Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556890 | XP_003608130.2 | 91.120 | 259 | 19 | 1 | 1 | 255 | 1 | 259 | 3.60e-159 | 453 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556890 | sp|Q9LET0|BH107_ARATH | 39.205 | 176 | 98 | 6 | 63 | 236 | 37 | 205 | 1.28e-27 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556890 | G7JPQ2 | 91.120 | 259 | 19 | 1 | 1 | 255 | 1 | 259 | 1.72e-159 | 453 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0556890 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0556820 | Msa0556890 | 0.973246 | 4.182734e-136 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556890 | MtrunA17_Chr4g0045901 | 91.120 | 259 | 19 | 1 | 1 | 255 | 1 | 259 | 3.31e-163 | 453 |
| Msa0556890 | MtrunA17_Chr2g0325521 | 46.667 | 210 | 107 | 4 | 30 | 238 | 21 | 226 | 8.82e-48 | 159 |
| Msa0556890 | MtrunA17_Chr4g0041051 | 38.224 | 259 | 151 | 7 | 1 | 258 | 1 | 251 | 1.37e-40 | 140 |
| Msa0556890 | MtrunA17_Chr2g0283714 | 46.667 | 165 | 41 | 3 | 104 | 268 | 16 | 133 | 5.19e-36 | 125 |
| Msa0556890 | MtrunA17_Chr7g0255961 | 37.143 | 175 | 97 | 5 | 62 | 226 | 58 | 229 | 7.35e-30 | 112 |
| Msa0556890 | MtrunA17_Chr3g0113721 | 33.166 | 199 | 113 | 6 | 65 | 253 | 33 | 221 | 1.18e-27 | 106 |
| Msa0556890 | MtrunA17_Chr1g0198801 | 42.778 | 180 | 92 | 5 | 57 | 232 | 144 | 316 | 1.16e-25 | 103 |
| Msa0556890 | MtrunA17_Chr5g0412371 | 32.919 | 161 | 96 | 4 | 69 | 223 | 43 | 197 | 1.51e-17 | 79.0 |
| Msa0556890 | MtrunA17_Chr5g0427361 | 33.500 | 200 | 90 | 4 | 64 | 230 | 30 | 219 | 5.99e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556890 | AT3G56770.1 | 39.205 | 176 | 98 | 6 | 63 | 236 | 37 | 205 | 1.30e-28 | 109 |
| Msa0556890 | AT2G40200.1 | 40.152 | 132 | 75 | 2 | 73 | 201 | 65 | 195 | 3.79e-26 | 103 |
| Msa0556890 | AT1G68810.1 | 35.659 | 258 | 150 | 8 | 5 | 251 | 98 | 350 | 1.07e-24 | 101 |
| Msa0556890 | AT2G41130.1 | 37.500 | 176 | 102 | 4 | 63 | 236 | 59 | 228 | 2.77e-23 | 95.9 |
| Msa0556890 | AT3G25710.1 | 32.642 | 193 | 110 | 4 | 27 | 202 | 72 | 261 | 1.75e-20 | 89.7 |
Find 48 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTCTTCTCCTCTTATT+TGG | 0.100613 | 4_1:-55127073 | None:intergenic |
| GAACCATATGACATTAAATT+AGG | 0.253041 | 4_1:+55126767 | Msa0556890:CDS |
| ACCACCACATTCATTGGTTT+TGG | 0.275049 | 4_1:+55124794 | Msa0556890:CDS |
| TAGCTTCTTTGAAGAATCAT+AGG | 0.317081 | 4_1:+55124895 | Msa0556890:CDS |
| GTCATCACCACCACATTCAT+TGG | 0.344688 | 4_1:+55124788 | Msa0556890:CDS |
| AGAAGAAGGGAGAGAATAAA+TGG | 0.348920 | 4_1:+55124930 | Msa0556890:CDS |
| TATGACATTAAATTAGGATA+TGG | 0.351083 | 4_1:+55126773 | Msa0556890:CDS |
