Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556820 | XP_003608130.2 | 91.120 | 259 | 19 | 1 | 1 | 255 | 1 | 259 | 3.60e-159 | 453 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556820 | sp|Q9LET0|BH107_ARATH | 39.205 | 176 | 98 | 6 | 63 | 236 | 37 | 205 | 1.28e-27 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556820 | G7JPQ2 | 91.120 | 259 | 19 | 1 | 1 | 255 | 1 | 259 | 1.72e-159 | 453 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0556820 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0556820 | Msa0556890 | 0.973246 | 4.182734e-136 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556820 | MtrunA17_Chr4g0045901 | 91.120 | 259 | 19 | 1 | 1 | 255 | 1 | 259 | 3.31e-163 | 453 |
| Msa0556820 | MtrunA17_Chr2g0325521 | 46.667 | 210 | 107 | 4 | 30 | 238 | 21 | 226 | 8.82e-48 | 159 |
| Msa0556820 | MtrunA17_Chr4g0041051 | 38.224 | 259 | 151 | 7 | 1 | 258 | 1 | 251 | 1.37e-40 | 140 |
| Msa0556820 | MtrunA17_Chr2g0283714 | 46.667 | 165 | 41 | 3 | 104 | 268 | 16 | 133 | 5.19e-36 | 125 |
| Msa0556820 | MtrunA17_Chr7g0255961 | 37.143 | 175 | 97 | 5 | 62 | 226 | 58 | 229 | 7.35e-30 | 112 |
| Msa0556820 | MtrunA17_Chr3g0113721 | 33.166 | 199 | 113 | 6 | 65 | 253 | 33 | 221 | 1.18e-27 | 106 |
| Msa0556820 | MtrunA17_Chr1g0198801 | 42.778 | 180 | 92 | 5 | 57 | 232 | 144 | 316 | 1.16e-25 | 103 |
| Msa0556820 | MtrunA17_Chr5g0412371 | 32.919 | 161 | 96 | 4 | 69 | 223 | 43 | 197 | 1.51e-17 | 79.0 |
| Msa0556820 | MtrunA17_Chr5g0427361 | 33.500 | 200 | 90 | 4 | 64 | 230 | 30 | 219 | 5.99e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556820 | AT3G56770.1 | 39.205 | 176 | 98 | 6 | 63 | 236 | 37 | 205 | 1.30e-28 | 109 |
| Msa0556820 | AT2G40200.1 | 40.152 | 132 | 75 | 2 | 73 | 201 | 65 | 195 | 3.79e-26 | 103 |
| Msa0556820 | AT1G68810.1 | 35.659 | 258 | 150 | 8 | 5 | 251 | 98 | 350 | 1.07e-24 | 101 |
| Msa0556820 | AT2G41130.1 | 37.500 | 176 | 102 | 4 | 63 | 236 | 59 | 228 | 2.77e-23 | 95.9 |
| Msa0556820 | AT3G25710.1 | 32.642 | 193 | 110 | 4 | 27 | 202 | 72 | 261 | 1.75e-20 | 89.7 |
Find 48 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTCTTCTCCTCTTATT+TGG | 0.100613 | 4_1:-55084638 | None:intergenic |
| GAACCATATGACATTAAATT+AGG | 0.253041 | 4_1:+55084332 | Msa0556820:CDS |
| ACCACCACATTCATTGGTTT+TGG | 0.275049 | 4_1:+55082362 | Msa0556820:CDS |
| TAGCTTCTTTGAAGAATCAT+AGG | 0.317081 | 4_1:+55082463 | Msa0556820:CDS |
| GTCATCACCACCACATTCAT+TGG | 0.344688 | 4_1:+55082356 | Msa0556820:CDS |
| AGAAGAAGGGAGAGAATAAA+TGG | 0.348920 | 4_1:+55082498 | Msa0556820:CDS |
| TATGACATTAAATTAGGATA+TGG | 0.351083 | 4_1:+55084338 | Msa0556820:CDS |
