Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638910 | XP_003608402.1 | 94.012 | 334 | 19 | 1 | 1 | 333 | 1 | 334 | 0.0 | 651 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638910 | sp|Q8H1G0|GAT28_ARATH | 59.043 | 188 | 69 | 3 | 40 | 220 | 80 | 266 | 1.54e-60 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638910 | G7JV51 | 94.012 | 334 | 19 | 1 | 1 | 333 | 1 | 334 | 0.0 | 651 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0638910 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0559820 | Msa0638910 | 0.879589 | 1.101435e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638910 | MtrunA17_Chr4g0049741 | 94.012 | 334 | 19 | 1 | 1 | 333 | 1 | 334 | 0.0 | 651 |
| Msa0638910 | MtrunA17_Chr3g0132751 | 46.512 | 301 | 132 | 8 | 40 | 318 | 66 | 359 | 1.54e-75 | 236 |
| Msa0638910 | MtrunA17_Chr3g0132761 | 43.333 | 270 | 127 | 7 | 5 | 268 | 33 | 282 | 5.90e-57 | 187 |
| Msa0638910 | MtrunA17_Chr5g0427661 | 54.595 | 185 | 67 | 7 | 41 | 219 | 72 | 245 | 2.45e-56 | 184 |
| Msa0638910 | MtrunA17_Chr4g0002231 | 48.387 | 93 | 41 | 2 | 126 | 211 | 43 | 135 | 2.56e-20 | 85.9 |
| Msa0638910 | MtrunA17_Chr3g0102511 | 47.115 | 104 | 40 | 6 | 140 | 235 | 11 | 107 | 7.50e-17 | 81.3 |
| Msa0638910 | MtrunA17_Chr3g0091641 | 63.830 | 47 | 17 | 0 | 103 | 149 | 493 | 539 | 1.44e-12 | 68.6 |
| Msa0638910 | MtrunA17_Chr4g0002251 | 52.727 | 55 | 18 | 1 | 177 | 231 | 9 | 55 | 1.63e-12 | 62.4 |
| Msa0638910 | MtrunA17_Chr4g0061021 | 64.444 | 45 | 16 | 0 | 104 | 148 | 501 | 545 | 7.41e-12 | 66.2 |
| Msa0638910 | MtrunA17_Chr4g0002261 | 72.093 | 43 | 11 | 1 | 108 | 149 | 24 | 66 | 8.04e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638910 | AT1G51600.1 | 59.043 | 188 | 69 | 3 | 40 | 220 | 80 | 266 | 1.56e-61 | 199 |
| Msa0638910 | AT1G51600.2 | 59.043 | 188 | 69 | 3 | 40 | 220 | 80 | 266 | 1.56e-61 | 199 |
| Msa0638910 | AT3G21175.2 | 55.440 | 193 | 70 | 5 | 38 | 220 | 74 | 260 | 3.39e-60 | 195 |
| Msa0638910 | AT3G21175.1 | 54.922 | 193 | 73 | 4 | 38 | 220 | 74 | 262 | 4.32e-60 | 195 |
| Msa0638910 | AT4G24470.1 | 47.442 | 215 | 96 | 6 | 19 | 230 | 63 | 263 | 4.74e-51 | 172 |
| Msa0638910 | AT4G24470.2 | 47.442 | 215 | 96 | 6 | 19 | 230 | 63 | 263 | 4.74e-51 | 172 |
| Msa0638910 | AT4G24470.3 | 47.442 | 215 | 96 | 6 | 19 | 230 | 63 | 263 | 6.31e-51 | 172 |
| Msa0638910 | AT3G21175.3 | 57.018 | 114 | 46 | 2 | 38 | 151 | 74 | 184 | 5.08e-33 | 122 |
Find 94 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTATAGACAAACTATTTC+TGG | 0.191039 | 4_3:+34541193 | Msa0638910:three_prime_UTR |
| TTTGAAACTCACATGGATTC+TGG | 0.211139 | 4_3:-34538826 | None:intergenic |
| CGGGCTCATGTGGGCAAATA+AGG | 0.235102 | 4_3:+34539047 | Msa0638910:CDS |
| CAAGCATTGCATAGAGTTCT+TGG | 0.242885 | 4_3:-34539024 | None:intergenic |
| TTCAACTAACTCTAGACTTT+TGG | 0.255714 | 4_3:+34541158 | Msa0638910:three_prime_UTR |
| ACCTCTCAGCAAGCTCTTTA+CGG | 0.268811 | 4_3:-34538213 | None:intergenic |
| AGGATTACAGGATAATATTA+TGG | 0.274171 | 4_3:+34540882 | Msa0638910:intron |
| ACTGAATTTGAGATTCCTTT+AGG | 0.291144 | 4_3:+34540928 | Msa0638910:CDS |
| AGCAAAACTGTCGGGACATT+TGG | 0.300350 | 4_3:+34537979 | Msa0638910:CDS |
| TCCGTGAAAGCTTTGAATTA+CGG | 0.336575 | 4_3:-34538117 | None:intergenic |
| TTGGCAAAGGCTTTGTTTCA+TGG | 0.339952 | 4_3:-34540038 | None:intergenic |
| GCTGTATTGTTACTCTTAGA+TGG | 0.341296 | 4_3:+34537912 | Msa0638910:CDS |
| GGAGATCTGCATCACTTGTT+AGG | 0.347795 | 4_3:+34538137 | Msa0638910:CDS |
| GAACTCTATGCAATGCTTGC+GGG | 0.368924 | 4_3:+34539028 | Msa0638910:CDS |
| TTGAAACTCACATGGATTCT+GGG | 0.372841 | 4_3:-34538825 | None:intergenic |
| ATTCCAATATGAGGACTTAC+TGG | 0.374469 | 4_3:+34541064 | Msa0638910:CDS |
| TGGAAACAAATTTGCGGCTC+TGG | 0.382542 | 4_3:+34541135 | Msa0638910:three_prime_UTR |
| TGGCAAAGGCTTTGTTTCAT+GGG | 0.392126 | 4_3:-34540037 | None:intergenic |
| GCAATGCTTGCGGGCTCATG+TGG | 0.395096 | 4_3:+34539037 | Msa0638910:CDS |
| GCCGGTCCTCGACGCATTAC+CGG | 0.398091 | 4_3:-34538997 | None:intergenic |
| GCAAAACTGTCGGGACATTT+GGG | 0.401442 | 4_3:+34537980 | Msa0638910:CDS |
| CAAAATTAAATCCGGTTACA+TGG | 0.403929 | 4_3:-34541281 | None:intergenic |
| GAACTCACCATTTCCTTTGA+AGG | 0.410545 | 4_3:+34537499 | Msa0638910:CDS |
| AGATGCCAGCATTGTGGAAT+TGG | 0.421996 | 4_3:+34538961 | Msa0638910:CDS |
| ACACTATACAAAATTAAATC+CGG | 0.426016 | 4_3:-34541289 | None:intergenic |
| CCCTTCCGTTACGCCAGAAA+AGG | 0.437686 | 4_3:+34537537 | Msa0638910:CDS |
| AGAAAATTCATGTGCTGCAC+AGG | 0.441655 | 4_3:+34539857 | Msa0638910:CDS |
| ACCTGCTCAATTATCATCTC+AGG | 0.443550 | 4_3:-34540078 | None:intergenic |
| TATCATCTCAGGTGACTGTC+TGG | 0.447979 | 4_3:-34540067 | None:intergenic |
