AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0560270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560270 MtrunA17_Chr4g0050251 83.619 525 40 2 1 481 163 685 0.0 890
Msa0560270 MtrunA17_Chr4g0026731 74.307 541 69 4 1 474 69 606 0.0 807
Msa0560270 MtrunA17_Chr4g0050291 67.429 525 122 3 1 479 140 661 0.0 720
Msa0560270 MtrunA17_Chr4g0050261 93.333 345 22 1 155 498 402 746 0.0 671
Msa0560270 MtrunA17_Chr4g0050261 94.231 156 9 0 1 156 163 318 1.02e-97 311
Msa0560270 MtrunA17_Chr4g0050221 54.326 497 184 3 1 455 121 616 0.0 560
Msa0560270 MtrunA17_Chr4g0050201 54.656 494 175 5 1 450 52 540 0.0 545
Msa0560270 MtrunA17_Chr6g0477811 48.767 527 204 7 1 467 156 676 8.92e-165 482
Msa0560270 MtrunA17_Chr4g0039261 42.885 513 228 6 1 455 141 646 6.82e-140 418
Msa0560270 MtrunA17_Chr4g0039251 43.856 529 228 7 1 472 183 699 3.33e-135 407
Msa0560270 MtrunA17_Chr4g0039231 38.342 579 238 9 1 472 50 616 2.49e-130 392
Msa0560270 MtrunA17_Chr2g0327241 34.216 491 262 8 5 442 218 700 2.43e-85 278
Msa0560270 MtrunA17_Chr2g0316301 30.342 468 282 11 9 442 170 627 7.08e-61 210
Msa0560270 MtrunA17_Chr8g0384391 27.309 498 301 7 1 443 143 634 9.99e-59 205
Msa0560270 MtrunA17_Chr3g0130331 27.475 495 301 8 1 443 146 634 3.15e-55 195
Msa0560270 MtrunA17_Chr4g0065231 26.582 474 310 7 1 442 167 634 1.52e-54 193
Msa0560270 MtrunA17_Chr1g0202431 28.390 472 290 12 14 449 150 609 1.31e-50 182
Msa0560270 MtrunA17_Chr7g0263351 25.651 538 304 11 1 449 218 748 5.88e-45 168
Msa0560270 MtrunA17_Chr1g0176451 27.742 465 257 13 1 403 114 561 1.23e-43 162
Msa0560270 MtrunA17_Chr1g0208391 26.667 495 300 13 2 450 186 663 3.24e-43 163
Msa0560270 MtrunA17_Chr1g0213091 26.327 452 262 8 1 386 213 659 8.61e-43 162
Msa0560270 MtrunA17_Chr5g0408061 26.358 497 297 11 1 443 154 635 1.78e-41 157
Msa0560270 MtrunA17_Chr1g0176441 26.030 461 262 11 1 395 261 708 1.53e-40 155
Msa0560270 MtrunA17_Chr4g0062871 26.535 505 303 10 4 452 276 768 9.17e-39 151
Msa0560270 MtrunA17_Chr4g0062871 22.877 424 280 12 4 385 938 1356 2.42e-27 116
Msa0560270 MtrunA17_Chr1g0200651 27.506 429 246 8 1 375 180 597 2.61e-38 148
Msa0560270 MtrunA17_Chr5g0429871 25.519 482 287 12 11 438 112 575 8.81e-37 145
Msa0560270 MtrunA17_Chr5g0429871 23.077 429 277 10 1 384 758 1178 9.54e-27 114
Msa0560270 MtrunA17_Chr8g0359931 25.749 501 295 16 2 448 156 633 2.29e-36 142
Msa0560270 MtrunA17_Chr7g0267971 26.882 465 263 12 1 400 250 702 8.23e-35 138
Msa0560270 MtrunA17_Chr2g0331081 26.667 450 276 12 1 402 982 1425 1.31e-34 138
Msa0560270 MtrunA17_Chr2g0331081 24.248 499 304 9 1 442 302 783 2.35e-29 122
Msa0560270 MtrunA17_Chr7g0261971 25.109 458 281 14 1 410 966 1409 1.43e-34 138
Msa0560270 MtrunA17_Chr7g0261971 22.634 486 308 10 4 434 282 754 8.51e-24 105
Msa0560270 MtrunA17_Chr3g0104621 24.083 436 270 11 2 385 856 1282 2.03e-34 138
Msa0560270 MtrunA17_Chr3g0104621 35.484 155 97 2 11 165 188 339 3.25e-22 100
Msa0560270 MtrunA17_Chr4g0003981 23.974 463 299 13 24 444 980 1431 6.75e-34 136
Msa0560270 MtrunA17_Chr4g0003981 22.527 546 351 13 4 493 299 828 3.44e-22 100
Msa0560270 MtrunA17_Chr5g0446901 30.685 365 196 7 1 312 202 562 3.27e-33 133
Msa0560270 MtrunA17_Chr1g0198931 26.087 506 286 19 1 443 196 676 1.45e-32 131
Msa0560270 MtrunA17_Chr2g0332221 22.930 471 303 13 19 443 964 1420 2.16e-32 132
Msa0560270 MtrunA17_Chr2g0332221 22.587 487 321 9 4 444 293 769 3.74e-24 107
Msa0560270 MtrunA17_Chr7g0262241 24.337 415 252 12 1 365 971 1373 2.28e-32 132
Msa0560270 MtrunA17_Chr7g0262241 21.992 482 316 8 11 442 295 766 7.12e-24 105
Msa0560270 MtrunA17_Chr2g0332241 22.930 471 303 13 19 443 965 1421 2.48e-32 132
Msa0560270 MtrunA17_Chr2g0332241 22.793 487 320 9 4 444 293 769 7.16e-25 108
Msa0560270 MtrunA17_Chr3g0102731 46.259 147 76 1 1 147 187 330 2.54e-32 130
Msa0560270 MtrunA17_Chr7g0261951 24.017 458 286 13 1 410 970 1413 8.15e-32 130
