AlfalfaGEDB | Msa0559210

M. sativa cultivar zhongmu-4 / Msa0559210

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0559210	XP_024637268.1	76.452	620	132	5	1	614	23	634	0.0	963

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0559210	sp\|Q9ASS4\|Y5838_ARATH	37.959	627	308	14	28	612	30	617	3.60e-131	401

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0559210	A0A396IAH3	76.452	620	132	5	1	614	23	634	0.0	963

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0141270	Msa0559210	0.826047	3.361156e-54	-8.615850e-47
Msa0432300	Msa0559210	0.809660	1.695152e-50	-8.615850e-47
Msa0559160	Msa0559210	0.800262	1.565279e-48	-8.615850e-47
Msa0559190	Msa0559210	0.804158	2.470719e-49	-8.615850e-47
Msa0559210	Msa0559240	0.815019	1.145228e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0559210	MtrunA17_Chr4g0049181	76.452	620	132	5	1	614	23	634	0.0	963
Msa0559210	MtrunA17_Chr4g0049161	88.673	309	35	0	306	614	5	313	0.0	577
Msa0559210	MtrunA17_Chr4g0049201	71.722	389	103	3	218	606	51	432	0.0	542
Msa0559210	MtrunA17_Chr4g0049201	53.846	65	22	1	1	65	1	57	2.12e-12	69.7
Msa0559210	MtrunA17_Chr7g0249841	43.101	587	262	10	25	578	28	575	5.30e-157	464
Msa0559210	MtrunA17_Chr8g0337671	44.020	602	266	12	10	577	14	578	8.62e-156	461
Msa0559210	MtrunA17_Chr4g0049171	83.607	244	39	1	41	283	35	278	6.59e-139	405
Msa0559210	MtrunA17_Chr6g0452221	33.119	622	339	13	10	595	9	589	1.94e-96	307
Msa0559210	MtrunA17_Chr4g0049211	49.084	273	113	6	325	582	9	270	6.52e-74	238
Msa0559210	MtrunA17_Chr5g0423761	39.806	412	209	13	217	609	6	397	6.71e-71	234

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0559210	AT5G48380.1	37.959	627	308	14	28	612	30	617	3.66e-132	401
Msa0559210	AT3G28450.1	35.131	612	335	15	11	595	16	592	5.05e-103	325
Msa0559210	AT1G69990.1	32.670	603	321	14	19	583	11	566	3.36e-94	301
Msa0559210	AT1G27190.1	33.731	587	329	11	26	583	24	579	2.18e-89	289
Msa0559210	AT5G45780.1	29.744	585	337	12	20	576	30	568	5.03e-65	224
Msa0559210	AT5G07280.1	32.369	553	317	13	53	576	661	1185	1.66e-64	230
Msa0559210	AT5G07280.1	38.835	103	62	1	86	188	460	561	3.46e-14	76.6
Msa0559210	AT5G07280.1	41.748	103	59	1	86	188	592	693	8.85e-14	75.5
Msa0559210	AT5G45780.2	30.000	570	325	12	35	576	2	525	1.79e-62	217
Msa0559210	AT1G55610.1	29.924	528	304	16	104	593	645	1144	1.83e-60	218

