AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0558330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0558330 MtrunA17_Chr4g0047931 95.332 557 26 0 1 557 1 557 0.0 1069
Msa0558330 MtrunA17_Chr2g0281431 51.667 480 205 11 95 556 367 837 6.50e-122 379
Msa0558330 MtrunA17_Chr2g0281431 61.091 275 97 5 9 278 4 273 7.16e-93 302
Msa0558330 MtrunA17_Chr2g0281431 55.851 188 74 4 95 278 183 365 1.44e-44 169
Msa0558330 MtrunA17_Chr2g0281431 54.255 188 77 4 95 278 275 457 4.59e-44 167
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0558330 AT1G61215.1 59.877 162 57 5 9 166 14 171 5.43e-49 177
Msa0558330 AT1G61215.1 37.092 337 169 13 201 514 111 427 1.24e-34 137
Msa0558330 AT1G61215.2 37.092 337 169 13 201 514 92 408 2.01e-34 135
Msa0558330 AT1G61215.2 54.918 122 48 4 49 166 34 152 2.29e-26 112
Msa0558330 AT2G42150.1 29.960 247 132 6 8 239 15 235 1.38e-17 86.7
Msa0558330 AT2G42150.1 28.358 134 89 3 357 485 272 403 2.05e-12 70.5
Msa0558330 AT3G60110.1 30.625 160 84 2 4 143 47 199 2.04e-15 79.7
Msa0558330 AT2G44430.1 39.655 116 47 3 9 101 50 165 2.92e-14 76.3
Msa0558330 AT3G57980.1 37.815 119 55 2 8 108 15 132 8.22e-14 74.7
Msa0558330 AT3G57980.2 37.815 119 55 2 8 108 15 132 8.54e-14 74.7

Find 151 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATCTCGCCTGGTGTTTC+AGG 0.123019 4_1:+57024397 Msa0558330:CDS
GAGATTACGCCTGGTGTTTC+AGG 0.146830 4_1:+57024670 Msa0558330:CDS
ACATGTTCCTTCACAGAAAT+TGG 0.179613 4_1:+57024522 Msa0558330:CDS
TTTCCGACGAGCATCTTATT+AGG 0.208989 4_1:+57021473 Msa0558330:five_prime_UTR
ACTCGCTTCATTAATATTTC+TGG 0.224605 4_1:-57024806 None:intergenic
CTGTTGCAATTCTTCATATT+TGG 0.258493 4_1:-57023585 None:intergenic
ACATGGGAGGAGCTTCTTCT+TGG 0.262308 4_1:+57021674 Msa0558330:CDS
CTCATTCTTGTCAGCCTTGA+GGG 0.265381 4_1:-57024179 None:intergenic
CCTTTGCAACATTAATCTTC+TGG 0.292069 4_1:-57025987 None:intergenic
ACCACCACTACTAGGCTTCT+TGG 0.298467 4_1:-57026052 None:intergenic
CTTATATTGACGGGTGTTCT+TGG 0.307524 4_1:-57025836 None:intergenic
TATAACAAGTTTCAAATCAT+TGG 0.310397 4_1:-57026215 None:intergenic
TTCATAAGATTCGGAGTTGC+AGG 0.312088 4_1:-57026150 None:intergenic
TGTGAAGGAACATGTGATTC+TGG 0.321301 4_1:-57024514 None:intergenic
GAATTGCAACAGCGCTATTC+AGG 0.321488 4_1:+57023596 Msa0558330:CDS
TGTGAAGGAACATCTAATTC+TGG 0.326164 4_1:-57024241 None:intergenic
CCATTTGATATACTTCCTTT+TGG 0.337379 4_1:-57026329 None:intergenic
GGTGAGGTTGTCAAATCTTC+TGG 0.339149 4_1:+57024892 Msa0558330:CDS
TTCCGACGAGCATCTTATTA+GGG 0.353146 4_1:+57021474 Msa0558330:five_prime_UTR
ATTATGGTGTTGAATGCTTT+TGG 0.353330 4_1:-57021140 None:intergenic
ACATGGACTTTGACACTATA+AGG 0.354571 4_1:+57025725 Msa0558330:CDS
TTCATTTCCTTCATAAGATT+CGG 0.356180 4_1:-57026159 None:intergenic
GGAGAACACGAACTTGAAAA+AGG 0.362922 4_1:+57024924 Msa0558330:CDS
GAGAAATCAGAAGATTCAAT+TGG 0.363491 4_1:+57023878 Msa0558330:CDS
AGCAGAGCTTAAGCGAGCTT+TGG 0.364114 4_1:+57023856 Msa0558330:CDS
TCATGTACTATTAAAATTGT+TGG 0.369977 4_1:-57021251 None:intergenic
CAGAAGACATTGCTGGAACT+TGG 0.372442 4_1:-57024639 None:intergenic
AGCATCTTATTAGGGTTAAT+CGG 0.380327 4_1:+57021482 Msa0558330:five_prime_UTR
GACAACCTCACCACAGTTGC+TGG 0.380777 4_1:-57024881 None:intergenic
TTCATTTGATTGAGAGGGAC+AGG 0.387630 4_1:-57021371 None:intergenic
TGGGAGGAGCTTCTTCTTGG+TGG 0.399007 4_1:+57021677 Msa0558330:CDS
ATTCAAAACTTTCTCATGTT+CGG 0.403224 4_1:-57024698 None:intergenic
AAGAAATTCATTTGATTGAG+AGG 0.403431 4_1:-57021377 None:intergenic
TTCTTGGTGGAGCTGTTATC+CGG 0.405630 4_1:+57021690 Msa0558330:CDS
CATGTACTATTAAAATTGTT+GGG 0.407592 4_1:-57021250 None:intergenic
TCCGGCACGGCACTGGTGAT+TGG 0.416103 4_1:+57021708 Msa0558330:CDS
CACTGCTAGGGCTTGGTATG+AGG 0.418968 4_1:+57023814 Msa0558330:intron
TCAAAGGATGGGCTATCTGC+TGG 0.419315 4_1:+57024301 Msa0558330:CDS
TCTTTACTACCACCACTACT+AGG 0.422878 4_1:-57026060 None:intergenic
CACATCAATCCGATACAAAC+TGG 0.431596 4_1:+57024332 Msa0558330:CDS
AAAGGAGAGGAAAGAGAAAG+AGG 0.432152 4_1:+57024773 Msa0558330:CDS
TCTAGATTACAGTAACTAAC+TGG 0.434567 4_1:+57026249 Msa0558330:three_prime_UTR
TGATTGAGAGGGACAGGAAA+AGG 0.438254 4_1:-57021365 None:intergenic
ATGTCTTCAGAAGACATTGC+TGG 0.442846 4_1:-57024373 None:intergenic
ATGTCTTCAGAAGACATTGC+TGG 0.442846 4_1:-57024646 None:intergenic
ACATTAATCTTCTGGTTACA+AGG 0.444554 4_1:-57025979 None:intergenic
CAGAAGACATTGCTGGAACC+TGG 0.448111 4_1:-57024366 None:intergenic
TGTCAAAGTCCATGTGTCTC+TGG 0.448970 4_1:-57025717 None:intergenic
AGCGTACACGTGTACGAAGA+TGG 0.450787 4_1:+57021625 Msa0558330:exon
GAAGTGACAACATAGGATAT+TGG 0.458231 4_1:+57026353 Msa0558330:three_prime_UTR
GCTGTTATCCGGCACGGCAC+TGG 0.459398 4_1:+57021701 Msa0558330:CDS
GATGGCAGCGATCCTGCCTC+GGG 0.461840 4_1:+57026015 Msa0558330:CDS
GACAGCTTTCTTGATGTGTA+AGG 0.464881 4_1:-57026106 None:intergenic
CCAAAAGGAAGTATATCAAA+TGG 0.468725 4_1:+57026329 Msa0558330:three_prime_UTR
CGATGGCAGCGATCCTGCCT+CGG 0.469474 4_1:+57026014 Msa0558330:CDS
TAAAGAGAATTCTCCGTCTT+CGG 0.474363 4_1:+57026077 Msa0558330:CDS
AGATCTCGCCTGGTGTTTCA+GGG 0.481234 4_1:+57024398 Msa0558330:CDS