Msa0560270 MtrunA17_Chr7g0261951 22.222 477 305 9 11 434 295 758 1.43e-23 105
Msa0560270 MtrunA17_Chr3g0138261 22.418 455 303 10 5 414 962 1411 9.58e-32 130
Msa0560270 MtrunA17_Chr3g0138261 22.708 480 319 8 1 434 289 762 7.19e-25 108
Msa0560270 MtrunA17_Chr8g0340651 23.585 530 333 12 11 490 311 818 1.12e-31 129
Msa0560270 MtrunA17_Chr8g0340651 25.951 447 272 12 3 401 998 1433 6.42e-31 127
Msa0560270 MtrunA17_Chr2g0332211 22.505 471 305 13 19 443 1048 1504 1.55e-31 129
Msa0560270 MtrunA17_Chr2g0332211 22.793 487 320 9 4 444 374 850 1.78e-24 107
Msa0560270 MtrunA17_Chr4g0003971 24.307 469 290 15 24 444 939 1390 2.41e-31 129
Msa0560270 MtrunA17_Chr4g0003971 23.857 503 295 15 4 442 287 765 1.19e-22 102
Msa0560270 MtrunA17_Chr1g0171351 24.010 404 261 8 4 365 988 1387 5.24e-31 127
Msa0560270 MtrunA17_Chr1g0171351 21.589 491 330 9 1 442 299 783 1.72e-23 104
Msa0560270 MtrunA17_Chr7g0262231 22.840 486 304 13 1 438 974 1436 6.81e-31 127
Msa0560270 MtrunA17_Chr7g0262231 21.593 477 308 9 11 434 295 758 6.28e-24 106
Msa0560270 MtrunA17_Chr2g0318061 39.286 168 96 2 1 165 120 284 1.66e-30 122
Msa0560270 MtrunA17_Chr0c20g0493841 24.380 484 304 8 9 442 299 770 2.08e-30 125
Msa0560270 MtrunA17_Chr0c20g0493841 23.765 425 271 12 6 385 954 1370 8.27e-28 118
Msa0560270 MtrunA17_Chr1g0148841 23.025 443 291 11 5 402 969 1406 2.65e-30 125
Msa0560270 MtrunA17_Chr1g0148841 24.145 497 309 13 1 443 289 771 4.84e-29 122
Msa0560270 MtrunA17_Chr8g0393191 38.953 172 97 3 1 168 160 327 1.84e-29 122
Msa0560270 MtrunA17_Chr8g0393191 28.333 300 183 9 171 447 523 813 2.68e-22 100
Msa0560270 MtrunA17_Chr1g0198291 24.390 410 258 9 1 365 985 1387 2.11e-29 123
Msa0560270 MtrunA17_Chr1g0198291 35.220 159 98 4 1 157 312 467 6.34e-20 94.0
Msa0560270 MtrunA17_Chr7g0262251 21.769 441 284 12 1 385 918 1353 1.08e-28 120
Msa0560270 MtrunA17_Chr7g0262251 23.926 489 306 9 14 449 293 768 5.88e-25 109
Msa0560270 MtrunA17_Chr1g0148811 23.568 454 287 13 31 441 975 1411 2.30e-28 119
Msa0560270 MtrunA17_Chr1g0148811 34.194 155 97 4 11 163 287 438 1.92e-20 95.5
Msa0560270 MtrunA17_Chr7g0262221 22.484 467 293 13 1 410 945 1399 2.31e-28 119
Msa0560270 MtrunA17_Chr7g0262221 21.250 560 336 14 14 482 281 826 2.12e-21 98.6
Msa0560270 MtrunA17_Chr7g0262261 23.154 501 317 14 2 444 892 1382 2.85e-28 119
Msa0560270 MtrunA17_Chr7g0262261 22.672 494 320 10 1 442 254 737 2.33e-24 107
Msa0560270 MtrunA17_Chr7g0265991 24.163 418 260 11 1 365 150 563 4.85e-28 118
Msa0560270 MtrunA17_Chr7g0265961 22.154 492 314 8 1 442 305 777 2.08e-27 117
Msa0560270 MtrunA17_Chr5g0411621 27.331 311 216 6 138 447 422 723 8.16e-27 114
Msa0560270 MtrunA17_Chr5g0411621 36.538 156 95 2 1 156 141 292 1.81e-25 110
Msa0560270 MtrunA17_Chr7g0266001 22.403 491 322 9 1 440 186 668 5.06e-26 112
Msa0560270 MtrunA17_Chr7g0265981 22.336 488 317 14 4 443 977 1450 1.77e-25 110
Msa0560270 MtrunA17_Chr7g0265981 34.416 154 98 2 11 163 317 468 5.45e-22 100
Msa0560270 MtrunA17_Chr7g0265971 22.500 480 313 9 1 429 301 772 1.84e-24 107
Msa0560270 MtrunA17_Chr7g0265971 22.727 506 307 14 4 443 969 1456 1.51e-23 105
Msa0560270 MtrunA17_Chr4g0069211 22.680 485 300 10 9 442 298 758 7.65e-23 102
Msa0560270 MtrunA17_Chr4g0069211 31.818 110 66 2 11 117 947 1050 7.62e-11 65.1
Msa0560270 MtrunA17_Chr4g0004021 26.174 298 174 10 24 279 977 1270 1.04e-22 102
Msa0560270 MtrunA17_Chr4g0004021 24.017 483 297 11 11 438 304 771 1.05e-21 99.4
Msa0560270 MtrunA17_Chr3g0093331 32.530 166 110 1 1 166 90 253 1.78e-22 96.7
Msa0560270 MtrunA17_Chr7g0261981 21.224 490 316 12 1 434 283 758 3.18e-22 100
Msa0560270 MtrunA17_Chr7g0261981 21.786 459 269 17 1 410 952 1369 1.34e-21 99.0
Msa0560270 MtrunA17_Chr1g0199471 39.726 146 84 3 1 145 608 750 1.92e-21 98.6
Msa0560270 MtrunA17_Chr7g0262321 35.065 154 94 3 14 166 21 169 1.04e-19 93.2
Msa0560270 MtrunA17_Chr7g0262321 22.651 415 258 16 31 399 688 1085 5.53e-15 78.2
Msa0560270 MtrunA17_Chr7g0264441 37.838 148 88 3 1 147 370 514 2.80e-19 91.7
