Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559820 | XP_003608402.1 | 94.311 | 334 | 18 | 1 | 1 | 333 | 1 | 334 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559820 | sp|Q8H1G0|GAT28_ARATH | 59.043 | 188 | 69 | 3 | 40 | 220 | 80 | 266 | 1.42e-60 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559820 | G7JV51 | 94.311 | 334 | 18 | 1 | 1 | 333 | 1 | 334 | 0.0 | 654 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0559820 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0559820 | Msa0638910 | 0.879589 | 1.101435e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559820 | MtrunA17_Chr4g0049741 | 94.311 | 334 | 18 | 1 | 1 | 333 | 1 | 334 | 0.0 | 654 |
| Msa0559820 | MtrunA17_Chr3g0132751 | 46.512 | 301 | 132 | 8 | 40 | 318 | 66 | 359 | 5.82e-76 | 237 |
| Msa0559820 | MtrunA17_Chr3g0132761 | 44.697 | 264 | 132 | 7 | 5 | 268 | 33 | 282 | 9.06e-57 | 186 |
| Msa0559820 | MtrunA17_Chr5g0427661 | 55.191 | 183 | 65 | 7 | 43 | 219 | 74 | 245 | 1.20e-55 | 182 |
| Msa0559820 | MtrunA17_Chr4g0002231 | 48.387 | 93 | 41 | 2 | 126 | 211 | 43 | 135 | 2.72e-20 | 85.9 |
| Msa0559820 | MtrunA17_Chr3g0102511 | 47.115 | 104 | 40 | 6 | 140 | 235 | 11 | 107 | 8.15e-17 | 81.3 |
| Msa0559820 | MtrunA17_Chr3g0091641 | 63.830 | 47 | 17 | 0 | 103 | 149 | 493 | 539 | 1.46e-12 | 68.6 |
| Msa0559820 | MtrunA17_Chr4g0002251 | 52.727 | 55 | 18 | 1 | 177 | 231 | 9 | 55 | 1.60e-12 | 62.4 |
| Msa0559820 | MtrunA17_Chr4g0061021 | 64.444 | 45 | 16 | 0 | 104 | 148 | 501 | 545 | 8.18e-12 | 66.2 |
| Msa0559820 | MtrunA17_Chr4g0002261 | 72.093 | 43 | 11 | 1 | 108 | 149 | 24 | 66 | 8.20e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559820 | AT1G51600.1 | 59.043 | 188 | 69 | 3 | 40 | 220 | 80 | 266 | 1.45e-61 | 199 |
| Msa0559820 | AT1G51600.2 | 59.043 | 188 | 69 | 3 | 40 | 220 | 80 | 266 | 1.45e-61 | 199 |
| Msa0559820 | AT3G21175.2 | 55.440 | 193 | 70 | 5 | 38 | 220 | 74 | 260 | 3.43e-60 | 195 |
| Msa0559820 | AT3G21175.1 | 54.922 | 193 | 73 | 4 | 38 | 220 | 74 | 262 | 3.92e-60 | 195 |
| Msa0559820 | AT4G24470.1 | 46.977 | 215 | 97 | 6 | 19 | 230 | 63 | 263 | 5.87e-50 | 169 |
| Msa0559820 | AT4G24470.2 | 46.977 | 215 | 97 | 6 | 19 | 230 | 63 | 263 | 5.87e-50 | 169 |
| Msa0559820 | AT4G24470.3 | 46.977 | 215 | 97 | 6 | 19 | 230 | 63 | 263 | 6.51e-50 | 169 |
| Msa0559820 | AT3G21175.3 | 57.018 | 114 | 46 | 2 | 38 | 151 | 74 | 184 | 5.71e-33 | 122 |
Find 95 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTATAGACAAACTATTTC+TGG | 0.191039 | 4_1:-59000029 | Msa0559820:three_prime_UTR |
| TTTGAAACTCACATGGATTC+TGG | 0.211139 | 4_1:+59002689 | None:intergenic |
| CGGGCTCATGTGGGCAAATA+AGG | 0.235102 | 4_1:-59002468 | Msa0559820:intron |
| CAAGCATTGCATAGAGTTCT+TGG | 0.242885 | 4_1:+59002491 | None:intergenic |
| TTCAACTAACTCTAGACTTT+TGG | 0.255714 | 4_1:-59000064 | Msa0559820:three_prime_UTR |
| ACCTCTCAGCAAGCTCTTTA+CGG | 0.268811 | 4_1:+59003299 | None:intergenic |
| AGGATTACAGGATAATATTA+TGG | 0.274171 | 4_1:-59000341 | Msa0559820:intron |
| ACTGAATTTGAGATTCCTTT+AGG | 0.291144 | 4_1:-59000295 | Msa0559820:CDS |
| AGCAAAACTGTCGGGACATT+TGG | 0.300350 | 4_1:-59003533 | Msa0559820:CDS |
| TCCGTGAAAGCTTTGAATTA+CGG | 0.336575 | 4_1:+59003395 | None:intergenic |
| TTGGCAAAGGCTTTGTTTCA+TGG | 0.339952 | 4_1:+59001477 | None:intergenic |
| GCTGTATTGTTACTCTTAGA+TGG | 0.341296 | 4_1:-59003600 | Msa0559820:CDS |
| GGAGATCTGCATCACTTGTT+AGG | 0.347795 | 4_1:-59003375 | Msa0559820:CDS |
| GAACTCTATGCAATGCTTGC+GGG | 0.368924 | 4_1:-59002487 | Msa0559820:CDS |
| TTGAAACTCACATGGATTCT+GGG | 0.372841 | 4_1:+59002690 | None:intergenic |
| ATTCCAATATGAGGACTTAC+TGG | 0.374469 | 4_1:-59000159 | Msa0559820:CDS |
| TGGAAACAAATTTGCGGCTC+TGG | 0.382542 | 4_1:-59000087 | Msa0559820:three_prime_UTR |
| TGGCAAAGGCTTTGTTTCAT+GGG | 0.392126 | 4_1:+59001478 | None:intergenic |
| GCAATGCTTGCGGGCTCATG+TGG | 0.395096 | 4_1:-59002478 | Msa0559820:CDS |
| GCCGGTCCTCGACGCATTAC+CGG | 0.398091 | 4_1:+59002518 | None:intergenic |
| GCAAAACTGTCGGGACATTT+GGG | 0.401442 | 4_1:-59003532 | Msa0559820:intron |
| CAAAATTAAATCCGGTTACA+TGG | 0.403929 | 4_1:+58999941 | None:intergenic |
| GAACTCACCATTTCCTTTGA+AGG | 0.410545 | 4_1:-59004027 | Msa0559820:CDS |
| AGATGCCAGCATTGTGGAAT+TGG | 0.421996 | 4_1:-59002554 | Msa0559820:CDS |
| ACACTATACAAAATTAAATC+CGG | 0.426016 | 4_1:+58999933 | None:intergenic |
| CCCTTCCGTTACGCCAGAAA+AGG | 0.437686 | 4_1:-59003989 | Msa0559820:intron |
| AGAAAATTCATGTGCTGCAC+AGG | 0.441655 | 4_1:-59001658 | Msa0559820:CDS |
| ACCTGCTCAATTATCATCTC+AGG | 0.443550 | 4_1:+59001437 | None:intergenic |
| TATCATCTCAGGTGACTGTC+TGG | 0.447979 | 4_1:+59001448 | None:intergenic |
| CAAGAGCATTATTCTCCACT+TGG | 0.451852 | 4_1:+59000523 | None:intergenic |
| CAGCCAGTAAGTCCTCATAT+TGG | 0.453388 | 4_1:+59000156 | None:intergenic |
| GAGTGGAACAGAAGCGGTAA+TGG | 0.454383 | 4_1:+59004062 | None:intergenic |