TGGTAGAACTTTCTTTCAGC+CGG 0.484226 4_1:-57024861 None:intergenic
TGGTTACAAGGGCGGACACT+TGG 0.484662 4_1:-57025967 None:intergenic
ACTAAAGAGTTGTCAAAGGA+TGG 0.489392 4_1:+57024289 Msa0558330:CDS
AGAAATCAGAAGATTCAATT+GGG 0.490341 4_1:+57023879 Msa0558330:CDS
ACCAATCACCAGTGCCGTGC+CGG 0.491886 4_1:-57021709 None:intergenic
CAATCTTTAATATTAATTCA+AGG 0.492620 4_1:+57021098 Msa0558330:five_prime_UTR
AAATGAAGGAAAAGAAAAGA+CGG 0.493555 4_1:+57026175 Msa0558330:CDS
CTTGTTGACAACAACTCAGT+TGG 0.494073 4_1:+57024217 Msa0558330:CDS
AGAAATTCATTTGATTGAGA+GGG 0.495890 4_1:-57021376 None:intergenic
AGCACCGGGTGCGTAGGATT+AGG 0.496693 4_1:+57021563 Msa0558330:five_prime_UTR
AGATTACGCCTGGTGTTTCA+GGG 0.501278 4_1:+57024671 Msa0558330:CDS
AAAAGAAAAGACGGAGAACT+AGG 0.503354 4_1:+57026184 Msa0558330:CDS
TCTCATTCTTGTCAGCCTTG+AGG 0.505573 4_1:-57024180 None:intergenic
TGGTTTCAATCAATAGGTAG+TGG 0.509373 4_1:-57021196 None:intergenic
CTGTCGCAAGCATGATAGCC+AGG 0.522128 4_1:+57025011 Msa0558330:CDS
GAAGACATGGAGATCTCGCC+TGG 0.524803 4_1:+57024388 Msa0558330:CDS
AGCGGAAGTGATTGTGACGT+GGG 0.526318 4_1:+57021649 Msa0558330:CDS
ACTAAAGAGACGTCAAAGGA+TGG 0.530356 4_1:+57024562 Msa0558330:CDS
GATAAGTTGACAGATACAGC+TGG 0.532080 4_1:+57024451 Msa0558330:CDS
GAGAGGAAAGAGAAAGAGGA+AGG 0.532691 4_1:+57024777 Msa0558330:CDS
GAATCTTATGAAGGAAATGA+AGG 0.534107 4_1:+57026161 Msa0558330:CDS
GGTAGAACTTTCTTTCAGCC+GGG 0.535651 4_1:-57024860 None:intergenic
TCAAAGGATGGGTTATCTGC+TGG 0.536634 4_1:+57024574 Msa0558330:CDS
ACTCTCTCCAATTTCTGTGA+AGG 0.536812 4_1:-57024529 None:intergenic
TTCATGAGACCAGTTTGTAT+CGG 0.538734 4_1:-57024341 None:intergenic
GGTTACAAGGGCGGACACTT+GGG 0.540653 4_1:-57025966 None:intergenic
CAACAAAACAATTGATTCAG+TGG 0.544548 4_1:+57025759 Msa0558330:CDS
TCGTCGCGGCGGAGCTCCGA+GGG 0.544805 4_1:+57021735 Msa0558330:CDS
AAACTGGTCTCATGAATGCC+AGG 0.546467 4_1:+57024348 Msa0558330:CDS
GTAGAACAGCAAAGCATTGG+TGG 0.547197 4_1:-57025812 None:intergenic
TCGGAGCTCCGCCGCGACGA+CGG 0.548546 4_1:-57021732 None:intergenic
TGCAACTCCGAATCTTATGA+AGG 0.548743 4_1:+57026152 Msa0558330:CDS
CAAAGGATGGGCTATCTGCT+GGG 0.550496 4_1:+57024302 Msa0558330:CDS
CCAGAAGATTAATGTTGCAA+AGG 0.552998 4_1:+57025987 Msa0558330:CDS
GGAGTAGAACAGCAAAGCAT+TGG 0.553418 4_1:-57025815 None:intergenic
GGCTCCTAATCCTACGCACC+CGG 0.554751 4_1:-57021567 None:intergenic
AAAGGAATGAGGTAAGAAGA+AGG 0.558708 4_1:-57021328 None:intergenic
TTATTAGGGTTAATCGGAGA+AGG 0.560583 4_1:+57021488 Msa0558330:five_prime_UTR
GTCGTCGCGGCGGAGCTCCG+AGG 0.563753 4_1:+57021734 Msa0558330:CDS
GAAGACATGGAGATTACGCC+TGG 0.563944 4_1:+57024661 Msa0558330:CDS
CGAGGCAGGATCGCTGCCAT+CGG 0.565755 4_1:-57026013 None:intergenic
ACACTTGGGACTTTCAAAGA+AGG 0.569561 4_1:-57025952 None:intergenic
CTAAAGAGTTGTCAAAGGAT+GGG 0.572945 4_1:+57024290 Msa0558330:CDS
TGTAAGGATTTCACCGAAGA+CGG 0.573201 4_1:-57026090 None:intergenic
GCGTACACGTGTACGAAGAT+GGG 0.575736 4_1:+57021626 Msa0558330:exon
TAGTGCAGACTTATATTGAC+GGG 0.575938 4_1:-57025845 None:intergenic
GGTGTAATAGCGGAAGGAGA+AGG 0.576294 4_1:-57021764 None:intergenic
GGTGGAGCTGTTATCCGGCA+CGG 0.577297 4_1:+57021695 Msa0558330:CDS
ACTCTCTCTAATTTCTGTGA+AGG 0.579129 4_1:-57024256 None:intergenic
GCCAAGAAGCCTAGTAGTGG+TGG 0.579439 4_1:+57026051 Msa0558330:CDS
GGATGAAACGAAAGATCTGA+TGG 0.581786 4_1:+57024945 Msa0558330:CDS
CTAAAGAGACGTCAAAGGAT+GGG 0.581958 4_1:+57024563 Msa0558330:CDS
AGCAATGTCTTCTGAAGACA+TGG 0.586266 4_1:+57024375 Msa0558330:CDS
AGCAATGTCTTCTGAAGACA+TGG 0.586266 4_1:+57024648 Msa0558330:CDS
ACCTCGGGTGTAATAGCGGA+AGG 0.590376 4_1:-57021770 None:intergenic
TTCTACTAAAGAGTTGTCAA+AGG 0.593159 4_1:+57024285 Msa0558330:CDS
AACCCTAATAAGATGCTCGT+CGG 0.594773 4_1:-57021476 None:intergenic
AACGTTAGCACCGGGTGCGT+AGG 0.596185 4_1:+57021557 Msa0558330:five_prime_UTR
AAGGAGAAGGAGTTCTCCCT+CGG 0.596440 4_1:-57021751 None:intergenic
TTTGATAGCAGAAGCGACAA+AGG 0.602191 4_1:+57025680 Msa0558330:intron
AATTAATATTAAAGATTGCG+CGG 0.605671 4_1:-57021093 None:intergenic
TCCTTCCGCTATTACACCCG+AGG 0.606450 4_1:+57021769 Msa0558330:CDS
ATCAAAGCTTGAATCCCTCA+AGG 0.606788 4_1:+57024165 Msa0558330:CDS
TTGACAGAGACTGTATATGA+AGG 0.607121 4_1:+57024730 Msa0558330:CDS
GAGCGGAAGTGATTGTGACG+TGG 0.615869 4_1:+57021648 Msa0558330:CDS
CATTAATCTTCTGGTTACAA+GGG 0.620404 4_1:-57025978 None:intergenic
CACATCAAGAAAGCTGTCGG+TGG 0.621814 4_1:+57026111 Msa0558330:CDS
TATTACCTCGGGTGTAATAG+CGG 0.621851 4_1:-57021774 None:intergenic
AAATGGAGAAGTGACAACAT+AGG 0.622736 4_1:+57026346 Msa0558330:three_prime_UTR
TGGTGATTGGTCCGTCGTCG+CGG 0.623067 4_1:+57021721 Msa0558330:CDS
TTAGGGTTAATCGGAGAAGG+TGG 0.626812 4_1:+57021491 Msa0558330:five_prime_UTR
AGATTACAGTAACTAACTGG+TGG 0.627243 4_1:+57026252 Msa0558330:three_prime_UTR
GAAAGTTCTACCAGCAACTG+TGG 0.627439 4_1:+57024871 Msa0558330:CDS
TCAATAGACCCTGAAACACC+AGG 0.632152 4_1:-57024406 None:intergenic
TTCAACTAAAGAGACGTCAA+AGG 0.633541 4_1:+57024558 Msa0558330:CDS
GTAGTGCAGACTTATATTGA+CGG 0.634239 4_1:-57025846 None:intergenic
TCGGTTGACCCTGAAACACC+AGG 0.635035 4_1:-57024679 None:intergenic
TAATCTTCTGGTTACAAGGG+CGG 0.635573 4_1:-57025975 None:intergenic