Msa0560270 MtrunA17_Chr4g0050241 41.837 98 37 2 358 455 89 166 3.07e-18 82.8
Msa0560270 MtrunA17_Chr4g0050241 39.815 108 19 2 164 271 8 69 5.33e-15 73.2
Msa0560270 MtrunA17_Chr1g0180971 37.162 148 89 3 1 147 504 648 7.05e-18 87.0
Msa0560270 MtrunA17_Chr4g0028621 35.811 148 91 3 1 147 598 742 1.37e-15 80.1
Msa0560270 MtrunA17_Chr4g0047831 43.023 86 46 2 27 112 1 83 7.25e-14 67.4
Msa0560270 MtrunA17_Chr6g0472481 29.104 134 79 2 1 121 104 234 3.67e-13 69.7
Msa0560270 MtrunA17_Chr4g0069221 21.560 218 165 2 172 385 100 315 6.54e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560270 AT1G17840.1 50.593 506 190 5 1 452 159 658 3.65e-157 463
Msa0560270 AT3G21090.1 42.969 512 229 8 1 455 135 640 1.25e-141 423
Msa0560270 AT1G51460.1 36.486 518 258 6 1 452 120 632 1.25e-113 350
Msa0560270 AT2G28070.2 33.532 504 275 7 5 456 225 720 5.83e-87 282
Msa0560270 AT2G28070.1 33.532 504 275 7 5 456 225 720 5.83e-87 282
Msa0560270 AT1G51500.1 44.595 296 160 2 161 455 349 641 1.13e-79 262
Msa0560270 AT1G51500.1 52.410 166 77 1 1 166 134 297 1.24e-52 189
Msa0560270 AT2G13610.1 26.626 492 302 8 4 443 152 636 1.65e-59 207
Msa0560270 AT1G53270.1 28.879 464 283 8 3 442 141 581 1.48e-58 204
Msa0560270 AT5G19410.1 27.571 457 304 8 2 437 160 610 1.40e-56 199
Msa0560270 AT5G19410.2 27.571 457 304 8 2 437 169 619 2.37e-56 198
Msa0560270 AT4G25750.1 29.231 455 283 12 14 443 130 570 1.78e-54 192
Msa0560270 AT5G52860.1 28.603 458 281 13 14 443 143 582 6.17e-54 191
Msa0560270 AT3G55130.1 26.966 445 261 7 1 386 191 630 9.14e-49 179
Msa0560270 AT3G55110.1 27.064 436 263 5 1 386 183 613 9.70e-48 176
Msa0560270 AT3G55100.1 27.315 432 262 7 1 386 142 567 1.53e-47 175
Msa0560270 AT3G55100.2 27.315 432 262 7 1 386 142 567 1.53e-47 175
Msa0560270 AT2G01320.8 26.580 459 279 9 2 414 183 629 3.39e-45 168
Msa0560270 AT2G01320.5 26.580 459 279 9 2 414 183 629 3.39e-45 168
Msa0560270 AT2G01320.2 27.594 453 270 11 2 408 183 623 9.99e-45 167
Msa0560270 AT2G01320.1 26.711 453 274 9 2 408 183 623 1.00e-44 167
Msa0560270 AT2G01320.4 26.711 453 274 9 2 408 183 623 1.00e-44 167
Msa0560270 AT2G01320.3 27.594 453 270 11 2 408 183 623 1.03e-44 167
Msa0560270 AT3G55090.1 25.275 546 302 12 1 449 198 734 1.96e-43 164
Msa0560270 AT1G31770.1 26.915 483 292 12 1 437 170 637 2.05e-42 160
Msa0560270 AT5G13580.1 27.155 464 271 7 1 411 199 648 2.48e-42 160
Msa0560270 AT2G37360.1 25.836 538 302 14 1 449 224 753 3.09e-42 160
Msa0560270 AT3G53510.1 28.868 433 256 6 1 386 217 644 5.56e-41 157
Msa0560270 AT1G71960.1 27.273 506 288 15 1 444 173 660 6.53e-37 144
Msa0560270 AT4G27420.1 27.016 496 294 13 3 449 160 636 1.10e-36 144
Msa0560270 AT1G15210.1 26.606 436 269 14 1 392 958 1386 1.44e-36 145
Msa0560270 AT1G15210.1 37.162 148 90 2 11 157 317 462 1.83e-22 102
Msa0560270 AT1G59870.1 26.464 427 263 14 3 385 987 1406 5.30e-36 143
Msa0560270 AT1G59870.1 25.000 488 296 12 11 442 319 792 4.22e-29 122
Msa0560270 AT1G15520.1 24.395 496 302 14 1 444 939 1413 1.27e-35 142
Msa0560270 AT1G15520.1 23.045 486 320 8 4 442 295 773 4.32e-25 110
Msa0560270 AT2G29940.1 24.764 424 268 9 1 380 944 1360 9.75e-35 139
Msa0560270 AT2G29940.1 23.447 499 325 12 4 452 302 793 8.97e-32 130
Msa0560270 AT2G01320.7 29.240 342 189 9 2 297 183 517 3.54e-34 135
Msa0560270 AT2G01320.6 29.240 342 189 9 2 297 183 517 3.54e-34 135
Msa0560270 AT3G53480.1 24.119 539 331 11 5 492 316 827 4.48e-34 137
Msa0560270 AT3G53480.1 23.614 415 268 8 14 385 981 1389 8.48e-33 133
Msa0560270 AT3G16340.2 25.000 436 278 12 1 393 927 1356 7.80e-33 134
Msa0560270 AT3G16340.2 25.299 502 298 16 10 453 294 776 1.14e-28 121
Msa0560270 AT3G16340.1 25.000 436 278 12 1 393 932 1361 8.48e-33 133
Msa0560270 AT3G16340.1 25.150 501 305 14 10 453 294 781 6.32e-30 125
Msa0560270 AT2G37280.1 24.900 498 309 10 9 453 285 770 1.35e-32 133
Msa0560270 AT2G37280.1 24.155 414 267 10 14 385 944 1352 8.46e-32 130