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Find 131 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTGAATACACTCAC+AGG	0.622565	4_1:+58383089	None:intergenic
AAAATATAGTTCCCCTGCTT+GGG	0.403731	4_1:-58383620	Msa0559210:CDS
AAAATCCATTAAGAATTCAT+TGG	0.408659	4_1:-58384816	Msa0559210:CDS
AAAATGGGAATGATGTACCA+AGG	0.671877	4_1:-58383750	Msa0559210:CDS
AAATCTCAAACTATCTAACA+TGG	0.542747	4_1:-58384684	Msa0559210:CDS
AAATTCACATATGAAACCTT+CGG	0.454562	4_1:+58384748	None:intergenic
AAATTTGGCCTCTCCAAAAT+TGG	0.218462	4_1:+58383353	None:intergenic
AACTTCAACAACAAAACCGA+AGG	0.603796	4_1:-58384764	Msa0559210:CDS
AACTTCAGGAAAGGACCAAA+TGG	0.505381	4_1:-58383021	Msa0559210:CDS
AAGAAGGATGTCTACGACTT+TGG	0.316828	4_1:-58383276	Msa0559210:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCTTCCAATGAATTCTTAA+TGG	+	chr4_1:58383048-58383067	None:intergenic	30.0%
CTCTCTGGTAATAAATTTAC+TGG	-	chr4_1:58383329-58383348	Msa0559210:CDS	30.0%
GCTAATAATGATGAACTTTG+TGG	-	chr4_1:58383536-58383555	Msa0559210:CDS	30.0%
AATAATGATGAACTTTGTGG+AGG	-	chr4_1:58383539-58383558	Msa0559210:CDS	30.0%
AAGTTCCATCAAGCATTAAA+GGG	-	chr4_1:58383590-58383609	Msa0559210:CDS	30.0%
ATAATGCAAAACCAACAATG+AGG	+	chr4_1:58383619-58383638	None:intergenic	30.0%
CCTAAATAAAGCTAAAGAGT+TGG	-	chr4_1:58383733-58383752	Msa0559210:CDS	30.0%
TGCAAATAGTTACAACTTAG+AGG	-	chr4_1:58383929-58383948	Msa0559210:intron	30.0%
GTGAAGTCATAAGATTGAAA+TGG	-	chr4_1:58384344-58384363	Msa0559210:CDS	30.0%
CCTAAATGATCTTCAATGTT+GGG	+	chr4_1:58384535-58384554	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	58382942	58384936	58382942	ID=Msa0559210;Name=Msa0559210
chr4_1	mRNA	58382942	58384936	58382942	ID=Msa0559210-mRNA-1;Parent=Msa0559210;Name=Msa0559210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|1\|0\|1\|1\|1\|2\|0\|614
chr4_1	exon	58384022	58384936	58384022	ID=Msa0559210-mRNA-1:exon:17770;Parent=Msa0559210-mRNA-1
chr4_1	exon	58382942	58383871	58382942	ID=Msa0559210-mRNA-1:exon:17769;Parent=Msa0559210-mRNA-1
chr4_1	CDS	58384022	58384936	58384022	ID=Msa0559210-mRNA-1:cds;Parent=Msa0559210-mRNA-1
chr4_1	CDS	58382942	58383871	58382942	ID=Msa0559210-mRNA-1:cds;Parent=Msa0559210-mRNA-1