TTCTACCAGCAACTGTGGTG+AGG 0.636519 4_1:+57024876 Msa0558330:CDS
CAAATCTTCTGGTGTAACTG+AGG 0.640200 4_1:+57024903 Msa0558330:CDS
TTACACATCAAGAAAGCTGT+CGG 0.641394 4_1:+57026108 Msa0558330:CDS
ATAAGTTGACAGATACAGCT+GGG 0.644236 4_1:+57024452 Msa0558330:CDS
AATGTTGCAAAGGTAGCCGA+TGG 0.645708 4_1:+57025997 Msa0558330:CDS
GCGGAAGTGATTGTGACGTG+GGG 0.650849 4_1:+57021650 Msa0558330:CDS
TGGCAGCGATCCTGCCTCGG+GGG 0.651961 4_1:+57026017 Msa0558330:CDS
ATGGCAGCGATCCTGCCTCG+GGG 0.654156 4_1:+57026016 Msa0558330:CDS
GAGACTGTATATGAAGGACA+TGG 0.658527 4_1:+57024736 Msa0558330:CDS
AAAGCCAAGAAGCCTAGTAG+TGG 0.670404 4_1:+57026048 Msa0558330:CDS
CTGTATATGAAGGACATGGA+GGG 0.672772 4_1:+57024740 Msa0558330:CDS
GCAGTTAATCCAGAGACACA+TGG 0.675440 4_1:+57025708 Msa0558330:CDS
ACTGTATATGAAGGACATGG+AGG 0.676971 4_1:+57024739 Msa0558330:CDS
CACGTGTACGAAGATGGGAG+CGG 0.678942 4_1:+57021631 Msa0558330:exon
CGGAAGTGATTGTGACGTGG+GGG 0.689342 4_1:+57021651 Msa0558330:CDS
TGATTGGTCCGTCGTCGCGG+CGG 0.715637 4_1:+57021724 Msa0558330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAATAAATAAATAAA+GGG - chr4_1:57022020-57022039 None:intergenic 0.0%
!! TATAATAAATAAATAAATAA+AGG - chr4_1:57022021-57022040 None:intergenic 0.0%
!! AATATTAATATTTATTACCT+CGG - chr4_1:57021789-57021808 None:intergenic 10.0%
!! ATTCAAACATAATTTAATAT+TGG + chr4_1:57022079-57022098 Msa0558330:intron 10.0%
!!! TTTTTATCATAAACTAAATT+GGG - chr4_1:57022236-57022255 None:intergenic 10.0%
!!! TTTTTTATCATAAACTAAAT+TGG - chr4_1:57022237-57022256 None:intergenic 10.0%
!! AAAATGCTAAAATATATTAA+TGG + chr4_1:57022924-57022943 Msa0558330:intron 10.0%
!!! TCTTTTTATTTAAATATGTT+AGG - chr4_1:57023262-57023281 None:intergenic 10.0%
!! AACATATTTAAATAAAAAGA+TGG + chr4_1:57023262-57023281 Msa0558330:intron 10.0%
!! CAATCTTTAATATTAATTCA+AGG + chr4_1:57021098-57021117 Msa0558330:five_prime_UTR 15.0%
!!! TTTTTTTTTTTCAATTTACG+AGG + chr4_1:57021517-57021536 Msa0558330:five_prime_UTR 15.0%
!! ATATTAATATTTATTACCTC+GGG - chr4_1:57021788-57021807 None:intergenic 15.0%
!!! ATATTCCACTATTTTATTTA+TGG + chr4_1:57021815-57021834 Msa0558330:intron 15.0%
!!! TATTCCACTATTTTATTTAT+GGG + chr4_1:57021816-57021835 Msa0558330:intron 15.0%
!! GTAATAATAATGTAATGTAA+CGG - chr4_1:57022119-57022138 None:intergenic 15.0%
!! TACATTACATTATTATTACA+TGG + chr4_1:57022120-57022139 Msa0558330:intron 15.0%
!! TTATTGAATTGAATTGAATA+TGG + chr4_1:57022630-57022649 Msa0558330:intron 15.0%
!!! ATTTTTCATTCATTTTCAAA+TGG + chr4_1:57022954-57022973 Msa0558330:intron 15.0%
!!! TTTTTCATTCATTTTCAAAT+GGG + chr4_1:57022955-57022974 Msa0558330:intron 15.0%
!!! GTCATAGTTTTTTTTTTTAT+TGG + chr4_1:57023076-57023095 Msa0558330:intron 15.0%
!! CATTGTATTATATGATAATA+TGG + chr4_1:57023791-57023810 Msa0558330:intron 15.0%
!!! ATAATGTTTTTGATGATAAT+AGG + chr4_1:57025091-57025110 Msa0558330:intron 15.0%
!!! TACTATTATGTTTCTATATT+TGG + chr4_1:57025329-57025348 Msa0558330:intron 15.0%
!! AAATTTATAATCATCCAAAT+TGG - chr4_1:57025376-57025395 None:intergenic 15.0%
!! AATTAATATTAAAGATTGCG+CGG - chr4_1:57021096-57021115 None:intergenic 20.0%
!!! TTTTTTTGGTTTCAATCAAT+AGG - chr4_1:57021205-57021224 None:intergenic 20.0%
!! ACCAAAAAAAAAAAAAACAC+AGG + chr4_1:57021215-57021234 Msa0558330:five_prime_UTR 20.0%
!!! TCCTGTGTTTTTTTTTTTTT+TGG - chr4_1:57021219-57021238 None:intergenic 20.0%
!! CATGTACTATTAAAATTGTT+GGG - chr4_1:57021253-57021272 None:intergenic 20.0%
!! TCATGTACTATTAAAATTGT+TGG - chr4_1:57021254-57021273 None:intergenic 20.0%
!! ACAAAACAAAAACAAAACTA+TGG - chr4_1:57021308-57021327 None:intergenic 20.0%
!!! AAGGTTTGAAATTGAAAAAA+AGG - chr4_1:57021349-57021368 None:intergenic 20.0%
!!! TTTTTTTCCTTTTTTTGTCA+GGG - chr4_1:57021407-57021426 None:intergenic 20.0%
!!! ATTTTTTTCCTTTTTTTGTC+AGG - chr4_1:57021408-57021427 None:intergenic 20.0%
!! ATTTCCCATAAATAAAATAG+TGG - chr4_1:57021823-57021842 None:intergenic 20.0%
!! TTAAAGTAGTAACTTTATCT+TGG + chr4_1:57021878-57021897 Msa0558330:intron 20.0%
!! AAAAAAAACAATATTACACC+TGG + chr4_1:57022260-57022279 Msa0558330:intron 20.0%
!! TTTATCATGAAATAAAAACC+AGG - chr4_1:57022281-57022300 None:intergenic 20.0%
!! ATTTAACTCGTTATAATAGA+GGG - chr4_1:57022394-57022413 None:intergenic 20.0%
!! ATACAACAAATTGAATAAAG+TGG - chr4_1:57022771-57022790 None:intergenic 20.0%
!! CATTATATCATATATGCATA+TGG + chr4_1:57022791-57022810 Msa0558330:intron 20.0%
!!! TTGTTCTAAGTATTTGTTAA+CGG + chr4_1:57022842-57022861 Msa0558330:intron 20.0%
!!! GTTTATTTTGTTCCTAAATT+TGG + chr4_1:57023494-57023513 Msa0558330:intron 20.0%
!! AATAAAATCAACAGTTGAAA+AGG - chr4_1:57023528-57023547 None:intergenic 20.0%
!! AAACTGAAAAATCAACTAAA+GGG - chr4_1:57025061-57025080 None:intergenic 20.0%
!! AAAACTGAAAAATCAACTAA+AGG - chr4_1:57025062-57025081 None:intergenic 20.0%
!! TATCATCAAAAACATTATTG+AGG - chr4_1:57025089-57025108 None:intergenic 20.0%
!! TATTAAAGATGAAATGCAAA+TGG - chr4_1:57025132-57025151 None:intergenic 20.0%
!!! TATTTTTTTTCTTCCACATT+AGG + chr4_1:57025154-57025173 Msa0558330:intron 20.0%
!!! TTTTCCAAAATAAGTTTGTT+TGG - chr4_1:57025263-57025282 None:intergenic 20.0%