Msa0560270 AT2G37280.2 24.900 498 309 10 9 453 285 770 1.39e-32 133
Msa0560270 AT2G37280.2 24.615 390 244 10 14 361 944 1325 1.28e-29 124
Msa0560270 AT2G37280.4 24.701 502 313 10 5 453 123 612 1.51e-32 132
Msa0560270 AT2G37280.4 24.155 414 267 10 14 385 786 1194 9.33e-32 130
Msa0560270 AT2G37280.3 24.900 498 309 10 9 453 314 799 1.56e-32 132
Msa0560270 AT2G37280.3 24.155 414 267 10 14 385 973 1381 1.06e-31 130
Msa0560270 AT3G25620.2 25.843 445 255 14 1 385 188 617 2.62e-32 131
Msa0560270 AT4G15230.4 24.184 521 312 13 9 462 208 712 2.65e-32 132
Msa0560270 AT4G15230.4 22.482 427 284 12 1 385 839 1260 8.86e-30 124
Msa0560270 AT4G15230.2 24.184 521 312 13 9 462 287 791 2.82e-32 132
Msa0560270 AT4G15230.2 21.760 409 269 13 1 362 918 1322 1.25e-24 108
Msa0560270 AT3G13220.1 27.955 440 255 12 1 387 195 625 3.00e-32 131
Msa0560270 AT4G15230.3 24.184 521 312 13 9 462 287 791 3.02e-32 132
Msa0560270 AT4G15230.3 22.482 427 284 12 1 385 918 1339 1.06e-29 124
Msa0560270 AT4G15230.1 24.184 521 312 13 9 462 287 791 3.02e-32 132
Msa0560270 AT4G15230.1 22.482 427 284 12 1 385 918 1339 1.06e-29 124
Msa0560270 AT2G26910.1 24.845 483 302 10 11 442 283 755 6.93e-32 130
Msa0560270 AT2G26910.1 23.272 434 285 12 19 410 954 1381 2.13e-29 123
Msa0560270 AT4G15215.9 26.403 481 290 13 9 438 281 748 1.07e-31 130
Msa0560270 AT4G15215.9 23.721 430 275 13 1 385 912 1333 3.47e-30 125
Msa0560270 AT4G15215.4 26.403 481 290 13 9 438 281 748 1.07e-31 130
Msa0560270 AT4G15215.4 23.721 430 275 13 1 385 912 1333 3.47e-30 125
Msa0560270 AT4G15215.5 26.403 481 290 13 9 438 281 748 1.07e-31 130
Msa0560270 AT4G15215.5 23.721 430 275 13 1 385 912 1333 3.47e-30 125
Msa0560270 AT4G15215.3 26.403 481 290 13 9 438 281 748 1.07e-31 130
Msa0560270 AT4G15215.3 23.721 430 275 13 1 385 912 1333 3.47e-30 125
Msa0560270 AT4G15215.2 26.403 481 290 13 9 438 281 748 1.07e-31 130
Msa0560270 AT4G15215.2 23.721 430 275 13 1 385 912 1333 3.47e-30 125
Msa0560270 AT4G15236.1 24.297 498 312 13 9 453 284 769 1.08e-31 130
Msa0560270 AT4G15236.1 21.546 427 288 10 1 385 908 1329 1.68e-28 120
Msa0560270 AT4G15215.11 26.403 481 290 13 9 438 284 751 1.09e-31 130
Msa0560270 AT4G15215.11 23.721 430 275 13 1 385 915 1336 3.61e-30 125
Msa0560270 AT4G15215.8 26.819 481 281 14 9 438 281 741 1.54e-31 129
Msa0560270 AT4G15215.8 23.721 430 275 13 1 385 905 1326 3.76e-30 125
Msa0560270 AT4G15215.10 26.819 481 281 14 9 438 281 741 1.54e-31 129
Msa0560270 AT4G15215.10 23.721 430 275 13 1 385 905 1326 3.76e-30 125
Msa0560270 AT4G15215.6 26.819 481 281 14 9 438 281 741 1.54e-31 129
Msa0560270 AT4G15215.6 23.721 430 275 13 1 385 905 1326 3.76e-30 125
Msa0560270 AT4G15215.7 26.819 481 281 14 9 438 281 741 1.54e-31 129
Msa0560270 AT4G15215.7 23.721 430 275 13 1 385 905 1326 3.76e-30 125
Msa0560270 AT4G15215.1 26.819 481 281 14 9 438 284 744 1.66e-31 129
Msa0560270 AT4G15215.1 23.721 430 275 13 1 385 908 1329 4.52e-30 125
Msa0560270 AT4G15233.3 23.848 499 313 12 9 453 224 709 2.74e-31 129
Msa0560270 AT4G15233.3 21.911 429 284 11 1 385 848 1269 1.02e-27 118
Msa0560270 AT4G15233.6 23.848 499 313 12 9 453 224 709 2.74e-31 129
Msa0560270 AT4G15233.6 21.911 429 284 11 1 385 848 1269 1.02e-27 118
Msa0560270 AT4G15233.1 23.848 499 313 12 9 453 286 771 3.00e-31 129
Msa0560270 AT4G15233.1 21.445 429 286 10 1 385 910 1331 1.23e-27 118
Msa0560270 AT4G15233.8 23.848 499 313 12 9 453 277 762 3.28e-31 129
Msa0560270 AT4G15233.8 21.911 429 284 11 1 385 901 1322 1.22e-27 118
Msa0560270 AT4G15233.2 23.848 499 313 12 9 453 286 771 3.37e-31 129
Msa0560270 AT4G15233.2 20.796 452 285 12 1 385 910 1355 2.22e-24 108
Msa0560270 AT4G15233.7 24.089 494 308 12 14 453 273 753 1.40e-30 127
Msa0560270 AT4G15233.7 21.911 429 284 11 1 385 892 1313 1.21e-27 118
Msa0560270 AT4G15233.5 24.551 501 311 13 14 462 211 696 2.07e-30 126
Msa0560270 AT4G15233.5 21.445 429 286 10 1 385 767 1188 9.45e-28 118