| TCCGTAATTCAAAGCTTTCA+CGG | 0.456528 | 4_1:-59003396 | Msa0559820:CDS |
| ATGCTGAATTCGTCTGAGAA+TGG | 0.460337 | 4_1:-59004147 | Msa0559820:CDS |
| TGCTGAATTCGTCTGAGAAT+GGG | 0.470907 | 4_1:-59004146 | Msa0559820:CDS |
| AATAGGATGCAACGGAAGAA+TGG | 0.473196 | 4_1:-59002785 | Msa0559820:intron |
| GGCAAAGGCTTTGTTTCATG+GGG | 0.473835 | 4_1:+59001479 | None:intergenic |
| AACCTCGCCTTCAAAGGAAA+TGG | 0.478631 | 4_1:+59004020 | None:intergenic |
| CAGTTCTCCTGCTGAAAACC+AGG | 0.478700 | 4_1:-59002735 | Msa0559820:CDS |
| AGTGGAACAGAAGCGGTAAT+GGG | 0.481649 | 4_1:+59004063 | None:intergenic |
| ATTGTTACTCTTAGATGGGC+AGG | 0.482284 | 4_1:-59003595 | Msa0559820:CDS |
| ACCTGAGATGATAATTGAGC+AGG | 0.486485 | 4_1:-59001438 | Msa0559820:intron |
| TGCTCTTGATCTGCACGAGC+AGG | 0.491928 | 4_1:-59000508 | Msa0559820:intron |
| ACAGAAGCGGTAATGGGTTG+AGG | 0.500608 | 4_1:+59004069 | None:intergenic |
| TTGCACCAATTCCACAATGC+TGG | 0.502619 | 4_1:+59002549 | None:intergenic |
| CTGAGAGATCTCGGCAAAGC+AGG | 0.503407 | 4_1:-59002166 | Msa0559820:CDS |
| GAGTACTGTTGCTAGAATCC+TGG | 0.505753 | 4_1:+59002717 | None:intergenic |
| TTCGGTGCAGCAAAACTGTC+GGG | 0.506228 | 4_1:-59003541 | Msa0559820:CDS |
| TGGACAGTTTGCATCATTGA+AGG | 0.506543 | 4_1:-59002765 | Msa0559820:CDS |
| GCTCTTTACGGCAAGTGTAC+CGG | 0.507579 | 4_1:+59003311 | None:intergenic |
| AACATAAACCTCGCCTTCAA+AGG | 0.517160 | 4_1:+59004014 | None:intergenic |
| TCCGGTAATGCGTCGAGGAC+CGG | 0.522308 | 4_1:-59002519 | Msa0559820:CDS |
| GGTGACTGTCTGGCATCCAT+TGG | 0.523909 | 4_1:+59001458 | None:intergenic |
| CACCATTTCCTTTGAAGGCG+AGG | 0.528900 | 4_1:-59004022 | Msa0559820:CDS |
| CTGTATTGTTACTCTTAGAT+GGG | 0.529102 | 4_1:-59003599 | Msa0559820:CDS |
| ACCTGATCATCAAAACCTAA+AGG | 0.529543 | 4_1:+59000280 | None:intergenic |
| TCGTGGTGGAAACAAATTTG+CGG | 0.534321 | 4_1:-59000093 | Msa0559820:three_prime_UTR |
| TTCGTCTGAGAATGGGTCAA+TGG | 0.534504 | 4_1:-59004139 | Msa0559820:CDS |
| AGCATTATTCTCCACTTGGA+TGG | 0.538269 | 4_1:+59000527 | None:intergenic |
| AAAGCTTTGAATTACGGAAA+GGG | 0.538823 | 4_1:+59003401 | None:intergenic |
| ATATTGATGATTCCAATATG+AGG | 0.538934 | 4_1:-59000168 | Msa0559820:CDS |
| ACCGAGGCATGGTTTGTTCG+TGG | 0.556171 | 4_1:-59000110 | Msa0559820:three_prime_UTR |
| AGCTACATTGGTACAGTGCA+TGG | 0.556675 | 4_1:+59004116 | None:intergenic |
| CATAGAGTTCTTGGACCAGC+CGG | 0.557209 | 4_1:+59002500 | None:intergenic |
| AAGGGAACACTGAGAGATCT+CGG | 0.561679 | 4_1:-59002175 | Msa0559820:CDS |
| GAAAGCTTTGAATTACGGAA+AGG | 0.561743 | 4_1:+59003400 | None:intergenic |
| TTTCGGTGCAGCAAAACTGT+CGG | 0.562482 | 4_1:-59003542 | Msa0559820:CDS |
| TGAAACAAAGCCTTTGCCAA+TGG | 0.564941 | 4_1:-59001474 | Msa0559820:CDS |
| AAAATTAAATCCGGTTACAT+GGG | 0.565035 | 4_1:+58999942 | None:intergenic |
| GTCAGAAACGGAAGCTACAT+TGG | 0.567531 | 4_1:+59004104 | None:intergenic |
| ACTCACATGGATTCTGGGAA+AGG | 0.570438 | 4_1:+59002695 | None:intergenic |
| GTAGCTTCCGTTTCTGACGA+AGG | 0.576494 | 4_1:-59004099 | Msa0559820:CDS |
| GTAATGCGTCGAGGACCGGC+TGG | 0.578356 | 4_1:-59002515 | Msa0559820:CDS |
| ATTACAGGATAATATTATGG+AGG | 0.581083 | 4_1:-59000338 | Msa0559820:intron |
| CTGCACCGAAAAGTCAGAAG+TGG | 0.584625 | 4_1:+59003554 | None:intergenic |
| ATTGGTGTGCGACCGAGGCA+TGG | 0.584867 | 4_1:-59000121 | Msa0559820:three_prime_UTR |
| AGAACTCTATGCAATGCTTG+CGG | 0.585395 | 4_1:-59002488 | Msa0559820:CDS |
| ATGTGCTGCACAGGACAAGA+AGG | 0.588693 | 4_1:-59001649 | Msa0559820:intron |
| TGTCTGGCATCCATTGGCAA+AGG | 0.604496 | 4_1:+59001464 | None:intergenic |
| AAGACATTGGTGTGCGACCG+AGG | 0.606997 | 4_1:-59000126 | Msa0559820:three_prime_UTR |
| TGATAACTTGTCCATCCAAG+TGG | 0.607711 | 4_1:-59000538 | Msa0559820:CDS |
| ACCACGAACAAACCATGCCT+CGG | 0.611054 | 4_1:+59000109 | None:intergenic |
| AGTTCACTAGCACGAGAGAG+TGG | 0.611323 | 4_1:+59004045 | None:intergenic |
| GAACGTAGATGCCAGCATTG+TGG | 0.619610 | 4_1:-59002560 | Msa0559820:CDS |
| CAATGCTTGCGGGCTCATGT+GGG | 0.620002 | 4_1:-59002477 | Msa0559820:CDS |
| GCAAAGGCTTTGTTTCATGG+GGG | 0.623713 | 4_1:+59001480 | None:intergenic |
| ATTCATCTAATAGGATGCAA+CGG | 0.631265 | 4_1:-59002793 | Msa0559820:intron |
| ACGAGAGAGTGGAACAGAAG+CGG | 0.632477 | 4_1:+59004056 | None:intergenic |
| GAGGCATGGTTTGTTCGTGG+TGG | 0.639652 | 4_1:-59000107 | Msa0559820:three_prime_UTR |
| GAGATCTCGGCAAAGCAGGA+AGG | 0.645047 | 4_1:-59002162 | Msa0559820:CDS |
| AATTGGTGCAAAGTCTACTC+CGG | 0.650622 | 4_1:-59002537 | Msa0559820:CDS |
| TGGCTGTGATCTAAAGACAT+TGG | 0.657189 | 4_1:-59000139 | Msa0559820:exon |
| TGCACCGAAAAGTCAGAAGT+GGG | 0.670616 | 4_1:+59003555 | None:intergenic |
| TCTACTCCGGTAATGCGTCG+AGG | 0.699165 | 4_1:-59002524 | Msa0559820:CDS |
| GCCGTAAAGAGCTTGCTGAG+AGG | 0.703271 | 4_1:-59003300 | Msa0559820:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAATTTTCAAAATTTATT+TGG | + | chr4_1:59000197-59000216 | None:intergenic | 10.0% |
| !!! | TCTTCTTTTATATTATAAAT+TGG | - | chr4_1:59000868-59000887 | Msa0559820:intron | 10.0% |
