AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0613090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0613090 MtrunA17_Chr4g0047931 95.332 557 26 0 1 557 1 557 0.0 1070
Msa0613090 MtrunA17_Chr2g0281431 51.875 480 204 11 95 556 367 837 2.75e-122 379
Msa0613090 MtrunA17_Chr2g0281431 61.455 275 96 5 9 278 4 273 2.20e-93 303
Msa0613090 MtrunA17_Chr2g0281431 56.383 188 73 4 95 278 183 365 4.45e-45 170
Msa0613090 MtrunA17_Chr2g0281431 54.787 188 76 4 95 278 275 457 1.45e-44 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0613090 AT1G61215.1 60.494 162 56 5 9 166 14 171 1.95e-49 178
Msa0613090 AT1G61215.1 37.092 337 169 13 201 514 111 427 1.79e-34 136
Msa0613090 AT1G61215.2 37.092 337 169 13 201 514 92 408 2.58e-34 135
Msa0613090 AT1G61215.2 55.738 122 47 4 49 166 34 152 6.85e-27 114
Msa0613090 AT2G42150.1 31.148 244 133 6 8 239 15 235 1.01e-17 87.0
Msa0613090 AT2G42150.1 28.358 134 89 3 357 485 272 403 2.16e-12 70.1
Msa0613090 AT3G60110.1 30.625 160 84 2 4 143 47 199 1.93e-15 80.1
Msa0613090 AT2G44430.1 39.655 116 47 3 9 101 50 165 2.92e-14 76.3
Msa0613090 AT3G57980.1 37.815 119 55 2 8 108 15 132 8.66e-14 74.7
Msa0613090 AT3G57980.2 37.815 119 55 2 8 108 15 132 9.07e-14 74.7

Find 150 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATCTCGCCTGGTGTTTC+AGG 0.123019 4_2:+61694182 Msa0613090:CDS
GAGATTACGCCTGGTGTTTC+AGG 0.146830 4_2:+61694455 Msa0613090:CDS
ACATGTTCCTTCACAGAAAT+TGG 0.179613 4_2:+61694307 Msa0613090:CDS
TTTCCGACGAGCATCTTATT+AGG 0.208989 4_2:+61691353 Msa0613090:five_prime_UTR
ACTCGCTTCATTAATATTTC+TGG 0.224605 4_2:-61694591 None:intergenic
CTGTTGCAATTCTTCATATT+TGG 0.258493 4_2:-61693370 None:intergenic
ACATGGGAGGAGCTTCTTCT+TGG 0.262308 4_2:+61691556 Msa0613090:CDS
CTCATTCTTGTCAGCCTTGA+GGG 0.265381 4_2:-61693964 None:intergenic
CCTTTGCAACATTAATCTTC+TGG 0.292069 4_2:-61695772 None:intergenic
CTTATATTGACGGGTGTTCT+TGG 0.307524 4_2:-61695621 None:intergenic
TATAACAAGTTTCAAATCAT+TGG 0.310397 4_2:-61696000 None:intergenic
TTCATAAGATTCGGAGTTGC+AGG 0.312088 4_2:-61695935 None:intergenic
TGTGAAGGAACATGTGATTC+TGG 0.321301 4_2:-61694299 None:intergenic
GAATTGCAACAGCGCTATTC+AGG 0.321488 4_2:+61693381 Msa0613090:CDS
TGTGAAGGAACATCTAATTC+TGG 0.326164 4_2:-61694026 None:intergenic
CCATTTGATATACTTCCTTT+TGG 0.337379 4_2:-61696114 None:intergenic
TTCCGACGAGCATCTTATTA+GGG 0.353146 4_2:+61691354 Msa0613090:five_prime_UTR
ATTATGGTGTTGAATGCTTT+TGG 0.353330 4_2:-61691010 None:intergenic
ACATGGACTTTGACACTATA+AGG 0.354571 4_2:+61695510 Msa0613090:CDS
ACCACCACTACTAGGCTTCT+TGG 0.355990 4_2:-61695837 None:intergenic
TTCATTTCCTTCATAAGATT+CGG 0.356180 4_2:-61695944 None:intergenic
GGAGAACACGAACTTGAAAA+AGG 0.362922 4_2:+61694709 Msa0613090:CDS
GAGAAATCAGAAGATTCAAT+TGG 0.363491 4_2:+61693663 Msa0613090:CDS
AGCAGAGCTTAAGCGAGCTT+TGG 0.364114 4_2:+61693641 Msa0613090:CDS
TCATGTACTATTAAAATTGT+TGG 0.369977 4_2:-61691121 None:intergenic
CAGAAGACATTGCTGGAACT+TGG 0.372442 4_2:-61694424 None:intergenic
AGCATCTTATTAGGGTTAAT+CGG 0.380327 4_2:+61691362 Msa0613090:five_prime_UTR
TTCATTTGATTGAGTGGGAC+AGG 0.395231 4_2:-61691247 None:intergenic
AAGAAATTCATTTGATTGAG+TGG 0.398471 4_2:-61691253 None:intergenic
TGGGAGGAGCTTCTTCTTGG+TGG 0.399007 4_2:+61691559 Msa0613090:CDS
GATAACCTCACCACAGTTGC+TGG 0.400656 4_2:-61694666 None:intergenic
ATTCAAAACTTTCTCATGTT+CGG 0.403224 4_2:-61694483 None:intergenic
TTCTTGGTGGAGCTGTTATC+CGG 0.405630 4_2:+61691572 Msa0613090:CDS
CATGTACTATTAAAATTGTT+GGG 0.407592 4_2:-61691120 None:intergenic
TGATTGAGTGGGACAGGAAA+AGG 0.411400 4_2:-61691241 None:intergenic
TCCGGCACGGCACTGGTGAT+TGG 0.416103 4_2:+61691590 Msa0613090:CDS
CACTGCTAGGGCTTGGTATG+AGG 0.418968 4_2:+61693599 Msa0613090:intron
TCAAAGGATGGGCTATCTGC+TGG 0.419315 4_2:+61694086 Msa0613090:CDS
GGTGAGGTTATCAAATCTTC+TGG 0.423467 4_2:+61694677 Msa0613090:CDS
CACATCAAACCGATACAAAC+TGG 0.424104 4_2:+61694117 Msa0613090:CDS
AAAGGAGAGGAAAGAGAAAG+AGG 0.432152 4_2:+61694558 Msa0613090:CDS
TCTAGATTACAGTAACTAAC+TGG 0.434567 4_2:+61696034 Msa0613090:three_prime_UTR
TCTTTGCTACCACCACTACT+AGG 0.435945 4_2:-61695845 None:intergenic
CAAAGAGAATTCTCCGTCTT+CGG 0.440924 4_2:+61695862 Msa0613090:CDS
ATGTCTTCAGAAGACATTGC+TGG 0.442846 4_2:-61694158 None:intergenic
ATGTCTTCAGAAGACATTGC+TGG 0.442846 4_2:-61694431 None:intergenic
ACATTAATCTTCTGGTTACA+AGG 0.444554 4_2:-61695764 None:intergenic
CAGAAGACATTGCTGGAACC+TGG 0.448111 4_2:-61694151 None:intergenic
TGTCAAAGTCCATGTGTCTC+TGG 0.448970 4_2:-61695502 None:intergenic
AGCGTACACGTGTACGAAGA+TGG 0.450787 4_2:+61691507 Msa0613090:exon
GAAGTGACAACATAGGATAT+TGG 0.458231 4_2:+61696138 Msa0613090:three_prime_UTR
GCTGTTATCCGGCACGGCAC+TGG 0.459398 4_2:+61691583 Msa0613090:CDS
GATGGCAGCGATCCTGCCTC+GGG 0.461840 4_2:+61695800 Msa0613090:CDS
GACAGCTTTCTTGATGTGTA+AGG 0.464881 4_2:-61695891 None:intergenic
CCAAAAGGAAGTATATCAAA+TGG 0.468725 4_2:+61696114 Msa0613090:three_prime_UTR