Msa0560270 AT4G15233.4 24.551 501 311 13 14 462 211 696 2.07e-30 126
Msa0560270 AT4G15233.4 21.445 429 286 10 1 385 767 1188 9.45e-28 118
Msa0560270 AT5G06530.4 41.071 168 90 4 1 164 74 236 2.55e-30 124
Msa0560270 AT5G06530.2 41.071 168 90 4 1 164 269 431 7.94e-30 124
Msa0560270 AT5G06530.1 41.071 168 90 4 1 164 269 431 7.94e-30 124
Msa0560270 AT2G36380.1 25.051 491 313 10 1 442 311 795 8.16e-30 124
Msa0560270 AT2G36380.1 23.155 393 248 11 19 365 988 1372 3.92e-22 101
Msa0560270 AT5G06530.3 41.071 168 90 4 1 164 269 431 1.34e-29 123
Msa0560270 AT3G30842.1 23.303 442 279 9 10 397 293 728 5.61e-27 115
Msa0560270 AT3G30842.1 24.221 417 259 13 27 396 965 1371 4.23e-25 110
Msa0560270 AT2G39350.1 42.105 152 85 1 1 152 200 348 6.48e-27 115
Msa0560270 AT2G39350.1 22.697 304 199 5 178 449 439 738 6.40e-15 78.2
Msa0560270 AT1G66950.1 24.847 491 314 11 1 442 313 797 9.65e-27 115
Msa0560270 AT1G66950.1 23.919 393 245 10 19 365 989 1373 7.53e-25 109
Msa0560270 AT3G25620.1 38.415 164 89 4 1 156 188 347 2.14e-26 112
Msa0560270 AT1G15520.2 23.045 486 320 8 4 442 295 773 8.26e-25 109
Msa0560270 AT1G15520.2 25.237 317 188 9 1 271 939 1252 1.13e-21 99.8
Msa0560270 AT1G53390.1 38.411 151 89 2 1 150 614 761 1.05e-22 102
Msa0560270 AT2G37010.2 37.838 148 88 3 1 147 591 735 2.14e-21 98.6
Msa0560270 AT2G37010.1 37.838 148 88 3 1 147 591 735 2.14e-21 98.6
Msa0560270 AT5G60740.1 33.540 161 103 3 1 160 606 763 3.90e-15 79.0
Msa0560270 AT3G21080.1 32.867 143 85 3 313 450 103 239 2.83e-14 73.2

Find 105 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAATTCCTAAGCCATTT+TGG 0.154736 4_1:+59516219 Msa0560270:CDS
ATGATTCCCATTACATAATT+AGG 0.177507 4_1:-59516137 None:intergenic
ATTGGAGGGTGGGGTGTTAA+AGG 0.234899 4_1:+59511699 Msa0560270:CDS
AACAGTTAAGGTTGTCAATA+AGG 0.258450 4_1:-59511553 None:intergenic
TTTCAAAGAGAGAGACAAAA+TGG 0.276296 4_1:+59515909 Msa0560270:CDS
AGGCACCGTTTACTATGATT+TGG 0.279176 4_1:+59513994 Msa0560270:CDS
ATGTATGCCCCTTAAAATTT+AGG 0.279322 4_1:-59516638 None:intergenic
GTAACATGAGTTACTCAAAA+TGG 0.286976 4_1:+59516393 Msa0560270:CDS
AACCTCTGTCTTCTGTCTTC+AGG 0.305705 4_1:+59511939 Msa0560270:CDS
ATTGTTCCTAATTATGTAAT+GGG 0.319300 4_1:+59516131 Msa0560270:CDS
TTCGTGATCTAGGCTATTAT+TGG 0.319699 4_1:+59513933 Msa0560270:CDS
GAGAGACAAAATGGGCATTA+TGG 0.322759 4_1:+59515918 Msa0560270:CDS
CACAAACAAGAACTGTCTTA+TGG 0.325241 4_1:+59511413 Msa0560270:five_prime_UTR
GTTACATTGGCTCTAAGTTT+AGG 0.329044 4_1:+59513974 Msa0560270:CDS
GGGGCGAACCGGAGGGTGTG+CGG 0.330505 4_1:+59516600 Msa0560270:CDS
TGAGTTTACAATCAAAGAAA+TGG 0.353477 4_1:+59511650 Msa0560270:CDS
CACAACATGTATCGTTGTAT+TGG 0.359289 4_1:-59516540 None:intergenic
AGCTCAAACACAAGACAAAC+AGG 0.360058 4_1:+59511371 Msa0560270:five_prime_UTR
TCTTCCTTAGACATTGTGTT+AGG 0.363648 4_1:-59511612 None:intergenic
TGGATCATTGTTACCTTGTA+TGG 0.363844 4_1:+59516508 Msa0560270:CDS
GGCACCGTTTACTATGATTT+GGG 0.364124 4_1:+59513995 Msa0560270:CDS
TCACTTCTTTCATTTATCTC+TGG 0.364219 4_1:+59514155 Msa0560270:CDS
TGCAAGTTATGACTCAATTA+AGG 0.366784 4_1:+59514018 Msa0560270:CDS
TGGGGTGTTAAAGGCATAAG+TGG 0.376232 4_1:+59511708 Msa0560270:CDS
GTGAACATGTTTCGTGATCT+AGG 0.385105 4_1:+59513923 Msa0560270:CDS
ATTACCTAACACAATGTCTA+AGG 0.385572 4_1:+59511608 Msa0560270:exon
TGTAGTGGATACCTCCAAAA+TGG 0.391193 4_1:-59516233 None:intergenic
ATAACTGGTGCTGGAATTCA+AGG 0.393286 4_1:+59516158 Msa0560270:CDS
GATGCGACCAACACAAGAAT+TGG 0.393945 4_1:+59511681 Msa0560270:CDS
CATTGTTCCTAATTATGTAA+TGG 0.395071 4_1:+59516130 Msa0560270:CDS
TATGTAATGGGAATCATAAC+TGG 0.397171 4_1:+59516143 Msa0560270:CDS
TAAGACTTTCCACCAACATT+AGG 0.397401 4_1:-59516091 None:intergenic
CACTGCTTCTCTAACAGTTA+AGG 0.407544 4_1:-59511565 None:intergenic
TTTCATTCATATGTATTTGA+AGG 0.415472 4_1:+59516266 Msa0560270:CDS
ACAACATGTATCGTTGTATT+GGG 0.416736 4_1:-59516539 None:intergenic
GGTAACAATGATCCAACAAT+AGG 0.418197 4_1:-59516500 None:intergenic