| AATCAAACTTTGGATAACTT+TGG | 0.378387 | 4_1:+55124750 | Msa0556890:CDS |
| TTCACTTCATCAACTTCTGT+TGG | 0.395317 | 4_1:-55126740 | None:intergenic |
| TATCCTAATTTAATGTCATA+TGG | 0.399856 | 4_1:-55126770 | None:intergenic |
| CAAGACTACGTAATGTTTCA+AGG | 0.407591 | 4_1:-55124956 | None:intergenic |
| TTGAGGTCACATAGTATCTC+AGG | 0.408328 | 4_1:-55126836 | None:intergenic |
| TCTTCTTCAATTTCTTCACT+TGG | 0.420059 | 4_1:-55126685 | None:intergenic |
| GAACTTCATATCCAAATAAG+AGG | 0.441039 | 4_1:+55127062 | Msa0556890:CDS |
| GGGAAGCAGAGAGGAGAAGA+AGG | 0.448212 | 4_1:+55124916 | Msa0556890:CDS |
| ACTGGATTCTGTGCTGGAAA+AGG | 0.471850 | 4_1:+55127012 | Msa0556890:CDS |
| CAAGGCACTGGATTCTGTGC+TGG | 0.480944 | 4_1:+55127006 | Msa0556890:CDS |
| GAGTTTGTTCAATCAAACTT+TGG | 0.484332 | 4_1:+55124740 | Msa0556890:CDS |
| GGAAGCAGAGAGGAGAAGAA+GGG | 0.491306 | 4_1:+55124917 | Msa0556890:CDS |
| TGTAGCTTCCACTCAACAAA+AGG | 0.500104 | 4_1:+55124977 | Msa0556890:CDS |
| GGAAAAGGCTTCTAACTCAA+TGG | 0.501654 | 4_1:+55127027 | Msa0556890:CDS |
| TTGTCTTTACATGTTGCAAA+GGG | 0.509752 | 4_1:+55126936 | Msa0556890:CDS |
| AAATGTCAACATTGGAAAGC+AGG | 0.511259 | 4_1:+55126900 | Msa0556890:CDS |
| GAATGAGAAGGAAAAGGTGG+TGG | 0.516295 | 4_1:+55124818 | Msa0556890:CDS |
| GATAACTTTGGAGCTTCCAA+TGG | 0.517984 | 4_1:+55124762 | Msa0556890:CDS |
| CATGGATCTTGTTCATGCTA+AGG | 0.518273 | 4_1:+55127127 | Msa0556890:CDS |
| TTTGTCTTTACATGTTGCAA+AGG | 0.523070 | 4_1:+55126935 | Msa0556890:CDS |
| AAATGTTGTTCACAAGGCAC+TGG | 0.530660 | 4_1:+55126994 | Msa0556890:CDS |
| GATGAGATTTCTGAGGTGAA+AGG | 0.532394 | 4_1:+55124870 | Msa0556890:CDS |
| TTTGGAGAATGAGAAGGAAA+AGG | 0.540805 | 4_1:+55124812 | Msa0556890:CDS |
| ATGGATCTTGTTCATGCTAA+GGG | 0.558202 | 4_1:+55127128 | Msa0556890:CDS |
| GAAGGCAGAAATGTCAACAT+TGG | 0.560990 | 4_1:+55126892 | Msa0556890:CDS |
| AGCTTCTTTGAAGAATCATA+GGG | 0.564794 | 4_1:+55124896 | Msa0556890:CDS |
| GAAATTGAAGAAGAATGCAA+TGG | 0.567321 | 4_1:+55126694 | Msa0556890:CDS |
| GGAGTGCCCTGTTACTGAAA+AGG | 0.568614 | 4_1:+55124839 | Msa0556890:CDS |
| TCTACCTCTTCATGCAGCCA+TGG | 0.585535 | 4_1:+55127109 | Msa0556890:CDS |
| AGATCCATGGCTGCATGAAG+AGG | 0.593504 | 4_1:-55127113 | None:intergenic |
| GGAGAATGAGAAGGAAAAGG+TGG | 0.603497 | 4_1:+55124815 | Msa0556890:CDS |
| TGCCCTGTTACTGAAAAGGT+TGG | 0.605529 | 4_1:+55124843 | Msa0556890:CDS |
| TATTGCAAATGTTGTTCACA+AGG | 0.609473 | 4_1:+55126988 | Msa0556890:CDS |
| CTTAGCATGAACAAGATCCA+TGG | 0.618302 | 4_1:-55127126 | None:intergenic |
| TTCTCCAAAACCAATGAATG+TGG | 0.622319 | 4_1:-55124798 | None:intergenic |