| !! | TTTAAAAGGAAAAAAAAAAA+AGG | + | chr4_1:59000948-59000967 | None:intergenic | 10.0% |
| !!! | TTTTTTCCTTTTAAATTATT+TGG | - | chr4_1:59000953-59000972 | Msa0559820:intron | 10.0% |
| !!! | ATAGTATTACTTTTATTTTT+AGG | - | chr4_1:59002371-59002390 | Msa0559820:intron | 10.0% |
| !!! | TTTTGATCATGTTTATTATT+TGG | - | chr4_1:59000362-59000381 | Msa0559820:intron | 15.0% |
| !!! | TTTTATATTATAAATTGGTC+TGG | - | chr4_1:59000873-59000892 | Msa0559820:intron | 15.0% |
| !! | TTTAAGCCAAATAATTTAAA+AGG | + | chr4_1:59000962-59000981 | None:intergenic | 15.0% |
| !! | ATGAAATTAATTCATCTAAT+AGG | - | chr4_1:59001266-59001285 | Msa0559820:intron | 15.0% |
| !! | TGAATAACATATTATATTCT+TGG | + | chr4_1:59002014-59002033 | None:intergenic | 15.0% |
| !! | TTTCAAAATTTATTTGGCTA+TGG | + | chr4_1:59000191-59000210 | None:intergenic | 20.0% |
| !!! | CATGTTTATTATTTGGATTT+TGG | - | chr4_1:59000369-59000388 | Msa0559820:intron | 20.0% |
| !! | TTTCAAAATAACTCTTCATT+CGG | - | chr4_1:59000566-59000585 | Msa0559820:CDS | 20.0% |
| !! | TAAAATTTATGATGTTTACC+AGG | - | chr4_1:59000634-59000653 | Msa0559820:intron | 20.0% |
| !! | AAAATTTATGATGTTTACCA+GGG | - | chr4_1:59000635-59000654 | Msa0559820:intron | 20.0% |
| !!! | TTATGAGCTAATTTAAGATT+GGG | - | chr4_1:59000988-59001007 | Msa0559820:intron | 20.0% |
| !! | ATATTACAAATAACCAAGAT+AGG | + | chr4_1:59001110-59001129 | None:intergenic | 20.0% |
| !! | CATTTGTTTGAAAGTTAAAA+TGG | - | chr4_1:59001409-59001428 | Msa0559820:intron | 20.0% |
| !!! | TTACCTTTTAGTCTTAATAT+TGG | - | chr4_1:59001440-59001459 | Msa0559820:CDS | 20.0% |
| !! | AAAGAAATCATACAAAAATG+AGG | + | chr4_1:59001720-59001739 | None:intergenic | 20.0% |
| !! | TAAGACTGATAAAAGATAAA+GGG | + | chr4_1:59002546-59002565 | None:intergenic | 20.0% |
| !! | ATAAGACTGATAAAAGATAA+AGG | + | chr4_1:59002547-59002566 | None:intergenic | 20.0% |
| !! | TATTTATTTGTTTGTATTCG+TGG | - | chr4_1:59002660-59002679 | Msa0559820:intron | 20.0% |
| !! | TAGAAAATGTAATTACTACA+TGG | + | chr4_1:59002859-59002878 | None:intergenic | 20.0% |
| !!! | TGTAGTAATTACATTTTCTA+TGG | - | chr4_1:59002859-59002878 | Msa0559820:intron | 20.0% |
| !! | TAATTAAGTTTGATATGACA+GGG | + | chr4_1:59002895-59002914 | None:intergenic | 20.0% |
| !! | ATAATTAAGTTTGATATGAC+AGG | + | chr4_1:59002896-59002915 | None:intergenic | 20.0% |
| !! | TAAGAATTAAGTAAATGAAG+CGG | - | chr4_1:59002919-59002938 | Msa0559820:intron | 20.0% |
| !!! | TAATAGTTTTGTCAAGTTTT+TGG | - | chr4_1:59003051-59003070 | Msa0559820:intron | 20.0% |
| !! | ATGTTCGGATAAAAAAATTT+AGG | + | chr4_1:59003131-59003150 | None:intergenic | 20.0% |
| !! | CAATAAAATGACATTATGTT+CGG | + | chr4_1:59003146-59003165 | None:intergenic | 20.0% |
| !!! | TGTCATTTTATTGAACATTT+TGG | - | chr4_1:59003153-59003172 | Msa0559820:intron | 20.0% |
| !! | TAAGAATTTAGTAAATGAAG+CGG | - | chr4_1:59003211-59003230 | Msa0559820:intron | 20.0% |
| !!! | TAATAGTTTTGTCAAGTTTT+TGG | - | chr4_1:59003051-59003070 | Msa0559820:intron | 20.0% |
| !! | ATGTTCGGATAAAAAAATTT+AGG | + | chr4_1:59003131-59003150 | None:intergenic | 20.0% |
| !! | CAATAAAATGACATTATGTT+CGG | + | chr4_1:59003146-59003165 | None:intergenic | 20.0% |
| !!! | TGTCATTTTATTGAACATTT+TGG | - | chr4_1:59003153-59003172 | Msa0559820:intron | 20.0% |
| !! | ACAAAGTAAATGATAGATAA+AGG | + | chr4_1:59003839-59003858 | None:intergenic | 20.0% |
| !! | ACACTATACAAAATTAAATC+CGG | + | chr4_1:59004138-59004157 | None:intergenic | 20.0% |
| !! | GTAAAAAATTGAACCTTTTC+TGG | + | chr4_1:59000095-59000114 | None:intergenic | 25.0% |
| ! | AAAAACTTCAATTGAACGAT+GGG | + | chr4_1:59000134-59000153 | None:intergenic | 25.0% |
| ! | AAAAAACTTCAATTGAACGA+TGG | + | chr4_1:59000135-59000154 | None:intergenic | 25.0% |
| ! | ACTCTATGCAATAAAGTTTA+AGG | - | chr4_1:59000238-59000257 | Msa0559820:intron | 25.0% |
| !! | TATGCAATAAAGTTTAAGGT+TGG | - | chr4_1:59000242-59000261 | Msa0559820:intron | 25.0% |
| ! | TTGGATTAAGTTTCAAATAG+TGG | - | chr4_1:59000261-59000280 | Msa0559820:intron | 25.0% |
| ! | TGGATTAAGTTTCAAATAGT+GGG | - | chr4_1:59000262-59000281 | Msa0559820:intron | 25.0% |
| !! | ACCATTCTTGTGATTTTTAA+AGG | - | chr4_1:59000402-59000421 | Msa0559820:intron | 25.0% |
| !! | TCCTTTAAAAATCACAAGAA+TGG | + | chr4_1:59000406-59000425 | None:intergenic | 25.0% |
| ! | AAATTTATGATGTTTACCAG+GGG | - | chr4_1:59000636-59000655 | Msa0559820:intron | 25.0% |
| ! | TGTGAAACAACAATATCAAT+AGG | + | chr4_1:59000845-59000864 | None:intergenic | 25.0% |
| !!! | GACAAATCTACAATTTTTTC+GGG | + | chr4_1:59000926-59000945 | None:intergenic | 25.0% |
| !!! | GGACAAATCTACAATTTTTT+CGG | + | chr4_1:59000927-59000946 | None:intergenic | 25.0% |
| !! | CTTATGAGCTAATTTAAGAT+TGG | - | chr4_1:59000987-59001006 | Msa0559820:intron | 25.0% |
| !! | AATGGAAGCATATTTAAAGA+GGG | + | chr4_1:59001073-59001092 | None:intergenic | 25.0% |