GCCCCTTAAAATTTAGGCTC+TGG 0.426345 4_1:-59516632 None:intergenic
CGCTTCTCCCGCACACCCTC+CGG 0.427870 4_1:-59516608 None:intergenic
GGGCGAACCGGAGGGTGTGC+GGG 0.429880 4_1:+59516601 Msa0560270:CDS
TTCTTAACTTTCATGAGCAT+TGG 0.431247 4_1:+59514179 Msa0560270:CDS
GGAGTGATTGCATATGTGAT+TGG 0.436342 4_1:+59515939 Msa0560270:CDS
AAAGAAGTCTTGGACGTGTT+AGG 0.439769 4_1:-59511767 None:intergenic
TTGATGGATGGAAGTAATAA+TGG 0.441317 4_1:-59511886 None:intergenic
AAACTTCAGTACTAGGTTGA+TGG 0.449080 4_1:-59511902 None:intergenic
GGGGTGTTAAAGGCATAAGT+GGG 0.451027 4_1:+59511709 Msa0560270:CDS
TGGTGGATTTCCTTCATTTG+TGG 0.451092 4_1:+59514199 Msa0560270:CDS
TATTATCAAAATTACAGAAA+AGG 0.456795 4_1:+59516472 Msa0560270:CDS
TCAGGTAGAACAGTTTACTT+TGG 0.457155 4_1:+59511957 Msa0560270:CDS
TAACATGAGTTACTCAAAAT+GGG 0.459756 4_1:+59516394 Msa0560270:CDS
TTAACTTTCATGAGCATTGG+TGG 0.466607 4_1:+59514182 Msa0560270:CDS
AGGTAATAAGTTATAGCTGC+TGG 0.469081 4_1:-59516008 None:intergenic
GGATACCTCCAAAATGGCTT+AGG 0.475062 4_1:-59516227 None:intergenic
GCTACTTTAGATCATAAAGA+TGG 0.475396 4_1:+59511852 Msa0560270:CDS
TGCACCCAAATCATAGTAAA+CGG 0.481022 4_1:-59513999 None:intergenic
ATGGGAATCATAACTGGTGC+TGG 0.488241 4_1:+59516149 Msa0560270:CDS
TTCATTTGTGGAAGACATGA+AGG 0.488994 4_1:+59514211 Msa0560270:CDS
GAAAAGGTGAAACCTATTGT+TGG 0.491126 4_1:+59516488 Msa0560270:CDS
ATTTGCTAGCCTAATGTTGG+TGG 0.494782 4_1:+59516082 Msa0560270:CDS
TTCATGTCTTCCACAAATGA+AGG 0.498311 4_1:-59514209 None:intergenic
TTTATTTGCTAGCCTAATGT+TGG 0.504434 4_1:+59516079 Msa0560270:CDS
GAGTTTACAATCAAAGAAAT+GGG 0.506206 4_1:+59511651 Msa0560270:CDS
AATGCTTAGTTCTTATTGAA+CGG 0.509034 4_1:+59513894 Msa0560270:CDS
ACCTCACAAGCAGTGGAAGC+AGG 0.514557 4_1:-59511981 None:intergenic
TCACATCCTTTCTGTAGACC+AGG 0.516275 4_1:-59516032 None:intergenic
ACAGGGGAAATTCTGATCAA+TGG 0.521767 4_1:+59511389 Msa0560270:five_prime_UTR
CCACCCTCCAATTCTTGTGT+TGG 0.523990 4_1:-59511688 None:intergenic
TCAATGGATCACAAGAAGAA+AGG 0.527070 4_1:+59513851 Msa0560270:CDS
ACCTGCTTCCACTGCTTGTG+AGG 0.532303 4_1:+59511980 Msa0560270:CDS
AACACAAGAATTGGAGGGTG+GGG 0.535592 4_1:+59511690 Msa0560270:CDS
GAGTGATTGCATATGTGATT+GGG 0.543029 4_1:+59515940 Msa0560270:CDS
CTTAGTCATATATGTTACAT+TGG 0.549322 4_1:+59513961 Msa0560270:CDS
TACCTCCCTGGTCTACAGAA+AGG 0.550157 4_1:+59516026 Msa0560270:CDS
GCACTATCAAGTCCACTAGT+TGG 0.553890 4_1:-59511801 None:intergenic
CAAGGAATCATGATGTTGGT+AGG 0.561523 4_1:+59516176 Msa0560270:CDS
TTCAAAGAGAGAGACAAAAT+GGG 0.562742 4_1:+59515910 Msa0560270:CDS
TAGTTACATCACTGGTGAAG+AGG 0.565625 4_1:+59516349 Msa0560270:CDS
TTTCTTGATGAACCAACTAG+TGG 0.565982 4_1:+59511789 Msa0560270:CDS
TTGGGAGACACCGCCATACA+AGG 0.567871 4_1:-59516521 None:intergenic
ATTGTAACCAATAAAACGAA+TGG 0.575607 4_1:-59515981 None:intergenic
TTCAGTACTAGGTTGATGGA+TGG 0.578161 4_1:-59511898 None:intergenic
GGGTGTTAAAGGCATAAGTG+GGG 0.578959 4_1:+59511710 Msa0560270:CDS
GCTATAACTTATTACCTCCC+TGG 0.579983 4_1:+59516014 Msa0560270:CDS
GCGACCAACACAAGAATTGG+AGG 0.580978 4_1:+59511684 Msa0560270:CDS
GGTACAAATAGTTACATCAC+TGG 0.582323 4_1:+59516341 Msa0560270:CDS
GGAATCATGATGTTGGTAGG+AGG 0.583154 4_1:+59516179 Msa0560270:CDS
AGAACTGTCTTATGGAACTT+CGG 0.585206 4_1:+59511421 Msa0560270:five_prime_UTR
CAACACAAGAATTGGAGGGT+GGG 0.589300 4_1:+59511689 Msa0560270:CDS
GAATCATGATGTTGGTAGGA+GGG 0.592327 4_1:+59516180 Msa0560270:CDS
CAATACAACGATACATGTTG+TGG 0.597399 4_1:+59516541 Msa0560270:CDS
ATCATAAAGATGGAATTCAA+AGG 0.598593 4_1:+59511862 Msa0560270:CDS
TTTACTTAAAACTATAAACA+AGG 0.600618 4_1:+59513456 Msa0560270:CDS
GTTCCTAACCTCACAAGCAG+TGG 0.604347 4_1:-59511988 None:intergenic
TTGTTCAAGAATGAGTATGA+AGG 0.604889 4_1:+59516290 Msa0560270:CDS
AATTCAAGGAATCATGATGT+TGG 0.607399 4_1:+59516172 Msa0560270:CDS
CACATCCTTTCTGTAGACCA+GGG 0.622946 4_1:-59516031 None:intergenic
ATCATTGTTACCTTGTATGG+CGG 0.627795 4_1:+59516511 Msa0560270:CDS