| TGGTGGTGATGACAATCCAT+TGG | 0.624935 | 4_1:-55124778 | None:intergenic |
| TGGTAAAGATGAGATTTCTG+AGG | 0.632391 | 4_1:+55124863 | Msa0556890:CDS |
| ACTTCAACTTCAACTAGTGA+AGG | 0.632952 | 4_1:+55126874 | Msa0556890:CDS |
| AATGCAATGGAAGCAAGCAA+AGG | 0.642370 | 4_1:+55126707 | Msa0556890:CDS |
| TCCAAAACCAATGAATGTGG+TGG | 0.695002 | 4_1:-55124795 | None:intergenic |
| AGAATCATAGGGAAGCAGAG+AGG | 0.734182 | 4_1:+55124907 | Msa0556890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATAATTATTATTTTTT+TGG | - | chr4_1:55126566-55126585 | None:intergenic | 0.0% |
| !!! | TTTCATTTTAATTGTAAATT+CGG | + | chr4_1:55125054-55125073 | Msa0556890:intron | 10.0% |
| !!! | TTCTAAAATATTTTAATTGA+TGG | + | chr4_1:55125086-55125105 | Msa0556890:intron | 10.0% |
| !!! | TAAAGTATTTTTTATTCTAA+AGG | - | chr4_1:55125711-55125730 | None:intergenic | 10.0% |
| !!! | TGATAATTTTAAAAGAAAAA+TGG | + | chr4_1:55125822-55125841 | Msa0556890:intron | 10.0% |
| !! | GATGATTATAATATTAATAT+CGG | - | chr4_1:55126337-55126356 | None:intergenic | 10.0% |
| !!! | ATAATTATTATTTTTTTGGA+AGG | - | chr4_1:55126562-55126581 | None:intergenic | 10.0% |
| !! | TAAATAAGCATTAACAAATA+AGG | - | chr4_1:55125767-55125786 | None:intergenic | 15.0% |
| !! | CATTATTGTAATTAAAGTAA+AGG | + | chr4_1:55125896-55125915 | Msa0556890:intron | 15.0% |
| !! | ATTTAATGGAAAGTTGAAAT+TGG | + | chr4_1:55125314-55125333 | Msa0556890:intron | 20.0% |
| !! | TTTAATGGAAAGTTGAAATT+GGG | + | chr4_1:55125315-55125334 | Msa0556890:intron | 20.0% |
| !!! | AAGATATAGTTTTGGTTTTT+AGG | + | chr4_1:55125345-55125364 | Msa0556890:intron | 20.0% |
| !!! | TCAGAATTTTGATATTGAAT+AGG | + | chr4_1:55125487-55125506 | Msa0556890:intron | 20.0% |
| !!! | CAGAATTTTGATATTGAATA+GGG | + | chr4_1:55125488-55125507 | Msa0556890:intron | 20.0% |
| !! | AGAAATAAACACAAACTAAA+GGG | - | chr4_1:55125540-55125559 | None:intergenic | 20.0% |
| !! | AATACATATGATATCGTATA+TGG | + | chr4_1:55125608-55125627 | Msa0556890:intron | 20.0% |
| !! | AATATCATGAACTCTATAAT+TGG | - | chr4_1:55126055-55126074 | None:intergenic | 20.0% |
| !! | CTAAATTAAGTTCAAATATG+TGG | + | chr4_1:55126452-55126471 | Msa0556890:intron | 20.0% |
| !!! | ATATGTTGAATTTGATTTTG+TGG | + | chr4_1:55126604-55126623 | Msa0556890:intron | 20.0% |
| !!! | TATGTTGAATTTGATTTTGT+GGG | + | chr4_1:55126605-55126624 | Msa0556890:intron | 20.0% |
| !! | TATCCTAATTTAATGTCATA+TGG | - | chr4_1:55126773-55126792 | None:intergenic | 20.0% |
| !! | TATGACATTAAATTAGGATA+TGG | + | chr4_1:55126773-55126792 | Msa0556890:CDS | 20.0% |
| ! | AATCAAACTTTGGATAACTT+TGG | + | chr4_1:55124750-55124769 | Msa0556890:CDS | 25.0% |