| CAAGAGCATTATTCTCCACT+TGG | 0.451852 | 4_3:-34540700 | None:intergenic |
| CAGCCAGTAAGTCCTCATAT+TGG | 0.453388 | 4_3:-34541067 | None:intergenic |
| GAGTGGAACAGAAGCGGTAA+TGG | 0.454383 | 4_3:-34537464 | None:intergenic |
| TCCGTAATTCAAAGCTTTCA+CGG | 0.456528 | 4_3:+34538116 | Msa0638910:CDS |
| ATGCTGAATTCGTCTGAGAA+TGG | 0.460337 | 4_3:+34537379 | Msa0638910:CDS |
| TGCTGAATTCGTCTGAGAAT+GGG | 0.470907 | 4_3:+34537380 | Msa0638910:CDS |
| AATAGGATGCAACGGAAGAA+TGG | 0.473196 | 4_3:+34538730 | Msa0638910:intron |
| GGCAAAGGCTTTGTTTCATG+GGG | 0.473835 | 4_3:-34540036 | None:intergenic |
| AACCTCGCCTTCAAAGGAAA+TGG | 0.478631 | 4_3:-34537506 | None:intergenic |
| CAGTTCTCCTGCTGAAAACC+AGG | 0.478700 | 4_3:+34538780 | Msa0638910:CDS |
| AGTGGAACAGAAGCGGTAAT+GGG | 0.481649 | 4_3:-34537463 | None:intergenic |
| ATTGTTACTCTTAGATGGGC+AGG | 0.482284 | 4_3:+34537917 | Msa0638910:CDS |
| ACCTGAGATGATAATTGAGC+AGG | 0.486485 | 4_3:+34540077 | Msa0638910:CDS |
| TGCTCTTGATCTGCACGAGC+AGG | 0.491928 | 4_3:+34540715 | Msa0638910:CDS |
| ACAGAAGCGGTAATGGGTTG+AGG | 0.500608 | 4_3:-34537457 | None:intergenic |
| TTGCACCAATTCCACAATGC+TGG | 0.502619 | 4_3:-34538966 | None:intergenic |
| CTGAGAGATCTCGGCAAAGC+AGG | 0.503407 | 4_3:+34539349 | Msa0638910:CDS |
| GAGTACTGTTGCTAGAATCC+TGG | 0.505753 | 4_3:-34538798 | None:intergenic |
| TTCGGTGCAGCAAAACTGTC+GGG | 0.506228 | 4_3:+34537971 | Msa0638910:CDS |
| TGGACAGTTTGCATCATTGA+AGG | 0.506543 | 4_3:+34538750 | Msa0638910:CDS |
| GCTCTTTACGGCAAGTGTAC+CGG | 0.507579 | 4_3:-34538201 | None:intergenic |
| AACATAAACCTCGCCTTCAA+AGG | 0.517160 | 4_3:-34537512 | None:intergenic |
| CATTGGTGTGCGACCGAGCA+TGG | 0.519948 | 4_3:+34541101 | Msa0638910:three_prime_UTR |
| TCCGGTAATGCGTCGAGGAC+CGG | 0.522308 | 4_3:+34538996 | Msa0638910:CDS |
| GGTGACTGTCTGGCATCCAT+TGG | 0.523909 | 4_3:-34540057 | None:intergenic |
| CACCATTTCCTTTGAAGGCG+AGG | 0.528900 | 4_3:+34537504 | Msa0638910:CDS |
| GACCGAGCATGGTTTGTTCG+TGG | 0.528926 | 4_3:+34541112 | Msa0638910:three_prime_UTR |
| CTGTATTGTTACTCTTAGAT+GGG | 0.529102 | 4_3:+34537913 | Msa0638910:CDS |
| ACCTGATCATCAAAACCTAA+AGG | 0.529543 | 4_3:-34540943 | None:intergenic |
| TCGTGGTGGAAACAAATTTG+CGG | 0.534321 | 4_3:+34541129 | Msa0638910:three_prime_UTR |
| TTCGTCTGAGAATGGGTCAA+TGG | 0.534504 | 4_3:+34537387 | Msa0638910:CDS |
| AGCATTATTCTCCACTTGGA+TGG | 0.538269 | 4_3:-34540696 | None:intergenic |
| AAAGCTTTGAATTACGGAAA+GGG | 0.538823 | 4_3:-34538111 | None:intergenic |
| ATATTGATGATTCCAATATG+AGG | 0.538934 | 4_3:+34541055 | Msa0638910:CDS |
| AGCTACATTGGTACAGTGCA+TGG | 0.556675 | 4_3:-34537410 | None:intergenic |
| CATAGAGTTCTTGGACCAGC+CGG | 0.557209 | 4_3:-34539015 | None:intergenic |
| AAGGGAACACTGAGAGATCT+CGG | 0.561679 | 4_3:+34539340 | Msa0638910:intron |
| GAAAGCTTTGAATTACGGAA+AGG | 0.561743 | 4_3:-34538112 | None:intergenic |
| TTTCGGTGCAGCAAAACTGT+CGG | 0.562482 | 4_3:+34537970 | Msa0638910:CDS |
| TGAAACAAAGCCTTTGCCAA+TGG | 0.564941 | 4_3:+34540041 | Msa0638910:CDS |
| AAAATTAAATCCGGTTACAT+GGG | 0.565035 | 4_3:-34541280 | None:intergenic |
| GTCAGAAACGGAAGCTACAT+TGG | 0.567531 | 4_3:-34537422 | None:intergenic |
| ACTCACATGGATTCTGGGAA+AGG | 0.570438 | 4_3:-34538820 | None:intergenic |
| CACCACGAACAAACCATGCT+CGG | 0.572737 | 4_3:-34541114 | None:intergenic |
| GTAGCTTCCGTTTCTGACGA+AGG | 0.576494 | 4_3:+34537427 | Msa0638910:CDS |
| GTAATGCGTCGAGGACCGGC+TGG | 0.578356 | 4_3:+34539000 | Msa0638910:CDS |
| ATTACAGGATAATATTATGG+AGG | 0.581083 | 4_3:+34540885 | Msa0638910:intron |
| CTGCACCGAAAAGTCAGAAG+TGG | 0.584625 | 4_3:-34537958 | None:intergenic |
| AGAACTCTATGCAATGCTTG+CGG | 0.585395 | 4_3:+34539027 | Msa0638910:CDS |
| ATGTGCTGCACAGGACAAGA+AGG | 0.588693 | 4_3:+34539866 | Msa0638910:CDS |
| TGTCTGGCATCCATTGGCAA+AGG | 0.604496 | 4_3:-34540051 | None:intergenic |
| CGAGCATGGTTTGTTCGTGG+TGG | 0.605610 | 4_3:+34541115 | Msa0638910:three_prime_UTR |
| TGATAACTTGTCCATCCAAG+TGG | 0.607711 | 4_3:+34540685 | Msa0638910:CDS |
| AGTTCACTAGCACGAGAGAG+TGG | 0.611323 | 4_3:-34537481 | None:intergenic |
| GAACGTAGATGCCAGCATTG+TGG | 0.619610 | 4_3:+34538955 | Msa0638910:CDS |
| CAATGCTTGCGGGCTCATGT+GGG | 0.620002 | 4_3:+34539038 | Msa0638910:CDS |
| GCAAAGGCTTTGTTTCATGG+GGG | 0.623713 | 4_3:-34540035 | None:intergenic |
| ATTCATCTAATAGGATGCAA+CGG | 0.631265 | 4_3:+34538722 | Msa0638910:intron |
| ACGAGAGAGTGGAACAGAAG+CGG | 0.632477 | 4_3:-34537470 | None:intergenic |
| GAGATCTCGGCAAAGCAGGA+AGG | 0.645047 | 4_3:+34539353 | Msa0638910:CDS |
| AATTGGTGCAAAGTCTACTC+CGG | 0.650622 | 4_3:+34538978 | Msa0638910:CDS |
| TGGCTGTGATCTAAAGACAT+TGG | 0.657189 | 4_3:+34541084 | Msa0638910:exon |