| !! | AAATGGAAGCATATTTAAAG+AGG | + | chr4_1:59001074-59001093 | None:intergenic | 25.0% |
| !!! | TAGGCTTTATTCAACTTAAA+TGG | + | chr4_1:59001091-59001110 | None:intergenic | 25.0% |
| !!! | ATATAACTTTGAAACTCACA+TGG | + | chr4_1:59001389-59001408 | None:intergenic | 25.0% |
| !!! | TCTTAATATTGGTGCTAATA+CGG | - | chr4_1:59001451-59001470 | Msa0559820:CDS | 25.0% |
| !! | GAAATTTGATGATATTACAG+AGG | + | chr4_1:59001787-59001806 | None:intergenic | 25.0% |
| !! | TTCATTTTGCATATTTTCAC+TGG | - | chr4_1:59001961-59001980 | Msa0559820:intron | 25.0% |
| !! | ATTCTTGGTTACTTTATAAC+AGG | + | chr4_1:59001999-59002018 | None:intergenic | 25.0% |
| !!! | TAATTTGCATTGGATTTTGA+GGG | + | chr4_1:59002263-59002282 | None:intergenic | 25.0% |
| !!! | ACAAAAGTGTCATTAATTTG+CGG | + | chr4_1:59002464-59002483 | None:intergenic | 25.0% |
| !! | TTATTGAGAATGCAAGTTTT+TGG | - | chr4_1:59002975-59002994 | Msa0559820:intron | 25.0% |
| ! | ACTATTATCATTATCCACAT+GGG | + | chr4_1:59003038-59003057 | None:intergenic | 25.0% |
| ! | AACTATTATCATTATCCACA+TGG | + | chr4_1:59003039-59003058 | None:intergenic | 25.0% |
| !!! | GCGTGCATAATTTTTTAATT+TGG | - | chr4_1:59003073-59003092 | Msa0559820:intron | 25.0% |
| !! | TATTGAACATTTTGGATCTT+CGG | - | chr4_1:59003161-59003180 | Msa0559820:intron | 25.0% |
| !! | TTATTGAGAATGCAAGTTTT+TGG | - | chr4_1:59002975-59002994 | Msa0559820:intron | 25.0% |
| ! | ACTATTATCATTATCCACAT+GGG | + | chr4_1:59003038-59003057 | None:intergenic | 25.0% |
| ! | AACTATTATCATTATCCACA+TGG | + | chr4_1:59003039-59003058 | None:intergenic | 25.0% |
| !!! | GCGTGCATAATTTTTTAATT+TGG | - | chr4_1:59003073-59003092 | Msa0559820:intron | 25.0% |
| !! | AACATTTTGGATGAACATTT+TGG | - | chr4_1:59003458-59003477 | Msa0559820:intron | 25.0% |
| ! | AGGATTACAGGATAATATTA+TGG | - | chr4_1:59003727-59003746 | Msa0559820:intron | 25.0% |
| ! | ATTACAGGATAATATTATGG+AGG | - | chr4_1:59003730-59003749 | Msa0559820:intron | 25.0% |
| !! | ATATTGATGATTCCAATATG+AGG | - | chr4_1:59003900-59003919 | Msa0559820:intron | 25.0% |
| ! | GTTTATAGACAAACTATTTC+TGG | - | chr4_1:59004039-59004058 | Msa0559820:CDS | 25.0% |
| ! | AAAATTAAATCCGGTTACAT+GGG | + | chr4_1:59004129-59004148 | None:intergenic | 25.0% |
| AAAACTTCAATTGAACGATG+GGG | + | chr4_1:59000133-59000152 | None:intergenic | 30.0% | |
| CTGTATTGTTACTCTTAGAT+GGG | - | chr4_1:59000469-59000488 | Msa0559820:intron | 30.0% | |
| !! | AAAGCTTTGAATTACGGAAA+GGG | + | chr4_1:59000670-59000689 | None:intergenic | 30.0% |
| !!! | GATGTTTTGAGAAGAAAATC+CGG | - | chr4_1:59000738-59000757 | Msa0559820:intron | 30.0% |
| ATAGGAAAACATTATATGCC+AGG | + | chr4_1:59000827-59000846 | None:intergenic | 30.0% | |
| AAGTTGAATAAAGCCTATCT+TGG | - | chr4_1:59001094-59001113 | Msa0559820:intron | 30.0% | |
| ATTCATCTAATAGGATGCAA+CGG | - | chr4_1:59001275-59001294 | Msa0559820:intron | 30.0% | |
| GCACCAATATTAAGACTAAA+AGG | + | chr4_1:59001446-59001465 | None:intergenic | 30.0% | |
| ! | TCTTTATGTTAGCTTAGCAT+AGG | - | chr4_1:59001632-59001651 | Msa0559820:intron | 30.0% |
| TATGTTATTCATTCCGCATT+CGG | - | chr4_1:59002023-59002042 | Msa0559820:intron | 30.0% | |
| !! | CTATTTGCTACCTTTTTGTT+TGG | - | chr4_1:59002229-59002248 | Msa0559820:intron | 30.0% |
| !! | CTAATTTGCATTGGATTTTG+AGG | + | chr4_1:59002264-59002283 | None:intergenic | 30.0% |
| ! | GATTACACTCTAATTTGCAT+TGG | + | chr4_1:59002273-59002292 | None:intergenic | 30.0% |
| ! | CATGAAATTTGAAGCATCTT+TGG | + | chr4_1:59002347-59002366 | None:intergenic | 30.0% |
| !!! | ACCTTATTTTCTTGTGACAT+TGG | - | chr4_1:59002514-59002533 | Msa0559820:CDS | 30.0% |
| ACCAATGTCACAAGAAAATA+AGG | + | chr4_1:59002518-59002537 | None:intergenic | 30.0% | |
| !! | TCTTATGTGTTTTTATCCTC+AGG | - | chr4_1:59002561-59002580 | Msa0559820:CDS | 30.0% |
| ! | AAGAAACTAAAATTAGCCTC+AGG | - | chr4_1:59002709-59002728 | Msa0559820:CDS | 30.0% |
| GCATTCTCAATAACATGAAT+TGG | + | chr4_1:59002968-59002987 | None:intergenic | 30.0% | |
| CTATTATCATTATCCACATG+GGG | + | chr4_1:59003037-59003056 | None:intergenic | 30.0% | |
| GCATTCTCAATAACATGAAT+TGG | + | chr4_1:59002968-59002987 | None:intergenic | 30.0% | |
| CTATTATCATTATCCACATG+GGG | + | chr4_1:59003037-59003056 | None:intergenic | 30.0% | |
| TGAAAACAGTTCGAGTATTA+GGG | - | chr4_1:59003672-59003691 | Msa0559820:intron | 30.0% | |
| ! | ACTGAATTTGAGATTCCTTT+AGG | - | chr4_1:59003773-59003792 | Msa0559820:intron | 30.0% |
| ! | TTCAACTAACTCTAGACTTT+TGG | - | chr4_1:59004004-59004023 | Msa0559820:CDS | 30.0% |
| !!! | TGAAGATTTTTAAGTCGCTA+CGG | + | chr4_1:59004085-59004104 | None:intergenic | 30.0% |
| CAAAATTAAATCCGGTTACA+TGG | + | chr4_1:59004130-59004149 | None:intergenic | 30.0% | |
| ! | TTTTTCACCTTCGTCAGAAA+CGG | + | chr4_1:58999979-58999998 | None:intergenic | 35.0% |
| AAACTTCAATTGAACGATGG+GGG | + | chr4_1:59000132-59000151 | None:intergenic | 35.0% | |
| !!! | ATAGTGGGTTTTCTACAATG+TGG | - | chr4_1:59000277-59000296 | Msa0559820:intron | 35.0% |