| ! | TGGATTATGAACAAAATAGT+TGG | + | chr4_1:55125106-55125125 | Msa0556890:intron | 25.0% |
| ! | AAGGGAATTGATAGATTTAA+TGG | + | chr4_1:55125300-55125319 | Msa0556890:intron | 25.0% |
| ! | ATCTTTGTTCAAACTTAAAC+TGG | - | chr4_1:55125375-55125394 | None:intergenic | 25.0% |
| ! | AGGTGAGAATGAAATATAAT+TGG | + | chr4_1:55125417-55125436 | Msa0556890:intron | 25.0% |
| ! | GGTGAGAATGAAATATAATT+GGG | + | chr4_1:55125418-55125437 | Msa0556890:intron | 25.0% |
| ! | CAGAAATAAACACAAACTAA+AGG | - | chr4_1:55125541-55125560 | None:intergenic | 25.0% |
| ! | ACTTCAAATTTCAAAACTTG+TGG | - | chr4_1:55125875-55125894 | None:intergenic | 25.0% |
| ! | GAGTTCATGATATTAGTATA+TGG | + | chr4_1:55126061-55126080 | Msa0556890:intron | 25.0% |
| ! | TAATGAATGATTTCCAGTTT+GGG | - | chr4_1:55126088-55126107 | None:intergenic | 25.0% |
| ! | TTAATGAATGATTTCCAGTT+TGG | - | chr4_1:55126089-55126108 | None:intergenic | 25.0% |
| ! | AACAAATAAAGATAAGATGG+CGG | - | chr4_1:55126184-55126203 | None:intergenic | 25.0% |
| ! | TTTGTTGCCTAACTTTATAA+TGG | + | chr4_1:55126198-55126217 | Msa0556890:intron | 25.0% |
| !! | TAACTTTATAATGGTGATGT+GGG | + | chr4_1:55126207-55126226 | Msa0556890:intron | 25.0% |
| ! | GGGCAATTAATATAATACTA+TGG | + | chr4_1:55126228-55126247 | Msa0556890:intron | 25.0% |
| !!! | ATATTAATATCGGAGTATTG+AGG | - | chr4_1:55126327-55126346 | None:intergenic | 25.0% |
| !!! | ACAACTGAGTTGATTTATTA+AGG | - | chr4_1:55126369-55126388 | None:intergenic | 25.0% |
| ! | TTTGGAAGGAAAAAAATTGT+TGG | - | chr4_1:55126548-55126567 | None:intergenic | 25.0% |
| ! | GAACCATATGACATTAAATT+AGG | + | chr4_1:55126767-55126786 | Msa0556890:CDS | 25.0% |
| ! | GAGTTTGTTCAATCAAACTT+TGG | + | chr4_1:55124740-55124759 | Msa0556890:CDS | 30.0% |
| ! | TAGCTTCTTTGAAGAATCAT+AGG | + | chr4_1:55124895-55124914 | Msa0556890:CDS | 30.0% |
| ! | AGCTTCTTTGAAGAATCATA+GGG | + | chr4_1:55124896-55124915 | Msa0556890:CDS | 30.0% |
| ! | AAAACATACCTTTTGTTGAG+TGG | - | chr4_1:55124988-55125007 | None:intergenic | 30.0% |
| !!! | TCAATCTGATTTTGAAGTGT+CGG | - | chr4_1:55125156-55125175 | None:intergenic | 30.0% |
| ACACTTCAAAATCAGATTGA+AGG | + | chr4_1:55125156-55125175 | Msa0556890:intron | 30.0% | |
| ! | TTGACAATACATTTTTCCCT+CGG | - | chr4_1:55125447-55125466 | None:intergenic | 30.0% |
| AAACACAAACTAAAGGGATA+TGG | - | chr4_1:55125534-55125553 | None:intergenic | 30.0% | |
| AAAGGATTCTGATTGCATTA+TGG | + | chr4_1:55125914-55125933 | Msa0556890:intron | 30.0% | |
| GCATTATGGTTGTCATTATA+TGG | + | chr4_1:55125928-55125947 | Msa0556890:intron | 30.0% | |