| TGCACCGAAAAGTCAGAAGT+GGG | 0.670616 | 4_3:-34537957 | None:intergenic |
| TCTACTCCGGTAATGCGTCG+AGG | 0.699165 | 4_3:+34538991 | Msa0638910:CDS |
| GCCGTAAAGAGCTTGCTGAG+AGG | 0.703271 | 4_3:+34538212 | Msa0638910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTCTTTTATATTATAAAT+TGG | + | chr4_3:34538312-34538331 | Msa0638910:intron | 10.0% |
| !!! | TTTTGATCATGTTTATTATT+TGG | + | chr4_3:34537806-34537825 | Msa0638910:intron | 15.0% |
| !!! | TTTTATATTATAAATTGGTC+TGG | + | chr4_3:34538317-34538336 | Msa0638910:intron | 15.0% |
| !! | AAAAGGAAAAAGAAAAAAAA+AGG | - | chr4_3:34538392-34538411 | None:intergenic | 15.0% |
| !!! | CTTTTTCCTTTTAAATTATT+TGG | + | chr4_3:34538400-34538419 | Msa0638910:intron | 15.0% |
| !! | TTTAAGCCAAATAATTTAAA+AGG | - | chr4_3:34538409-34538428 | None:intergenic | 15.0% |
| !! | ATGAAATTAATTCATCTAAT+AGG | + | chr4_3:34538713-34538732 | Msa0638910:intron | 15.0% |
| !! | TCAATAACATATTATATTCT+TGG | - | chr4_3:34539461-34539480 | None:intergenic | 15.0% |
| !!! | TAAAAAAATTGAACCTTTTC+TGG | - | chr4_3:34537553-34537572 | None:intergenic | 20.0% |
| !!! | CATGTTTATTATTTGGATTT+TGG | + | chr4_3:34537813-34537832 | Msa0638910:intron | 20.0% |
| !! | TTTCAAAATAACTCTTCATT+CGG | + | chr4_3:34538010-34538029 | Msa0638910:intron | 20.0% |
| !! | TAAAATTTATGATGTTTACC+AGG | + | chr4_3:34538078-34538097 | Msa0638910:intron | 20.0% |
| !! | AAAATTTATGATGTTTACCA+GGG | + | chr4_3:34538079-34538098 | Msa0638910:intron | 20.0% |
| !!! | TTATGAGCTAATTTAAGATT+GGG | + | chr4_3:34538435-34538454 | Msa0638910:intron | 20.0% |
| !! | ATATTACAAATAACCAAGAT+AGG | - | chr4_3:34538557-34538576 | None:intergenic | 20.0% |
| !!! | CATTAGTTTGAAAGTTAAAA+TGG | + | chr4_3:34538856-34538875 | Msa0638910:intron | 20.0% |
| !!! | TTACCTTTTAGTCTTAATAT+TGG | + | chr4_3:34538887-34538906 | Msa0638910:intron | 20.0% |
| !! | AAAGAAATCATACAAAAATG+AGG | - | chr4_3:34539167-34539186 | None:intergenic | 20.0% |
| !! | TAAGACTGATAAAAGATAAA+GGG | - | chr4_3:34539993-34540012 | None:intergenic | 20.0% |
| !! | ATAAGACTGATAAAAGATAA+AGG | - | chr4_3:34539994-34540013 | None:intergenic | 20.0% |
| !! | TATTTATTTGTTTGTATTCG+TGG | + | chr4_3:34540107-34540126 | Msa0638910:intron | 20.0% |
| !! | TAGAAAATGTAATTACTACA+TGG | - | chr4_3:34540306-34540325 | None:intergenic | 20.0% |
| !!! | TGTAGTAATTACATTTTCTA+TGG | + | chr4_3:34540306-34540325 | Msa0638910:intron | 20.0% |
| !! | TAATTAAGTTTGATATGACA+GGG | - | chr4_3:34540342-34540361 | None:intergenic | 20.0% |
| !! | ATAATTAAGTTTGATATGAC+AGG | - | chr4_3:34540343-34540362 | None:intergenic | 20.0% |
| !! | TAAGAATTAAGTAAATGAAG+CGG | + | chr4_3:34540366-34540385 | Msa0638910:intron | 20.0% |
| !! | ATGTTCGGATAAAAAAATTT+AGG | - | chr4_3:34540578-34540597 | None:intergenic | 20.0% |
| !! | CAATAAAATGACATTATGTT+CGG | - | chr4_3:34540593-34540612 | None:intergenic | 20.0% |
| !!! | TGTCATTTTATTGAACATTT+TGG | + | chr4_3:34540600-34540619 | Msa0638910:intron | 20.0% |
| !! | ACAAAGTAAATGATAGATAA+AGG | - | chr4_3:34540994-34541013 | None:intergenic | 20.0% |
| !! | ACACTATACAAAATTAAATC+CGG | - | chr4_3:34541292-34541311 | None:intergenic | 20.0% |
| ! | AAAAACTTCAATTGAACGAT+GGG | - | chr4_3:34537593-34537612 | None:intergenic | 25.0% |
| ! | AAAAAACTTCAATTGAACGA+TGG | - | chr4_3:34537594-34537613 | None:intergenic | 25.0% |
| ! | ACTCTATGCAATAAAGTTTA+AGG | + | chr4_3:34537682-34537701 | Msa0638910:intron | 25.0% |
| !! | TATGCAATAAAGTTTAAGGT+TGG | + | chr4_3:34537686-34537705 | Msa0638910:intron | 25.0% |
| !! | ACCATTCTTGTGATTTTTAA+AGG | + | chr4_3:34537846-34537865 | Msa0638910:intron | 25.0% |
| !! | TCCTTTAAAAATCACAAGAA+TGG | - | chr4_3:34537850-34537869 | None:intergenic | 25.0% |
| ! | AAATTTATGATGTTTACCAG+GGG | + | chr4_3:34538080-34538099 | Msa0638910:intron | 25.0% |
| ! | TGTGAAACAACAATATCAAT+AGG | - | chr4_3:34538289-34538308 | None:intergenic | 25.0% |
| !!! | GACAAATCTACAATTTTTTC+GGG | - | chr4_3:34538370-34538389 | None:intergenic | 25.0% |
| !!! | GGACAAATCTACAATTTTTT+CGG | - | chr4_3:34538371-34538390 | None:intergenic | 25.0% |
| !! | CTTATGAGCTAATTTAAGAT+TGG | + | chr4_3:34538434-34538453 | Msa0638910:intron | 25.0% |
| !! | AATGGAAGCATATTTAAAGA+GGG | - | chr4_3:34538520-34538539 | None:intergenic | 25.0% |
| !! | AAATGGAAGCATATTTAAAG+AGG | - | chr4_3:34538521-34538540 | None:intergenic | 25.0% |
| !!! | TAGGCTTTATTCAACTTAAA+TGG | - | chr4_3:34538538-34538557 | None:intergenic | 25.0% |
| !!! | ATATAACTTTGAAACTCACA+TGG | - | chr4_3:34538836-34538855 | None:intergenic | 25.0% |
| !!! | TCTTAATATTGGTGCTAATA+CGG | + | chr4_3:34538898-34538917 | Msa0638910:intron | 25.0% |