!! ATCATTATTAAACACCAATT+TGG + chr4_1:57025359-57025378 Msa0558330:intron 20.0%
!!! TTTTTCGTCAATGTAAATAT+AGG + chr4_1:57025428-57025447 Msa0558330:intron 20.0%
!!! TTTTCGTCAATGTAAATATA+GGG + chr4_1:57025429-57025448 Msa0558330:intron 20.0%
!! TATAACAAGTTTCAAATCAT+TGG - chr4_1:57026218-57026237 None:intergenic 20.0%
!!! TTATTTTTGTTTTTGCCAAA+AGG + chr4_1:57026314-57026333 Msa0558330:three_prime_UTR 20.0%
!! TTTTTGTGAAATGACGATTA+TGG - chr4_1:57021159-57021178 None:intergenic 25.0%
!!! ATAGGTAGTGGTTTTTATTT+GGG - chr4_1:57021187-57021206 None:intergenic 25.0%
!!! AATAGGTAGTGGTTTTTATT+TGG - chr4_1:57021188-57021207 None:intergenic 25.0%
! GAAATTGAAAAAAAGGAATG+AGG - chr4_1:57021342-57021361 None:intergenic 25.0%
! AGAAATTCATTTGATTGAGA+GGG - chr4_1:57021379-57021398 None:intergenic 25.0%
! AAGAAATTCATTTGATTGAG+AGG - chr4_1:57021380-57021399 None:intergenic 25.0%
!!! TTTTTTCCTTTTTTTGTCAG+GGG - chr4_1:57021406-57021425 None:intergenic 25.0%
!!! TTTTTTTCAATTTACGAGGT+CGG + chr4_1:57021521-57021540 Msa0558330:five_prime_UTR 25.0%
! AATGGTTAAGGAATCAAAAA+AGG - chr4_1:57021972-57021991 None:intergenic 25.0%
! AGTTTAATGAATTGTCAATC+AGG - chr4_1:57022147-57022166 None:intergenic 25.0%
! GATTTAACTCGTTATAATAG+AGG - chr4_1:57022395-57022414 None:intergenic 25.0%
! TTATTATTGCTCACATTCTT+CGG - chr4_1:57022567-57022586 None:intergenic 25.0%
!!! AACAAAAAGAGTGTTCTATT+TGG + chr4_1:57022680-57022699 Msa0558330:intron 25.0%
! ATAACTTAGCATAGTAATTG+AGG - chr4_1:57023030-57023049 None:intergenic 25.0%
! ATTACTATGCTAAGTTATGT+TGG + chr4_1:57023032-57023051 Msa0558330:intron 25.0%
! CTAAATCTCAATTGTTTCAT+AGG + chr4_1:57023173-57023192 Msa0558330:intron 25.0%
! TTAGAACTTAGAAATGTTTG+TGG - chr4_1:57023217-57023236 None:intergenic 25.0%
! ACAAACATTTCTAAGTTCTA+AGG + chr4_1:57023216-57023235 Msa0558330:intron 25.0%
! GAAATAAAGAATGATAAGAG+TGG - chr4_1:57023423-57023442 None:intergenic 25.0%
! ACAAAATAAACCTAACAAGA+AGG - chr4_1:57023485-57023504 None:intergenic 25.0%
!!! TAGTGAATTATCATTTTTGC+AGG + chr4_1:57023553-57023572 Msa0558330:intron 25.0%
!! TTGTTTAAATTTTCCCAACT+TGG + chr4_1:57023654-57023673 Msa0558330:intron 25.0%
! TACAATGAGATATACTATAC+AGG - chr4_1:57023778-57023797 None:intergenic 25.0%
! AGAAATCAGAAGATTCAATT+GGG + chr4_1:57023879-57023898 Msa0558330:CDS 25.0%
! ATTCAAAACTTTCTCATGTT+CGG - chr4_1:57024428-57024447 None:intergenic 25.0%
!!! GATTCTGTTTTGGAAATTAA+AGG + chr4_1:57024976-57024995 Msa0558330:CDS 25.0%
!! AAATTTTTCATTGCCTAATG+TGG - chr4_1:57025170-57025189 None:intergenic 25.0%
! ACATTAGGCAATGAAAAATT+TGG + chr4_1:57025169-57025188 Msa0558330:intron 25.0%
!!! TTTTCCAAAATTAGTCTGTT+TGG - chr4_1:57025219-57025238 None:intergenic 25.0%
!! TGAACCAAACAAACTTATTT+TGG + chr4_1:57025256-57025275 Msa0558330:intron 25.0%
!!! ACATGAAACTAGTTTTTGTT+TGG - chr4_1:57025299-57025318 None:intergenic 25.0%
!! TCTTTTGATCCTTTTATTCT+TGG + chr4_1:57025457-57025476 Msa0558330:intron 25.0%
! AGATTCAAACCAAGAATAAA+AGG - chr4_1:57025469-57025488 None:intergenic 25.0%
! TCGTAAACAATTTCAAAAGT+AGG - chr4_1:57025600-57025619 None:intergenic 25.0%
!!! CTTTTGAAATTGTTTACGAA+TGG + chr4_1:57025601-57025620 Msa0558330:intron 25.0%
! TATTGTCAAAGAAAAACTGA+CGG + chr4_1:57025879-57025898 Msa0558330:CDS 25.0%
! TTCATTTCCTTCATAAGATT+CGG - chr4_1:57026162-57026181 None:intergenic 25.0%
! AAATGAAGGAAAAGAAAAGA+CGG + chr4_1:57026175-57026194 Msa0558330:CDS 25.0%
!! ATTATGGTGTTGAATGCTTT+TGG - chr4_1:57021143-57021162 None:intergenic 30.0%
!! TAGGTAGTGGTTTTTATTTG+GGG - chr4_1:57021186-57021205 None:intergenic 30.0%
!!! AATGTGGTTTTGTCAATTCT+GGG - chr4_1:57021446-57021465 None:intergenic 30.0%
!!! AAATGTGGTTTTGTCAATTC+TGG - chr4_1:57021447-57021466 None:intergenic 30.0%
AGCATCTTATTAGGGTTAAT+CGG + chr4_1:57021482-57021501 Msa0558330:five_prime_UTR 30.0%
!!! TTTTTTGTTAACGTTAGCAC+CGG + chr4_1:57021548-57021567 Msa0558330:five_prime_UTR 30.0%
!!! AACACCACTTGTTTTTTTCA+AGG - chr4_1:57021591-57021610 None:intergenic 30.0%
! ATCAGAGTAAAAACCCATTT+TGG + chr4_1:57022196-57022215 Msa0558330:intron 30.0%
! TCTAACAGCTTGATTTTGTT+AGG + chr4_1:57022413-57022432 Msa0558330:intron 30.0%
! CTAACAGCTTGATTTTGTTA+GGG + chr4_1:57022414-57022433 Msa0558330:intron 30.0%
TAAATTGCAAGTCTCTATTC+TGG + chr4_1:57022438-57022457 Msa0558330:intron 30.0%
! CTCTATTCTGGCTATTAATT+CGG + chr4_1:57022450-57022469 Msa0558330:intron 30.0%
AAAATTGTGTTCTCTTGACA+AGG + chr4_1:57022505-57022524 Msa0558330:intron 30.0%
TTAAAGCAATGCATGATGTA+TGG + chr4_1:57022657-57022676 Msa0558330:intron 30.0%
! TTTTGCGTATACAATGGTTA+TGG + chr4_1:57022711-57022730 Msa0558330:intron 30.0%
TTTGCGTATACAATGGTTAT+GGG + chr4_1:57022712-57022731 Msa0558330:intron 30.0%
ATATATGCATATGGTTGTTG+AGG + chr4_1:57022800-57022819 Msa0558330:intron 30.0%
ATGTGCTTAAAATAGAGGTT+TGG - chr4_1:57022868-57022887 None:intergenic 30.0%
!! AAACCTCTATTTTAAGCACA+TGG + chr4_1:57022867-57022886 Msa0558330:intron 30.0%
!!! AGTTCTAAGGAACTTTTCAT+TGG + chr4_1:57023229-57023248 Msa0558330:intron 30.0%
CTGTTGCAATTCTTCATATT+TGG - chr4_1:57023588-57023607 None:intergenic 30.0%