Gene Sequence

>Msa0559210

ATGGCTTTTGAAATGGAAAGGGATACTCTATTCGAAATATTCTTGTGCCTCGGTATGTTAATGACTAGTCAGGGTACCGATACTGATATCTTCTGTTTAAAATCCATTAAGAATTCATTGGAAGACCCAAATAATTTCTTAGAAAACTGGAACTTCAACAACAAAACCGAAGGTTTCATATGTGAATTTAAAGGTGTCGAATGCTGGCATCCAGATGAGAATAAAGTACTAAATCTCAAACTATCTAACATGGGATTGAAGGGTCAGTTTCCACGTGGTCTTGAAAACTGCTCCTCAATTACAGGCGTAGACCTTTCAATCAACAAGCTATCGGGATTCATCCCATCTGATATATCAAGTATACTTTCGTATGTTACCAGCATTGATCTCTCTGGTAATAAATTTACTGGTGAAATTCCAATAGATTTTACAAATTGCACTTACCTGAATACTCTTAAGCTTGATGGTAACATGTTAAGCGGTCATATCCCAAAAGAATTTGCCATGCTTAACAGGCTTAAAGTGATTACTTTTTCTAATAATAATTTGTCAGGGGCAGTACCGATGTTCCAAAGAGTAGTAGTTTATAATTATGCTAATAATGATGAACTTTGTGGAGGAGTGTCTTTGGCCCCTTGCTCCGTTGGCAAGTTCCATCAAGCATTAAAGGGTGGCCTCATTGTTGGTTTTGCATTATCATTCACTTCTTATATTGTGGTTACTTTTTACATCTCCTACTCCAACGGTGTACCTCGCATGCAATCAAAGAAGAAGAGGAATAGAAACAGCCTCCTAAATAAAGCTAAAGAGTTGGGCAAATATATTTATTCCATCACAAGCAAGACGACACAAAGGATATCTAATTATATGCACGAACTGCTACATCCACAGTTGGTGGAGAAAGGAAGCAAAGGGATCTCTATACTAATTGAGAGACTGACTTCAACAATATGGTTGGAAGAACTGCGTGACGCAACCGATTGTTTCGCTGTGGACAATGCCATTGGGGTAGGAAAAATGGGAATGATGTACCAAGGATTTCTGCCTAATGGTCAATTACTAGCTGTTAAGAGACTATTTGACTCTCGCCTCTTTAAAAGGCAGTTCCTTTTAGAAACAGCAATTTTGTGCAAGTACAGACACAAAAATATAGTTCCCCTGCTTGGGTTCTGCATTGAAGGAAATGAAAGGCTCTTGGCATACGCATACATGTCAAATGGAAGGCTTTCCAAATGGTTGCATCCTTTGGAAAGTGAAGTCATAAGATTGAAATGGCATGACAGGGTCAACATTGCACTTGGAATAGCAAGAGGGTTATCATGGCTACATCATACATGCGATTTGGGCATAGTGCATTTTAATATATGTTCAGAATGCATATTGCTAGATGAGAATTTTGAACCAAAAATATCCAATTTTGGAGAGGCCAAATTTATGAATCCCAACATTGAAGATCATTTAGGAACAATGTTTAAAGTGAATGACGGGAAGAAGGATGTCTACGACTTTGGAAGTGTGCTTTTTGAATTGATGACAGGGAAAACATATATTGAATTGTCGCGTTCATCTGACACTACTAATCTATGCGGTAACCCTTTGAATTTTTATAATGTTATTGATAAATCTTTGATCGGGGAAGGACTTGAAAATGAAGTTTGTACTCTCATCAATATTGCCTGTGAGTGTATTCACCCTTTTGCAGGCCAAAGGCCAACAATGCTTGATGTTTACAACAATATGAGCAACTTCAGGAAAGGACCAAATGGTTCTAGTGATGATTCTGACACATTAAGGAGATTAGAATATGCTTCTTCTATTACTATAGATGAAATTGTTGAGTTTTAA

Protein sequence

>Msa0559210

MAFEMERDTLFEIFLCLGMLMTSQGTDTDIFCLKSIKNSLEDPNNFLENWNFNNKTEGFICEFKGVECWHPDENKVLNLKLSNMGLKGQFPRGLENCSSITGVDLSINKLSGFIPSDISSILSYVTSIDLSGNKFTGEIPIDFTNCTYLNTLKLDGNMLSGHIPKEFAMLNRLKVITFSNNNLSGAVPMFQRVVVYNYANNDELCGGVSLAPCSVGKFHQALKGGLIVGFALSFTSYIVVTFYISYSNGVPRMQSKKKRNRNSLLNKAKELGKYIYSITSKTTQRISNYMHELLHPQLVEKGSKGISILIERLTSTIWLEELRDATDCFAVDNAIGVGKMGMMYQGFLPNGQLLAVKRLFDSRLFKRQFLLETAILCKYRHKNIVPLLGFCIEGNERLLAYAYMSNGRLSKWLHPLESEVIRLKWHDRVNIALGIARGLSWLHHTCDLGIVHFNICSECILLDENFEPKISNFGEAKFMNPNIEDHLGTMFKVNDGKKDVYDFGSVLFELMTGKTYIELSRSSDTTNLCGNPLNFYNVIDKSLIGEGLENEVCTLINIACECIHPFAGQRPTMLDVYNNMSNFRKGPNGSSDDSDTLRRLEYASSITIDEIVEF*