AlfalfaGEDB | Msa0558330

M. sativa cultivar zhongmu-4 / Msa0558330

KEGG: -
GO: -
PFAM: PF00439.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0558330	XP_003608183.2	95.332	557	26	0	1	557	1	557	0.0	1069

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0558330	G7JQR8	95.332	557	26	0	1	557	1	557	0.0	1069

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TFs/TRs:

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Gene ID	Type	Classification
Msa0558330	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0558330	Msa0613090	0.851196	1.038545e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0558330	MtrunA17_Chr4g0047931	95.332	557	26	0	1	557	1	557	0.0	1069
Msa0558330	MtrunA17_Chr2g0281431	51.667	480	205	11	95	556	367	837	6.50e-122	379
Msa0558330	MtrunA17_Chr2g0281431	61.091	275	97	5	9	278	4	273	7.16e-93	302
Msa0558330	MtrunA17_Chr2g0281431	55.851	188	74	4	95	278	183	365	1.44e-44	169
Msa0558330	MtrunA17_Chr2g0281431	54.255	188	77	4	95	278	275	457	4.59e-44	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0558330	AT1G61215.1	59.877	162	57	5	9	166	14	171	5.43e-49	177
Msa0558330	AT1G61215.1	37.092	337	169	13	201	514	111	427	1.24e-34	137
Msa0558330	AT1G61215.2	37.092	337	169	13	201	514	92	408	2.01e-34	135
Msa0558330	AT1G61215.2	54.918	122	48	4	49	166	34	152	2.29e-26	112
Msa0558330	AT2G42150.1	29.960	247	132	6	8	239	15	235	1.38e-17	86.7
Msa0558330	AT2G42150.1	28.358	134	89	3	357	485	272	403	2.05e-12	70.5
Msa0558330	AT3G60110.1	30.625	160	84	2	4	143	47	199	2.04e-15	79.7
Msa0558330	AT2G44430.1	39.655	116	47	3	9	101	50	165	2.92e-14	76.3
Msa0558330	AT3G57980.1	37.815	119	55	2	8	108	15	132	8.22e-14	74.7
Msa0558330	AT3G57980.2	37.815	119	55	2	8	108	15	132	8.54e-14	74.7