| !! | GAAATTTGATGATATTACAG+AGG | - | chr4_3:34539234-34539253 | None:intergenic | 25.0% |
| !! | TTCATTTTGCATATTTTCAC+TGG | + | chr4_3:34539408-34539427 | Msa0638910:intron | 25.0% |
| !! | ATTCTTGGTTACTTTATAAC+AGG | - | chr4_3:34539446-34539465 | None:intergenic | 25.0% |
| !!! | TAATTTGCATTGGATTTTGA+GGG | - | chr4_3:34539710-34539729 | None:intergenic | 25.0% |
| !!! | ACAAAAGTGTCATTAATTTG+CGG | - | chr4_3:34539911-34539930 | None:intergenic | 25.0% |
| !! | TTATTGAGAATGCAAGTTTT+TGG | + | chr4_3:34540422-34540441 | Msa0638910:intron | 25.0% |
| !!! | TGATAGTTTTGTCAAGTTTT+TGG | + | chr4_3:34540498-34540517 | Msa0638910:intron | 25.0% |
| !! | AACATTTTGGATGAACATTT+TGG | + | chr4_3:34540613-34540632 | Msa0638910:intron | 25.0% |
| ! | AGGATTACAGGATAATATTA+TGG | + | chr4_3:34540882-34540901 | Msa0638910:intron | 25.0% |
| ! | ATTACAGGATAATATTATGG+AGG | + | chr4_3:34540885-34540904 | Msa0638910:intron | 25.0% |
| !! | ATATTGATGATTCCAATATG+AGG | + | chr4_3:34541055-34541074 | Msa0638910:CDS | 25.0% |
| ! | GTTTATAGACAAACTATTTC+TGG | + | chr4_3:34541193-34541212 | Msa0638910:three_prime_UTR | 25.0% |
| ! | AAAATTAAATCCGGTTACAT+GGG | - | chr4_3:34541283-34541302 | None:intergenic | 25.0% |
| AAAACTTCAATTGAACGATG+GGG | - | chr4_3:34537592-34537611 | None:intergenic | 30.0% | |
| TTGGATTAAGTTTCAGATAG+TGG | + | chr4_3:34537705-34537724 | Msa0638910:intron | 30.0% | |
| TGGATTAAGTTTCAGATAGT+GGG | + | chr4_3:34537706-34537725 | Msa0638910:intron | 30.0% | |
| CTGTATTGTTACTCTTAGAT+GGG | + | chr4_3:34537913-34537932 | Msa0638910:CDS | 30.0% | |
| !! | AAAGCTTTGAATTACGGAAA+GGG | - | chr4_3:34538114-34538133 | None:intergenic | 30.0% |
| !!! | GATGTTTTGAGAAGAAAATC+CGG | + | chr4_3:34538182-34538201 | Msa0638910:CDS | 30.0% |
| AAGTTGAATAAAGCCTATCT+TGG | + | chr4_3:34538541-34538560 | Msa0638910:intron | 30.0% | |
| ATTCATCTAATAGGATGCAA+CGG | + | chr4_3:34538722-34538741 | Msa0638910:intron | 30.0% | |
| GCACCAATATTAAGACTAAA+AGG | - | chr4_3:34538893-34538912 | None:intergenic | 30.0% | |
| ! | TCTTTATGTTAGCTTAGCAT+AGG | + | chr4_3:34539079-34539098 | Msa0638910:intron | 30.0% |
| !! | TATGTTATTGATTCCGCATT+CGG | + | chr4_3:34539470-34539489 | Msa0638910:intron | 30.0% |
| !! | CTATTTGCTACCTTTTTGTT+TGG | + | chr4_3:34539676-34539695 | Msa0638910:intron | 30.0% |
| !! | CTAATTTGCATTGGATTTTG+AGG | - | chr4_3:34539711-34539730 | None:intergenic | 30.0% |
| ! | GATTACACTCTAATTTGCAT+TGG | - | chr4_3:34539720-34539739 | None:intergenic | 30.0% |
| ! | CATGAAATTTGAAGCATCTT+TGG | - | chr4_3:34539794-34539813 | None:intergenic | 30.0% |
| CAATGTCACAAGAAAATAAG+GGG | - | chr4_3:34539963-34539982 | None:intergenic | 30.0% | |
| CCAATGTCACAAGAAAATAA+GGG | - | chr4_3:34539964-34539983 | None:intergenic | 30.0% | |
| ACCAATGTCACAAGAAAATA+AGG | - | chr4_3:34539965-34539984 | None:intergenic | 30.0% | |
| !! | TCTTATGTGTTTTTATCCTC+AGG | + | chr4_3:34540008-34540027 | Msa0638910:intron | 30.0% |
| ! | AAGAAACTAAAATTAGCCTC+AGG | + | chr4_3:34540156-34540175 | Msa0638910:intron | 30.0% |
| GCATTCTCAATAACATGAAT+TGG | - | chr4_3:34540415-34540434 | None:intergenic | 30.0% | |
| ACTATCATCATTATCCACAT+GGG | - | chr4_3:34540485-34540504 | None:intergenic | 30.0% | |
| AACTATCATCATTATCCACA+TGG | - | chr4_3:34540486-34540505 | None:intergenic | 30.0% | |
| !!! | GCGTGCATACTTTTTTAATT+TGG | + | chr4_3:34540520-34540539 | Msa0638910:intron | 30.0% |
| TGAAAACAGTTCGAGTATTA+GGG | + | chr4_3:34540827-34540846 | Msa0638910:intron | 30.0% | |
| ! | ACTGAATTTGAGATTCCTTT+AGG | + | chr4_3:34540928-34540947 | Msa0638910:CDS | 30.0% |
| ! | TTCAACTAACTCTAGACTTT+TGG | + | chr4_3:34541158-34541177 | Msa0638910:three_prime_UTR | 30.0% |
| CAAAATTAAATCCGGTTACA+TGG | - | chr4_3:34541284-34541303 | None:intergenic | 30.0% | |
| ! | TTTTTCACCTTCGTCAGAAA+CGG | - | chr4_3:34537437-34537456 | None:intergenic | 35.0% |
| AAACTTCAATTGAACGATGG+GGG | - | chr4_3:34537591-34537610 | None:intergenic | 35.0% | |
| !!! | ATAGTGGGTTTTCTACAATG+TGG | + | chr4_3:34537721-34537740 | Msa0638910:intron | 35.0% |
| ACCTGCATTTCATTACAAAG+GGG | - | chr4_3:34537888-34537907 | None:intergenic | 35.0% | |
| CACCTGCATTTCATTACAAA+GGG | - | chr4_3:34537889-34537908 | None:intergenic | 35.0% | |
| GCTGTATTGTTACTCTTAGA+TGG | + | chr4_3:34537912-34537931 | Msa0638910:CDS | 35.0% | |
| !! | GAAAGCTTTGAATTACGGAA+AGG | - | chr4_3:34538115-34538134 | None:intergenic | 35.0% |
| TCCGTAATTCAAAGCTTTCA+CGG | + | chr4_3:34538116-34538135 | Msa0638910:CDS | 35.0% | |
| !! | TCCGTGAAAGCTTTGAATTA+CGG | - | chr4_3:34538120-34538139 | None:intergenic | 35.0% |
| ! | TCTAGGGTTGTTATGATCTT+TGG | + | chr4_3:34538240-34538259 | Msa0638910:intron | 35.0% |