CGATGGCAGCGATCCTGCCT+CGG 0.469474 4_2:+61695799 Msa0613090:CDS
AGATCTCGCCTGGTGTTTCA+GGG 0.481234 4_2:+61694183 Msa0613090:CDS
TGGTAGAACTTTCTTTCAGC+CGG 0.484226 4_2:-61694646 None:intergenic
TGGTTACAAGGGCGGACACT+TGG 0.484662 4_2:-61695752 None:intergenic
ACTAAAGAGTTGTCAAAGGA+TGG 0.489392 4_2:+61694074 Msa0613090:CDS
AGAAATCAGAAGATTCAATT+GGG 0.490341 4_2:+61693664 Msa0613090:CDS
ACCAATCACCAGTGCCGTGC+CGG 0.491886 4_2:-61691591 None:intergenic
AAATCTTTAATATTAATTCA+AGG 0.492156 4_2:+61690968 Msa0613090:five_prime_UTR
AAATGAAGGAAAAGAAAAGA+CGG 0.493555 4_2:+61695960 Msa0613090:CDS
CTTGTTGACAACAACTCAGT+TGG 0.494073 4_2:+61694002 Msa0613090:CDS
AGCACCGGGTGCGTAGGATT+AGG 0.496693 4_2:+61691445 Msa0613090:five_prime_UTR
AGAGGAATGAGGTAAGAAGA+AGG 0.497900 4_2:-61691204 None:intergenic
AGATTACGCCTGGTGTTTCA+GGG 0.501278 4_2:+61694456 Msa0613090:CDS
AAAAGAAAAGACGGAGAACT+AGG 0.503354 4_2:+61695969 Msa0613090:CDS
TCTCATTCTTGTCAGCCTTG+AGG 0.505573 4_2:-61693965 None:intergenic
TGGTTTCAATCAATAGGTAG+TGG 0.509373 4_2:-61691065 None:intergenic
AGAAATTCATTTGATTGAGT+GGG 0.518852 4_2:-61691252 None:intergenic
CTGTCGCAAGCATGATAGCC+AGG 0.522128 4_2:+61694796 Msa0613090:CDS
GAAGACATGGAGATCTCGCC+TGG 0.524803 4_2:+61694173 Msa0613090:CDS
AGCGGAAGTGATTGTGACGT+GGG 0.526318 4_2:+61691531 Msa0613090:CDS
ACTAAAGAGACGTCAAAGGA+TGG 0.530356 4_2:+61694347 Msa0613090:CDS
GATAAGTTGACAGATACAGC+TGG 0.532080 4_2:+61694236 Msa0613090:CDS
GAGAGGAAAGAGAAAGAGGA+AGG 0.532691 4_2:+61694562 Msa0613090:CDS
GAATCTTATGAAGGAAATGA+AGG 0.534107 4_2:+61695946 Msa0613090:CDS
GGTAGAACTTTCTTTCAGCC+GGG 0.535651 4_2:-61694645 None:intergenic
TCAAAGGATGGGTTATCTGC+TGG 0.536634 4_2:+61694359 Msa0613090:CDS
ACTCTCTCCAATTTCTGTGA+AGG 0.536812 4_2:-61694314 None:intergenic
GGTTACAAGGGCGGACACTT+GGG 0.540653 4_2:-61695751 None:intergenic
CAACAAAACAATTGATTCAG+TGG 0.544548 4_2:+61695544 Msa0613090:CDS
TCGTCGCGGCGGAGCTCCGA+GGG 0.544805 4_2:+61691617 Msa0613090:CDS
AAACTGGTCTCATGAATGCC+AGG 0.546467 4_2:+61694133 Msa0613090:CDS
GTAGAACAGCAAAGCATTGG+TGG 0.547197 4_2:-61695597 None:intergenic
TCGGAGCTCCGCCGCGACGA+CGG 0.548546 4_2:-61691614 None:intergenic
TGCAACTCCGAATCTTATGA+AGG 0.548743 4_2:+61695937 Msa0613090:CDS
CAAAGGATGGGCTATCTGCT+GGG 0.550496 4_2:+61694087 Msa0613090:CDS
TTCATGAGACCAGTTTGTAT+CGG 0.551753 4_2:-61694126 None:intergenic
CCAGAAGATTAATGTTGCAA+AGG 0.552998 4_2:+61695772 Msa0613090:CDS
GGAGTAGAACAGCAAAGCAT+TGG 0.553418 4_2:-61695600 None:intergenic
GGCTCCTAATCCTACGCACC+CGG 0.554751 4_2:-61691449 None:intergenic
TTATTAGGGTTAATCGGAGA+AGG 0.560583 4_2:+61691368 Msa0613090:five_prime_UTR
GTCGTCGCGGCGGAGCTCCG+AGG 0.563753 4_2:+61691616 Msa0613090:CDS
GAAGACATGGAGATTACGCC+TGG 0.563944 4_2:+61694446 Msa0613090:CDS
CGAGGCAGGATCGCTGCCAT+CGG 0.565755 4_2:-61695798 None:intergenic
ACACTTGGGACTTTCAAAGA+AGG 0.569561 4_2:-61695737 None:intergenic
CTAAAGAGTTGTCAAAGGAT+GGG 0.572945 4_2:+61694075 Msa0613090:CDS
TGTAAGGATTTCACCGAAGA+CGG 0.573201 4_2:-61695875 None:intergenic
GCGTACACGTGTACGAAGAT+GGG 0.575736 4_2:+61691508 Msa0613090:exon
TAGTGCAGACTTATATTGAC+GGG 0.575938 4_2:-61695630 None:intergenic
GGTGTAATAGCGGAAGGAGA+AGG 0.576294 4_2:-61691646 None:intergenic
GGTGGAGCTGTTATCCGGCA+CGG 0.577297 4_2:+61691577 Msa0613090:CDS
ACTCTCTCTAATTTCTGTGA+AGG 0.579129 4_2:-61694041 None:intergenic
GCCAAGAAGCCTAGTAGTGG+TGG 0.579439 4_2:+61695836 Msa0613090:CDS
GGATGAAACGAAAGATCTGA+TGG 0.581786 4_2:+61694730 Msa0613090:CDS
CTAAAGAGACGTCAAAGGAT+GGG 0.581958 4_2:+61694348 Msa0613090:CDS
AGCAATGTCTTCTGAAGACA+TGG 0.586266 4_2:+61694160 Msa0613090:CDS
AGCAATGTCTTCTGAAGACA+TGG 0.586266 4_2:+61694433 Msa0613090:CDS
ACCTCGGGTGTAATAGCGGA+AGG 0.590376 4_2:-61691652 None:intergenic
TTCTACTAAAGAGTTGTCAA+AGG 0.593159 4_2:+61694070 Msa0613090:CDS
AACCCTAATAAGATGCTCGT+CGG 0.594773 4_2:-61691356 None:intergenic
AACGTTAGCACCGGGTGCGT+AGG 0.596185 4_2:+61691439 Msa0613090:five_prime_UTR
AAGGAGAAGGAGTTCTCCCT+CGG 0.596440 4_2:-61691633 None:intergenic
TTTGATAGCAGAAGCGACAA+AGG 0.602191 4_2:+61695465 Msa0613090:intron
TCCTTCCGCTATTACACCCG+AGG 0.606450 4_2:+61691651 Msa0613090:CDS
ATCAAAGCTTGAATCCCTCA+AGG 0.606788 4_2:+61693950 Msa0613090:CDS
TTGACAGAGACTGTATATGA+AGG 0.607121 4_2:+61694515 Msa0613090:CDS
GAGCGGAAGTGATTGTGACG+TGG 0.615869 4_2:+61691530 Msa0613090:CDS
CATTAATCTTCTGGTTACAA+GGG 0.620404 4_2:-61695763 None:intergenic
CACATCAAGAAAGCTGTCGG+TGG 0.621814 4_2:+61695896 Msa0613090:CDS
TATTACCTCGGGTGTAATAG+CGG 0.621851 4_2:-61691656 None:intergenic
AAATGGAGAAGTGACAACAT+AGG 0.622736 4_2:+61696131 Msa0613090:three_prime_UTR
TGGTGATTGGTCCGTCGTCG+CGG 0.623067 4_2:+61691603 Msa0613090:CDS
TTAGGGTTAATCGGAGAAGG+TGG 0.626812 4_2:+61691371 Msa0613090:five_prime_UTR
AGATTACAGTAACTAACTGG+TGG 0.627243 4_2:+61696037 Msa0613090:three_prime_UTR
GAAAGTTCTACCAGCAACTG+TGG 0.627439 4_2:+61694656 Msa0613090:CDS
TCAATAGACCCTGAAACACC+AGG 0.632152 4_2:-61694191 None:intergenic
TTCAACTAAAGAGACGTCAA+AGG 0.633541 4_2:+61694343 Msa0613090:CDS