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Find 151 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAAGACGGAGAACT+AGG	0.503354	4_1:+57026184	Msa0558330:CDS
AAACTGGTCTCATGAATGCC+AGG	0.546467	4_1:+57024348	Msa0558330:CDS
AAAGCCAAGAAGCCTAGTAG+TGG	0.670404	4_1:+57026048	Msa0558330:CDS
AAAGGAATGAGGTAAGAAGA+AGG	0.558708	4_1:-57021328	None:intergenic
AAAGGAGAGGAAAGAGAAAG+AGG	0.432152	4_1:+57024773	Msa0558330:CDS
AAATGAAGGAAAAGAAAAGA+CGG	0.493555	4_1:+57026175	Msa0558330:CDS
AAATGGAGAAGTGACAACAT+AGG	0.622736	4_1:+57026346	Msa0558330:three_prime_UTR
AACCCTAATAAGATGCTCGT+CGG	0.594773	4_1:-57021476	None:intergenic
AACGTTAGCACCGGGTGCGT+AGG	0.596185	4_1:+57021557	Msa0558330:five_prime_UTR
AAGAAATTCATTTGATTGAG+AGG	0.403431	4_1:-57021377	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCATCTTATTAGGGTTAAT+CGG	+	chr4_1:57021482-57021501	Msa0558330:five_prime_UTR	30.0%
TAAATTGCAAGTCTCTATTC+TGG	+	chr4_1:57022438-57022457	Msa0558330:intron	30.0%
AAAATTGTGTTCTCTTGACA+AGG	+	chr4_1:57022505-57022524	Msa0558330:intron	30.0%
TTAAAGCAATGCATGATGTA+TGG	+	chr4_1:57022657-57022676	Msa0558330:intron	30.0%
TTTGCGTATACAATGGTTAT+GGG	+	chr4_1:57022712-57022731	Msa0558330:intron	30.0%
ATATATGCATATGGTTGTTG+AGG	+	chr4_1:57022800-57022819	Msa0558330:intron	30.0%
ATGTGCTTAAAATAGAGGTT+TGG	-	chr4_1:57022868-57022887	None:intergenic	30.0%
CTGTTGCAATTCTTCATATT+TGG	-	chr4_1:57023588-57023607	None:intergenic	30.0%
GAGAAATCAGAAGATTCAAT+TGG	+	chr4_1:57023878-57023897	Msa0558330:CDS	30.0%
GACATAATCTCAGCTTAAAA+AGG	-	chr4_1:57023927-57023946	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	57021087	57026376	57021087	ID=Msa0558330;Name=Msa0558330
chr4_1	mRNA	57021087	57026376	57021087	ID=Msa0558330-mRNA-1;Parent=Msa0558330;Name=Msa0558330-mRNA-1;_AED=0.08;_eAED=0.08;_QI=557\|1\|1\|1\|1\|1\|5\|164\|557
chr4_1	exon	57021087	57021790	57021087	ID=Msa0558330-mRNA-1:exon:17230;Parent=Msa0558330-mRNA-1
chr4_1	exon	57023575	57023624	57023575	ID=Msa0558330-mRNA-1:exon:17231;Parent=Msa0558330-mRNA-1
chr4_1	exon	57023823	57023900	57023823	ID=Msa0558330-mRNA-1:exon:17232;Parent=Msa0558330-mRNA-1
chr4_1	exon	57024156	57025032	57024156	ID=Msa0558330-mRNA-1:exon:17233;Parent=Msa0558330-mRNA-1
chr4_1	exon	57025691	57026376	57025691	ID=Msa0558330-mRNA-1:exon:17234;Parent=Msa0558330-mRNA-1
chr4_1	five_prime_UTR	57021087	57021643	57021087	ID=Msa0558330-mRNA-1:five_prime_utr;Parent=Msa0558330-mRNA-1
chr4_1	CDS	57021644	57021790	57021644	ID=Msa0558330-mRNA-1:cds;Parent=Msa0558330-mRNA-1
chr4_1	CDS	57023575	57023624	57023575	ID=Msa0558330-mRNA-1:cds;Parent=Msa0558330-mRNA-1
chr4_1	CDS	57023823	57023900	57023823	ID=Msa0558330-mRNA-1:cds;Parent=Msa0558330-mRNA-1
chr4_1	CDS	57024156	57025032	57024156	ID=Msa0558330-mRNA-1:cds;Parent=Msa0558330-mRNA-1
chr4_1	CDS	57025691	57026212	57025691	ID=Msa0558330-mRNA-1:cds;Parent=Msa0558330-mRNA-1
chr4_1	three_prime_UTR	57026213	57026376	57026213	ID=Msa0558330-mRNA-1:three_prime_utr;Parent=Msa0558330-mRNA-1