| AATCAAACTTTGGATAACTT+TGG | 0.378387 | 4_1:+55082318 | Msa0556820:CDS |
| TTCACTTCATCAACTTCTGT+TGG | 0.395317 | 4_1:-55084305 | None:intergenic |
| TATCCTAATTTAATGTCATA+TGG | 0.399856 | 4_1:-55084335 | None:intergenic |
| CAAGACTACGTAATGTTTCA+AGG | 0.407591 | 4_1:-55082524 | None:intergenic |
| TTGAGGTCACATAGTATCTC+AGG | 0.408328 | 4_1:-55084401 | None:intergenic |
| TCTTCTTCAATTTCTTCACT+TGG | 0.420059 | 4_1:-55084250 | None:intergenic |
| GAACTTCATATCCAAATAAG+AGG | 0.441039 | 4_1:+55084627 | Msa0556820:CDS |
| GGGAAGCAGAGAGGAGAAGA+AGG | 0.448212 | 4_1:+55082484 | Msa0556820:CDS |
| ACTGGATTCTGTGCTGGAAA+AGG | 0.471850 | 4_1:+55084577 | Msa0556820:CDS |
| CAAGGCACTGGATTCTGTGC+TGG | 0.480944 | 4_1:+55084571 | Msa0556820:CDS |
| GAGTTTGTTCAATCAAACTT+TGG | 0.484332 | 4_1:+55082308 | Msa0556820:CDS |
| GGAAGCAGAGAGGAGAAGAA+GGG | 0.491306 | 4_1:+55082485 | Msa0556820:CDS |
| TGTAGCTTCCACTCAACAAA+AGG | 0.500104 | 4_1:+55082545 | Msa0556820:CDS |
| GGAAAAGGCTTCTAACTCAA+TGG | 0.501654 | 4_1:+55084592 | Msa0556820:CDS |
| TTGTCTTTACATGTTGCAAA+GGG | 0.509752 | 4_1:+55084501 | Msa0556820:CDS |
| AAATGTCAACATTGGAAAGC+AGG | 0.511259 | 4_1:+55084465 | Msa0556820:CDS |
| GAATGAGAAGGAAAAGGTGG+TGG | 0.516295 | 4_1:+55082386 | Msa0556820:CDS |
| GATAACTTTGGAGCTTCCAA+TGG | 0.517984 | 4_1:+55082330 | Msa0556820:CDS |
| CATGGATCTTGTTCATGCTA+AGG | 0.518273 | 4_1:+55084692 | Msa0556820:CDS |
| TTTGTCTTTACATGTTGCAA+AGG | 0.523070 | 4_1:+55084500 | Msa0556820:CDS |
| AAATGTTGTTCACAAGGCAC+TGG | 0.530660 | 4_1:+55084559 | Msa0556820:CDS |
| GATGAGATTTCTGAGGTGAA+AGG | 0.532394 | 4_1:+55082438 | Msa0556820:CDS |
| TTTGGAGAATGAGAAGGAAA+AGG | 0.540805 | 4_1:+55082380 | Msa0556820:CDS |
| ATGGATCTTGTTCATGCTAA+GGG | 0.558202 | 4_1:+55084693 | Msa0556820:CDS |
| GAAGGCAGAAATGTCAACAT+TGG | 0.560990 | 4_1:+55084457 | Msa0556820:CDS |
| AGCTTCTTTGAAGAATCATA+GGG | 0.564794 | 4_1:+55082464 | Msa0556820:CDS |
| GAAATTGAAGAAGAATGCAA+TGG | 0.567321 | 4_1:+55084259 | Msa0556820:CDS |
| GGAGTGCCCTGTTACTGAAA+AGG | 0.568614 | 4_1:+55082407 | Msa0556820:CDS |
| TCTACCTCTTCATGCAGCCA+TGG | 0.585535 | 4_1:+55084674 | Msa0556820:CDS |
| AGATCCATGGCTGCATGAAG+AGG | 0.593504 | 4_1:-55084678 | None:intergenic |
| GGAGAATGAGAAGGAAAAGG+TGG | 0.603497 | 4_1:+55082383 | Msa0556820:CDS |
| TGCCCTGTTACTGAAAAGGT+TGG | 0.605529 | 4_1:+55082411 | Msa0556820:CDS |
| TATTGCAAATGTTGTTCACA+AGG | 0.609473 | 4_1:+55084553 | Msa0556820:CDS |
| CTTAGCATGAACAAGATCCA+TGG | 0.618302 | 4_1:-55084691 | None:intergenic |
| TTCTCCAAAACCAATGAATG+TGG | 0.622319 | 4_1:-55082366 | None:intergenic |