GAGAAATCAGAAGATTCAAT+TGG + chr4_1:57023878-57023897 Msa0558330:CDS 30.0%
GACATAATCTCAGCTTAAAA+AGG - chr4_1:57023927-57023946 None:intergenic 30.0%
TGTGTGTAAACCTATAGATT+TGG - chr4_1:57024018-57024037 None:intergenic 30.0%
! TAACTGTACATCTTTGTTTC+AGG + chr4_1:57024134-57024153 Msa0558330:intron 30.0%
TTCTACTAAAGAGTTGTCAA+AGG + chr4_1:57024285-57024304 Msa0558330:CDS 30.0%
!!! ATGGAGGGTGTTTTAAAAAA+AGG + chr4_1:57024755-57024774 Msa0558330:CDS 30.0%
ACTCGCTTCATTAATATTTC+TGG - chr4_1:57024809-57024828 None:intergenic 30.0%
!! ATTTTTCAATTGATGTGTCC+CGG + chr4_1:57024842-57024861 Msa0558330:CDS 30.0%
! TGAACCAAACAGACTAATTT+TGG + chr4_1:57025212-57025231 Msa0558330:intron 30.0%
! CAACAAAACAATTGATTCAG+TGG + chr4_1:57025759-57025778 Msa0558330:CDS 30.0%
! CATTAATCTTCTGGTTACAA+GGG - chr4_1:57025981-57026000 None:intergenic 30.0%
! ACATTAATCTTCTGGTTACA+AGG - chr4_1:57025982-57026001 None:intergenic 30.0%
GAATCTTATGAAGGAAATGA+AGG + chr4_1:57026161-57026180 Msa0558330:CDS 30.0%
TCTAGATTACAGTAACTAAC+TGG + chr4_1:57026249-57026268 Msa0558330:three_prime_UTR 30.0%
! CCATTTGATATACTTCCTTT+TGG - chr4_1:57026332-57026351 None:intergenic 30.0%
! CCAAAAGGAAGTATATCAAA+TGG + chr4_1:57026329-57026348 Msa0558330:three_prime_UTR 30.0%
!! AGGTAGTGGTTTTTATTTGG+GGG - chr4_1:57021185-57021204 None:intergenic 35.0%
TGGTTTCAATCAATAGGTAG+TGG - chr4_1:57021199-57021218 None:intergenic 35.0%
AAAGGAATGAGGTAAGAAGA+AGG - chr4_1:57021331-57021350 None:intergenic 35.0%
CGTCGGAAAATTGAAAAATG+TGG - chr4_1:57021462-57021481 None:intergenic 35.0%
TTATTAGGGTTAATCGGAGA+AGG + chr4_1:57021488-57021507 Msa0558330:five_prime_UTR 35.0%
! TTTTTGTTAACGTTAGCACC+GGG + chr4_1:57021549-57021568 Msa0558330:five_prime_UTR 35.0%
TTTCTTATCAAGTGCCCTTA+GGG - chr4_1:57021857-57021876 None:intergenic 35.0%
AATAGAGGGACTAATGTGTT+CGG - chr4_1:57022380-57022399 None:intergenic 35.0%
! AACGTGTTTTGCGTATACAA+TGG + chr4_1:57022705-57022724 Msa0558330:intron 35.0%
AAGCCATGTGCTTAAAATAG+AGG - chr4_1:57022873-57022892 None:intergenic 35.0%
!! TCTATTTTAAGCACATGGCT+TGG + chr4_1:57022872-57022891 Msa0558330:intron 35.0%
AAAGATGGTGTATAACCATG+TGG + chr4_1:57023277-57023296 Msa0558330:intron 35.0%
TCATTGAGACATAAACCACA+TGG - chr4_1:57023346-57023365 None:intergenic 35.0%
! TGCTACTTACATTGATGAGA+TGG + chr4_1:57023389-57023408 Msa0558330:intron 35.0%
TAAACCTAACAAGAAGGCTT+TGG - chr4_1:57023479-57023498 None:intergenic 35.0%
AAGGCATGTGTTCCAAATTT+AGG - chr4_1:57023509-57023528 None:intergenic 35.0%
AAAAGATGTAGTGCCAAGTT+GGG - chr4_1:57023670-57023689 None:intergenic 35.0%
AAAAAGATGTAGTGCCAAGT+TGG - chr4_1:57023671-57023690 None:intergenic 35.0%
TATGATAATATGGCACTGCT+AGG + chr4_1:57023801-57023820 Msa0558330:intron 35.0%
ATGATAATATGGCACTGCTA+GGG + chr4_1:57023802-57023821 Msa0558330:intron 35.0%
GAAATGTCGACCAAATCTAT+AGG + chr4_1:57024005-57024024 Msa0558330:intron 35.0%
AGATTTCTATGATCCACTGT+TGG + chr4_1:57024088-57024107 Msa0558330:intron 35.0%
! ATCCACTGTTGGATTTTCAT+CGG + chr4_1:57024099-57024118 Msa0558330:intron 35.0%
!!! TGTTGGATTTTCATCGGTTT+GGG + chr4_1:57024105-57024124 Msa0558330:intron 35.0%
TGTGAAGGAACATCTAATTC+TGG - chr4_1:57024244-57024263 None:intergenic 35.0%
ACTCTCTCTAATTTCTGTGA+AGG - chr4_1:57024259-57024278 None:intergenic 35.0%
ACTAAAGAGTTGTCAAAGGA+TGG + chr4_1:57024289-57024308 Msa0558330:CDS 35.0%
CTAAAGAGTTGTCAAAGGAT+GGG + chr4_1:57024290-57024309 Msa0558330:CDS 35.0%
TTCATGAGACCAGTTTGTAT+CGG - chr4_1:57024344-57024363 None:intergenic 35.0%
! ATAAGTTGACAGATACAGCT+GGG + chr4_1:57024452-57024471 Msa0558330:CDS 35.0%
ACATGTTCCTTCACAGAAAT+TGG + chr4_1:57024522-57024541 Msa0558330:CDS 35.0%
TTCAACTAAAGAGACGTCAA+AGG + chr4_1:57024558-57024577 Msa0558330:CDS 35.0%
! TTCTTGAGACCAGTTTTTCT+GGG - chr4_1:57024617-57024636 None:intergenic 35.0%
! ATTCTTGAGACCAGTTTTTC+TGG - chr4_1:57024618-57024637 None:intergenic 35.0%
TTGACAGAGACTGTATATGA+AGG + chr4_1:57024730-57024749 Msa0558330:CDS 35.0%
!!! GGGTGTTTTAAAAAAAGGAG+AGG + chr4_1:57024760-57024779 Msa0558330:CDS 35.0%
! GGCGATTTTAGATTCTGTTT+TGG + chr4_1:57024966-57024985 Msa0558330:CDS 35.0%
TGCAAATGGCAATAAACTAG+TGG - chr4_1:57025118-57025137 None:intergenic 35.0%
ACATGGACTTTGACACTATA+AGG + chr4_1:57025725-57025744 Msa0558330:CDS 35.0%
TAGTGCAGACTTATATTGAC+GGG - chr4_1:57025848-57025867 None:intergenic 35.0%
GTAGTGCAGACTTATATTGA+CGG - chr4_1:57025849-57025868 None:intergenic 35.0%
CCTTTGCAACATTAATCTTC+TGG - chr4_1:57025990-57026009 None:intergenic 35.0%
CCAGAAGATTAATGTTGCAA+AGG + chr4_1:57025987-57026006 Msa0558330:CDS 35.0%
TAAAGAGAATTCTCCGTCTT+CGG + chr4_1:57026077-57026096 Msa0558330:CDS 35.0%
TTACACATCAAGAAAGCTGT+CGG + chr4_1:57026108-57026127 Msa0558330:CDS 35.0%
AAAAGAAAAGACGGAGAACT+AGG + chr4_1:57026184-57026203 Msa0558330:CDS 35.0%
AGATTACAGTAACTAACTGG+TGG + chr4_1:57026252-57026271 Msa0558330:three_prime_UTR 35.0%
AAATGGAGAAGTGACAACAT+AGG + chr4_1:57026346-57026365 Msa0558330:three_prime_UTR 35.0%
GAAGTGACAACATAGGATAT+TGG + chr4_1:57026353-57026372 Msa0558330:three_prime_UTR 35.0%
TTCATTTGATTGAGAGGGAC+AGG - chr4_1:57021374-57021393 None:intergenic 40.0%