| ! | TACTGTTTGCTAAAGTCAAA+TGG | + | chr4_1:55125969-55125988 | Msa0556890:intron | 30.0% |
| GGCAACAAATAAAGATAAGA+TGG | - | chr4_1:55126187-55126206 | None:intergenic | 30.0% | |
| CACATCACCATTATAAAGTT+AGG | - | chr4_1:55126208-55126227 | None:intergenic | 30.0% | |
| ! | CTAACTTTATAATGGTGATG+TGG | + | chr4_1:55126206-55126225 | Msa0556890:intron | 30.0% |
| ! | AACTTTATAATGGTGATGTG+GGG | + | chr4_1:55126208-55126227 | Msa0556890:intron | 30.0% |
| TGATTTATTAAGGTGGATGA+AGG | - | chr4_1:55126359-55126378 | None:intergenic | 30.0% | |
| !! | ACTGAGTTGATTTATTAAGG+TGG | - | chr4_1:55126366-55126385 | None:intergenic | 30.0% |
| ATTCAAGACAATGTTACCAA+AGG | + | chr4_1:55126415-55126434 | Msa0556890:intron | 30.0% | |
| !! | AATTTGATTTTGTGGGTCAA+TGG | + | chr4_1:55126612-55126631 | Msa0556890:intron | 30.0% |
| ATGGTTCATTACTCTTTAGA+TGG | + | chr4_1:55126631-55126650 | Msa0556890:intron | 30.0% | |
| TCTTCTTCAATTTCTTCACT+TGG | - | chr4_1:55126688-55126707 | None:intergenic | 30.0% | |
| GAAATTGAAGAAGAATGCAA+TGG | + | chr4_1:55126694-55126713 | Msa0556890:CDS | 30.0% | |
| TTTGTCTTTACATGTTGCAA+AGG | + | chr4_1:55126935-55126954 | Msa0556890:CDS | 30.0% | |
| TTGTCTTTACATGTTGCAAA+GGG | + | chr4_1:55126936-55126955 | Msa0556890:CDS | 30.0% | |
| !!! | AGGGAATAGTTTTAATGTTG+AGG | + | chr4_1:55126955-55126974 | Msa0556890:CDS | 30.0% |
| TATTGCAAATGTTGTTCACA+AGG | + | chr4_1:55126988-55127007 | Msa0556890:CDS | 30.0% | |
| GAACTTCATATCCAAATAAG+AGG | + | chr4_1:55127062-55127081 | Msa0556890:CDS | 30.0% | |
| TTCTCCAAAACCAATGAATG+TGG | - | chr4_1:55124801-55124820 | None:intergenic | 35.0% | |
| !!! | ATTGGTTTTGGAGAATGAGA+AGG | + | chr4_1:55124806-55124825 | Msa0556890:CDS | 35.0% |
| TTTGGAGAATGAGAAGGAAA+AGG | + | chr4_1:55124812-55124831 | Msa0556890:CDS | 35.0% | |
| ! | TACCAACCTTTTCAGTAACA+GGG | - | chr4_1:55124848-55124867 | None:intergenic | 35.0% |
| ! | TTACCAACCTTTTCAGTAAC+AGG | - | chr4_1:55124849-55124868 | None:intergenic | 35.0% |
| TGGTAAAGATGAGATTTCTG+AGG | + | chr4_1:55124863-55124882 | Msa0556890:CDS | 35.0% | |
| AGAAGAAGGGAGAGAATAAA+TGG | + | chr4_1:55124930-55124949 | Msa0556890:CDS | 35.0% | |
| CAAGACTACGTAATGTTTCA+AGG | - | chr4_1:55124959-55124978 | None:intergenic | 35.0% | |
| CAAAAAGAGCAATGAAAGCA+AGG | - | chr4_1:55125019-55125038 | None:intergenic | 35.0% | |
| CTTCAAAATCAGATTGAAGG+TGG | + | chr4_1:55125159-55125178 | Msa0556890:intron | 35.0% | |
| ATTAAGCCCTAAAAGAGACA+CGG | - | chr4_1:55125228-55125247 | None:intergenic | 35.0% | |
| TCTATAAAATGCATGTGCTG+TGG | + | chr4_1:55125269-55125288 | Msa0556890:intron | 35.0% | |