| TGGTGGTGATGACAATCCAT+TGG | 0.624935 | 4_1:-55082346 | None:intergenic |
| TGGTAAAGATGAGATTTCTG+AGG | 0.632391 | 4_1:+55082431 | Msa0556820:CDS |
| ACTTCAACTTCAACTAGTGA+AGG | 0.632952 | 4_1:+55084439 | Msa0556820:CDS |
| AATGCAATGGAAGCAAGCAA+AGG | 0.642370 | 4_1:+55084272 | Msa0556820:CDS |
| TCCAAAACCAATGAATGTGG+TGG | 0.695002 | 4_1:-55082363 | None:intergenic |
| AGAATCATAGGGAAGCAGAG+AGG | 0.734182 | 4_1:+55082475 | Msa0556820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATAATTATTATTTTTT+TGG | - | chr4_1:55084131-55084150 | None:intergenic | 0.0% |
| !!! | TTTCATTTTAATTGTAAATT+CGG | + | chr4_1:55082622-55082641 | Msa0556820:intron | 10.0% |
| !!! | TAAAGTATTTTTTATTCTAA+AGG | - | chr4_1:55083279-55083298 | None:intergenic | 10.0% |
| !!! | TGATAATTTTAAAAGAAAAA+TGG | + | chr4_1:55083390-55083409 | Msa0556820:intron | 10.0% |
| !! | GATGATTATAATATTAATAT+CGG | - | chr4_1:55083902-55083921 | None:intergenic | 10.0% |
| !!! | ATAATTATTATTTTTTTGGA+AGG | - | chr4_1:55084127-55084146 | None:intergenic | 10.0% |
| !! | TAAATAAGCATTAACAAATA+AGG | - | chr4_1:55083335-55083354 | None:intergenic | 15.0% |
| !! | CATTATTGTAATTAAAGTAA+AGG | + | chr4_1:55083464-55083483 | Msa0556820:intron | 15.0% |
| !! | ATTTAATGGAAAGTTGAAAT+TGG | + | chr4_1:55082882-55082901 | Msa0556820:intron | 20.0% |
| !! | TTTAATGGAAAGTTGAAATT+GGG | + | chr4_1:55082883-55082902 | Msa0556820:intron | 20.0% |
| !!! | AAGATATAGTTTTGGTTTTT+AGG | + | chr4_1:55082913-55082932 | Msa0556820:intron | 20.0% |
| !!! | TCAGAATTTTGATATTGAAT+AGG | + | chr4_1:55083055-55083074 | Msa0556820:intron | 20.0% |
| !!! | CAGAATTTTGATATTGAATA+GGG | + | chr4_1:55083056-55083075 | Msa0556820:intron | 20.0% |
| !! | AGAAATAAACACAAACTAAA+GGG | - | chr4_1:55083109-55083128 | None:intergenic | 20.0% |
| !! | AATACATATGATATCGTATA+TGG | + | chr4_1:55083177-55083196 | Msa0556820:intron | 20.0% |
| !! | AATATCATGAACTCTATAAT+TGG | - | chr4_1:55083623-55083642 | None:intergenic | 20.0% |
| !! | ATAGAGTTCATGATATTATA+TGG | + | chr4_1:55083626-55083645 | Msa0556820:intron | 20.0% |
| !! | CTAAATTAAGTTCAAATATG+TGG | + | chr4_1:55084017-55084036 | Msa0556820:intron | 20.0% |
| !!! | ATATGTTGAATTTGATTTTG+TGG | + | chr4_1:55084169-55084188 | Msa0556820:intron | 20.0% |
| !!! | TATGTTGAATTTGATTTTGT+GGG | + | chr4_1:55084170-55084189 | Msa0556820:intron | 20.0% |
| !! | TATCCTAATTTAATGTCATA+TGG | - | chr4_1:55084338-55084357 | None:intergenic | 20.0% |
| !! | TATGACATTAAATTAGGATA+TGG | + | chr4_1:55084338-55084357 | Msa0556820:CDS | 20.0% |
| ! | AATCAAACTTTGGATAACTT+TGG | + | chr4_1:55082318-55082337 | Msa0556820:CDS | 25.0% |