CAAATCTTCTGGTGTAACTG+AGG 0.633623 4_2:+61694688 Msa0613090:CDS
GTAGTGCAGACTTATATTGA+CGG 0.634239 4_2:-61695631 None:intergenic
TCGGTTGACCCTGAAACACC+AGG 0.635035 4_2:-61694464 None:intergenic
TAATCTTCTGGTTACAAGGG+CGG 0.635573 4_2:-61695760 None:intergenic
TTCTACCAGCAACTGTGGTG+AGG 0.636519 4_2:+61694661 Msa0613090:CDS
TTACACATCAAGAAAGCTGT+CGG 0.641394 4_2:+61695893 Msa0613090:CDS
ATAAGTTGACAGATACAGCT+GGG 0.644236 4_2:+61694237 Msa0613090:CDS
AATGTTGCAAAGGTAGCCGA+TGG 0.645708 4_2:+61695782 Msa0613090:CDS
GCGGAAGTGATTGTGACGTG+GGG 0.650849 4_2:+61691532 Msa0613090:CDS
TGGCAGCGATCCTGCCTCGG+GGG 0.651961 4_2:+61695802 Msa0613090:CDS
ATGGCAGCGATCCTGCCTCG+GGG 0.654156 4_2:+61695801 Msa0613090:CDS
GAGACTGTATATGAAGGACA+TGG 0.658527 4_2:+61694521 Msa0613090:CDS
AAAGCCAAGAAGCCTAGTAG+TGG 0.670404 4_2:+61695833 Msa0613090:CDS
CTGTATATGAAGGACATGGA+GGG 0.672772 4_2:+61694525 Msa0613090:CDS
GCAGTTAATCCAGAGACACA+TGG 0.675440 4_2:+61695493 Msa0613090:CDS
ACTGTATATGAAGGACATGG+AGG 0.676971 4_2:+61694524 Msa0613090:CDS
CACGTGTACGAAGATGGGAG+CGG 0.678942 4_2:+61691513 Msa0613090:exon
CGGAAGTGATTGTGACGTGG+GGG 0.689342 4_2:+61691533 Msa0613090:CDS
TGATTGGTCCGTCGTCGCGG+CGG 0.715637 4_2:+61691606 Msa0613090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCTTTAATATTAATTCA+AGG + chr4_2:61690968-61690987 Msa0613090:five_prime_UTR 10.0%
!! AATATTAATATTTATTACCT+CGG - chr4_2:61691671-61691690 None:intergenic 10.0%
!!! TTTTTATCATAAACTAAATT+GGG - chr4_2:61691993-61692012 None:intergenic 10.0%
!!! TTTTTTATCATAAACTAAAT+TGG - chr4_2:61691994-61692013 None:intergenic 10.0%
!! AAAATGCTAAAATATATTAA+TGG + chr4_2:61692682-61692701 Msa0613090:intron 10.0%
!!! TCATAGTTTTTTTTTTTTAT+TGG + chr4_2:61692835-61692854 Msa0613090:intron 10.0%
!!! TCTTTTTATTTAAATATGTT+AGG - chr4_2:61693047-61693066 None:intergenic 10.0%
!! AACATATTTAAATAAAAAGA+TGG + chr4_2:61693047-61693066 Msa0613090:intron 10.0%
!!! TTTTTTTTTTTCAATTTACG+AGG + chr4_2:61691399-61691418 Msa0613090:five_prime_UTR 15.0%
!! ATATTAATATTTATTACCTC+GGG - chr4_2:61691670-61691689 None:intergenic 15.0%
!! CAATTCAAACATAATTTAAT+TGG + chr4_2:61691764-61691783 Msa0613090:intron 15.0%
!! TTATTGAATTGAATTGAATA+TGG + chr4_2:61692382-61692401 Msa0613090:intron 15.0%
!!! ATTTTTCATTCATTTTCAAA+TGG + chr4_2:61692712-61692731 Msa0613090:intron 15.0%
!!! TTTTTCATTCATTTTCAAAT+GGG + chr4_2:61692713-61692732 Msa0613090:intron 15.0%
!! CATTGTATTATATGATAATA+TGG + chr4_2:61693576-61693595 Msa0613090:intron 15.0%
!!! ATAATGTTTTTGATGATAAT+AGG + chr4_2:61694876-61694895 Msa0613090:intron 15.0%
!!! TACTATTATGTTTCTATATT+TGG + chr4_2:61695114-61695133 Msa0613090:intron 15.0%
!! AAATTTATAATCATCCAAAT+TGG - chr4_2:61695161-61695180 None:intergenic 15.0%
!!! TTAATATTAAAGATTTTGCG+CGG - chr4_2:61690964-61690983 None:intergenic 20.0%
!!! TTTTTTTGGTTTCAATCAAT+AGG - chr4_2:61691074-61691093 None:intergenic 20.0%
!!! CCTGTGTTTTTATTTTTTTT+TGG - chr4_2:61691088-61691107 None:intergenic 20.0%
!! CCAAAAAAAAATAAAAACAC+AGG + chr4_2:61691085-61691104 Msa0613090:five_prime_UTR 20.0%
!! CATGTACTATTAAAATTGTT+GGG - chr4_2:61691123-61691142 None:intergenic 20.0%
!! TCATGTACTATTAAAATTGT+TGG - chr4_2:61691124-61691143 None:intergenic 20.0%
!! CAAAAACAAAAACAAAACTA+TGG - chr4_2:61691178-61691197 None:intergenic 20.0%
!! ACCATGTAATAATAATGTAA+CGG - chr4_2:61691804-61691823 None:intergenic 20.0%
!! ACCATGTAATAATAATGTAA+CGG - chr4_2:61691804-61691823 None:intergenic 20.0%
!! AAAAAAAACAATATTACACC+TGG + chr4_2:61692013-61692032 Msa0613090:intron 20.0%
!! TTTATCATGAAATAAAAACC+AGG - chr4_2:61692034-61692053 None:intergenic 20.0%
!! ATTTAACTCGTTATAATAGA+GGG - chr4_2:61692146-61692165 None:intergenic 20.0%
!! ATACAACAAATTGAATAAAG+TGG - chr4_2:61692529-61692548 None:intergenic 20.0%
!! CATTATATCATATATGCATA+TGG + chr4_2:61692549-61692568 Msa0613090:intron 20.0%
!!! TTGTTCTAAGTATTTGTTAA+CGG + chr4_2:61692600-61692619 Msa0613090:intron 20.0%
!!! GTTTATTTTGTTCCTAAATT+TGG + chr4_2:61693279-61693298 Msa0613090:intron 20.0%
!! AATAAAATCAACAGTTGAAA+AGG - chr4_2:61693313-61693332 None:intergenic 20.0%
!! AAACTGAAAAATCAACTAAA+GGG - chr4_2:61694846-61694865 None:intergenic 20.0%
!! AAAACTGAAAAATCAACTAA+AGG - chr4_2:61694847-61694866 None:intergenic 20.0%
!! TATCATCAAAAACATTATTG+AGG - chr4_2:61694874-61694893 None:intergenic 20.0%
!! TATTAAAGATGAAATGCAAA+TGG - chr4_2:61694917-61694936 None:intergenic 20.0%
!!! TATTTTTTTTCTTCCACATT+AGG + chr4_2:61694939-61694958 Msa0613090:intron 20.0%
!!! TTTTCCAAAATAAGTTTGTT+TGG - chr4_2:61695048-61695067 None:intergenic 20.0%
!! ATCATTATTAAACACCAATT+TGG + chr4_2:61695144-61695163 Msa0613090:intron 20.0%
!!! TTTTTCGTCAATGTAAATAT+AGG + chr4_2:61695213-61695232 Msa0613090:intron 20.0%
!!! TTTTCGTCAATGTAAATATA+GGG + chr4_2:61695214-61695233 Msa0613090:intron 20.0%
!! TATAACAAGTTTCAAATCAT+TGG - chr4_2:61696003-61696022 None:intergenic 20.0%