| ! | TTATGATCTTTGGTGCAGTT+TGG | + | chr4_3:34538250-34538269 | Msa0638910:intron | 35.0% |
| ! | TTTAAGATTGGGCAAGTAGT+TGG | + | chr4_3:34538446-34538465 | Msa0638910:intron | 35.0% |
| TTAGACACTAACATGTTCTG+CGG | + | chr4_3:34538660-34538679 | Msa0638910:intron | 35.0% | |
| TTGAAACTCACATGGATTCT+GGG | - | chr4_3:34538828-34538847 | None:intergenic | 35.0% | |
| ! | TTTGAAACTCACATGGATTC+TGG | - | chr4_3:34538829-34538848 | None:intergenic | 35.0% |
| CATCTACGTTCACTTAAGAA+TGG | - | chr4_3:34538946-34538965 | None:intergenic | 35.0% | |
| CATGATTTAACACCTAGTTC+TGG | - | chr4_3:34539144-34539163 | None:intergenic | 35.0% | |
| TATTTACCAACTAGAACCCA+TGG | + | chr4_3:34539189-34539208 | Msa0638910:intron | 35.0% | |
| ! | TGCTTTTGAACAGAATGAAC+TGG | + | chr4_3:34539378-34539397 | Msa0638910:CDS | 35.0% |
| TTAAAGTGTAATGCCGAATG+CGG | - | chr4_3:34539486-34539505 | None:intergenic | 35.0% | |
| ACATCCAGGTTACATGAAAA+CGG | - | chr4_3:34539544-34539563 | None:intergenic | 35.0% | |
| ! | TTTTCATGTAACCTGGATGT+TGG | + | chr4_3:34539544-34539563 | Msa0638910:intron | 35.0% |
| ! | GATGCAACACTAGAGAATTT+TGG | + | chr4_3:34539600-34539619 | Msa0638910:intron | 35.0% |
| GGCAAGTAATCCAAACAAAA+AGG | - | chr4_3:34539689-34539708 | None:intergenic | 35.0% | |
| ATTAGAGTGTAATCCGTTAG+TGG | + | chr4_3:34539726-34539745 | Msa0638910:intron | 35.0% | |
| TCAAGAAAGAAACCTCAAAC+TGG | - | chr4_3:34539755-34539774 | None:intergenic | 35.0% | |
| !!! | CCCTTATTTTCTTGTGACAT+TGG | + | chr4_3:34539961-34539980 | Msa0638910:intron | 35.0% |
| ! | ATTTGACTTATCTGCTCACA+TGG | + | chr4_3:34540192-34540211 | Msa0638910:intron | 35.0% |
| ! | TTTGACTTATCTGCTCACAT+GGG | + | chr4_3:34540193-34540212 | Msa0638910:intron | 35.0% |
| ! | ATGAATTGGTCTCAATTTGC+TGG | - | chr4_3:34540401-34540420 | None:intergenic | 35.0% |
| CTATCATCATTATCCACATG+GGG | - | chr4_3:34540484-34540503 | None:intergenic | 35.0% | |
| ! | GGATGAACATTTTGGATCTT+CGG | + | chr4_3:34540621-34540640 | Msa0638910:intron | 35.0% |
| CTGAAAACAGTTCGAGTATT+AGG | + | chr4_3:34540826-34540845 | Msa0638910:intron | 35.0% | |
| ! | TTAGGGCATTATTTGAGATC+TGG | + | chr4_3:34540844-34540863 | Msa0638910:intron | 35.0% |
| ! | TCTGGTATGTTACACTTTTG+AGG | + | chr4_3:34540862-34540881 | Msa0638910:intron | 35.0% |
| !! | GTTACACTTTTGAGGATTAC+AGG | + | chr4_3:34540870-34540889 | Msa0638910:intron | 35.0% |
| !! | TCCTTTAGGTTTTGATGATC+AGG | + | chr4_3:34540942-34540961 | Msa0638910:CDS | 35.0% |
| ACCTGATCATCAAAACCTAA+AGG | - | chr4_3:34540946-34540965 | None:intergenic | 35.0% | |
| CTAGCATTAGCAAGATTAGA+TGG | - | chr4_3:34540971-34540990 | None:intergenic | 35.0% | |
| ! | ATGAGTTCTGACATACATAC+AGG | + | chr4_3:34541029-34541048 | Msa0638910:intron | 35.0% |
| ATTCCAATATGAGGACTTAC+TGG | + | chr4_3:34541064-34541083 | Msa0638910:CDS | 35.0% | |
| !! | TAACTCTAGACTTTTGGAGA+TGG | + | chr4_3:34541164-34541183 | Msa0638910:three_prime_UTR | 35.0% |
| !! | AGACTTTTGGAGATGGTTTA+TGG | + | chr4_3:34541171-34541190 | Msa0638910:three_prime_UTR | 35.0% |
| ! | TTTTGTACATCCCATGTAAC+CGG | + | chr4_3:34541270-34541289 | Msa0638910:three_prime_UTR | 35.0% |
| ATGCTGAATTCGTCTGAGAA+TGG | + | chr4_3:34537379-34537398 | Msa0638910:CDS | 40.0% | |
| TGCTGAATTCGTCTGAGAAT+GGG | + | chr4_3:34537380-34537399 | Msa0638910:CDS | 40.0% | |
| GAACTCACCATTTCCTTTGA+AGG | + | chr4_3:34537499-34537518 | Msa0638910:CDS | 40.0% | |
| AACATAAACCTCGCCTTCAA+AGG | - | chr4_3:34537515-34537534 | None:intergenic | 40.0% | |
| !! | TTGAACCTTTTCTGGCGTAA+CGG | - | chr4_3:34537545-34537564 | None:intergenic | 40.0% |
| CATTACAAAGGGGTGATCAA+AGG | - | chr4_3:34537878-34537897 | None:intergenic | 40.0% | |
| ACCCCTTTGTAATGAAATGC+AGG | + | chr4_3:34537884-34537903 | Msa0638910:intron | 40.0% | |
| GCACCTGCATTTCATTACAA+AGG | - | chr4_3:34537890-34537909 | None:intergenic | 40.0% | |
| TTGTAATGAAATGCAGGTGC+AGG | + | chr4_3:34537890-34537909 | Msa0638910:intron | 40.0% | |
| ATTGTTACTCTTAGATGGGC+AGG | + | chr4_3:34537917-34537936 | Msa0638910:CDS | 40.0% | |
| CTCTTCATTCGGACATGTAT+TGG | + | chr4_3:34538021-34538040 | Msa0638910:intron | 40.0% | |
| ATATTTAAAGAGGGAGGCAG+GGG | - | chr4_3:34538511-34538530 | None:intergenic | 40.0% | |
| CATATTTAAAGAGGGAGGCA+GGG | - | chr4_3:34538512-34538531 | None:intergenic | 40.0% | |
| ! | GGAAGCATATTTAAAGAGGG+AGG | - | chr4_3:34538517-34538536 | None:intergenic | 40.0% |
| TGCACGACATTAGAATATGC+TGG | + | chr4_3:34538608-34538627 | Msa0638910:intron | 40.0% | |
| AATAGGATGCAACGGAAGAA+TGG | + | chr4_3:34538730-34538749 | Msa0638910:intron | 40.0% | |
| TGGACAGTTTGCATCATTGA+AGG | + | chr4_3:34538750-34538769 | Msa0638910:CDS | 40.0% | |