| ! | GTGAGGGAAAGATATAGTTT+TGG | + | chr4_1:55125337-55125356 | Msa0556890:intron | 35.0% |
| AGATTGCAATACAAGCTTTG+AGG | + | chr4_1:55125391-55125410 | Msa0556890:intron | 35.0% | |
| AAATATAATTGGGTACCCGA+GGG | + | chr4_1:55125428-55125447 | Msa0556890:intron | 35.0% | |
| ! | TGACAATACATTTTTCCCTC+GGG | - | chr4_1:55125446-55125465 | None:intergenic | 35.0% |
| AAATATGTGCAAGTCGTAGA+AGG | + | chr4_1:55125561-55125580 | Msa0556890:intron | 35.0% | |
| TTCTCTTAAGTCTCGAGAAT+TGG | - | chr4_1:55125671-55125690 | None:intergenic | 35.0% | |
| ATCAAAGAGCTAGCATGAAA+GGG | - | chr4_1:55125806-55125825 | None:intergenic | 35.0% | |
| TATCAAAGAGCTAGCATGAA+AGG | - | chr4_1:55125807-55125826 | None:intergenic | 35.0% | |
| CATGAACTCTATAATTGGTG+TGG | - | chr4_1:55126050-55126069 | None:intergenic | 35.0% | |
| ATTAGTATATGGTCCCAAAC+TGG | + | chr4_1:55126072-55126091 | Msa0556890:intron | 35.0% | |
| !! | AGTCAAGTTGATTGATCCTT+TGG | - | chr4_1:55126434-55126453 | None:intergenic | 35.0% |
| TTCACTTCATCAACTTCTGT+TGG | - | chr4_1:55126743-55126762 | None:intergenic | 35.0% | |
| !!! | GTGCATCAATTGCTTTTTTG+AGG | - | chr4_1:55126856-55126875 | None:intergenic | 35.0% |
| ACTTCAACTTCAACTAGTGA+AGG | + | chr4_1:55126874-55126893 | Msa0556890:CDS | 35.0% | |
| AAATGTCAACATTGGAAAGC+AGG | + | chr4_1:55126900-55126919 | Msa0556890:CDS | 35.0% | |
| CACATTCTTCTCCTCTTATT+TGG | - | chr4_1:55127076-55127095 | None:intergenic | 35.0% | |
| !! | GATAACTTTGGAGCTTCCAA+TGG | + | chr4_1:55124762-55124781 | Msa0556890:CDS | 40.0% |
| !!! | ACCACCACATTCATTGGTTT+TGG | + | chr4_1:55124794-55124813 | Msa0556890:CDS | 40.0% |
| TCCAAAACCAATGAATGTGG+TGG | - | chr4_1:55124798-55124817 | None:intergenic | 40.0% | |
| !! | GATGAGATTTCTGAGGTGAA+AGG | + | chr4_1:55124870-55124889 | Msa0556890:CDS | 40.0% |
| TGTAGCTTCCACTCAACAAA+AGG | + | chr4_1:55124977-55124996 | Msa0556890:CDS | 40.0% | |
| AAGAGCAATGAAAGCAAGGA+AGG | - | chr4_1:55125015-55125034 | None:intergenic | 40.0% | |
| ! | TAGCATCCGTGTCTCTTTTA+GGG | + | chr4_1:55125219-55125238 | Msa0556890:intron | 40.0% |
| TGGAAAGTTGAAATTGGGTG+AGG | + | chr4_1:55125320-55125339 | Msa0556890:intron | 40.0% | |
| GGAAAGTTGAAATTGGGTGA+GGG | + | chr4_1:55125321-55125340 | Msa0556890:intron | 40.0% | |
| !! | CAATACAAGCTTTGAGGCAT+AGG | + | chr4_1:55125397-55125416 | Msa0556890:intron | 40.0% |
| GAAATATAATTGGGTACCCG+AGG | + | chr4_1:55125427-55125446 | Msa0556890:intron | 40.0% | |
| GGAAAGAGGAAGACAACAAA+TGG | - | chr4_1:55126306-55126325 | None:intergenic | 40.0% | |
| !! | TATCGGAGTATTGAGGAAAG+AGG | - | chr4_1:55126320-55126339 | None:intergenic | 40.0% |