!!! TTATTTTTGTTTTTGCCAAA+AGG + chr4_2:61696099-61696118 Msa0613090:three_prime_UTR 20.0%
!! TTTTTGTGAAATGACGATTA+TGG - chr4_2:61691029-61691048 None:intergenic 25.0%
!!! ATAGGTAGTGGTTTTTATTT+GGG - chr4_2:61691056-61691075 None:intergenic 25.0%
!!! AATAGGTAGTGGTTTTTATT+TGG - chr4_2:61691057-61691076 None:intergenic 25.0%
!! AAGGTTTGAAATTGAAAAAG+AGG - chr4_2:61691225-61691244 None:intergenic 25.0%
! AGAAATTCATTTGATTGAGT+GGG - chr4_2:61691255-61691274 None:intergenic 25.0%
! AAGAAATTCATTTGATTGAG+TGG - chr4_2:61691256-61691275 None:intergenic 25.0%
!!! TTCCTTTTTTTTCTTTGTCA+GGG - chr4_2:61691283-61691302 None:intergenic 25.0%
!!! TTTCCTTTTTTTTCTTTGTC+AGG - chr4_2:61691284-61691303 None:intergenic 25.0%
!!! TTTTTTTCAATTTACGAGGT+CGG + chr4_2:61691403-61691422 Msa0613090:five_prime_UTR 25.0%
! ACCGTTACATTATTATTACA+TGG + chr4_2:61691800-61691819 Msa0613090:intron 25.0%
! AGTTTAATGAATTGTCAATC+AGG - chr4_2:61691827-61691846 None:intergenic 25.0%
! TCCGTTACATTATTATTACA+TGG + chr4_2:61691877-61691896 Msa0613090:intron 25.0%
! AGTTTAATGAATTGTCAATC+AGG - chr4_2:61691827-61691846 None:intergenic 25.0%
! GATTTAACTCGTTATAATAG+AGG - chr4_2:61692147-61692166 None:intergenic 25.0%
! TTATTATTGCTCACATTCTT+CGG - chr4_2:61692319-61692338 None:intergenic 25.0%
!!! AACAAAAAGAGTGTTCTATT+TGG + chr4_2:61692432-61692451 Msa0613090:intron 25.0%
! TATACAATGGTTATGGTTAT+GGG + chr4_2:61692470-61692489 Msa0613090:intron 25.0%
! ATAACTTAGCATAGTAATTG+AGG - chr4_2:61692788-61692807 None:intergenic 25.0%
! ATTACTATGCTAAGTTATGT+TGG + chr4_2:61692790-61692809 Msa0613090:intron 25.0%
! CTAAATCTCAATTGTTTCAT+AGG + chr4_2:61692958-61692977 Msa0613090:intron 25.0%
! TTAGAACTTAGAAATGTTTG+TGG - chr4_2:61693002-61693021 None:intergenic 25.0%
! ACAAACATTTCTAAGTTCTA+AGG + chr4_2:61693001-61693020 Msa0613090:intron 25.0%
! GAAATAAAGAATGATAAGAG+TGG - chr4_2:61693208-61693227 None:intergenic 25.0%
! ACAAAATAAACCTAACAAGA+AGG - chr4_2:61693270-61693289 None:intergenic 25.0%
!!! TAGTGAATTATCATTTTTGC+AGG + chr4_2:61693338-61693357 Msa0613090:intron 25.0%
!! TTGTTTAAATTTTCCCAACT+TGG + chr4_2:61693439-61693458 Msa0613090:intron 25.0%
! TACAATGAGATATACTATAC+AGG - chr4_2:61693563-61693582 None:intergenic 25.0%
! AGAAATCAGAAGATTCAATT+GGG + chr4_2:61693664-61693683 Msa0613090:CDS 25.0%
! ATTCAAAACTTTCTCATGTT+CGG - chr4_2:61694213-61694232 None:intergenic 25.0%
!!! GATTCTGTTTTGGAAATTAA+AGG + chr4_2:61694761-61694780 Msa0613090:CDS 25.0%
!! AAATTTTTCATTGCCTAATG+TGG - chr4_2:61694955-61694974 None:intergenic 25.0%
! ACATTAGGCAATGAAAAATT+TGG + chr4_2:61694954-61694973 Msa0613090:intron 25.0%
!!! TTTTCCAAAATTAGTCTGTT+TGG - chr4_2:61695004-61695023 None:intergenic 25.0%
!! TGAACCAAACAAACTTATTT+TGG + chr4_2:61695041-61695060 Msa0613090:intron 25.0%
!!! ACATGAAACTAGTTTTTGTT+TGG - chr4_2:61695084-61695103 None:intergenic 25.0%
!! TCTTTTGATCCTTTTATTCT+TGG + chr4_2:61695242-61695261 Msa0613090:intron 25.0%
! AGATTCAAACCAAGAATAAA+AGG - chr4_2:61695254-61695273 None:intergenic 25.0%
! TCGTAAACAATTTCAAAAGT+AGG - chr4_2:61695385-61695404 None:intergenic 25.0%
!!! CTTTTGAAATTGTTTACGAA+TGG + chr4_2:61695386-61695405 Msa0613090:intron 25.0%
! TATTGTCAAAGAAAAACTGA+CGG + chr4_2:61695664-61695683 Msa0613090:CDS 25.0%
! TTCATTTCCTTCATAAGATT+CGG - chr4_2:61695947-61695966 None:intergenic 25.0%
! AAATGAAGGAAAAGAAAAGA+CGG + chr4_2:61695960-61695979 Msa0613090:CDS 25.0%
!! ATTATGGTGTTGAATGCTTT+TGG - chr4_2:61691013-61691032 None:intergenic 30.0%
!! TAGGTAGTGGTTTTTATTTG+GGG - chr4_2:61691055-61691074 None:intergenic 30.0%
GAAATTGAAAAAGAGGAATG+AGG - chr4_2:61691218-61691237 None:intergenic 30.0%
!!! TCCTTTTTTTTCTTTGTCAG+GGG - chr4_2:61691282-61691301 None:intergenic 30.0%
!!! AATGTGGTTTTGTCAATTCT+GGG - chr4_2:61691326-61691345 None:intergenic 30.0%
!!! AAATGTGGTTTTGTCAATTC+TGG - chr4_2:61691327-61691346 None:intergenic 30.0%
AGCATCTTATTAGGGTTAAT+CGG + chr4_2:61691362-61691381 Msa0613090:five_prime_UTR 30.0%
!!! TTTTTTGTTAACGTTAGCAC+CGG + chr4_2:61691430-61691449 Msa0613090:five_prime_UTR 30.0%
!!! AACACCACTTGTTTTTTTCA+AGG - chr4_2:61691473-61691492 None:intergenic 30.0%
! ATCAGAGTAAAAACCCATTT+TGG + chr4_2:61691953-61691972 Msa0613090:intron 30.0%
! TCTAACAGCTTGATTTTGTT+AGG + chr4_2:61692165-61692184 Msa0613090:intron 30.0%
! CTAACAGCTTGATTTTGTTA+GGG + chr4_2:61692166-61692185 Msa0613090:intron 30.0%
TAAATTGCAAGTCTCTATTC+TGG + chr4_2:61692190-61692209 Msa0613090:intron 30.0%
! CTCTATTCTGGCTATTAATT+CGG + chr4_2:61692202-61692221 Msa0613090:intron 30.0%
AAAATTGTGTTCTCTTGACA+AGG + chr4_2:61692257-61692276 Msa0613090:intron 30.0%
TTAAAGCAATGCATGATGTA+TGG + chr4_2:61692409-61692428 Msa0613090:intron 30.0%
! TTTTGCGTATACAATGGTTA+TGG + chr4_2:61692463-61692482 Msa0613090:intron 30.0%
GTATACAATGGTTATGGTTA+TGG + chr4_2:61692469-61692488 Msa0613090:intron 30.0%
ATATATGCATATGGTTGTTG+AGG + chr4_2:61692558-61692577 Msa0613090:intron 30.0%
ATGTGCTTAAAATAGAGGTT+TGG - chr4_2:61692626-61692645 None:intergenic 30.0%