CTTCAACCCCTGACAAAAAA+AGG + chr4_1:57021397-57021416 Msa0558330:five_prime_UTR 40.0%
!!! TGGTTTTGTCAATTCTGGGT+GGG - chr4_1:57021442-57021461 None:intergenic 40.0%
TTTCCGACGAGCATCTTATT+AGG + chr4_1:57021473-57021492 Msa0558330:five_prime_UTR 40.0%
TTCCGACGAGCATCTTATTA+GGG + chr4_1:57021474-57021493 Msa0558330:five_prime_UTR 40.0%
AACCCTAATAAGATGCTCGT+CGG - chr4_1:57021479-57021498 None:intergenic 40.0%
GGAGCCTTGAAAAAAACAAG+TGG + chr4_1:57021584-57021603 Msa0558330:five_prime_UTR 40.0%
TATTACCTCGGGTGTAATAG+CGG - chr4_1:57021777-57021796 None:intergenic 40.0%
AAATGCTAACAAGTGCCCTA+AGG + chr4_1:57021839-57021858 Msa0558330:intron 40.0%
AATGCTAACAAGTGCCCTAA+GGG + chr4_1:57021840-57021859 Msa0558330:intron 40.0%
GTTTCTTATCAAGTGCCCTT+AGG - chr4_1:57021858-57021877 None:intergenic 40.0%
ATTCCTTAACCATTGCCCTA+AGG + chr4_1:57021978-57021997 Msa0558330:intron 40.0%
TTCCTTAACCATTGCCCTAA+GGG + chr4_1:57021979-57021998 Msa0558330:intron 40.0%
TTTGCTAACCAATGCCCTTA+GGG - chr4_1:57021996-57022015 None:intergenic 40.0%
! TTTTGCTAACCAATGCCCTT+AGG - chr4_1:57021997-57022016 None:intergenic 40.0%
CAAGAGCAAAGGACCAAAAT+GGG - chr4_1:57022212-57022231 None:intergenic 40.0%
AAGTGGCGAACCAAAACAAT+TGG - chr4_1:57022754-57022773 None:intergenic 40.0%
TATGCATATGGTTGTTGAGG+TGG + chr4_1:57022803-57022822 Msa0558330:intron 40.0%
! AGAACACGAGCATGTGTTTT+AGG - chr4_1:57022902-57022921 None:intergenic 40.0%
! ACCATGTGGTTTGTGATTGT+TGG + chr4_1:57023291-57023310 Msa0558330:intron 40.0%
ACCAACAATCACAAACCACA+TGG - chr4_1:57023295-57023314 None:intergenic 40.0%
TCAGAGTCTCTATAACCATG+TGG + chr4_1:57023328-57023347 Msa0558330:intron 40.0%
TATGCCAAAGCCTTCTTGTT+AGG + chr4_1:57023472-57023491 Msa0558330:intron 40.0%
AACCGATGAAAATCCAACAG+TGG - chr4_1:57024104-57024123 None:intergenic 40.0%
!! CTGTTGGATTTTCATCGGTT+TGG + chr4_1:57024104-57024123 Msa0558330:intron 40.0%
ATCAAAGCTTGAATCCCTCA+AGG + chr4_1:57024165-57024184 Msa0558330:CDS 40.0%
CTTGTTGACAACAACTCAGT+TGG + chr4_1:57024217-57024236 Msa0558330:CDS 40.0%
CACATCAATCCGATACAAAC+TGG + chr4_1:57024332-57024351 Msa0558330:CDS 40.0%
ATGTCTTCAGAAGACATTGC+TGG - chr4_1:57024376-57024395 None:intergenic 40.0%
! AGCAATGTCTTCTGAAGACA+TGG + chr4_1:57024375-57024394 Msa0558330:CDS 40.0%
! GATAAGTTGACAGATACAGC+TGG + chr4_1:57024451-57024470 Msa0558330:CDS 40.0%
TGTGAAGGAACATGTGATTC+TGG - chr4_1:57024517-57024536 None:intergenic 40.0%
ACTCTCTCCAATTTCTGTGA+AGG - chr4_1:57024532-57024551 None:intergenic 40.0%
ACTAAAGAGACGTCAAAGGA+TGG + chr4_1:57024562-57024581 Msa0558330:CDS 40.0%
CTAAAGAGACGTCAAAGGAT+GGG + chr4_1:57024563-57024582 Msa0558330:CDS 40.0%
CACATCAAACCCAGAAAAAC+TGG + chr4_1:57024605-57024624 Msa0558330:CDS 40.0%
ATGTCTTCAGAAGACATTGC+TGG - chr4_1:57024376-57024395 None:intergenic 40.0%
! AGCAATGTCTTCTGAAGACA+TGG + chr4_1:57024375-57024394 Msa0558330:CDS 40.0%
GAGACTGTATATGAAGGACA+TGG + chr4_1:57024736-57024755 Msa0558330:CDS 40.0%
ACTGTATATGAAGGACATGG+AGG + chr4_1:57024739-57024758 Msa0558330:CDS 40.0%
CTGTATATGAAGGACATGGA+GGG + chr4_1:57024740-57024759 Msa0558330:CDS 40.0%
AAAGGAGAGGAAAGAGAAAG+AGG + chr4_1:57024773-57024792 Msa0558330:CDS 40.0%
TGGTAGAACTTTCTTTCAGC+CGG - chr4_1:57024864-57024883 None:intergenic 40.0%
CAAATCTTCTGGTGTAACTG+AGG + chr4_1:57024903-57024922 Msa0558330:CDS 40.0%
GGAGAACACGAACTTGAAAA+AGG + chr4_1:57024924-57024943 Msa0558330:CDS 40.0%
GGATGAAACGAAAGATCTGA+TGG + chr4_1:57024945-57024964 Msa0558330:CDS 40.0%
! CAGGATCTTTTACACATACC+TGG - chr4_1:57025032-57025051 None:intergenic 40.0%
ATCAACTAAAGGGAGTGAAC+AGG - chr4_1:57025051-57025070 None:intergenic 40.0%
! GTAGAGATTTGCTCAAGGAA+TGG + chr4_1:57025627-57025646 Msa0558330:intron 40.0%
! TTTGATAGCAGAAGCGACAA+AGG + chr4_1:57025680-57025699 Msa0558330:intron 40.0%
! CTTATATTGACGGGTGTTCT+TGG - chr4_1:57025839-57025858 None:intergenic 40.0%
AAGAAAAACTGACGGAGAAC+AGG + chr4_1:57025887-57025906 Msa0558330:CDS 40.0%
ACACTTGGGACTTTCAAAGA+AGG - chr4_1:57025955-57025974 None:intergenic 40.0%
! TAATCTTCTGGTTACAAGGG+CGG - chr4_1:57025978-57025997 None:intergenic 40.0%
TCTTTACTACCACCACTACT+AGG - chr4_1:57026063-57026082 None:intergenic 40.0%
TGTAAGGATTTCACCGAAGA+CGG - chr4_1:57026093-57026112 None:intergenic 40.0%
GACAGCTTTCTTGATGTGTA+AGG - chr4_1:57026109-57026128 None:intergenic 40.0%
TTCATAAGATTCGGAGTTGC+AGG - chr4_1:57026153-57026172 None:intergenic 40.0%
TGCAACTCCGAATCTTATGA+AGG + chr4_1:57026152-57026171 Msa0558330:CDS 40.0%
!! ACTGGTGGTTTTACATCTGT+CGG + chr4_1:57026267-57026286 Msa0558330:three_prime_UTR 40.0%
TGATTGAGAGGGACAGGAAA+AGG - chr4_1:57021368-57021387 None:intergenic 45.0%
!!! GTGGTTTTGTCAATTCTGGG+TGG - chr4_1:57021443-57021462 None:intergenic 45.0%
TTAGGGTTAATCGGAGAAGG+TGG + chr4_1:57021491-57021510 Msa0558330:five_prime_UTR 45.0%
TTCTTGGTGGAGCTGTTATC+CGG + chr4_1:57021690-57021709 Msa0558330:CDS 45.0%
CCAAGAGCAAAGGACCAAAA+TGG - chr4_1:57022213-57022232 None:intergenic 45.0%
!! CCATTTTGGTCCTTTGCTCT+TGG + chr4_1:57022210-57022229 Msa0558330:intron 45.0%