| ACCTGCATTTCATTACAAAG+GGG | + | chr4_1:59000444-59000463 | None:intergenic | 35.0% | |
| CACCTGCATTTCATTACAAA+GGG | + | chr4_1:59000445-59000464 | None:intergenic | 35.0% | |
| GCTGTATTGTTACTCTTAGA+TGG | - | chr4_1:59000468-59000487 | Msa0559820:intron | 35.0% | |
| !! | GAAAGCTTTGAATTACGGAA+AGG | + | chr4_1:59000671-59000690 | None:intergenic | 35.0% |
| TCCGTAATTCAAAGCTTTCA+CGG | - | chr4_1:59000672-59000691 | Msa0559820:intron | 35.0% | |
| !! | TCCGTGAAAGCTTTGAATTA+CGG | + | chr4_1:59000676-59000695 | None:intergenic | 35.0% |
| ! | TCTAGGGTTGTTATGATCTT+TGG | - | chr4_1:59000796-59000815 | Msa0559820:intron | 35.0% |
| ! | TTTAAGATTGGGCAAGTAGT+TGG | - | chr4_1:59000999-59001018 | Msa0559820:intron | 35.0% |
| TTAGACACTAACATGTTCTG+CGG | - | chr4_1:59001213-59001232 | Msa0559820:intron | 35.0% | |
| TTGAAACTCACATGGATTCT+GGG | + | chr4_1:59001381-59001400 | None:intergenic | 35.0% | |
| ! | TTTGAAACTCACATGGATTC+TGG | + | chr4_1:59001382-59001401 | None:intergenic | 35.0% |
| CATCTACGTTCACTTAAGAA+TGG | + | chr4_1:59001499-59001518 | None:intergenic | 35.0% | |
| CATGATTTAACACCTAGTTC+TGG | + | chr4_1:59001697-59001716 | None:intergenic | 35.0% | |
| TATTTACCAACTAGAACCCA+TGG | - | chr4_1:59001742-59001761 | Msa0559820:intron | 35.0% | |
| ! | TGCTTTTGAACAGAATGAAC+TGG | - | chr4_1:59001931-59001950 | Msa0559820:intron | 35.0% |
| TTAAAGTGTAATGCCGAATG+CGG | + | chr4_1:59002039-59002058 | None:intergenic | 35.0% | |
| ACATCCAGGTTACATGAAAA+CGG | + | chr4_1:59002097-59002116 | None:intergenic | 35.0% | |
| ! | TTTTCATGTAACCTGGATGT+TGG | - | chr4_1:59002097-59002116 | Msa0559820:intron | 35.0% |
| ! | GATGCAACACTAGAGAATTT+TGG | - | chr4_1:59002153-59002172 | Msa0559820:CDS | 35.0% |
| !! | ACACTAGAGAATTTTGGCAT+AGG | - | chr4_1:59002159-59002178 | Msa0559820:CDS | 35.0% |
| GGCAAGTAATCCAAACAAAA+AGG | + | chr4_1:59002242-59002261 | None:intergenic | 35.0% | |
| ATTAGAGTGTAATCCGTTAG+TGG | - | chr4_1:59002279-59002298 | Msa0559820:intron | 35.0% | |
| TCAAGAAAGAAACCTCAAAC+TGG | + | chr4_1:59002308-59002327 | None:intergenic | 35.0% | |
| ! | ATTTGACTTATCTGCTCACA+TGG | - | chr4_1:59002745-59002764 | Msa0559820:CDS | 35.0% |
| ! | TTTGACTTATCTGCTCACAT+GGG | - | chr4_1:59002746-59002765 | Msa0559820:CDS | 35.0% |
| ! | ATGAATTGGTCTCAATTTGC+TGG | + | chr4_1:59002954-59002973 | None:intergenic | 35.0% |
| ! | ATGAATTGGTCTCAATTTGC+TGG | + | chr4_1:59002954-59002973 | None:intergenic | 35.0% |
| ! | GGATGAACATTTTGGATCTT+CGG | - | chr4_1:59003466-59003485 | Msa0559820:intron | 35.0% |
| CTGAAAACAGTTCGAGTATT+AGG | - | chr4_1:59003671-59003690 | Msa0559820:intron | 35.0% | |
| ! | TTAGGGCATTATTTGAGATC+TGG | - | chr4_1:59003689-59003708 | Msa0559820:intron | 35.0% |
| ! | TCTGGTATGTTACACTTTTG+AGG | - | chr4_1:59003707-59003726 | Msa0559820:intron | 35.0% |
| !! | GTTACACTTTTGAGGATTAC+AGG | - | chr4_1:59003715-59003734 | Msa0559820:intron | 35.0% |
| !! | TCCTTTAGGTTTTGATGATC+AGG | - | chr4_1:59003787-59003806 | Msa0559820:intron | 35.0% |
| ACCTGATCATCAAAACCTAA+AGG | + | chr4_1:59003791-59003810 | None:intergenic | 35.0% | |
| ! | ATGAGTTCTGACATACATAC+AGG | - | chr4_1:59003874-59003893 | Msa0559820:intron | 35.0% |
| ATTCCAATATGAGGACTTAC+TGG | - | chr4_1:59003909-59003928 | Msa0559820:intron | 35.0% | |
| !! | TAACTCTAGACTTTTGGAGA+TGG | - | chr4_1:59004010-59004029 | Msa0559820:CDS | 35.0% |
| !! | AGACTTTTGGAGATGGTTTA+TGG | - | chr4_1:59004017-59004036 | Msa0559820:CDS | 35.0% |
| ! | TTTTGTACATCCCATGTAAC+CGG | - | chr4_1:59004116-59004135 | Msa0559820:CDS | 35.0% |
| ATGCTGAATTCGTCTGAGAA+TGG | - | chr4_1:58999921-58999940 | Msa0559820:three_prime_UTR | 40.0% | |
| TGCTGAATTCGTCTGAGAAT+GGG | - | chr4_1:58999922-58999941 | Msa0559820:three_prime_UTR | 40.0% | |
| GAACTCACCATTTCCTTTGA+AGG | - | chr4_1:59000041-59000060 | Msa0559820:three_prime_UTR | 40.0% | |
| AACATAAACCTCGCCTTCAA+AGG | + | chr4_1:59000057-59000076 | None:intergenic | 40.0% | |
| !! | TTGAACCTTTTCTGGCGTAA+CGG | + | chr4_1:59000087-59000106 | None:intergenic | 40.0% |
| CATTACAAAGGGGTGATCAA+AGG | + | chr4_1:59000434-59000453 | None:intergenic | 40.0% | |
| ACCCCTTTGTAATGAAATGC+AGG | - | chr4_1:59000440-59000459 | Msa0559820:intron | 40.0% | |
| GCACCTGCATTTCATTACAA+AGG | + | chr4_1:59000446-59000465 | None:intergenic | 40.0% | |
| TTGTAATGAAATGCAGGTGC+AGG | - | chr4_1:59000446-59000465 | Msa0559820:intron | 40.0% | |
| ATTGTTACTCTTAGATGGGC+AGG | - | chr4_1:59000473-59000492 | Msa0559820:intron | 40.0% | |
| CTCTTCATTCGGACATGTAT+TGG | - | chr4_1:59000577-59000596 | Msa0559820:intron | 40.0% | |
| ATATTTAAAGAGGGAGGCAG+GGG | + | chr4_1:59001064-59001083 | None:intergenic | 40.0% | |
| CATATTTAAAGAGGGAGGCA+GGG | + | chr4_1:59001065-59001084 | None:intergenic | 40.0% | |
| ! | GGAAGCATATTTAAAGAGGG+AGG | + | chr4_1:59001070-59001089 | None:intergenic | 40.0% |
| TGCACGACATTAGAATATGC+TGG | - | chr4_1:59001161-59001180 | Msa0559820:intron | 40.0% | |