| ! | TGGATTATGAACAAAATAGT+TGG | + | chr4_1:55082674-55082693 | Msa0556820:intron | 25.0% |
| ! | AAGGGAATTGATAGATTTAA+TGG | + | chr4_1:55082868-55082887 | Msa0556820:intron | 25.0% |
| ! | ATCTTTGTTCAAACTTAAAC+TGG | - | chr4_1:55082943-55082962 | None:intergenic | 25.0% |
| ! | AGGTGAGAATGAAATATAAT+TGG | + | chr4_1:55082985-55083004 | Msa0556820:intron | 25.0% |
| ! | GGTGAGAATGAAATATAATT+GGG | + | chr4_1:55082986-55083005 | Msa0556820:intron | 25.0% |
| ! | CAGAAATAAACACAAACTAA+AGG | - | chr4_1:55083110-55083129 | None:intergenic | 25.0% |
| ! | ACTTCAAATTTCAAAACTTG+TGG | - | chr4_1:55083443-55083462 | None:intergenic | 25.0% |
| ! | TAATGAATGATTTCCAGTTT+GGG | - | chr4_1:55083653-55083672 | None:intergenic | 25.0% |
| ! | TTAATGAATGATTTCCAGTT+TGG | - | chr4_1:55083654-55083673 | None:intergenic | 25.0% |
| ! | AACAAATAAAGATAAGATGG+CGG | - | chr4_1:55083749-55083768 | None:intergenic | 25.0% |
| ! | TTTGTTGCCTAACTTTATAA+TGG | + | chr4_1:55083763-55083782 | Msa0556820:intron | 25.0% |
| !! | TAACTTTATAATGGTGATGT+GGG | + | chr4_1:55083772-55083791 | Msa0556820:intron | 25.0% |
| ! | GGGCAATTAATATAATACTA+TGG | + | chr4_1:55083793-55083812 | Msa0556820:intron | 25.0% |
| !!! | ATATTAATATCGGAGTATTG+AGG | - | chr4_1:55083892-55083911 | None:intergenic | 25.0% |
| !!! | ACAACTGAGTTGATTTATTA+AGG | - | chr4_1:55083934-55083953 | None:intergenic | 25.0% |
| ! | TTTGGAAGGAAAAAAATTGT+TGG | - | chr4_1:55084113-55084132 | None:intergenic | 25.0% |
| ! | TTTATCCATCTAAAGAGTAA+TGG | - | chr4_1:55084204-55084223 | None:intergenic | 25.0% |
| ! | GAACCATATGACATTAAATT+AGG | + | chr4_1:55084332-55084351 | Msa0556820:CDS | 25.0% |
| ! | GAGTTTGTTCAATCAAACTT+TGG | + | chr4_1:55082308-55082327 | Msa0556820:CDS | 30.0% |
| ! | TAGCTTCTTTGAAGAATCAT+AGG | + | chr4_1:55082463-55082482 | Msa0556820:CDS | 30.0% |
| ! | AGCTTCTTTGAAGAATCATA+GGG | + | chr4_1:55082464-55082483 | Msa0556820:CDS | 30.0% |
| ! | AAAACATACCTTTTGTTGAG+TGG | - | chr4_1:55082556-55082575 | None:intergenic | 30.0% |
| AAATATAATTGGGTACCTGA+GGG | + | chr4_1:55082996-55083015 | Msa0556820:intron | 30.0% | |
| AAACACAAACTAAAGGGATA+TGG | - | chr4_1:55083103-55083122 | None:intergenic | 30.0% | |
| AAATATGTGTAAGTCGTAGA+AGG | + | chr4_1:55083130-55083149 | Msa0556820:intron | 30.0% | |
| AAAGGATTCTGATTGCATTA+TGG | + | chr4_1:55083482-55083501 | Msa0556820:intron | 30.0% | |
| GCATTATGGTTGTCATTATA+TGG | + | chr4_1:55083496-55083515 | Msa0556820:intron | 30.0% | |
| ! | TACTGTTTGCTAAAGTCAAA+TGG | + | chr4_1:55083537-55083556 | Msa0556820:intron | 30.0% |