| TACGTTCACTTAAGAATGGC+AGG | - | chr4_3:34538942-34538961 | None:intergenic | 40.0% | |
| AATTGGTGCAAAGTCTACTC+CGG | + | chr4_3:34538978-34538997 | Msa0638910:CDS | 40.0% | |
| ! | CAAGCATTGCATAGAGTTCT+TGG | - | chr4_3:34539027-34539046 | None:intergenic | 40.0% |
| AGAACTCTATGCAATGCTTG+CGG | + | chr4_3:34539027-34539046 | Msa0638910:CDS | 40.0% | |
| ! | TTTAAGCCATGGGTTCTAGT+TGG | - | chr4_3:34539198-34539217 | None:intergenic | 40.0% |
| AAAGCTCCTGTTTAAGCCAT+GGG | - | chr4_3:34539208-34539227 | None:intergenic | 40.0% | |
| AAAAGCTCCTGTTTAAGCCA+TGG | - | chr4_3:34539209-34539228 | None:intergenic | 40.0% | |
| AAGATTTCCCAAGTCACTTC+AGG | - | chr4_3:34539271-34539290 | None:intergenic | 40.0% | |
| GCATGGTCTGTTGATATGAA+GGG | + | chr4_3:34539322-34539341 | Msa0638910:intron | 40.0% | |
| GGTTACATGAAAACGGAACT+GGG | - | chr4_3:34539537-34539556 | None:intergenic | 40.0% | |
| AGGTTACATGAAAACGGAAC+TGG | - | chr4_3:34539538-34539557 | None:intergenic | 40.0% | |
| ! | AGTTCCGTTTTCATGTAACC+TGG | + | chr4_3:34539537-34539556 | Msa0638910:intron | 40.0% |
| ! | TCTCAAGTTGTCACATCACA+TGG | + | chr4_3:34539571-34539590 | Msa0638910:intron | 40.0% |
| !! | ACACTAGAGAATTTTGGCGT+AGG | + | chr4_3:34539606-34539625 | Msa0638910:intron | 40.0% |
| AAGCATCTTTGGTTGAGAAC+AGG | - | chr4_3:34539783-34539802 | None:intergenic | 40.0% | |
| ! | TGTGCAGCACATGAATTTTC+TGG | - | chr4_3:34539858-34539877 | None:intergenic | 40.0% |
| AGAAAATTCATGTGCTGCAC+AGG | + | chr4_3:34539857-34539876 | Msa0638910:CDS | 40.0% | |
| !! | TGGCAAAGGCTTTGTTTCAT+GGG | - | chr4_3:34540040-34540059 | None:intergenic | 40.0% |
| !! | TTGGCAAAGGCTTTGTTTCA+TGG | - | chr4_3:34540041-34540060 | None:intergenic | 40.0% |
| TGAAACAAAGCCTTTGCCAA+TGG | + | chr4_3:34540041-34540060 | Msa0638910:CDS | 40.0% | |
| ACCTGAGATGATAATTGAGC+AGG | + | chr4_3:34540077-34540096 | Msa0638910:CDS | 40.0% | |
| ACCTGCTCAATTATCATCTC+AGG | - | chr4_3:34540081-34540100 | None:intergenic | 40.0% | |
| AATTTCCTCATGATAGCCTG+AGG | - | chr4_3:34540175-34540194 | None:intergenic | 40.0% | |
| !! | ATTGGTCTCAATTTGCTGGA+GGG | - | chr4_3:34540397-34540416 | None:intergenic | 40.0% |
| !! | AATTGGTCTCAATTTGCTGG+AGG | - | chr4_3:34540398-34540417 | None:intergenic | 40.0% |
| ! | TGATAACTTGTCCATCCAAG+TGG | + | chr4_3:34540685-34540704 | Msa0638910:CDS | 40.0% |
| AGCATTATTCTCCACTTGGA+TGG | - | chr4_3:34540699-34540718 | None:intergenic | 40.0% | |
| !! | CAAGAGCATTATTCTCCACT+TGG | - | chr4_3:34540703-34540722 | None:intergenic | 40.0% |
| GACTACCTACTCTTCAAATG+AGG | + | chr4_3:34540758-34540777 | Msa0638910:intron | 40.0% | |
| GGATACCTCATTTGAAGAGT+AGG | - | chr4_3:34540766-34540785 | None:intergenic | 40.0% | |
| ! | AAATGAGGTATCCTTCTGAG+AGG | + | chr4_3:34540773-34540792 | Msa0638910:intron | 40.0% |
| ! | AATGAGGTATCCTTCTGAGA+GGG | + | chr4_3:34540774-34540793 | Msa0638910:intron | 40.0% |
| AGAGGGGAAAGTCATGAAAA+GGG | + | chr4_3:34540791-34540810 | Msa0638910:intron | 40.0% | |
| GAAAGTCATGAAAAGGGTTG+AGG | + | chr4_3:34540797-34540816 | Msa0638910:intron | 40.0% | |
| ! | AGGATTTTGCTGATGCATCT+GGG | + | chr4_3:34540905-34540924 | Msa0638910:CDS | 40.0% |
| TGGCTGTGATCTAAAGACAT+TGG | + | chr4_3:34541084-34541103 | Msa0638910:exon | 40.0% | |
| ! | TCGTGGTGGAAACAAATTTG+CGG | + | chr4_3:34541129-34541148 | Msa0638910:three_prime_UTR | 40.0% |
| TTCGTCTGAGAATGGGTCAA+TGG | + | chr4_3:34537387-34537406 | Msa0638910:CDS | 45.0% | |
| AGCTACATTGGTACAGTGCA+TGG | - | chr4_3:34537413-34537432 | None:intergenic | 45.0% | |
| GTCAGAAACGGAAGCTACAT+TGG | - | chr4_3:34537425-34537444 | None:intergenic | 45.0% | |
| AGTGGAACAGAAGCGGTAAT+GGG | - | chr4_3:34537466-34537485 | None:intergenic | 45.0% | |
| AACCTCGCCTTCAAAGGAAA+TGG | - | chr4_3:34537509-34537528 | None:intergenic | 45.0% | |
| ! | CGTACCCACTTCTGACTTTT+CGG | + | chr4_3:34537953-34537972 | Msa0638910:CDS | 45.0% |
| TGCACCGAAAAGTCAGAAGT+GGG | - | chr4_3:34537960-34537979 | None:intergenic | 45.0% | |
| ! | TTTCGGTGCAGCAAAACTGT+CGG | + | chr4_3:34537970-34537989 | Msa0638910:CDS | 45.0% |
| AGCAAAACTGTCGGGACATT+TGG | + | chr4_3:34537979-34537998 | Msa0638910:CDS | 45.0% | |
| GCAAAACTGTCGGGACATTT+GGG | + | chr4_3:34537980-34537999 | Msa0638910:CDS | 45.0% | |
| GGAGATCTGCATCACTTGTT+AGG | + | chr4_3:34538137-34538156 | Msa0638910:CDS | 45.0% | |
| ACCTCTCAGCAAGCTCTTTA+CGG | - | chr4_3:34538216-34538235 | None:intergenic | 45.0% | |
| TTGCTGAGAGGTAGAGTCTA+GGG | + | chr4_3:34538224-34538243 | Msa0638910:intron | 45.0% | |
| TATTTAAAGAGGGAGGCAGG+GGG | - | chr4_3:34538510-34538529 | None:intergenic | 45.0% | |
| GCATATTTAAAGAGGGAGGC+AGG | - | chr4_3:34538513-34538532 | None:intergenic | 45.0% | |