| AATAGGATGCAACGGAAGAA+TGG | - | chr4_1:59001283-59001302 | Msa0559820:intron | 40.0% | |
| TGGACAGTTTGCATCATTGA+AGG | - | chr4_1:59001303-59001322 | Msa0559820:intron | 40.0% | |
| TACGTTCACTTAAGAATGGC+AGG | + | chr4_1:59001495-59001514 | None:intergenic | 40.0% | |
| AATTGGTGCAAAGTCTACTC+CGG | - | chr4_1:59001531-59001550 | Msa0559820:intron | 40.0% | |
| ! | CAAGCATTGCATAGAGTTCT+TGG | + | chr4_1:59001580-59001599 | None:intergenic | 40.0% |
| AGAACTCTATGCAATGCTTG+CGG | - | chr4_1:59001580-59001599 | Msa0559820:intron | 40.0% | |
| ! | TTTAAGCCATGGGTTCTAGT+TGG | + | chr4_1:59001751-59001770 | None:intergenic | 40.0% |
| AAAGCTCCTGTTTAAGCCAT+GGG | + | chr4_1:59001761-59001780 | None:intergenic | 40.0% | |
| AAAAGCTCCTGTTTAAGCCA+TGG | + | chr4_1:59001762-59001781 | None:intergenic | 40.0% | |
| AAGATTTCCCAAGTCACTTC+AGG | + | chr4_1:59001824-59001843 | None:intergenic | 40.0% | |
| TGCGAAAGTAGGTCAGTAAT+TGG | + | chr4_1:59001858-59001877 | None:intergenic | 40.0% | |
| ATTACTGACCTACTTTCGCA+TGG | - | chr4_1:59001858-59001877 | Msa0559820:intron | 40.0% | |
| GCATGGTCTGTTGATATGAA+GGG | - | chr4_1:59001875-59001894 | Msa0559820:intron | 40.0% | |
| GGTTACATGAAAACGGAACT+GGG | + | chr4_1:59002090-59002109 | None:intergenic | 40.0% | |
| AGGTTACATGAAAACGGAAC+TGG | + | chr4_1:59002091-59002110 | None:intergenic | 40.0% | |
| ! | AGTTCCGTTTTCATGTAACC+TGG | - | chr4_1:59002090-59002109 | Msa0559820:intron | 40.0% |
| ! | TCTCAAGTTGTCACATCACA+TGG | - | chr4_1:59002124-59002143 | Msa0559820:intron | 40.0% |
| AAGCATCTTTGGTTGAGAAC+AGG | + | chr4_1:59002336-59002355 | None:intergenic | 40.0% | |
| ! | TGTGCAGCACATGAATTTTC+TGG | + | chr4_1:59002411-59002430 | None:intergenic | 40.0% |
| AGAAAATTCATGTGCTGCAC+AGG | - | chr4_1:59002410-59002429 | Msa0559820:intron | 40.0% | |
| !! | TGGCAAAGGCTTTGTTTCAT+GGG | + | chr4_1:59002593-59002612 | None:intergenic | 40.0% |
| !! | TTGGCAAAGGCTTTGTTTCA+TGG | + | chr4_1:59002594-59002613 | None:intergenic | 40.0% |
| TGAAACAAAGCCTTTGCCAA+TGG | - | chr4_1:59002594-59002613 | Msa0559820:intron | 40.0% | |
| ACCTGAGATGATAATTGAGC+AGG | - | chr4_1:59002630-59002649 | Msa0559820:intron | 40.0% | |
| ACCTGCTCAATTATCATCTC+AGG | + | chr4_1:59002634-59002653 | None:intergenic | 40.0% | |
| AATTTCCTCATGATAGCCTG+AGG | + | chr4_1:59002728-59002747 | None:intergenic | 40.0% | |
| !! | ATTGGTCTCAATTTGCTGGA+GGG | + | chr4_1:59002950-59002969 | None:intergenic | 40.0% |
| !! | AATTGGTCTCAATTTGCTGG+AGG | + | chr4_1:59002951-59002970 | None:intergenic | 40.0% |
| !! | ATTGGTCTCAATTTGCTGGA+GGG | + | chr4_1:59002950-59002969 | None:intergenic | 40.0% |
| !! | AATTGGTCTCAATTTGCTGG+AGG | + | chr4_1:59002951-59002970 | None:intergenic | 40.0% |
| ! | TGATAACTTGTCCATCCAAG+TGG | - | chr4_1:59003530-59003549 | Msa0559820:intron | 40.0% |
| AGCATTATTCTCCACTTGGA+TGG | + | chr4_1:59003544-59003563 | None:intergenic | 40.0% | |
| !! | CAAGAGCATTATTCTCCACT+TGG | + | chr4_1:59003548-59003567 | None:intergenic | 40.0% |
| GACTTCCTACTCTTCAAATG+AGG | - | chr4_1:59003603-59003622 | Msa0559820:CDS | 40.0% | |
| GGATACCTCATTTGAAGAGT+AGG | + | chr4_1:59003611-59003630 | None:intergenic | 40.0% | |
| ! | AAATGAGGTATCCTTCTGAG+AGG | - | chr4_1:59003618-59003637 | Msa0559820:intron | 40.0% |
| ! | AATGAGGTATCCTTCTGAGA+GGG | - | chr4_1:59003619-59003638 | Msa0559820:intron | 40.0% |
| AGAGGGGAAAGTCATGAAAA+GGG | - | chr4_1:59003636-59003655 | Msa0559820:intron | 40.0% | |
| GAAAGTCATGAAAAGGGTTG+AGG | - | chr4_1:59003642-59003661 | Msa0559820:intron | 40.0% | |
| ! | AGGATTTTGCTGATGCATCT+GGG | - | chr4_1:59003750-59003769 | Msa0559820:intron | 40.0% |
| CTAGCATTAGCAAGATTGGA+TGG | + | chr4_1:59003816-59003835 | None:intergenic | 40.0% | |
| AAGGCTAGCATTAGCAAGAT+TGG | + | chr4_1:59003820-59003839 | None:intergenic | 40.0% | |
| TGGCTGTGATCTAAAGACAT+TGG | - | chr4_1:59003929-59003948 | Msa0559820:intron | 40.0% | |
| ! | TCGTGGTGGAAACAAATTTG+CGG | - | chr4_1:59003975-59003994 | Msa0559820:intron | 40.0% |
| TTCGTCTGAGAATGGGTCAA+TGG | - | chr4_1:58999929-58999948 | Msa0559820:three_prime_UTR | 45.0% | |
| AGCTACATTGGTACAGTGCA+TGG | + | chr4_1:58999955-58999974 | None:intergenic | 45.0% | |
| GTCAGAAACGGAAGCTACAT+TGG | + | chr4_1:58999967-58999986 | None:intergenic | 45.0% | |
| AGTGGAACAGAAGCGGTAAT+GGG | + | chr4_1:59000008-59000027 | None:intergenic | 45.0% | |
| AACCTCGCCTTCAAAGGAAA+TGG | + | chr4_1:59000051-59000070 | None:intergenic | 45.0% | |
| ! | CGTACCCACTTCTGACTTTT+CGG | - | chr4_1:59000509-59000528 | Msa0559820:CDS | 45.0% |
| TGCACCGAAAAGTCAGAAGT+GGG | + | chr4_1:59000516-59000535 | None:intergenic | 45.0% | |
| ! | TTTCGGTGCAGCAAAACTGT+CGG | - | chr4_1:59000526-59000545 | Msa0559820:CDS | 45.0% |
| AGCAAAACTGTCGGGACATT+TGG | - | chr4_1:59000535-59000554 | Msa0559820:CDS | 45.0% | |
| GCAAAACTGTCGGGACATTT+GGG | - | chr4_1:59000536-59000555 | Msa0559820:CDS | 45.0% | |