| GGCAACAAATAAAGATAAGA+TGG | - | chr4_1:55083752-55083771 | None:intergenic | 30.0% | |
| CACATCACCATTATAAAGTT+AGG | - | chr4_1:55083773-55083792 | None:intergenic | 30.0% | |
| ! | CTAACTTTATAATGGTGATG+TGG | + | chr4_1:55083771-55083790 | Msa0556820:intron | 30.0% |
| ! | AACTTTATAATGGTGATGTG+GGG | + | chr4_1:55083773-55083792 | Msa0556820:intron | 30.0% |
| TGATTTATTAAGGTGGATGA+AGG | - | chr4_1:55083924-55083943 | None:intergenic | 30.0% | |
| !! | ACTGAGTTGATTTATTAAGG+TGG | - | chr4_1:55083931-55083950 | None:intergenic | 30.0% |
| ATTCAAGACAATGTTACCAA+AGG | + | chr4_1:55083980-55083999 | Msa0556820:intron | 30.0% | |
| !! | AATTTGATTTTGTGGGTCAA+TGG | + | chr4_1:55084177-55084196 | Msa0556820:intron | 30.0% |
| TCTTCTTCAATTTCTTCACT+TGG | - | chr4_1:55084253-55084272 | None:intergenic | 30.0% | |
| GAAATTGAAGAAGAATGCAA+TGG | + | chr4_1:55084259-55084278 | Msa0556820:CDS | 30.0% | |
| TTTGTCTTTACATGTTGCAA+AGG | + | chr4_1:55084500-55084519 | Msa0556820:CDS | 30.0% | |
| TTGTCTTTACATGTTGCAAA+GGG | + | chr4_1:55084501-55084520 | Msa0556820:CDS | 30.0% | |
| !!! | AGGGAATAGTTTTAATGTTG+AGG | + | chr4_1:55084520-55084539 | Msa0556820:CDS | 30.0% |
| TATTGCAAATGTTGTTCACA+AGG | + | chr4_1:55084553-55084572 | Msa0556820:CDS | 30.0% | |
| GAACTTCATATCCAAATAAG+AGG | + | chr4_1:55084627-55084646 | Msa0556820:CDS | 30.0% | |
| TTCTCCAAAACCAATGAATG+TGG | - | chr4_1:55082369-55082388 | None:intergenic | 35.0% | |
| !!! | ATTGGTTTTGGAGAATGAGA+AGG | + | chr4_1:55082374-55082393 | Msa0556820:CDS | 35.0% |
| TTTGGAGAATGAGAAGGAAA+AGG | + | chr4_1:55082380-55082399 | Msa0556820:CDS | 35.0% | |
| ! | TACCAACCTTTTCAGTAACA+GGG | - | chr4_1:55082416-55082435 | None:intergenic | 35.0% |
| ! | TTACCAACCTTTTCAGTAAC+AGG | - | chr4_1:55082417-55082436 | None:intergenic | 35.0% |
| TGGTAAAGATGAGATTTCTG+AGG | + | chr4_1:55082431-55082450 | Msa0556820:CDS | 35.0% | |
| AGAAGAAGGGAGAGAATAAA+TGG | + | chr4_1:55082498-55082517 | Msa0556820:CDS | 35.0% | |
| CAAGACTACGTAATGTTTCA+AGG | - | chr4_1:55082527-55082546 | None:intergenic | 35.0% | |
| CAAAAAGAGCAATGAAAGCA+AGG | - | chr4_1:55082587-55082606 | None:intergenic | 35.0% | |
| !! | TCAATCTGATTCTGAAGTGT+CGG | - | chr4_1:55082724-55082743 | None:intergenic | 35.0% |
| ACACTTCAGAATCAGATTGA+AGG | + | chr4_1:55082724-55082743 | Msa0556820:intron | 35.0% | |
| ATTAAGCCCTAAAAGAGACA+CGG | - | chr4_1:55082796-55082815 | None:intergenic | 35.0% | |
| TCTATAAAATGCATGTGCTG+TGG | + | chr4_1:55082837-55082856 | Msa0556820:intron | 35.0% | |
| ! | GTGAGGGAAAGATATAGTTT+TGG | + | chr4_1:55082905-55082924 | Msa0556820:intron | 35.0% |