TGAAATGCAACATAGTGTAG+TGG 0.649693 4_1:-59516248 None:intergenic
CGACCAACACAAGAATTGGA+GGG 0.651238 4_1:+59511685 Msa0560270:CDS
CCAACACAAGAATTGGAGGG+TGG 0.654778 4_1:+59511688 Msa0560270:CDS
CTCAAACACAAGACAAACAG+GGG 0.662303 4_1:+59511373 Msa0560270:five_prime_UTR
GCTCAAACACAAGACAAACA+GGG 0.683103 4_1:+59511372 Msa0560270:five_prime_UTR
AATGGCTTAGGAATTTCATG+TGG 0.696679 4_1:-59516215 None:intergenic
GGTGTTAAAGGCATAAGTGG+GGG 0.724955 4_1:+59511711 Msa0560270:CDS
ATCCTTTCTGTAGACCAGGG+AGG 0.743614 4_1:-59516028 None:intergenic
TACCTGAAGACAGAAGACAG+AGG 0.831496 4_1:-59511941 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATATTATAATTAA+CGG + chr4_1:59515454-59515473 Msa0560270:intron 0.0%
!!! CTTAGTTTTTTTTTTTTTTT+TGG - chr4_1:59511470-59511489 None:intergenic 10.0%
!! ATATGATAAATATTAAGTAT+TGG + chr4_1:59512508-59512527 Msa0560270:intron 10.0%
!! TATGATAAATATTAAGTATT+GGG + chr4_1:59512509-59512528 Msa0560270:intron 10.0%
!!! TATTATATTTAACTTATCTT+TGG - chr4_1:59512590-59512609 None:intergenic 10.0%
!! CATTAATCTAATATAAAATA+AGG - chr4_1:59513106-59513125 None:intergenic 10.0%
!! CAAATATAGTAATATTATAT+TGG + chr4_1:59514413-59514432 Msa0560270:intron 10.0%
!! CTAAAATATCAAATTTAAAA+GGG - chr4_1:59514541-59514560 None:intergenic 10.0%
!!! TCTAAAATATCAAATTTAAA+AGG - chr4_1:59514542-59514561 None:intergenic 10.0%
!!! ATCTTATTAGTATAATTTTC+AGG + chr4_1:59511341-59511360 Msa0560270:five_prime_UTR 15.0%
!!! TCTTATTAGTATAATTTTCA+GGG + chr4_1:59511342-59511361 Msa0560270:five_prime_UTR 15.0%
!!! ATTTTAGTTGTATTACTATA+GGG - chr4_1:59512271-59512290 None:intergenic 15.0%
!!! CATTTTCTTAAAGAAATAAT+AGG + chr4_1:59512414-59512433 Msa0560270:intron 15.0%
!!! ATGATAAATATTAAGTATTG+GGG + chr4_1:59512510-59512529 Msa0560270:intron 15.0%
!!! AACATATGTTTTGATTTATA+TGG + chr4_1:59512616-59512635 Msa0560270:intron 15.0%
!! TTTACTTAAAACTATAAACA+AGG + chr4_1:59513456-59513475 Msa0560270:CDS 15.0%
!!! TACTATTTTTTTTACTATGT+AGG - chr4_1:59513586-59513605 None:intergenic 15.0%
!!! ATTTTTCTTTTCATTATTTC+AGG + chr4_1:59514124-59514143 Msa0560270:intron 15.0%
!! CAGGTTTAAATATAAATTAT+TGG - chr4_1:59514566-59514585 None:intergenic 15.0%
!! CAATAATTTATATTTAAACC+TGG + chr4_1:59514564-59514583 Msa0560270:intron 15.0%
!! AATTTATACTTCTTTGAATT+TGG - chr4_1:59514645-59514664 None:intergenic 15.0%
!! TGAATATATAGTTTCTATTA+TGG + chr4_1:59514877-59514896 Msa0560270:intron 15.0%
!!! AATTATAAGAATTTACCTTT+TGG + chr4_1:59515596-59515615 Msa0560270:intron 15.0%
!! TAAATCTACTAATTATTTGT+AGG + chr4_1:59515884-59515903 Msa0560270:intron 15.0%
!! TATTATCAAAATTACAGAAA+AGG + chr4_1:59516472-59516491 Msa0560270:CDS 15.0%
!! ATTCTTTCATTAATCTATGT+AGG + chr4_1:59511509-59511528 Msa0560270:intron 20.0%
!!! ATTCATTAGTCTCAAAAAAT+GGG - chr4_1:59512017-59512036 None:intergenic 20.0%
!!! TATTCATTAGTCTCAAAAAA+TGG - chr4_1:59512018-59512037 None:intergenic 20.0%
!!! GATTTTAGTTGTATTACTAT+AGG - chr4_1:59512272-59512291 None:intergenic 20.0%
!! AAACAAAACACATAAATTGA+AGG + chr4_1:59512389-59512408 Msa0560270:intron 20.0%
!! ATTGTAGCAATAAATTATCT+TGG + chr4_1:59512448-59512467 Msa0560270:intron 20.0%
!! TGAATATGCAAGTTTATAAA+GGG - chr4_1:59512665-59512684 None:intergenic 20.0%
!! AGAGAAAAAAAAAAAGGATT+TGG + chr4_1:59514261-59514280 Msa0560270:intron 20.0%
!!! AAATTTCCTTTATCCAATTT+TGG + chr4_1:59514660-59514679 Msa0560270:intron 20.0%
!! CACAAATATAATTCATATGT+GGG - chr4_1:59515083-59515102 None:intergenic 20.0%
!!! TCTCTTTTCTTTTCTTTTTT+TGG + chr4_1:59515179-59515198 Msa0560270:intron 20.0%
!! ATATTGTATATTATATGCAG+AGG - chr4_1:59515277-59515296 None:intergenic 20.0%
!! ACACATAAATACATTCTTAA+CGG + chr4_1:59515549-59515568 Msa0560270:intron 20.0%
!! AAAACAAAAGGTAAATTCTT+AGG - chr4_1:59515784-59515803 None:intergenic 20.0%
!! AATTAGAGACAAAAAACAAA+AGG - chr4_1:59515796-59515815 None:intergenic 20.0%
!! ATTGTTCCTAATTATGTAAT+GGG + chr4_1:59516131-59516150 Msa0560270:CDS 20.0%
