Msa0556820	MtrunA17_Chr4g0041051	38.224	259	151	7	1	258	1	251	1.37e-40	140
Msa0556820	MtrunA17_Chr2g0283714	46.667	165	41	3	104	268	16	133	5.19e-36	125
Msa0556820	MtrunA17_Chr7g0255961	37.143	175	97	5	62	226	58	229	7.35e-30	112
Msa0556820	MtrunA17_Chr3g0113721	33.166	199	113	6	65	253	33	221	1.18e-27	106
Msa0556820	MtrunA17_Chr1g0198801	42.778	180	92	5	57	232	144	316	1.16e-25	103
Msa0556820	MtrunA17_Chr5g0412371	32.919	161	96	4	69	223	43	197	1.51e-17	79.0
Msa0556820	MtrunA17_Chr5g0427361	33.500	200	90	4	64	230	30	219	5.99e-15	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556820	AT3G56770.1	39.205	176	98	6	63	236	37	205	1.30e-28	109
Msa0556820	AT2G40200.1	40.152	132	75	2	73	201	65	195	3.79e-26	103
Msa0556820	AT1G68810.1	35.659	258	150	8	5	251	98	350	1.07e-24	101
Msa0556820	AT2G41130.1	37.500	176	102	4	63	236	59	228	2.77e-23	95.9
Msa0556820	AT3G25710.1	32.642	193	110	4	27	202	72	261	1.75e-20	89.7

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Find 48 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTCAACATTGGAAAGC+AGG	0.511259	4_1:+55084465	Msa0556820:CDS
AAATGTTGTTCACAAGGCAC+TGG	0.530660	4_1:+55084559	Msa0556820:CDS
AATCAAACTTTGGATAACTT+TGG	0.378387	4_1:+55082318	Msa0556820:CDS
AATGCAATGGAAGCAAGCAA+AGG	0.642370	4_1:+55084272	Msa0556820:CDS
ACCACCACATTCATTGGTTT+TGG	0.275049	4_1:+55082362	Msa0556820:CDS
ACTGGATTCTGTGCTGGAAA+AGG	0.471850	4_1:+55084577	Msa0556820:CDS
ACTTCAACTTCAACTAGTGA+AGG	0.632952	4_1:+55084439	Msa0556820:CDS
AGAAGAAGGGAGAGAATAAA+TGG	0.348920	4_1:+55082498	Msa0556820:CDS
AGAATCATAGGGAAGCAGAG+AGG	0.734182	4_1:+55082475	Msa0556820:CDS
AGATCCATGGCTGCATGAAG+AGG	0.593504	4_1:-55084678	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATAATTGGGTACCTGA+GGG	+	chr4_1:55082996-55083015	Msa0556820:intron	30.0%
AAACACAAACTAAAGGGATA+TGG	-	chr4_1:55083103-55083122	None:intergenic	30.0%
AAATATGTGTAAGTCGTAGA+AGG	+	chr4_1:55083130-55083149	Msa0556820:intron	30.0%
AAAGGATTCTGATTGCATTA+TGG	+	chr4_1:55083482-55083501	Msa0556820:intron	30.0%
GCATTATGGTTGTCATTATA+TGG	+	chr4_1:55083496-55083515	Msa0556820:intron	30.0%
GGCAACAAATAAAGATAAGA+TGG	-	chr4_1:55083752-55083771	None:intergenic	30.0%
CACATCACCATTATAAAGTT+AGG	-	chr4_1:55083773-55083792	None:intergenic	30.0%
TGATTTATTAAGGTGGATGA+AGG	-	chr4_1:55083924-55083943	None:intergenic	30.0%
ATTCAAGACAATGTTACCAA+AGG	+	chr4_1:55083980-55083999	Msa0556820:intron	30.0%
TCTTCTTCAATTTCTTCACT+TGG	-	chr4_1:55084253-55084272	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	55082258	55084712	55082258	ID=Msa0556820;Name=Msa0556820
chr4_1	mRNA	55082258	55084712	55082258	ID=Msa0556820-mRNA-1;Parent=Msa0556820;Name=Msa0556820-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|0\|0\|1\|1\|1\|2\|0\|268
chr4_1	exon	55082258	55082566	55082258	ID=Msa0556820-mRNA-1:exon:16419;Parent=Msa0556820-mRNA-1
chr4_1	exon	55084215	55084712	55084215	ID=Msa0556820-mRNA-1:exon:16420;Parent=Msa0556820-mRNA-1
chr4_1	CDS	55082258	55082566	55082258	ID=Msa0556820-mRNA-1:cds;Parent=Msa0556820-mRNA-1
chr4_1	CDS	55084215	55084712	55084215	ID=Msa0556820-mRNA-1:cds;Parent=Msa0556820-mRNA-1

Gene Sequence

>Msa0556820

ATGGATTACTCATTTTATGACAAAATTTATTCATCATCGTATGATCATTTGAGTTTGTTCAATCAAACTTTGGATAACTTTGGAGCTTCCAATGGATTGTCATCACCACCACATTCATTGGTTTTGGAGAATGAGAAGGAAAAGGTGGTGGAGTGCCCTGTTACTGAAAAGGTTGGTAAAGATGAGATTTCTGAGGTGAAAGGTTTAGCTTCTTTGAAGAATCATAGGGAAGCAGAGAGGAGAAGAAGGGAGAGAATAAATGGTCACCTTGAAACATTACGTAGTCTTGTAGCTTCCACTCAACAAAAGATGGATAAAGCTACAATACTTGCTGAAGTGATTAGCCAAGTGAAGAAATTGAAGAAGAATGCAATGGAAGCAAGCAAAGGTTTTCTCATTCCAACAGAAGTTGATGAAGTGAAAGTTGAACCATATGACATTAAATTAGGATATGGATGCATGTCTTACATAGCAACTATCTGCTGTGATTACAAACCTGAGATACTATGTGACCTCAAAAAAGCAATTGATGCACTTCAACTTCAACTAGTGAAGGCAGAAATGTCAACATTGGAAAGCAGGATGAAGAATATGTTTGTCTTTACATGTTGCAAAGGGAATAGTTTTAATGTTGAGGCATGTCAAAGTATTGCAAATGTTGTTCACAAGGCACTGGATTCTGTGCTGGAAAAGGCTTCTAACTCAATGGAATTTTCACTCAGAACTTCATATCCAAATAAGAGGAGAAGAATGTGCTTTGTTGAAACATCTACCTCTTCATGCAGCCATGGATCTTGTTCATGCTAA

Protein sequence

>Msa0556820

MDYSFYDKIYSSSYDHLSLFNQTLDNFGASNGLSSPPHSLVLENEKEKVVECPVTEKVGKDEISEVKGLASLKNHREAERRRRERINGHLETLRSLVASTQQKMDKATILAEVISQVKKLKKNAMEASKGFLIPTEVDEVKVEPYDIKLGYGCMSYIATICCDYKPEILCDLKKAIDALQLQLVKAEMSTLESRMKNMFVFTCCKGNSFNVEACQSIANVVHKALDSVLEKASNSMEFSLRTSYPNKRRRMCFVETSTSSCSHGSCSC*