| AGATTGCAATACAAGCTTTG+AGG | + | chr4_1:55082959-55082978 | Msa0556820:intron | 35.0% | |
| GAAATATAATTGGGTACCTG+AGG | + | chr4_1:55082995-55083014 | Msa0556820:intron | 35.0% | |
| ! | TGACAATACATTTTTCCCTC+AGG | - | chr4_1:55083014-55083033 | None:intergenic | 35.0% |
| TTCTCTTAAGTCTCGAGAAT+TGG | - | chr4_1:55083240-55083259 | None:intergenic | 35.0% | |
| ATCAAAGAGCTAGCATGAAA+GGG | - | chr4_1:55083374-55083393 | None:intergenic | 35.0% | |
| TATCAAAGAGCTAGCATGAA+AGG | - | chr4_1:55083375-55083394 | None:intergenic | 35.0% | |
| CATGAACTCTATAATTGGTG+TGG | - | chr4_1:55083618-55083637 | None:intergenic | 35.0% | |
| GATATTATATGGTCCCAAAC+TGG | + | chr4_1:55083637-55083656 | Msa0556820:intron | 35.0% | |
| !! | AGTCAAGTTGATTGATCCTT+TGG | - | chr4_1:55083999-55084018 | None:intergenic | 35.0% |
| ATGGTCCATTACTCTTTAGA+TGG | + | chr4_1:55084196-55084215 | Msa0556820:intron | 35.0% | |
| TTCACTTCATCAACTTCTGT+TGG | - | chr4_1:55084308-55084327 | None:intergenic | 35.0% | |
| !!! | GTGCATCAATTGCTTTTTTG+AGG | - | chr4_1:55084421-55084440 | None:intergenic | 35.0% |
| ACTTCAACTTCAACTAGTGA+AGG | + | chr4_1:55084439-55084458 | Msa0556820:CDS | 35.0% | |
| AAATGTCAACATTGGAAAGC+AGG | + | chr4_1:55084465-55084484 | Msa0556820:CDS | 35.0% | |
| CACATTCTTCTCCTCTTATT+TGG | - | chr4_1:55084641-55084660 | None:intergenic | 35.0% | |
| !! | GATAACTTTGGAGCTTCCAA+TGG | + | chr4_1:55082330-55082349 | Msa0556820:CDS | 40.0% |
| !!! | ACCACCACATTCATTGGTTT+TGG | + | chr4_1:55082362-55082381 | Msa0556820:CDS | 40.0% |
| TCCAAAACCAATGAATGTGG+TGG | - | chr4_1:55082366-55082385 | None:intergenic | 40.0% | |
| !! | GATGAGATTTCTGAGGTGAA+AGG | + | chr4_1:55082438-55082457 | Msa0556820:CDS | 40.0% |
| TGTAGCTTCCACTCAACAAA+AGG | + | chr4_1:55082545-55082564 | Msa0556820:CDS | 40.0% | |
| AAGAGCAATGAAAGCAAGGA+AGG | - | chr4_1:55082583-55082602 | None:intergenic | 40.0% | |
| CTTCAGAATCAGATTGAAGG+TGG | + | chr4_1:55082727-55082746 | Msa0556820:intron | 40.0% | |
| ! | TAGCATCCGTGTCTCTTTTA+GGG | + | chr4_1:55082787-55082806 | Msa0556820:intron | 40.0% |
| TGGAAAGTTGAAATTGGGTG+AGG | + | chr4_1:55082888-55082907 | Msa0556820:intron | 40.0% | |
| GGAAAGTTGAAATTGGGTGA+GGG | + | chr4_1:55082889-55082908 | Msa0556820:intron | 40.0% | |
| !! | CAATACAAGCTTTGAGGCAT+AGG | + | chr4_1:55082965-55082984 | Msa0556820:intron | 40.0% |
| GGAAAGAGGAAGACAACAAA+TGG | - | chr4_1:55083871-55083890 | None:intergenic | 40.0% | |
| !! | TATCGGAGTATTGAGGAAAG+AGG | - | chr4_1:55083885-55083904 | None:intergenic | 40.0% |
| AATGCAATGGAAGCAAGCAA+AGG | + | chr4_1:55084272-55084291 | Msa0556820:CDS | 40.0% | |