!! AAACCTCTATTTTAAGCACA+TGG + chr4_2:61692625-61692644 Msa0613090:intron 30.0%
!!! AGTTCTAAGGAACTTTTCAT+TGG + chr4_2:61693014-61693033 Msa0613090:intron 30.0%
CTGTTGCAATTCTTCATATT+TGG - chr4_2:61693373-61693392 None:intergenic 30.0%
GAGAAATCAGAAGATTCAAT+TGG + chr4_2:61693663-61693682 Msa0613090:CDS 30.0%
GACATAATCTCAGCTTAAAA+AGG - chr4_2:61693712-61693731 None:intergenic 30.0%
TGTGTGTAAACCTATAGATT+TGG - chr4_2:61693803-61693822 None:intergenic 30.0%
! TAACTGTACATCTTTGTTTC+AGG + chr4_2:61693919-61693938 Msa0613090:intron 30.0%
TTCTACTAAAGAGTTGTCAA+AGG + chr4_2:61694070-61694089 Msa0613090:CDS 30.0%
!!! ATGGAGGGTGTTTTAAAAAA+AGG + chr4_2:61694540-61694559 Msa0613090:CDS 30.0%
ACTCGCTTCATTAATATTTC+TGG - chr4_2:61694594-61694613 None:intergenic 30.0%
!! ATTTTTCAATTGATGTGTCC+CGG + chr4_2:61694627-61694646 Msa0613090:CDS 30.0%
! TGAACCAAACAGACTAATTT+TGG + chr4_2:61694997-61695016 Msa0613090:intron 30.0%
! CAACAAAACAATTGATTCAG+TGG + chr4_2:61695544-61695563 Msa0613090:CDS 30.0%
! CATTAATCTTCTGGTTACAA+GGG - chr4_2:61695766-61695785 None:intergenic 30.0%
! ACATTAATCTTCTGGTTACA+AGG - chr4_2:61695767-61695786 None:intergenic 30.0%
GAATCTTATGAAGGAAATGA+AGG + chr4_2:61695946-61695965 Msa0613090:CDS 30.0%
TCTAGATTACAGTAACTAAC+TGG + chr4_2:61696034-61696053 Msa0613090:three_prime_UTR 30.0%
! CCATTTGATATACTTCCTTT+TGG - chr4_2:61696117-61696136 None:intergenic 30.0%
! CCAAAAGGAAGTATATCAAA+TGG + chr4_2:61696114-61696133 Msa0613090:three_prime_UTR 30.0%
TGGTTTCAATCAATAGGTAG+TGG - chr4_2:61691068-61691087 None:intergenic 35.0%
ACCCCTGACAAAGAAAAAAA+AGG + chr4_2:61691278-61691297 Msa0613090:five_prime_UTR 35.0%
CGTCGGAAAATTGAAAAATG+TGG - chr4_2:61691342-61691361 None:intergenic 35.0%
TTATTAGGGTTAATCGGAGA+AGG + chr4_2:61691368-61691387 Msa0613090:five_prime_UTR 35.0%
! TTTTTGTTAACGTTAGCACC+GGG + chr4_2:61691431-61691450 Msa0613090:five_prime_UTR 35.0%
AATAGAGGGACTAATGTGTT+CGG - chr4_2:61692132-61692151 None:intergenic 35.0%
! AACGTGTTTTGCGTATACAA+TGG + chr4_2:61692457-61692476 Msa0613090:intron 35.0%
AAGCCATGTGCTTAAAATAG+AGG - chr4_2:61692631-61692650 None:intergenic 35.0%
!! TCTATTTTAAGCACATGGCT+TGG + chr4_2:61692630-61692649 Msa0613090:intron 35.0%
AAAGATGGTGTATAACCATG+TGG + chr4_2:61693062-61693081 Msa0613090:intron 35.0%
TCATTGAGACATAAACCACA+TGG - chr4_2:61693131-61693150 None:intergenic 35.0%
! TGCTACTTACATTGATGAGA+TGG + chr4_2:61693174-61693193 Msa0613090:intron 35.0%
TAAACCTAACAAGAAGGCTT+TGG - chr4_2:61693264-61693283 None:intergenic 35.0%
AAGGCATGTGTTCCAAATTT+AGG - chr4_2:61693294-61693313 None:intergenic 35.0%
AAAAGATGTAGTGCCAAGTT+GGG - chr4_2:61693455-61693474 None:intergenic 35.0%
AAAAAGATGTAGTGCCAAGT+TGG - chr4_2:61693456-61693475 None:intergenic 35.0%
TATGATAATATGGCACTGCT+AGG + chr4_2:61693586-61693605 Msa0613090:intron 35.0%
ATGATAATATGGCACTGCTA+GGG + chr4_2:61693587-61693606 Msa0613090:intron 35.0%
GAAATGTCGACCAAATCTAT+AGG + chr4_2:61693790-61693809 Msa0613090:intron 35.0%
AGATTTCTATGATCCACTGT+TGG + chr4_2:61693873-61693892 Msa0613090:intron 35.0%
! ATCCACTGTTGGATTTTCAT+CGG + chr4_2:61693884-61693903 Msa0613090:intron 35.0%
!!! TGTTGGATTTTCATCGGTTT+GGG + chr4_2:61693890-61693909 Msa0613090:intron 35.0%
TGTGAAGGAACATCTAATTC+TGG - chr4_2:61694029-61694048 None:intergenic 35.0%
ACTCTCTCTAATTTCTGTGA+AGG - chr4_2:61694044-61694063 None:intergenic 35.0%
ACTAAAGAGTTGTCAAAGGA+TGG + chr4_2:61694074-61694093 Msa0613090:CDS 35.0%
CTAAAGAGTTGTCAAAGGAT+GGG + chr4_2:61694075-61694094 Msa0613090:CDS 35.0%
TTCATGAGACCAGTTTGTAT+CGG - chr4_2:61694129-61694148 None:intergenic 35.0%
! ATAAGTTGACAGATACAGCT+GGG + chr4_2:61694237-61694256 Msa0613090:CDS 35.0%
ACATGTTCCTTCACAGAAAT+TGG + chr4_2:61694307-61694326 Msa0613090:CDS 35.0%
TTCAACTAAAGAGACGTCAA+AGG + chr4_2:61694343-61694362 Msa0613090:CDS 35.0%
! TTCTTGAGACCAGTTTTTCT+GGG - chr4_2:61694402-61694421 None:intergenic 35.0%
! ATTCTTGAGACCAGTTTTTC+TGG - chr4_2:61694403-61694422 None:intergenic 35.0%
TTGACAGAGACTGTATATGA+AGG + chr4_2:61694515-61694534 Msa0613090:CDS 35.0%
!!! GGGTGTTTTAAAAAAAGGAG+AGG + chr4_2:61694545-61694564 Msa0613090:CDS 35.0%
! GGCGATTTTAGATTCTGTTT+TGG + chr4_2:61694751-61694770 Msa0613090:CDS 35.0%
TGCAAATGGCAATAAACTAG+TGG - chr4_2:61694903-61694922 None:intergenic 35.0%
ACATGGACTTTGACACTATA+AGG + chr4_2:61695510-61695529 Msa0613090:CDS 35.0%
TAGTGCAGACTTATATTGAC+GGG - chr4_2:61695633-61695652 None:intergenic 35.0%
GTAGTGCAGACTTATATTGA+CGG - chr4_2:61695634-61695653 None:intergenic 35.0%
CCTTTGCAACATTAATCTTC+TGG - chr4_2:61695775-61695794 None:intergenic 35.0%
CCAGAAGATTAATGTTGCAA+AGG + chr4_2:61695772-61695791 Msa0613090:CDS 35.0%
TTACACATCAAGAAAGCTGT+CGG + chr4_2:61695893-61695912 Msa0613090:CDS 35.0%
AAAAGAAAAGACGGAGAACT+AGG + chr4_2:61695969-61695988 Msa0613090:CDS 35.0%
AGATTACAGTAACTAACTGG+TGG + chr4_2:61696037-61696056 Msa0613090:three_prime_UTR 35.0%
AAATGGAGAAGTGACAACAT+AGG + chr4_2:61696131-61696150 Msa0613090:three_prime_UTR 35.0%