Gene Sequence

>Msa0558330

ATGGGAGCGGAAGTGATTGTGACGTGGGGGACATGGGAGGAGCTTCTTCTTGGTGGAGCTGTTATCCGGCACGGCACTGGTGATTGGTCCGTCGTCGCGGCGGAGCTCCGAGGGAGAACTCCTTCTCCTTCCGCTATTACACCCGAGGTCTGTAAAGCCAAATATGAAGAATTGCAACAGCGCTATTCAGGCTGCACGGCTTGGTATGAGGAGCTTAAGAAGAGAAGAGTAGCAGAGCTTAAGCGAGCTTTGGAGAAATCAGAAGATTCAATTGGGTCTCTTGAATCAAAGCTTGAATCCCTCAAGGCTGACAAGAATGAGAAAATAGATGATTGTCTTGTTGACAACAACTCAGTTGGACCAGAATTAGATGTTCCTTCACAGAAATTAGAGAGAGTTGAATCTTCTACTAAAGAGTTGTCAAAGGATGGGCTATCTGCTGGGAGTTTTACACATCAATCCGATACAAACTGGTCTCATGAATGCCAGGTTCCAGCAATGTCTTCTGAAGACATGGAGATCTCGCCTGGTGTTTCAGGGTCTATTGAACATGAGAAAGTTTTGAATATAGATAAGTTGACAGATACAGCTGGGAAAAGAGATGATTGTCATGTTGACAACGACTCAGTTGAACCAGAATCACATGTTCCTTCACAGAAATTGGAGAGAGTTGAATCTTCAACTAAAGAGACGTCAAAGGATGGGTTATCTGCTGGTAGTTTTACACATCAAACCCAGAAAAACTGGTCTCAAGAATGCCAAGTTCCAGCAATGTCTTCTGAAGACATGGAGATTACGCCTGGTGTTTCAGGGTCAACCGAACATGAGAAAGTTTTGAATGTAGATAAGTTGACAGAGACTGTATATGAAGGACATGGAGGGTGTTTTAAAAAAAGGAGAGGAAAGAGAAAGAGGAAGGATTGTGCCAGAAATATTAATGAAGCGAGTGTGAGAGAAAGTGATTTTTCAATTGATGTGTCCCGGCTGAAAGAAAGTTCTACCAGCAACTGTGGTGAGGTTGTCAAATCTTCTGGTGTAACTGAGGAGAACACGAACTTGAAAAAGGATGAAACGAAAGATCTGATGGCGATTTTAGATTCTGTTTTGGAAATTAAAGGTGCTTCTTGCTTCTGTCGCAAGCATGATAGCCAGAAGCGACAAAGGTACAAGCAGTTAATCCAGAGACACATGGACTTTGACACTATAAGGTCAAGAATTAGCAACAAAACAATTGATTCAGTGGTGCAACTTTTCAGAGACATGTTTCTATTGACCACCAATGCTTTGCTGTTCTACTCCAAGAACACCCGTCAATATAAGTCTGCACTACTCATGAGAGATATTGTCAAAGAAAAACTGACGGAGAACAGGAGGAATGTCATACATTCTAATGTCGACATTGTCTGCGCTACTCCTTCTTTGAAAGTCCCAAGTGTCCGCCCTTGTAACCAGAAGATTAATGTTGCAAAGGTAGCCGATGGCAGCGATCCTGCCTCGGGGGTCTCAAATAAAGCCAAGAAGCCTAGTAGTGGTGGTAGTAAAGAGAATTCTCCGTCTTCGGTGAAATCCTTACACATCAAGAAAGCTGTCGGTGGATCTAAAAAGCATGAACCTGCAACTCCGAATCTTATGAAGGAAATGAAGGAAAAGAAAAGACGGAGAACTAGGTTATGA

Protein sequence

>Msa0558330

MGAEVIVTWGTWEELLLGGAVIRHGTGDWSVVAAELRGRTPSPSAITPEVCKAKYEELQQRYSGCTAWYEELKKRRVAELKRALEKSEDSIGSLESKLESLKADKNEKIDDCLVDNNSVGPELDVPSQKLERVESSTKELSKDGLSAGSFTHQSDTNWSHECQVPAMSSEDMEISPGVSGSIEHEKVLNIDKLTDTAGKRDDCHVDNDSVEPESHVPSQKLERVESSTKETSKDGLSAGSFTHQTQKNWSQECQVPAMSSEDMEITPGVSGSTEHEKVLNVDKLTETVYEGHGGCFKKRRGKRKRKDCARNINEASVRESDFSIDVSRLKESSTSNCGEVVKSSGVTEENTNLKKDETKDLMAILDSVLEIKGASCFCRKHDSQKRQRYKQLIQRHMDFDTIRSRISNKTIDSVVQLFRDMFLLTTNALLFYSKNTRQYKSALLMRDIVKEKLTENRRNVIHSNVDIVCATPSLKVPSVRPCNQKINVAKVADGSDPASGVSNKAKKPSSGGSKENSPSSVKSLHIKKAVGGSKKHEPATPNLMKEMKEKKRRRTRL*