CTAAATTGGGCCAAGAGCAA+AGG - chr4_1:57022223-57022242 None:intergenic 45.0%
CTTTAGACCCACATTCTGAC+TGG + chr4_1:57022539-57022558 Msa0558330:intron 45.0%
TTCGGTTCCAGTCAGAATGT+GGG - chr4_1:57022549-57022568 None:intergenic 45.0%
!! TCACGTGGTGCCAATTGTTT+TGG + chr4_1:57022741-57022760 Msa0558330:intron 45.0%
GAATTGCAACAGCGCTATTC+AGG + chr4_1:57023596-57023615 Msa0558330:CDS 45.0%
AGTGTCATGCTGTCTTTCGA+GGG - chr4_1:57023716-57023735 None:intergenic 45.0%
AAGTGTCATGCTGTCTTTCG+AGG - chr4_1:57023717-57023736 None:intergenic 45.0%
CTCATTCTTGTCAGCCTTGA+GGG - chr4_1:57024182-57024201 None:intergenic 45.0%
TCTCATTCTTGTCAGCCTTG+AGG - chr4_1:57024183-57024202 None:intergenic 45.0%
! AAACTGGTCTCATGAATGCC+AGG + chr4_1:57024348-57024367 Msa0558330:CDS 45.0%
TCAATAGACCCTGAAACACC+AGG - chr4_1:57024409-57024428 None:intergenic 45.0%
CAGAAGACATTGCTGGAACT+TGG - chr4_1:57024642-57024661 None:intergenic 45.0%
AGATTACGCCTGGTGTTTCA+GGG + chr4_1:57024671-57024690 Msa0558330:CDS 45.0%
GAGAGGAAAGAGAAAGAGGA+AGG + chr4_1:57024777-57024796 Msa0558330:CDS 45.0%
GGTAGAACTTTCTTTCAGCC+GGG - chr4_1:57024863-57024882 None:intergenic 45.0%
GAAAGTTCTACCAGCAACTG+TGG + chr4_1:57024871-57024890 Msa0558330:CDS 45.0%
GGTGAGGTTGTCAAATCTTC+TGG + chr4_1:57024892-57024911 Msa0558330:CDS 45.0%
GCAGTTAATCCAGAGACACA+TGG + chr4_1:57025708-57025727 Msa0558330:CDS 45.0%
TGTCAAAGTCCATGTGTCTC+TGG - chr4_1:57025720-57025739 None:intergenic 45.0%
!! GTAGAACAGCAAAGCATTGG+TGG - chr4_1:57025815-57025834 None:intergenic 45.0%
GGAGTAGAACAGCAAAGCAT+TGG - chr4_1:57025818-57025837 None:intergenic 45.0%
AAAAACTGACGGAGAACAGG+AGG + chr4_1:57025890-57025909 Msa0558330:CDS 45.0%
AATGTTGCAAAGGTAGCCGA+TGG + chr4_1:57025997-57026016 Msa0558330:CDS 45.0%
AAAGCCAAGAAGCCTAGTAG+TGG + chr4_1:57026048-57026067 Msa0558330:CDS 45.0%
AGCGTACACGTGTACGAAGA+TGG + chr4_1:57021625-57021644 Msa0558330:exon 50.0%
GCGTACACGTGTACGAAGAT+GGG + chr4_1:57021626-57021645 Msa0558330:exon 50.0%
AGCGGAAGTGATTGTGACGT+GGG + chr4_1:57021649-57021668 Msa0558330:CDS 50.0%
ACATGGGAGGAGCTTCTTCT+TGG + chr4_1:57021674-57021693 Msa0558330:CDS 50.0%
AAGGAGAAGGAGTTCTCCCT+CGG - chr4_1:57021754-57021773 None:intergenic 50.0%
! GGTGTAATAGCGGAAGGAGA+AGG - chr4_1:57021767-57021786 None:intergenic 50.0%
TGCCCTTAGGGCAATGGTTA+AGG - chr4_1:57021984-57022003 None:intergenic 50.0%
! AACCATTGCCCTAAGGGCAT+TGG + chr4_1:57021985-57022004 Msa0558330:intron 50.0%
AACCAATGCCCTTAGGGCAA+TGG - chr4_1:57021990-57022009 None:intergenic 50.0%
CTTCGGTTCCAGTCAGAATG+TGG - chr4_1:57022550-57022569 None:intergenic 50.0%
GGTTATGGGTAGCATTCACG+TGG + chr4_1:57022726-57022745 Msa0558330:intron 50.0%
AATATGGCACTGCTAGGGCT+TGG + chr4_1:57023807-57023826 Msa0558330:intron 50.0%
AGCAGAGCTTAAGCGAGCTT+TGG + chr4_1:57023856-57023875 Msa0558330:CDS 50.0%
!! TCAAAGGATGGGCTATCTGC+TGG + chr4_1:57024301-57024320 Msa0558330:CDS 50.0%
!! CAAAGGATGGGCTATCTGCT+GGG + chr4_1:57024302-57024321 Msa0558330:CDS 50.0%
CAGAAGACATTGCTGGAACC+TGG - chr4_1:57024369-57024388 None:intergenic 50.0%
AGATCTCGCCTGGTGTTTCA+GGG + chr4_1:57024398-57024417 Msa0558330:CDS 50.0%
GAAGACATGGAGATTACGCC+TGG + chr4_1:57024661-57024680 Msa0558330:CDS 50.0%
GAGATTACGCCTGGTGTTTC+AGG + chr4_1:57024670-57024689 Msa0558330:CDS 50.0%
TTCTACCAGCAACTGTGGTG+AGG + chr4_1:57024876-57024895 Msa0558330:CDS 50.0%
! GGCGAGTAGAGATTTGCTCA+AGG + chr4_1:57025622-57025641 Msa0558330:intron 50.0%
ACCACCACTACTAGGCTTCT+TGG - chr4_1:57026055-57026074 None:intergenic 50.0%
CACATCAAGAAAGCTGTCGG+TGG + chr4_1:57026111-57026130 Msa0558330:CDS 50.0%
CACGTGTACGAAGATGGGAG+CGG + chr4_1:57021631-57021650 Msa0558330:exon 55.0%
GAGCGGAAGTGATTGTGACG+TGG + chr4_1:57021648-57021667 Msa0558330:CDS 55.0%
GCGGAAGTGATTGTGACGTG+GGG + chr4_1:57021650-57021669 Msa0558330:CDS 55.0%
CGGAAGTGATTGTGACGTGG+GGG + chr4_1:57021651-57021670 Msa0558330:CDS 55.0%
TGATTGTGACGTGGGGGACA+TGG + chr4_1:57021657-57021676 Msa0558330:CDS 55.0%
GATTGTGACGTGGGGGACAT+GGG + chr4_1:57021658-57021677 Msa0558330:CDS 55.0%
TGGGAGGAGCTTCTTCTTGG+TGG + chr4_1:57021677-57021696 Msa0558330:CDS 55.0%
TCCTTCCGCTATTACACCCG+AGG + chr4_1:57021769-57021788 Msa0558330:CDS 55.0%
! ACCTCGGGTGTAATAGCGGA+AGG - chr4_1:57021773-57021792 None:intergenic 55.0%
! CACTGCTAGGGCTTGGTATG+AGG + chr4_1:57023814-57023833 Msa0558330:intron 55.0%
GAAGACATGGAGATCTCGCC+TGG + chr4_1:57024388-57024407 Msa0558330:CDS 55.0%
GAGATCTCGCCTGGTGTTTC+AGG + chr4_1:57024397-57024416 Msa0558330:CDS 55.0%
TCGGTTGACCCTGAAACACC+AGG - chr4_1:57024682-57024701 None:intergenic 55.0%
GACAACCTCACCACAGTTGC+TGG - chr4_1:57024884-57024903 None:intergenic 55.0%
CTGTCGCAAGCATGATAGCC+AGG + chr4_1:57025011-57025030 Msa0558330:CDS 55.0%
GGTTACAAGGGCGGACACTT+GGG - chr4_1:57025969-57025988 None:intergenic 55.0%
TGGTTACAAGGGCGGACACT+TGG - chr4_1:57025970-57025989 None:intergenic 55.0%
! TTATTTGAGACCCCCGAGGC+AGG - chr4_1:57026030-57026049 None:intergenic 55.0%
!! GGCTTTATTTGAGACCCCCG+AGG - chr4_1:57026034-57026053 None:intergenic 55.0%
GCCAAGAAGCCTAGTAGTGG+TGG + chr4_1:57026051-57026070 Msa0558330:CDS 55.0%
! AACGTTAGCACCGGGTGCGT+AGG + chr4_1:57021557-57021576 Msa0558330:five_prime_UTR 60.0%