GAAGTGACAACATAGGATAT+TGG + chr4_2:61696138-61696157 Msa0613090:three_prime_UTR 35.0%
AGAGGAATGAGGTAAGAAGA+AGG - chr4_2:61691207-61691226 None:intergenic 40.0%
TTCATTTGATTGAGTGGGAC+AGG - chr4_2:61691250-61691269 None:intergenic 40.0%
!!! TGGTTTTGTCAATTCTGGGT+GGG - chr4_2:61691322-61691341 None:intergenic 40.0%
TTTCCGACGAGCATCTTATT+AGG + chr4_2:61691353-61691372 Msa0613090:five_prime_UTR 40.0%
TTCCGACGAGCATCTTATTA+GGG + chr4_2:61691354-61691373 Msa0613090:five_prime_UTR 40.0%
AACCCTAATAAGATGCTCGT+CGG - chr4_2:61691359-61691378 None:intergenic 40.0%
GGAGCCTTGAAAAAAACAAG+TGG + chr4_2:61691466-61691485 Msa0613090:five_prime_UTR 40.0%
TATTACCTCGGGTGTAATAG+CGG - chr4_2:61691659-61691678 None:intergenic 40.0%
CAAGAGCAAAGGACCAAAAT+GGG - chr4_2:61691969-61691988 None:intergenic 40.0%
!! TCATGTGGTGCCAATTGTTT+TGG + chr4_2:61692499-61692518 Msa0613090:intron 40.0%
AAGTGGCGAACCAAAACAAT+TGG - chr4_2:61692512-61692531 None:intergenic 40.0%
TATGCATATGGTTGTTGAGG+TGG + chr4_2:61692561-61692580 Msa0613090:intron 40.0%
! AGAACACGAGCATGTGTTTT+AGG - chr4_2:61692660-61692679 None:intergenic 40.0%
! ACCATGTGGTTTGTGATTGT+TGG + chr4_2:61693076-61693095 Msa0613090:intron 40.0%
ACCAACAATCACAAACCACA+TGG - chr4_2:61693080-61693099 None:intergenic 40.0%
TCAGAGTCTCTATAACCATG+TGG + chr4_2:61693113-61693132 Msa0613090:intron 40.0%
TATGCCAAAGCCTTCTTGTT+AGG + chr4_2:61693257-61693276 Msa0613090:intron 40.0%
AACCGATGAAAATCCAACAG+TGG - chr4_2:61693889-61693908 None:intergenic 40.0%
!! CTGTTGGATTTTCATCGGTT+TGG + chr4_2:61693889-61693908 Msa0613090:intron 40.0%
ATCAAAGCTTGAATCCCTCA+AGG + chr4_2:61693950-61693969 Msa0613090:CDS 40.0%
CTTGTTGACAACAACTCAGT+TGG + chr4_2:61694002-61694021 Msa0613090:CDS 40.0%
CACATCAAACCGATACAAAC+TGG + chr4_2:61694117-61694136 Msa0613090:CDS 40.0%
ATGTCTTCAGAAGACATTGC+TGG - chr4_2:61694161-61694180 None:intergenic 40.0%
! AGCAATGTCTTCTGAAGACA+TGG + chr4_2:61694160-61694179 Msa0613090:CDS 40.0%
! GATAAGTTGACAGATACAGC+TGG + chr4_2:61694236-61694255 Msa0613090:CDS 40.0%
TGTGAAGGAACATGTGATTC+TGG - chr4_2:61694302-61694321 None:intergenic 40.0%
ACTCTCTCCAATTTCTGTGA+AGG - chr4_2:61694317-61694336 None:intergenic 40.0%
ACTAAAGAGACGTCAAAGGA+TGG + chr4_2:61694347-61694366 Msa0613090:CDS 40.0%
CTAAAGAGACGTCAAAGGAT+GGG + chr4_2:61694348-61694367 Msa0613090:CDS 40.0%
CACATCAAACCCAGAAAAAC+TGG + chr4_2:61694390-61694409 Msa0613090:CDS 40.0%
ATGTCTTCAGAAGACATTGC+TGG - chr4_2:61694161-61694180 None:intergenic 40.0%
! AGCAATGTCTTCTGAAGACA+TGG + chr4_2:61694160-61694179 Msa0613090:CDS 40.0%
GAGACTGTATATGAAGGACA+TGG + chr4_2:61694521-61694540 Msa0613090:CDS 40.0%
ACTGTATATGAAGGACATGG+AGG + chr4_2:61694524-61694543 Msa0613090:CDS 40.0%
CTGTATATGAAGGACATGGA+GGG + chr4_2:61694525-61694544 Msa0613090:CDS 40.0%
AAAGGAGAGGAAAGAGAAAG+AGG + chr4_2:61694558-61694577 Msa0613090:CDS 40.0%
TGGTAGAACTTTCTTTCAGC+CGG - chr4_2:61694649-61694668 None:intergenic 40.0%
GGTGAGGTTATCAAATCTTC+TGG + chr4_2:61694677-61694696 Msa0613090:CDS 40.0%
CAAATCTTCTGGTGTAACTG+AGG + chr4_2:61694688-61694707 Msa0613090:CDS 40.0%
GGAGAACACGAACTTGAAAA+AGG + chr4_2:61694709-61694728 Msa0613090:CDS 40.0%
GGATGAAACGAAAGATCTGA+TGG + chr4_2:61694730-61694749 Msa0613090:CDS 40.0%
! CAGGATCTTTTACACATACC+TGG - chr4_2:61694817-61694836 None:intergenic 40.0%
ATCAACTAAAGGGAGTGAAC+AGG - chr4_2:61694836-61694855 None:intergenic 40.0%
! GTAGAGATTTGCTCAAGGAA+TGG + chr4_2:61695412-61695431 Msa0613090:intron 40.0%
! TTTGATAGCAGAAGCGACAA+AGG + chr4_2:61695465-61695484 Msa0613090:intron 40.0%
! CTTATATTGACGGGTGTTCT+TGG - chr4_2:61695624-61695643 None:intergenic 40.0%
AAGAAAAACTGACGGAGAAC+AGG + chr4_2:61695672-61695691 Msa0613090:CDS 40.0%
ACACTTGGGACTTTCAAAGA+AGG - chr4_2:61695740-61695759 None:intergenic 40.0%
! TAATCTTCTGGTTACAAGGG+CGG - chr4_2:61695763-61695782 None:intergenic 40.0%
CAAAGAGAATTCTCCGTCTT+CGG + chr4_2:61695862-61695881 Msa0613090:CDS 40.0%
TGTAAGGATTTCACCGAAGA+CGG - chr4_2:61695878-61695897 None:intergenic 40.0%
GACAGCTTTCTTGATGTGTA+AGG - chr4_2:61695894-61695913 None:intergenic 40.0%
TTCATAAGATTCGGAGTTGC+AGG - chr4_2:61695938-61695957 None:intergenic 40.0%
TGCAACTCCGAATCTTATGA+AGG + chr4_2:61695937-61695956 Msa0613090:CDS 40.0%
!! ACTGGTGGTTTTACATCTGT+CGG + chr4_2:61696052-61696071 Msa0613090:three_prime_UTR 40.0%
TGATTGAGTGGGACAGGAAA+AGG - chr4_2:61691244-61691263 None:intergenic 45.0%
!!! GTGGTTTTGTCAATTCTGGG+TGG - chr4_2:61691323-61691342 None:intergenic 45.0%
TTAGGGTTAATCGGAGAAGG+TGG + chr4_2:61691371-61691390 Msa0613090:five_prime_UTR 45.0%
TTCTTGGTGGAGCTGTTATC+CGG + chr4_2:61691572-61691591 Msa0613090:CDS 45.0%
CCAAGAGCAAAGGACCAAAA+TGG - chr4_2:61691970-61691989 None:intergenic 45.0%
!! CCATTTTGGTCCTTTGCTCT+TGG + chr4_2:61691967-61691986 Msa0613090:intron 45.0%
CTAAATTGGGCCAAGAGCAA+AGG - chr4_2:61691980-61691999 None:intergenic 45.0%
CTTTAGACCCACATTCTGAC+TGG + chr4_2:61692291-61692310 Msa0613090:intron 45.0%