| TTGAGGTCACATAGTATCTC+AGG | - | chr4_1:55084404-55084423 | None:intergenic | 40.0% | |
| GAAGGCAGAAATGTCAACAT+TGG | + | chr4_1:55084457-55084476 | Msa0556820:CDS | 40.0% | |
| AAATGTTGTTCACAAGGCAC+TGG | + | chr4_1:55084559-55084578 | Msa0556820:CDS | 40.0% | |
| GGAAAAGGCTTCTAACTCAA+TGG | + | chr4_1:55084592-55084611 | Msa0556820:CDS | 40.0% | |
| ! | TGGTGGTGATGACAATCCAT+TGG | - | chr4_1:55082349-55082368 | None:intergenic | 45.0% |
| GTCATCACCACCACATTCAT+TGG | + | chr4_1:55082356-55082375 | Msa0556820:CDS | 45.0% | |
| GGAGAATGAGAAGGAAAAGG+TGG | + | chr4_1:55082383-55082402 | Msa0556820:CDS | 45.0% | |
| GAATGAGAAGGAAAAGGTGG+TGG | + | chr4_1:55082386-55082405 | Msa0556820:CDS | 45.0% | |
| TGCCCTGTTACTGAAAAGGT+TGG | + | chr4_1:55082411-55082430 | Msa0556820:CDS | 45.0% | |
| AGAATCATAGGGAAGCAGAG+AGG | + | chr4_1:55082475-55082494 | Msa0556820:CDS | 45.0% | |
| ! | CTAGCATCCGTGTCTCTTTT+AGG | + | chr4_1:55082786-55082805 | Msa0556820:intron | 45.0% |
| ATGTGCTGTGGAGATGAGAA+AGG | + | chr4_1:55082849-55082868 | Msa0556820:intron | 45.0% | |
| TGTGCTGTGGAGATGAGAAA+GGG | + | chr4_1:55082850-55082869 | Msa0556820:intron | 45.0% | |
| ACTGGATTCTGTGCTGGAAA+AGG | + | chr4_1:55084577-55084596 | Msa0556820:CDS | 45.0% | |
| !!! | TTCTAAAATATTTTAATTAA+TGG | + | chr4_1:55082654-55082673 | Msa0556820:intron | 5.0% |
| ! | GGAGTGCCCTGTTACTGAAA+AGG | + | chr4_1:55082407-55082426 | Msa0556820:CDS | 50.0% |
| GGAAGCAGAGAGGAGAAGAA+GGG | + | chr4_1:55082485-55082504 | Msa0556820:CDS | 50.0% | |
| TCTACCTCTTCATGCAGCCA+TGG | + | chr4_1:55084674-55084693 | Msa0556820:CDS | 50.0% | |
| AGATCCATGGCTGCATGAAG+AGG | - | chr4_1:55084681-55084700 | None:intergenic | 50.0% | |
| GGGAAGCAGAGAGGAGAAGA+AGG | + | chr4_1:55082484-55082503 | Msa0556820:CDS | 55.0% | |
| !! | CAAGGCACTGGATTCTGTGC+TGG | + | chr4_1:55084571-55084590 | Msa0556820:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 55082258 | 55084712 | 55082258 | ID=Msa0556820;Name=Msa0556820 |
| chr4_1 | mRNA | 55082258 | 55084712 | 55082258 | ID=Msa0556820-mRNA-1;Parent=Msa0556820;Name=Msa0556820-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|1|1|1|2|0|268 |
| chr4_1 | exon | 55082258 | 55082566 | 55082258 | ID=Msa0556820-mRNA-1:exon:16419;Parent=Msa0556820-mRNA-1 |
| chr4_1 | exon | 55084215 | 55084712 | 55084215 | ID=Msa0556820-mRNA-1:exon:16420;Parent=Msa0556820-mRNA-1 |
| chr4_1 | CDS | 55082258 | 55082566 | 55082258 | ID=Msa0556820-mRNA-1:cds;Parent=Msa0556820-mRNA-1 |
| chr4_1 | CDS | 55084215 | 55084712 | 55084215 | ID=Msa0556820-mRNA-1:cds;Parent=Msa0556820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