| !! | CTAGAATCCTGGTTTTCAGC+AGG | - | chr4_3:34538790-34538809 | None:intergenic | 45.0% |
| ! | GAGTACTGTTGCTAGAATCC+TGG | - | chr4_3:34538801-34538820 | None:intergenic | 45.0% |
| ! | ACTCACATGGATTCTGGGAA+AGG | - | chr4_3:34538823-34538842 | None:intergenic | 45.0% |
| AGATGCCAGCATTGTGGAAT+TGG | + | chr4_3:34538961-34538980 | Msa0638910:CDS | 45.0% | |
| TTGCACCAATTCCACAATGC+TGG | - | chr4_3:34538969-34538988 | None:intergenic | 45.0% | |
| GAACTCTATGCAATGCTTGC+GGG | + | chr4_3:34539028-34539047 | Msa0638910:CDS | 45.0% | |
| AAGTTCTGCACTCCAGAACT+AGG | + | chr4_3:34539129-34539148 | Msa0638910:intron | 45.0% | |
| CTAGAACCCATGGCTTAAAC+AGG | + | chr4_3:34539199-34539218 | Msa0638910:intron | 45.0% | |
| CAAGTCACTTCAGGCAAGAT+GGG | - | chr4_3:34539262-34539281 | None:intergenic | 45.0% | |
| CATCTTGCCTGAAGTGACTT+GGG | + | chr4_3:34539261-34539280 | Msa0638910:intron | 45.0% | |
| TGCGAACGTAGGTCAGTAAT+TGG | - | chr4_3:34539305-34539324 | None:intergenic | 45.0% | |
| ATTACTGACCTACGTTCGCA+TGG | + | chr4_3:34539305-34539324 | Msa0638910:intron | 45.0% | |
| CGCATGGTCTGTTGATATGA+AGG | + | chr4_3:34539321-34539340 | Msa0638910:intron | 45.0% | |
| AAGGGAACACTGAGAGATCT+CGG | + | chr4_3:34539340-34539359 | Msa0638910:intron | 45.0% | |
| CTTGAGAAGATCCAACATCC+AGG | - | chr4_3:34539558-34539577 | None:intergenic | 45.0% | |
| CTCAAACTGGTGACCACTAA+CGG | - | chr4_3:34539742-34539761 | None:intergenic | 45.0% | |
| !! | GCAAAGGCTTTGTTTCATGG+GGG | - | chr4_3:34540038-34540057 | None:intergenic | 45.0% |
| !! | GGCAAAGGCTTTGTTTCATG+GGG | - | chr4_3:34540039-34540058 | None:intergenic | 45.0% |
| TATCATCTCAGGTGACTGTC+TGG | - | chr4_3:34540070-34540089 | None:intergenic | 45.0% | |
| ! | ATTAGCCTCAGGCTATCATG+AGG | + | chr4_3:34540167-34540186 | Msa0638910:intron | 45.0% |
| TTAGTGTCTTTAGCCCCATG+TGG | + | chr4_3:34540468-34540487 | Msa0638910:intron | 45.0% | |
| ! | ATGAGGTATCCTTCTGAGAG+GGG | + | chr4_3:34540775-34540794 | Msa0638910:intron | 45.0% |
| GAGAGGGGAAAGTCATGAAA+AGG | + | chr4_3:34540790-34540809 | Msa0638910:intron | 45.0% | |
| ! | GAGGATTTTGCTGATGCATC+TGG | + | chr4_3:34540904-34540923 | Msa0638910:CDS | 45.0% |
| CAGCCAGTAAGTCCTCATAT+TGG | - | chr4_3:34541070-34541089 | None:intergenic | 45.0% | |
| TGGAAACAAATTTGCGGCTC+TGG | + | chr4_3:34541135-34541154 | Msa0638910:three_prime_UTR | 45.0% | |
| !!! | ATAGTATTATTTTTATTTTT+AGG | + | chr4_3:34539818-34539837 | Msa0638910:intron | 5.0% |
| GTAGCTTCCGTTTCTGACGA+AGG | + | chr4_3:34537427-34537446 | Msa0638910:CDS | 50.0% | |
| !! | ACAGAAGCGGTAATGGGTTG+AGG | - | chr4_3:34537460-34537479 | None:intergenic | 50.0% |
| GAGTGGAACAGAAGCGGTAA+TGG | - | chr4_3:34537467-34537486 | None:intergenic | 50.0% | |
| ACGAGAGAGTGGAACAGAAG+CGG | - | chr4_3:34537473-34537492 | None:intergenic | 50.0% | |
| AGTTCACTAGCACGAGAGAG+TGG | - | chr4_3:34537484-34537503 | None:intergenic | 50.0% | |
| ! | CACCATTTCCTTTGAAGGCG+AGG | + | chr4_3:34537504-34537523 | Msa0638910:CDS | 50.0% |
| !! | CCTTTTCTGGCGTAACGGAA+GGG | - | chr4_3:34537540-34537559 | None:intergenic | 50.0% |
| !! | ACCTTTTCTGGCGTAACGGA+AGG | - | chr4_3:34537541-34537560 | None:intergenic | 50.0% |
| CTGCACCGAAAAGTCAGAAG+TGG | - | chr4_3:34537961-34537980 | None:intergenic | 50.0% | |
| ! | TTCGGTGCAGCAAAACTGTC+GGG | + | chr4_3:34537971-34537990 | Msa0638910:CDS | 50.0% |
| !!! | GGAAAGGGTCATTTTTCCCC+TGG | - | chr4_3:34538099-34538118 | None:intergenic | 50.0% |
| GCTCTTTACGGCAAGTGTAC+CGG | - | chr4_3:34538204-34538223 | None:intergenic | 50.0% | |
| CTTGCTGAGAGGTAGAGTCT+AGG | + | chr4_3:34538223-34538242 | Msa0638910:intron | 50.0% | |
| CAAGCTTTCACGTGAAGACG+TGG | - | chr4_3:34538484-34538503 | None:intergenic | 50.0% | |
| TCTGCGGATCTTCTCGACTT+TGG | + | chr4_3:34538676-34538695 | Msa0638910:intron | 50.0% | |
| CAGTTCTCCTGCTGAAAACC+AGG | + | chr4_3:34538780-34538799 | Msa0638910:CDS | 50.0% | |
| GAACGTAGATGCCAGCATTG+TGG | + | chr4_3:34538955-34538974 | Msa0638910:CDS | 50.0% | |
| CATAGAGTTCTTGGACCAGC+CGG | - | chr4_3:34539018-34539037 | None:intergenic | 50.0% | |
| CCAAGTCACTTCAGGCAAGA+TGG | - | chr4_3:34539263-34539282 | None:intergenic | 50.0% | |
| CCATCTTGCCTGAAGTGACT+TGG | + | chr4_3:34539260-34539279 | Msa0638910:intron | 50.0% | |
| TCAACAGACCATGCGAACGT+AGG | - | chr4_3:34539316-34539335 | None:intergenic | 50.0% | |
| CGTTAGTGGTCACCAGTTTG+AGG | + | chr4_3:34539740-34539759 | Msa0638910:intron | 50.0% | |
| ATGTGCTGCACAGGACAAGA+AGG | + | chr4_3:34539866-34539885 | Msa0638910:CDS | 50.0% | |
| TGTCTGGCATCCATTGGCAA+AGG | - | chr4_3:34540054-34540073 | None:intergenic | 50.0% | |
| CATGACTTTCCCCTCTCAGA+AGG | - | chr4_3:34540787-34540806 | None:intergenic | 50.0% | |