TTCGGTTCCAGTCAGAATGT+GGG - chr4_2:61692301-61692320 None:intergenic 45.0%
GGTTATGGGTAGCATTCATG+TGG + chr4_2:61692484-61692503 Msa0613090:intron 45.0%
GAATTGCAACAGCGCTATTC+AGG + chr4_2:61693381-61693400 Msa0613090:CDS 45.0%
AGTGTCATGCTGTCTTTCGA+GGG - chr4_2:61693501-61693520 None:intergenic 45.0%
AAGTGTCATGCTGTCTTTCG+AGG - chr4_2:61693502-61693521 None:intergenic 45.0%
CTCATTCTTGTCAGCCTTGA+GGG - chr4_2:61693967-61693986 None:intergenic 45.0%
TCTCATTCTTGTCAGCCTTG+AGG - chr4_2:61693968-61693987 None:intergenic 45.0%
! AAACTGGTCTCATGAATGCC+AGG + chr4_2:61694133-61694152 Msa0613090:CDS 45.0%
TCAATAGACCCTGAAACACC+AGG - chr4_2:61694194-61694213 None:intergenic 45.0%
!! TCAAAGGATGGGTTATCTGC+TGG + chr4_2:61694359-61694378 Msa0613090:CDS 45.0%
CAGAAGACATTGCTGGAACT+TGG - chr4_2:61694427-61694446 None:intergenic 45.0%
AGATTACGCCTGGTGTTTCA+GGG + chr4_2:61694456-61694475 Msa0613090:CDS 45.0%
GAGAGGAAAGAGAAAGAGGA+AGG + chr4_2:61694562-61694581 Msa0613090:CDS 45.0%
GGTAGAACTTTCTTTCAGCC+GGG - chr4_2:61694648-61694667 None:intergenic 45.0%
GAAAGTTCTACCAGCAACTG+TGG + chr4_2:61694656-61694675 Msa0613090:CDS 45.0%
GCAGTTAATCCAGAGACACA+TGG + chr4_2:61695493-61695512 Msa0613090:CDS 45.0%
TGTCAAAGTCCATGTGTCTC+TGG - chr4_2:61695505-61695524 None:intergenic 45.0%
!! GTAGAACAGCAAAGCATTGG+TGG - chr4_2:61695600-61695619 None:intergenic 45.0%
GGAGTAGAACAGCAAAGCAT+TGG - chr4_2:61695603-61695622 None:intergenic 45.0%
AAAAACTGACGGAGAACAGG+AGG + chr4_2:61695675-61695694 Msa0613090:CDS 45.0%
AATGTTGCAAAGGTAGCCGA+TGG + chr4_2:61695782-61695801 Msa0613090:CDS 45.0%
AAAGCCAAGAAGCCTAGTAG+TGG + chr4_2:61695833-61695852 Msa0613090:CDS 45.0%
TCTTTGCTACCACCACTACT+AGG - chr4_2:61695848-61695867 None:intergenic 45.0%
!! ATAATAAATAAATAAAATAG+TGG - chr4_2:61691710-61691729 None:intergenic 5.0%
AGCGTACACGTGTACGAAGA+TGG + chr4_2:61691507-61691526 Msa0613090:exon 50.0%
GCGTACACGTGTACGAAGAT+GGG + chr4_2:61691508-61691527 Msa0613090:exon 50.0%
AGCGGAAGTGATTGTGACGT+GGG + chr4_2:61691531-61691550 Msa0613090:CDS 50.0%
ACATGGGAGGAGCTTCTTCT+TGG + chr4_2:61691556-61691575 Msa0613090:CDS 50.0%
AAGGAGAAGGAGTTCTCCCT+CGG - chr4_2:61691636-61691655 None:intergenic 50.0%
! GGTGTAATAGCGGAAGGAGA+AGG - chr4_2:61691649-61691668 None:intergenic 50.0%
CTTCGGTTCCAGTCAGAATG+TGG - chr4_2:61692302-61692321 None:intergenic 50.0%
AATATGGCACTGCTAGGGCT+TGG + chr4_2:61693592-61693611 Msa0613090:intron 50.0%
AGCAGAGCTTAAGCGAGCTT+TGG + chr4_2:61693641-61693660 Msa0613090:CDS 50.0%
!! TCAAAGGATGGGCTATCTGC+TGG + chr4_2:61694086-61694105 Msa0613090:CDS 50.0%
!! CAAAGGATGGGCTATCTGCT+GGG + chr4_2:61694087-61694106 Msa0613090:CDS 50.0%
CAGAAGACATTGCTGGAACC+TGG - chr4_2:61694154-61694173 None:intergenic 50.0%
AGATCTCGCCTGGTGTTTCA+GGG + chr4_2:61694183-61694202 Msa0613090:CDS 50.0%
GAAGACATGGAGATTACGCC+TGG + chr4_2:61694446-61694465 Msa0613090:CDS 50.0%
GAGATTACGCCTGGTGTTTC+AGG + chr4_2:61694455-61694474 Msa0613090:CDS 50.0%
TTCTACCAGCAACTGTGGTG+AGG + chr4_2:61694661-61694680 Msa0613090:CDS 50.0%
GATAACCTCACCACAGTTGC+TGG - chr4_2:61694669-61694688 None:intergenic 50.0%
! GGCGAGTAGAGATTTGCTCA+AGG + chr4_2:61695407-61695426 Msa0613090:intron 50.0%
ACCACCACTACTAGGCTTCT+TGG - chr4_2:61695840-61695859 None:intergenic 50.0%
CACATCAAGAAAGCTGTCGG+TGG + chr4_2:61695896-61695915 Msa0613090:CDS 50.0%
CACGTGTACGAAGATGGGAG+CGG + chr4_2:61691513-61691532 Msa0613090:exon 55.0%
GAGCGGAAGTGATTGTGACG+TGG + chr4_2:61691530-61691549 Msa0613090:CDS 55.0%
GCGGAAGTGATTGTGACGTG+GGG + chr4_2:61691532-61691551 Msa0613090:CDS 55.0%
CGGAAGTGATTGTGACGTGG+GGG + chr4_2:61691533-61691552 Msa0613090:CDS 55.0%
TGATTGTGACGTGGGGGACA+TGG + chr4_2:61691539-61691558 Msa0613090:CDS 55.0%
GATTGTGACGTGGGGGACAT+GGG + chr4_2:61691540-61691559 Msa0613090:CDS 55.0%
TGGGAGGAGCTTCTTCTTGG+TGG + chr4_2:61691559-61691578 Msa0613090:CDS 55.0%
TCCTTCCGCTATTACACCCG+AGG + chr4_2:61691651-61691670 Msa0613090:CDS 55.0%
! ACCTCGGGTGTAATAGCGGA+AGG - chr4_2:61691655-61691674 None:intergenic 55.0%
! CACTGCTAGGGCTTGGTATG+AGG + chr4_2:61693599-61693618 Msa0613090:intron 55.0%
GAAGACATGGAGATCTCGCC+TGG + chr4_2:61694173-61694192 Msa0613090:CDS 55.0%
GAGATCTCGCCTGGTGTTTC+AGG + chr4_2:61694182-61694201 Msa0613090:CDS 55.0%
TCGGTTGACCCTGAAACACC+AGG - chr4_2:61694467-61694486 None:intergenic 55.0%
CTGTCGCAAGCATGATAGCC+AGG + chr4_2:61694796-61694815 Msa0613090:CDS 55.0%
GGTTACAAGGGCGGACACTT+GGG - chr4_2:61695754-61695773 None:intergenic 55.0%
TGGTTACAAGGGCGGACACT+TGG - chr4_2:61695755-61695774 None:intergenic 55.0%
! TTATTTGAGACCCCCGAGGC+AGG - chr4_2:61695815-61695834 None:intergenic 55.0%
!! GGCTTTATTTGAGACCCCCG+AGG - chr4_2:61695819-61695838 None:intergenic 55.0%
GCCAAGAAGCCTAGTAGTGG+TGG + chr4_2:61695836-61695855 Msa0613090:CDS 55.0%
! AACGTTAGCACCGGGTGCGT+AGG + chr4_2:61691439-61691458 Msa0613090:five_prime_UTR 60.0%
! AGCACCGGGTGCGTAGGATT+AGG + chr4_2:61691445-61691464 Msa0613090:five_prime_UTR 60.0%