| GGAGATCTGCATCACTTGTT+AGG | - | chr4_1:59000693-59000712 | Msa0559820:intron | 45.0% | |
| ACCTCTCAGCAAGCTCTTTA+CGG | + | chr4_1:59000772-59000791 | None:intergenic | 45.0% | |
| TTGCTGAGAGGTAGAGTCTA+GGG | - | chr4_1:59000780-59000799 | Msa0559820:intron | 45.0% | |
| ! | TTATGATCTTTGGTGCAGCC+TGG | - | chr4_1:59000806-59000825 | Msa0559820:intron | 45.0% |
| TATTTAAAGAGGGAGGCAGG+GGG | + | chr4_1:59001063-59001082 | None:intergenic | 45.0% | |
| GCATATTTAAAGAGGGAGGC+AGG | + | chr4_1:59001066-59001085 | None:intergenic | 45.0% | |
| !! | CTAGAATCCTGGTTTTCAGC+AGG | + | chr4_1:59001343-59001362 | None:intergenic | 45.0% |
| ! | GAGTACTGTTGCTAGAATCC+TGG | + | chr4_1:59001354-59001373 | None:intergenic | 45.0% |
| ! | ACTCACATGGATTCTGGGAA+AGG | + | chr4_1:59001376-59001395 | None:intergenic | 45.0% |
| AGATGCCAGCATTGTGGAAT+TGG | - | chr4_1:59001514-59001533 | Msa0559820:intron | 45.0% | |
| TTGCACCAATTCCACAATGC+TGG | + | chr4_1:59001522-59001541 | None:intergenic | 45.0% | |
| GAACTCTATGCAATGCTTGC+GGG | - | chr4_1:59001581-59001600 | Msa0559820:intron | 45.0% | |
| AAGTTCTGCACTCCAGAACT+AGG | - | chr4_1:59001682-59001701 | Msa0559820:intron | 45.0% | |
| CTAGAACCCATGGCTTAAAC+AGG | - | chr4_1:59001752-59001771 | Msa0559820:intron | 45.0% | |
| CAAGTCACTTCAGGCAAGAT+GGG | + | chr4_1:59001815-59001834 | None:intergenic | 45.0% | |
| CATCTTGCCTGAAGTGACTT+GGG | - | chr4_1:59001814-59001833 | Msa0559820:intron | 45.0% | |
| TCAACAGACCATGCGAAAGT+AGG | + | chr4_1:59001869-59001888 | None:intergenic | 45.0% | |
| CGCATGGTCTGTTGATATGA+AGG | - | chr4_1:59001874-59001893 | Msa0559820:intron | 45.0% | |
| AAGGGAACACTGAGAGATCT+CGG | - | chr4_1:59001893-59001912 | Msa0559820:intron | 45.0% | |
| CTTGAGAAGATCCAACATCC+AGG | + | chr4_1:59002111-59002130 | None:intergenic | 45.0% | |
| CTCAAACTGGTGACCACTAA+CGG | + | chr4_1:59002295-59002314 | None:intergenic | 45.0% | |
| !! | GCAAAGGCTTTGTTTCATGG+GGG | + | chr4_1:59002591-59002610 | None:intergenic | 45.0% |
| !! | GGCAAAGGCTTTGTTTCATG+GGG | + | chr4_1:59002592-59002611 | None:intergenic | 45.0% |
| TATCATCTCAGGTGACTGTC+TGG | + | chr4_1:59002623-59002642 | None:intergenic | 45.0% | |
| ! | ATTAGCCTCAGGCTATCATG+AGG | - | chr4_1:59002720-59002739 | Msa0559820:CDS | 45.0% |
| TTAGTGTCTTTAGCCCCATG+TGG | - | chr4_1:59003021-59003040 | Msa0559820:intron | 45.0% | |
| TTAGTGTCTTTAGCCCCATG+TGG | - | chr4_1:59003021-59003040 | Msa0559820:intron | 45.0% | |
| ! | ATGAGGTATCCTTCTGAGAG+GGG | - | chr4_1:59003620-59003639 | Msa0559820:intron | 45.0% |
| GAGAGGGGAAAGTCATGAAA+AGG | - | chr4_1:59003635-59003654 | Msa0559820:intron | 45.0% | |
| ! | GAGGATTTTGCTGATGCATC+TGG | - | chr4_1:59003749-59003768 | Msa0559820:intron | 45.0% |
| CAGCCAGTAAGTCCTCATAT+TGG | + | chr4_1:59003915-59003934 | None:intergenic | 45.0% | |
| TGGAAACAAATTTGCGGCTC+TGG | - | chr4_1:59003981-59004000 | Msa0559820:intron | 45.0% | |
| GTAGCTTCCGTTTCTGACGA+AGG | - | chr4_1:58999969-58999988 | Msa0559820:three_prime_UTR | 50.0% | |
| !! | ACAGAAGCGGTAATGGGTTG+AGG | + | chr4_1:59000002-59000021 | None:intergenic | 50.0% |
| GAGTGGAACAGAAGCGGTAA+TGG | + | chr4_1:59000009-59000028 | None:intergenic | 50.0% | |
| ACGAGAGAGTGGAACAGAAG+CGG | + | chr4_1:59000015-59000034 | None:intergenic | 50.0% | |
| AGTTCACTAGCACGAGAGAG+TGG | + | chr4_1:59000026-59000045 | None:intergenic | 50.0% | |
| ! | CACCATTTCCTTTGAAGGCG+AGG | - | chr4_1:59000046-59000065 | Msa0559820:three_prime_UTR | 50.0% |
| !! | CCTTTTCTGGCGTAACGGAA+GGG | + | chr4_1:59000082-59000101 | None:intergenic | 50.0% |
| !! | ACCTTTTCTGGCGTAACGGA+AGG | + | chr4_1:59000083-59000102 | None:intergenic | 50.0% |
| CTGCACCGAAAAGTCAGAAG+TGG | + | chr4_1:59000517-59000536 | None:intergenic | 50.0% | |
| ! | TTCGGTGCAGCAAAACTGTC+GGG | - | chr4_1:59000527-59000546 | Msa0559820:CDS | 50.0% |
| !!! | GGAAAGGGTCATTTTTCCCC+TGG | + | chr4_1:59000655-59000674 | None:intergenic | 50.0% |
| GCTCTTTACGGCAAGTGTAC+CGG | + | chr4_1:59000760-59000779 | None:intergenic | 50.0% | |
| CTTGCTGAGAGGTAGAGTCT+AGG | - | chr4_1:59000779-59000798 | Msa0559820:intron | 50.0% | |
| CAAGCTTTCACGTGAAGACG+TGG | + | chr4_1:59001037-59001056 | None:intergenic | 50.0% | |
| TCTGCGGATCTTCTCGACTT+TGG | - | chr4_1:59001229-59001248 | Msa0559820:intron | 50.0% | |
| CAGTTCTCCTGCTGAAAACC+AGG | - | chr4_1:59001333-59001352 | Msa0559820:intron | 50.0% | |
| GAACGTAGATGCCAGCATTG+TGG | - | chr4_1:59001508-59001527 | Msa0559820:intron | 50.0% | |
| CATAGAGTTCTTGGACCAGC+CGG | + | chr4_1:59001571-59001590 | None:intergenic | 50.0% | |
| CCAAGTCACTTCAGGCAAGA+TGG | + | chr4_1:59001816-59001835 | None:intergenic | 50.0% | |
| CCATCTTGCCTGAAGTGACT+TGG | - | chr4_1:59001813-59001832 | Msa0559820:intron | 50.0% | |
| CGTTAGTGGTCACCAGTTTG+AGG | - | chr4_1:59002293-59002312 | Msa0559820:intron | 50.0% | |
| ATGTGCTGCACAGGACAAGA+AGG | - | chr4_1:59002419-59002438 | Msa0559820:intron | 50.0% | |