| CACCACGAACAAACCATGCT+CGG | - | chr4_3:34541117-34541136 | None:intergenic | 50.0% | |
| CCCTTCCGTTACGCCAGAAA+AGG | + | chr4_3:34537537-34537556 | Msa0638910:CDS | 55.0% | |
| !! | GCCGTAAAGAGCTTGCTGAG+AGG | + | chr4_3:34538212-34538231 | Msa0638910:CDS | 55.0% |
| CACGTGAAGACGTGGCACAA+AGG | - | chr4_3:34538476-34538495 | None:intergenic | 55.0% | |
| TCTACTCCGGTAATGCGTCG+AGG | + | chr4_3:34538991-34539010 | Msa0638910:CDS | 55.0% | |
| CAATGCTTGCGGGCTCATGT+GGG | + | chr4_3:34539038-34539057 | Msa0638910:CDS | 55.0% | |
| CGGGCTCATGTGGGCAAATA+AGG | + | chr4_3:34539047-34539066 | Msa0638910:CDS | 55.0% | |
| CTGAGAGATCTCGGCAAAGC+AGG | + | chr4_3:34539349-34539368 | Msa0638910:CDS | 55.0% | |
| GAGATCTCGGCAAAGCAGGA+AGG | + | chr4_3:34539353-34539372 | Msa0638910:CDS | 55.0% | |
| GTTTCATGGGGGCTTTCCTG+AGG | - | chr4_3:34540027-34540046 | None:intergenic | 55.0% | |
| GGTGACTGTCTGGCATCCAT+TGG | - | chr4_3:34540060-34540079 | None:intergenic | 55.0% | |
| TGCTCTTGATCTGCACGAGC+AGG | + | chr4_3:34540715-34540734 | Msa0638910:CDS | 55.0% | |
| !! | GACCGAGCATGGTTTGTTCG+TGG | + | chr4_3:34541112-34541131 | Msa0638910:three_prime_UTR | 55.0% |
| !! | CGAGCATGGTTTGTTCGTGG+TGG | + | chr4_3:34541115-34541134 | Msa0638910:three_prime_UTR | 55.0% |
| TTAAAGAGGGAGGCAGGGGG+AGG | - | chr4_3:34538507-34538526 | None:intergenic | 60.0% | |
| TCCGGTAATGCGTCGAGGAC+CGG | + | chr4_3:34538996-34539015 | Msa0638910:CDS | 60.0% | |
| GCAATGCTTGCGGGCTCATG+TGG | + | chr4_3:34539037-34539056 | Msa0638910:CDS | 60.0% | |
| CATTGGTGTGCGACCGAGCA+TGG | + | chr4_3:34541101-34541120 | Msa0638910:three_prime_UTR | 60.0% | |
| GCCGGTCCTCGACGCATTAC+CGG | - | chr4_3:34539000-34539019 | None:intergenic | 65.0% | |
| GTAATGCGTCGAGGACCGGC+TGG | + | chr4_3:34539000-34539019 | Msa0638910:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 34537373 | 34541329 | 34537373 | ID=Msa0638910;Name=Msa0638910 |
| chr4_3 | mRNA | 34537373 | 34541329 | 34537373 | ID=Msa0638910-mRNA-1;Parent=Msa0638910;Name=Msa0638910-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.9|0.63|1|1|1|11|237|333 |
| chr4_3 | exon | 34537373 | 34537558 | 34537373 | ID=Msa0638910-mRNA-1:exon:7956;Parent=Msa0638910-mRNA-1 |
| chr4_3 | exon | 34537906 | 34538001 | 34537906 | ID=Msa0638910-mRNA-1:exon:7957;Parent=Msa0638910-mRNA-1 |
| chr4_3 | exon | 34538100 | 34538233 | 34538100 | ID=Msa0638910-mRNA-1:exon:7958;Parent=Msa0638910-mRNA-1 |
| chr4_3 | exon | 34538735 | 34538836 | 34538735 | ID=Msa0638910-mRNA-1:exon:7959;Parent=Msa0638910-mRNA-1 |
| chr4_3 | exon | 34538954 | 34539068 | 34538954 | ID=Msa0638910-mRNA-1:exon:7960;Parent=Msa0638910-mRNA-1 |
| chr4_3 | exon | 34539343 | 34539399 | 34539343 | ID=Msa0638910-mRNA-1:exon:7961;Parent=Msa0638910-mRNA-1 |
| chr4_3 | exon | 34539840 | 34539887 | 34539840 | ID=Msa0638910-mRNA-1:exon:7962;Parent=Msa0638910-mRNA-1 |
| chr4_3 | exon | 34540030 | 34540098 | 34540030 | ID=Msa0638910-mRNA-1:exon:7963;Parent=Msa0638910-mRNA-1 |
| chr4_3 | exon | 34540656 | 34540736 | 34540656 | ID=Msa0638910-mRNA-1:exon:7964;Parent=Msa0638910-mRNA-1 |
| chr4_3 | exon | 34540892 | 34540963 | 34540892 | ID=Msa0638910-mRNA-1:exon:7965;Parent=Msa0638910-mRNA-1 |
| chr4_3 | exon | 34541051 | 34541329 | 34541051 | ID=Msa0638910-mRNA-1:exon:7966;Parent=Msa0638910-mRNA-1 |
| chr4_3 | CDS | 34537373 | 34537558 | 34537373 | ID=Msa0638910-mRNA-1:cds;Parent=Msa0638910-mRNA-1 |
| chr4_3 | CDS | 34537906 | 34538001 | 34537906 | ID=Msa0638910-mRNA-1:cds;Parent=Msa0638910-mRNA-1 |
| chr4_3 | CDS | 34538100 | 34538233 | 34538100 | ID=Msa0638910-mRNA-1:cds;Parent=Msa0638910-mRNA-1 |
| chr4_3 | CDS | 34538735 | 34538836 | 34538735 | ID=Msa0638910-mRNA-1:cds;Parent=Msa0638910-mRNA-1 |
| chr4_3 | CDS | 34538954 | 34539068 | 34538954 | ID=Msa0638910-mRNA-1:cds;Parent=Msa0638910-mRNA-1 |
| chr4_3 | CDS | 34539343 | 34539399 | 34539343 | ID=Msa0638910-mRNA-1:cds;Parent=Msa0638910-mRNA-1 |
| chr4_3 | CDS | 34539840 | 34539887 | 34539840 | ID=Msa0638910-mRNA-1:cds;Parent=Msa0638910-mRNA-1 |
| chr4_3 | CDS | 34540030 | 34540098 | 34540030 | ID=Msa0638910-mRNA-1:cds;Parent=Msa0638910-mRNA-1 |
| chr4_3 | CDS | 34540656 | 34540736 | 34540656 | ID=Msa0638910-mRNA-1:cds;Parent=Msa0638910-mRNA-1 |
| chr4_3 | CDS | 34540892 | 34540963 | 34540892 | ID=Msa0638910-mRNA-1:cds;Parent=Msa0638910-mRNA-1 |
| chr4_3 | CDS | 34541051 | 34541092 | 34541051 | ID=Msa0638910-mRNA-1:cds;Parent=Msa0638910-mRNA-1 |
| chr4_3 | three_prime_UTR | 34541093 | 34541329 | 34541093 | ID=Msa0638910-mRNA-1:three_prime_utr;Parent=Msa0638910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