GGCTCCTAATCCTACGCACC+CGG - chr4_2:61691452-61691471 None:intergenic 60.0%
GGTGGAGCTGTTATCCGGCA+CGG + chr4_2:61691577-61691596 Msa0613090:CDS 60.0%
ACCAATCACCAGTGCCGTGC+CGG - chr4_2:61691594-61691613 None:intergenic 60.0%
! TGGTGATTGGTCCGTCGTCG+CGG + chr4_2:61691603-61691622 Msa0613090:CDS 60.0%
TGTGACGTGGGGGACATGGG+AGG + chr4_2:61691543-61691562 Msa0613090:CDS 65.0%
GCTGTTATCCGGCACGGCAC+TGG + chr4_2:61691583-61691602 Msa0613090:CDS 65.0%
!! TCCGGCACGGCACTGGTGAT+TGG + chr4_2:61691590-61691609 Msa0613090:CDS 65.0%
! TGATTGGTCCGTCGTCGCGG+CGG + chr4_2:61691606-61691625 Msa0613090:CDS 65.0%
CGAGGCAGGATCGCTGCCAT+CGG - chr4_2:61695801-61695820 None:intergenic 65.0%
CGATGGCAGCGATCCTGCCT+CGG + chr4_2:61695799-61695818 Msa0613090:CDS 65.0%
GATGGCAGCGATCCTGCCTC+GGG + chr4_2:61695800-61695819 Msa0613090:CDS 65.0%
ATGGCAGCGATCCTGCCTCG+GGG + chr4_2:61695801-61695820 Msa0613090:CDS 65.0%
TGGCAGCGATCCTGCCTCGG+GGG + chr4_2:61695802-61695821 Msa0613090:CDS 70.0%
TCGGAGCTCCGCCGCGACGA+CGG - chr4_2:61691617-61691636 None:intergenic 75.0%
TCGTCGCGGCGGAGCTCCGA+GGG + chr4_2:61691617-61691636 Msa0613090:CDS 75.0%
! GTCGTCGCGGCGGAGCTCCG+AGG + chr4_2:61691616-61691635 Msa0613090:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 61690955 61696161 61690955 ID=Msa0613090;Name=Msa0613090
chr4_2 mRNA 61690955 61696161 61690955 ID=Msa0613090-mRNA-1;Parent=Msa0613090;Name=Msa0613090-mRNA-1;_AED=0.09;_eAED=0.09;_QI=571|1|1|1|1|1|5|164|557
chr4_2 exon 61690955 61691672 61690955 ID=Msa0613090-mRNA-1:exon:16844;Parent=Msa0613090-mRNA-1
chr4_2 exon 61693360 61693409 61693360 ID=Msa0613090-mRNA-1:exon:16845;Parent=Msa0613090-mRNA-1
chr4_2 exon 61693608 61693685 61693608 ID=Msa0613090-mRNA-1:exon:16846;Parent=Msa0613090-mRNA-1
chr4_2 exon 61693941 61694817 61693941 ID=Msa0613090-mRNA-1:exon:16847;Parent=Msa0613090-mRNA-1
chr4_2 exon 61695476 61696161 61695476 ID=Msa0613090-mRNA-1:exon:16848;Parent=Msa0613090-mRNA-1
chr4_2 five_prime_UTR 61690955 61691525 61690955 ID=Msa0613090-mRNA-1:five_prime_utr;Parent=Msa0613090-mRNA-1
chr4_2 CDS 61691526 61691672 61691526 ID=Msa0613090-mRNA-1:cds;Parent=Msa0613090-mRNA-1
chr4_2 CDS 61693360 61693409 61693360 ID=Msa0613090-mRNA-1:cds;Parent=Msa0613090-mRNA-1
chr4_2 CDS 61693608 61693685 61693608 ID=Msa0613090-mRNA-1:cds;Parent=Msa0613090-mRNA-1
chr4_2 CDS 61693941 61694817 61693941 ID=Msa0613090-mRNA-1:cds;Parent=Msa0613090-mRNA-1
chr4_2 CDS 61695476 61695997 61695476 ID=Msa0613090-mRNA-1:cds;Parent=Msa0613090-mRNA-1
chr4_2 three_prime_UTR 61695998 61696161 61695998 ID=Msa0613090-mRNA-1:three_prime_utr;Parent=Msa0613090-mRNA-1
Gene Sequence

>Msa0613090

ATGGGAGCGGAAGTGATTGTGACGTGGGGGACATGGGAGGAGCTTCTTCTTGGTGGAGCTGTTATCCGGCACGGCACTGGTGATTGGTCCGTCGTCGCGGCGGAGCTCCGAGGGAGAACTCCTTCTCCTTCCGCTATTACACCCGAGGTCTGTAAAGCCAAATATGAAGAATTGCAACAGCGCTATTCAGGCTGCACGGCTTGGTATGAGGAGCTTAAGAAGAGAAGAGTAGCAGAGCTTAAGCGAGCTTTGGAGAAATCAGAAGATTCAATTGGGTCTCTTGAATCAAAGCTTGAATCCCTCAAGGCTGACAAGAATGAGAAAATAGATGATTGTCTTGTTGACAACAACTCAGTTGGACCAGAATTAGATGTTCCTTCACAGAAATTAGAGAGAGTTGAATCTTCTACTAAAGAGTTGTCAAAGGATGGGCTATCTGCTGGGAGTTTTACACATCAAACCGATACAAACTGGTCTCATGAATGCCAGGTTCCAGCAATGTCTTCTGAAGACATGGAGATCTCGCCTGGTGTTTCAGGGTCTATTGAACATGAGAAAGTTTTGAATATAGATAAGTTGACAGATACAGCTGGGAAAAGAGATGATTGTCATGTTGACAACGACTCAGTTGAACCAGAATCACATGTTCCTTCACAGAAATTGGAGAGAGTTGAATCTTCAACTAAAGAGACGTCAAAGGATGGGTTATCTGCTGGTAGTTTTACACATCAAACCCAGAAAAACTGGTCTCAAGAATGCCAAGTTCCAGCAATGTCTTCTGAAGACATGGAGATTACGCCTGGTGTTTCAGGGTCAACCGAACATGAGAAAGTTTTGAATGTAGATAAGTTGACAGAGACTGTATATGAAGGACATGGAGGGTGTTTTAAAAAAAGGAGAGGAAAGAGAAAGAGGAAGGATTGTGCCAGAAATATTAATGAAGCGAGTGTGAGAGAAAGTGATTTTTCAATTGATGTGTCCCGGCTGAAAGAAAGTTCTACCAGCAACTGTGGTGAGGTTATCAAATCTTCTGGTGTAACTGAGGAGAACACGAACTTGAAAAAGGATGAAACGAAAGATCTGATGGCGATTTTAGATTCTGTTTTGGAAATTAAAGGTGCTTCTTGCTTCTGTCGCAAGCATGATAGCCAGAAGCGACAAAGGTACAAGCAGTTAATCCAGAGACACATGGACTTTGACACTATAAGGTCAAGAATTAGCAACAAAACAATTGATTCAGTGGTGCAACTTTTCAGAGACATGTTTCTATTGACCACCAATGCTTTGCTGTTCTACTCCAAGAACACCCGTCAATATAAGTCTGCACTACTCATGAGAGATATTGTCAAAGAAAAACTGACGGAGAACAGGAGGAATGTCATACATTCTAATGTCGACATTGTCTGCGCTACTCCTTCTTTGAAAGTCCCAAGTGTCCGCCCTTGTAACCAGAAGATTAATGTTGCAAAGGTAGCCGATGGCAGCGATCCTGCCTCGGGGGTCTCAAATAAAGCCAAGAAGCCTAGTAGTGGTGGTAGCAAAGAGAATTCTCCGTCTTCGGTGAAATCCTTACACATCAAGAAAGCTGTCGGTGGATCTAAAAAACATGAACCTGCAACTCCGAATCTTATGAAGGAAATGAAGGAAAAGAAAAGACGGAGAACTAGGTTATGA
Protein sequence

>Msa0613090

MGAEVIVTWGTWEELLLGGAVIRHGTGDWSVVAAELRGRTPSPSAITPEVCKAKYEELQQRYSGCTAWYEELKKRRVAELKRALEKSEDSIGSLESKLESLKADKNEKIDDCLVDNNSVGPELDVPSQKLERVESSTKELSKDGLSAGSFTHQTDTNWSHECQVPAMSSEDMEISPGVSGSIEHEKVLNIDKLTDTAGKRDDCHVDNDSVEPESHVPSQKLERVESSTKETSKDGLSAGSFTHQTQKNWSQECQVPAMSSEDMEITPGVSGSTEHEKVLNVDKLTETVYEGHGGCFKKRRGKRKRKDCARNINEASVRESDFSIDVSRLKESSTSNCGEVIKSSGVTEENTNLKKDETKDLMAILDSVLEIKGASCFCRKHDSQKRQRYKQLIQRHMDFDTIRSRISNKTIDSVVQLFRDMFLLTTNALLFYSKNTRQYKSALLMRDIVKEKLTENRRNVIHSNVDIVCATPSLKVPSVRPCNQKINVAKVADGSDPASGVSNKAKKPSSGGSKENSPSSVKSLHIKKAVGGSKKHEPATPNLMKEMKEKKRRRTRL*