| TGTCTGGCATCCATTGGCAA+AGG | + | chr4_1:59002607-59002626 | None:intergenic | 50.0% | |
| CATGACTTTCCCCTCTCAGA+AGG | + | chr4_1:59003632-59003651 | None:intergenic | 50.0% | |
| ACCACGAACAAACCATGCCT+CGG | + | chr4_1:59003962-59003981 | None:intergenic | 50.0% | |
| CCCTTCCGTTACGCCAGAAA+AGG | - | chr4_1:59000079-59000098 | Msa0559820:three_prime_UTR | 55.0% | |
| !! | GCCGTAAAGAGCTTGCTGAG+AGG | - | chr4_1:59000768-59000787 | Msa0559820:intron | 55.0% |
| CACGTGAAGACGTGGCACAA+AGG | + | chr4_1:59001029-59001048 | None:intergenic | 55.0% | |
| TCTACTCCGGTAATGCGTCG+AGG | - | chr4_1:59001544-59001563 | Msa0559820:intron | 55.0% | |
| CAATGCTTGCGGGCTCATGT+GGG | - | chr4_1:59001591-59001610 | Msa0559820:intron | 55.0% | |
| CGGGCTCATGTGGGCAAATA+AGG | - | chr4_1:59001600-59001619 | Msa0559820:intron | 55.0% | |
| CTGAGAGATCTCGGCAAAGC+AGG | - | chr4_1:59001902-59001921 | Msa0559820:intron | 55.0% | |
| GAGATCTCGGCAAAGCAGGA+AGG | - | chr4_1:59001906-59001925 | Msa0559820:intron | 55.0% | |
| GTTTCATGGGGGCTTTCCTG+AGG | + | chr4_1:59002580-59002599 | None:intergenic | 55.0% | |
| GGTGACTGTCTGGCATCCAT+TGG | + | chr4_1:59002613-59002632 | None:intergenic | 55.0% | |
| TGCTCTTGATCTGCACGAGC+AGG | - | chr4_1:59003560-59003579 | Msa0559820:CDS | 55.0% | |
| AAGACATTGGTGTGCGACCG+AGG | - | chr4_1:59003942-59003961 | Msa0559820:intron | 55.0% | |
| !! | ACCGAGGCATGGTTTGTTCG+TGG | - | chr4_1:59003958-59003977 | Msa0559820:intron | 55.0% |
| !! | GAGGCATGGTTTGTTCGTGG+TGG | - | chr4_1:59003961-59003980 | Msa0559820:intron | 55.0% |
| TTAAAGAGGGAGGCAGGGGG+AGG | + | chr4_1:59001060-59001079 | None:intergenic | 60.0% | |
| TCCGGTAATGCGTCGAGGAC+CGG | - | chr4_1:59001549-59001568 | Msa0559820:intron | 60.0% | |
| GCAATGCTTGCGGGCTCATG+TGG | - | chr4_1:59001590-59001609 | Msa0559820:intron | 60.0% | |
| ATTGGTGTGCGACCGAGGCA+TGG | - | chr4_1:59003947-59003966 | Msa0559820:intron | 60.0% | |
| GCCGGTCCTCGACGCATTAC+CGG | + | chr4_1:59001553-59001572 | None:intergenic | 65.0% | |
| GTAATGCGTCGAGGACCGGC+TGG | - | chr4_1:59001553-59001572 | Msa0559820:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 58999915 | 59004175 | 58999915 | ID=Msa0559820;Name=Msa0559820 |
| chr4_1 | mRNA | 58999915 | 59004175 | 58999915 | ID=Msa0559820-mRNA-1;Parent=Msa0559820;Name=Msa0559820-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.9|0.63|1|1|1|11|238|333 |
| chr4_1 | exon | 58999915 | 59000194 | 58999915 | ID=Msa0559820-mRNA-1:exon:18180;Parent=Msa0559820-mRNA-1 |
| chr4_1 | exon | 59000282 | 59000353 | 59000282 | ID=Msa0559820-mRNA-1:exon:18179;Parent=Msa0559820-mRNA-1 |
| chr4_1 | exon | 59000509 | 59000589 | 59000509 | ID=Msa0559820-mRNA-1:exon:18178;Parent=Msa0559820-mRNA-1 |
| chr4_1 | exon | 59001439 | 59001507 | 59001439 | ID=Msa0559820-mRNA-1:exon:18177;Parent=Msa0559820-mRNA-1 |
| chr4_1 | exon | 59001650 | 59001697 | 59001650 | ID=Msa0559820-mRNA-1:exon:18176;Parent=Msa0559820-mRNA-1 |
| chr4_1 | exon | 59002138 | 59002194 | 59002138 | ID=Msa0559820-mRNA-1:exon:18175;Parent=Msa0559820-mRNA-1 |
| chr4_1 | exon | 59002469 | 59002583 | 59002469 | ID=Msa0559820-mRNA-1:exon:18174;Parent=Msa0559820-mRNA-1 |
| chr4_1 | exon | 59002701 | 59002802 | 59002701 | ID=Msa0559820-mRNA-1:exon:18173;Parent=Msa0559820-mRNA-1 |
| chr4_1 | exon | 59003301 | 59003434 | 59003301 | ID=Msa0559820-mRNA-1:exon:18172;Parent=Msa0559820-mRNA-1 |
| chr4_1 | exon | 59003533 | 59003628 | 59003533 | ID=Msa0559820-mRNA-1:exon:18171;Parent=Msa0559820-mRNA-1 |
| chr4_1 | exon | 59003990 | 59004175 | 59003990 | ID=Msa0559820-mRNA-1:exon:18170;Parent=Msa0559820-mRNA-1 |
| chr4_1 | CDS | 59003990 | 59004175 | 59003990 | ID=Msa0559820-mRNA-1:cds;Parent=Msa0559820-mRNA-1 |
| chr4_1 | CDS | 59003533 | 59003628 | 59003533 | ID=Msa0559820-mRNA-1:cds;Parent=Msa0559820-mRNA-1 |
| chr4_1 | CDS | 59003301 | 59003434 | 59003301 | ID=Msa0559820-mRNA-1:cds;Parent=Msa0559820-mRNA-1 |
| chr4_1 | CDS | 59002701 | 59002802 | 59002701 | ID=Msa0559820-mRNA-1:cds;Parent=Msa0559820-mRNA-1 |
| chr4_1 | CDS | 59002469 | 59002583 | 59002469 | ID=Msa0559820-mRNA-1:cds;Parent=Msa0559820-mRNA-1 |
| chr4_1 | CDS | 59002138 | 59002194 | 59002138 | ID=Msa0559820-mRNA-1:cds;Parent=Msa0559820-mRNA-1 |
| chr4_1 | CDS | 59001650 | 59001697 | 59001650 | ID=Msa0559820-mRNA-1:cds;Parent=Msa0559820-mRNA-1 |
| chr4_1 | CDS | 59001439 | 59001507 | 59001439 | ID=Msa0559820-mRNA-1:cds;Parent=Msa0559820-mRNA-1 |
| chr4_1 | CDS | 59000509 | 59000589 | 59000509 | ID=Msa0559820-mRNA-1:cds;Parent=Msa0559820-mRNA-1 |
| chr4_1 | CDS | 59000282 | 59000353 | 59000282 | ID=Msa0559820-mRNA-1:cds;Parent=Msa0559820-mRNA-1 |
| chr4_1 | CDS | 59000153 | 59000194 | 59000153 | ID=Msa0559820-mRNA-1:cds;Parent=Msa0559820-mRNA-1 |
| chr4_1 | three_prime_UTR | 58999915 | 59000152 | 58999915 | ID=Msa0559820-mRNA-1:three_prime_utr;Parent=Msa0559820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