! AGCACCGGGTGCGTAGGATT+AGG + chr4_1:57021563-57021582 Msa0558330:five_prime_UTR 60.0%
GGCTCCTAATCCTACGCACC+CGG - chr4_1:57021570-57021589 None:intergenic 60.0%
GGTGGAGCTGTTATCCGGCA+CGG + chr4_1:57021695-57021714 Msa0558330:CDS 60.0%
ACCAATCACCAGTGCCGTGC+CGG - chr4_1:57021712-57021731 None:intergenic 60.0%
! TGGTGATTGGTCCGTCGTCG+CGG + chr4_1:57021721-57021740 Msa0558330:CDS 60.0%
TGTGACGTGGGGGACATGGG+AGG + chr4_1:57021661-57021680 Msa0558330:CDS 65.0%
GCTGTTATCCGGCACGGCAC+TGG + chr4_1:57021701-57021720 Msa0558330:CDS 65.0%
!! TCCGGCACGGCACTGGTGAT+TGG + chr4_1:57021708-57021727 Msa0558330:CDS 65.0%
! TGATTGGTCCGTCGTCGCGG+CGG + chr4_1:57021724-57021743 Msa0558330:CDS 65.0%
CGAGGCAGGATCGCTGCCAT+CGG - chr4_1:57026016-57026035 None:intergenic 65.0%
CGATGGCAGCGATCCTGCCT+CGG + chr4_1:57026014-57026033 Msa0558330:CDS 65.0%
GATGGCAGCGATCCTGCCTC+GGG + chr4_1:57026015-57026034 Msa0558330:CDS 65.0%
ATGGCAGCGATCCTGCCTCG+GGG + chr4_1:57026016-57026035 Msa0558330:CDS 65.0%
TGGCAGCGATCCTGCCTCGG+GGG + chr4_1:57026017-57026036 Msa0558330:CDS 70.0%
TCGGAGCTCCGCCGCGACGA+CGG - chr4_1:57021735-57021754 None:intergenic 75.0%
TCGTCGCGGCGGAGCTCCGA+GGG + chr4_1:57021735-57021754 Msa0558330:CDS 75.0%
! GTCGTCGCGGCGGAGCTCCG+AGG + chr4_1:57021734-57021753 Msa0558330:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 57021087 57026376 57021087 ID=Msa0558330;Name=Msa0558330
chr4_1 mRNA 57021087 57026376 57021087 ID=Msa0558330-mRNA-1;Parent=Msa0558330;Name=Msa0558330-mRNA-1;_AED=0.08;_eAED=0.08;_QI=557|1|1|1|1|1|5|164|557
chr4_1 exon 57021087 57021790 57021087 ID=Msa0558330-mRNA-1:exon:17230;Parent=Msa0558330-mRNA-1
chr4_1 exon 57023575 57023624 57023575 ID=Msa0558330-mRNA-1:exon:17231;Parent=Msa0558330-mRNA-1
chr4_1 exon 57023823 57023900 57023823 ID=Msa0558330-mRNA-1:exon:17232;Parent=Msa0558330-mRNA-1
chr4_1 exon 57024156 57025032 57024156 ID=Msa0558330-mRNA-1:exon:17233;Parent=Msa0558330-mRNA-1
chr4_1 exon 57025691 57026376 57025691 ID=Msa0558330-mRNA-1:exon:17234;Parent=Msa0558330-mRNA-1
chr4_1 five_prime_UTR 57021087 57021643 57021087 ID=Msa0558330-mRNA-1:five_prime_utr;Parent=Msa0558330-mRNA-1
chr4_1 CDS 57021644 57021790 57021644 ID=Msa0558330-mRNA-1:cds;Parent=Msa0558330-mRNA-1
chr4_1 CDS 57023575 57023624 57023575 ID=Msa0558330-mRNA-1:cds;Parent=Msa0558330-mRNA-1
chr4_1 CDS 57023823 57023900 57023823 ID=Msa0558330-mRNA-1:cds;Parent=Msa0558330-mRNA-1
chr4_1 CDS 57024156 57025032 57024156 ID=Msa0558330-mRNA-1:cds;Parent=Msa0558330-mRNA-1
chr4_1 CDS 57025691 57026212 57025691 ID=Msa0558330-mRNA-1:cds;Parent=Msa0558330-mRNA-1
chr4_1 three_prime_UTR 57026213 57026376 57026213 ID=Msa0558330-mRNA-1:three_prime_utr;Parent=Msa0558330-mRNA-1
Gene Sequence

>Msa0558330

ATGGGAGCGGAAGTGATTGTGACGTGGGGGACATGGGAGGAGCTTCTTCTTGGTGGAGCTGTTATCCGGCACGGCACTGGTGATTGGTCCGTCGTCGCGGCGGAGCTCCGAGGGAGAACTCCTTCTCCTTCCGCTATTACACCCGAGGTCTGTAAAGCCAAATATGAAGAATTGCAACAGCGCTATTCAGGCTGCACGGCTTGGTATGAGGAGCTTAAGAAGAGAAGAGTAGCAGAGCTTAAGCGAGCTTTGGAGAAATCAGAAGATTCAATTGGGTCTCTTGAATCAAAGCTTGAATCCCTCAAGGCTGACAAGAATGAGAAAATAGATGATTGTCTTGTTGACAACAACTCAGTTGGACCAGAATTAGATGTTCCTTCACAGAAATTAGAGAGAGTTGAATCTTCTACTAAAGAGTTGTCAAAGGATGGGCTATCTGCTGGGAGTTTTACACATCAATCCGATACAAACTGGTCTCATGAATGCCAGGTTCCAGCAATGTCTTCTGAAGACATGGAGATCTCGCCTGGTGTTTCAGGGTCTATTGAACATGAGAAAGTTTTGAATATAGATAAGTTGACAGATACAGCTGGGAAAAGAGATGATTGTCATGTTGACAACGACTCAGTTGAACCAGAATCACATGTTCCTTCACAGAAATTGGAGAGAGTTGAATCTTCAACTAAAGAGACGTCAAAGGATGGGTTATCTGCTGGTAGTTTTACACATCAAACCCAGAAAAACTGGTCTCAAGAATGCCAAGTTCCAGCAATGTCTTCTGAAGACATGGAGATTACGCCTGGTGTTTCAGGGTCAACCGAACATGAGAAAGTTTTGAATGTAGATAAGTTGACAGAGACTGTATATGAAGGACATGGAGGGTGTTTTAAAAAAAGGAGAGGAAAGAGAAAGAGGAAGGATTGTGCCAGAAATATTAATGAAGCGAGTGTGAGAGAAAGTGATTTTTCAATTGATGTGTCCCGGCTGAAAGAAAGTTCTACCAGCAACTGTGGTGAGGTTGTCAAATCTTCTGGTGTAACTGAGGAGAACACGAACTTGAAAAAGGATGAAACGAAAGATCTGATGGCGATTTTAGATTCTGTTTTGGAAATTAAAGGTGCTTCTTGCTTCTGTCGCAAGCATGATAGCCAGAAGCGACAAAGGTACAAGCAGTTAATCCAGAGACACATGGACTTTGACACTATAAGGTCAAGAATTAGCAACAAAACAATTGATTCAGTGGTGCAACTTTTCAGAGACATGTTTCTATTGACCACCAATGCTTTGCTGTTCTACTCCAAGAACACCCGTCAATATAAGTCTGCACTACTCATGAGAGATATTGTCAAAGAAAAACTGACGGAGAACAGGAGGAATGTCATACATTCTAATGTCGACATTGTCTGCGCTACTCCTTCTTTGAAAGTCCCAAGTGTCCGCCCTTGTAACCAGAAGATTAATGTTGCAAAGGTAGCCGATGGCAGCGATCCTGCCTCGGGGGTCTCAAATAAAGCCAAGAAGCCTAGTAGTGGTGGTAGTAAAGAGAATTCTCCGTCTTCGGTGAAATCCTTACACATCAAGAAAGCTGTCGGTGGATCTAAAAAGCATGAACCTGCAACTCCGAATCTTATGAAGGAAATGAAGGAAAAGAAAAGACGGAGAACTAGGTTATGA
Protein sequence

>Msa0558330

MGAEVIVTWGTWEELLLGGAVIRHGTGDWSVVAAELRGRTPSPSAITPEVCKAKYEELQQRYSGCTAWYEELKKRRVAELKRALEKSEDSIGSLESKLESLKADKNEKIDDCLVDNNSVGPELDVPSQKLERVESSTKELSKDGLSAGSFTHQSDTNWSHECQVPAMSSEDMEISPGVSGSIEHEKVLNIDKLTDTAGKRDDCHVDNDSVEPESHVPSQKLERVESSTKETSKDGLSAGSFTHQTQKNWSQECQVPAMSSEDMEITPGVSGSTEHEKVLNVDKLTETVYEGHGGCFKKRRGKRKRKDCARNINEASVRESDFSIDVSRLKESSTSNCGEVVKSSGVTEENTNLKKDETKDLMAILDSVLEIKGASCFCRKHDSQKRQRYKQLIQRHMDFDTIRSRISNKTIDSVVQLFRDMFLLTTNALLFYSKNTRQYKSALLMRDIVKEKLTENRRNVIHSNVDIVCATPSLKVPSVRPCNQKINVAKVADGSDPASGVSNKAKKPSSGGSKENSPSSVKSLHIKKAVGGSKKHEPATPNLMKEMKEKKRRRTRL*