| AATGCAATGGAAGCAAGCAA+AGG | + | chr4_1:55126707-55126726 | Msa0556890:CDS | 40.0% | |
| TTGAGGTCACATAGTATCTC+AGG | - | chr4_1:55126839-55126858 | None:intergenic | 40.0% | |
| GAAGGCAGAAATGTCAACAT+TGG | + | chr4_1:55126892-55126911 | Msa0556890:CDS | 40.0% | |
| AAATGTTGTTCACAAGGCAC+TGG | + | chr4_1:55126994-55127013 | Msa0556890:CDS | 40.0% | |
| GGAAAAGGCTTCTAACTCAA+TGG | + | chr4_1:55127027-55127046 | Msa0556890:CDS | 40.0% | |
| ! | TGGTGGTGATGACAATCCAT+TGG | - | chr4_1:55124781-55124800 | None:intergenic | 45.0% |
| GTCATCACCACCACATTCAT+TGG | + | chr4_1:55124788-55124807 | Msa0556890:CDS | 45.0% | |
| GGAGAATGAGAAGGAAAAGG+TGG | + | chr4_1:55124815-55124834 | Msa0556890:CDS | 45.0% | |
| GAATGAGAAGGAAAAGGTGG+TGG | + | chr4_1:55124818-55124837 | Msa0556890:CDS | 45.0% | |
| TGCCCTGTTACTGAAAAGGT+TGG | + | chr4_1:55124843-55124862 | Msa0556890:CDS | 45.0% | |
| AGAATCATAGGGAAGCAGAG+AGG | + | chr4_1:55124907-55124926 | Msa0556890:CDS | 45.0% | |
| ! | CTAGCATCCGTGTCTCTTTT+AGG | + | chr4_1:55125218-55125237 | Msa0556890:intron | 45.0% |
| ATGTGCTGTGGAGATGAGAA+AGG | + | chr4_1:55125281-55125300 | Msa0556890:intron | 45.0% | |
| TGTGCTGTGGAGATGAGAAA+GGG | + | chr4_1:55125282-55125301 | Msa0556890:intron | 45.0% | |
| ACTGGATTCTGTGCTGGAAA+AGG | + | chr4_1:55127012-55127031 | Msa0556890:CDS | 45.0% | |
| ! | GGAGTGCCCTGTTACTGAAA+AGG | + | chr4_1:55124839-55124858 | Msa0556890:CDS | 50.0% |
| GGAAGCAGAGAGGAGAAGAA+GGG | + | chr4_1:55124917-55124936 | Msa0556890:CDS | 50.0% | |
| TCTACCTCTTCATGCAGCCA+TGG | + | chr4_1:55127109-55127128 | Msa0556890:CDS | 50.0% | |
| AGATCCATGGCTGCATGAAG+AGG | - | chr4_1:55127116-55127135 | None:intergenic | 50.0% | |
| GGGAAGCAGAGAGGAGAAGA+AGG | + | chr4_1:55124916-55124935 | Msa0556890:CDS | 55.0% | |
| !! | CAAGGCACTGGATTCTGTGC+TGG | + | chr4_1:55127006-55127025 | Msa0556890:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 55124690 | 55127147 | 55124690 | ID=Msa0556890;Name=Msa0556890 |
| chr4_1 | mRNA | 55124690 | 55127147 | 55124690 | ID=Msa0556890-mRNA-1;Parent=Msa0556890;Name=Msa0556890-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|1|1|1|2|0|268 |
| chr4_1 | exon | 55124690 | 55124998 | 55124690 | ID=Msa0556890-mRNA-1:exon:16421;Parent=Msa0556890-mRNA-1 |
| chr4_1 | exon | 55126650 | 55127147 | 55126650 | ID=Msa0556890-mRNA-1:exon:16422;Parent=Msa0556890-mRNA-1 |
| chr4_1 | CDS | 55124690 | 55124998 | 55124690 | ID=Msa0556890-mRNA-1:cds;Parent=Msa0556890-mRNA-1 |
| chr4_1 | CDS | 55126650 | 55127147 | 55126650 | ID=Msa0556890-mRNA-1:cds;Parent=Msa0556890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