!! TTTCATTCATATGTATTTGA+AGG + chr4_1:59516266-59516285 Msa0560270:CDS 20.0%
!! CTAAGATTTCCTATTAAAAA+CGG + chr4_1:59516314-59516333 Msa0560270:CDS 20.0%
!!! CTGTAATTTTGATAATAACA+AGG - chr4_1:59516469-59516488 None:intergenic 20.0%
! TGAGTTTACAATCAAAGAAA+TGG + chr4_1:59511650-59511669 Msa0560270:CDS 25.0%
! GAGTTTACAATCAAAGAAAT+GGG + chr4_1:59511651-59511670 Msa0560270:CDS 25.0%
! ATCATAAAGATGGAATTCAA+AGG + chr4_1:59511862-59511881 Msa0560270:CDS 25.0%
! ATGAATATGCACGATTAATT+TGG + chr4_1:59512031-59512050 Msa0560270:intron 25.0%
! AAAAAAAAAGTGGTCTAAGT+TGG - chr4_1:59512075-59512094 None:intergenic 25.0%
! TCTAATGGTGAAAAAAAAAG+TGG - chr4_1:59512085-59512104 None:intergenic 25.0%
!! ATGTGTATTGACAAATCTAA+TGG - chr4_1:59512100-59512119 None:intergenic 25.0%
! TTAAAGAAATAATAGGTGTG+AGG + chr4_1:59512421-59512440 Msa0560270:intron 25.0%
!!! AATATTAAGTATTGGGGATT+TGG + chr4_1:59512516-59512535 Msa0560270:intron 25.0%
! GTGAATATGCAAGTTTATAA+AGG - chr4_1:59512666-59512685 None:intergenic 25.0%
! TAACCGCTTATATACAAAAA+CGG - chr4_1:59513205-59513224 None:intergenic 25.0%
!!! ATGTAGTTTTTTGCTTTGAA+TGG + chr4_1:59513397-59513416 Msa0560270:intron 25.0%
!!! GTTTTAAGTAAATGATCAGA+TGG - chr4_1:59513448-59513467 None:intergenic 25.0%
!!! TATAAACAAGGATTTTGATC+AGG + chr4_1:59513468-59513487 Msa0560270:CDS 25.0%
! TTATTTATGTTGCATTGAAG+AGG - chr4_1:59513546-59513565 None:intergenic 25.0%
! TTATTTCAAGATATTGAGAC+AGG + chr4_1:59513608-59513627 Msa0560270:intron 25.0%
! AGTCGTTGTATTATCTAATA+AGG + chr4_1:59513727-59513746 Msa0560270:intron 25.0%
!! AATGCTTAGTTCTTATTGAA+CGG + chr4_1:59513894-59513913 Msa0560270:CDS 25.0%
! CTTAGTCATATATGTTACAT+TGG + chr4_1:59513961-59513980 Msa0560270:CDS 25.0%
!! TTGATAACTAGTTAAAACCT+AGG + chr4_1:59514056-59514075 Msa0560270:intron 25.0%
! ATTAAAATCAAAGTCTTCCT+AGG - chr4_1:59514076-59514095 None:intergenic 25.0%
!!! TCTCTCTCTAGAATAATTTT+TGG - chr4_1:59514242-59514261 None:intergenic 25.0%
! AGAGAGAGAGAAAAAAAAAA+AGG + chr4_1:59514255-59514274 Msa0560270:intron 25.0%
!! GATAACTTTTAGATTAAGAC+CGG + chr4_1:59514340-59514359 Msa0560270:intron 25.0%
!!! CTTTTTTTGATTTCCTTAAC+CGG + chr4_1:59514494-59514513 Msa0560270:intron 25.0%
! CCACAAATATAATTCATATG+TGG - chr4_1:59515084-59515103 None:intergenic 25.0%
! CCACATATGAATTATATTTG+TGG + chr4_1:59515081-59515100 Msa0560270:intron 25.0%
!!! CAAACAATTGATAACGTAAT+GGG - chr4_1:59515482-59515501 None:intergenic 25.0%
!!! ACAAACAATTGATAACGTAA+TGG - chr4_1:59515483-59515502 None:intergenic 25.0%
! TTATAATTCTCTCACAATGT+TGG - chr4_1:59515584-59515603 None:intergenic 25.0%
! ACAATGATACTCATGTAATT+TGG + chr4_1:59515625-59515644 Msa0560270:intron 25.0%
!! TGTTAAACAAATTTTGCTAG+AGG + chr4_1:59515725-59515744 Msa0560270:intron 25.0%
! AAAACTTGTCAAGATTAAAG+AGG - chr4_1:59515851-59515870 None:intergenic 25.0%
!! ATCAATTCCATTCGTTTTAT+TGG + chr4_1:59515974-59515993 Msa0560270:CDS 25.0%
! ATTGTAACCAATAAAACGAA+TGG - chr4_1:59515984-59516003 None:intergenic 25.0%
! CATTGTTCCTAATTATGTAA+TGG + chr4_1:59516130-59516149 Msa0560270:CDS 25.0%
! ATGATTCCCATTACATAATT+AGG - chr4_1:59516140-59516159 None:intergenic 25.0%
! TAACATGAGTTACTCAAAAT+GGG + chr4_1:59516394-59516413 Msa0560270:CDS 25.0%
AACAGTTAAGGTTGTCAATA+AGG - chr4_1:59511556-59511575 None:intergenic 30.0%
ATTACCTAACACAATGTCTA+AGG + chr4_1:59511608-59511627 Msa0560270:exon 30.0%
TCATCAAGAAAAAGAAGTCT+TGG - chr4_1:59511780-59511799 None:intergenic 30.0%
! GCTACTTTAGATCATAAAGA+TGG + chr4_1:59511852-59511871 Msa0560270:CDS 30.0%
! TTGATGGATGGAAGTAATAA+TGG - chr4_1:59511889-59511908 None:intergenic 30.0%
AGTTGAAAAACTTCAGTACT+AGG - chr4_1:59511912-59511931 None:intergenic 30.0%
AAAGGAAAAAATCAAGTGCA+GGG - chr4_1:59512139-59512158 None:intergenic 30.0%
TTGCAACTAAAATCACAAAG+AGG + chr4_1:59512244-59512263 Msa0560270:intron 30.0%
! ATTTTTATCCACTCGATCTT+AGG - chr4_1:59512560-59512579 None:intergenic 30.0%
TTGTGCATAGATGAATCTAA+TGG + chr4_1:59512884-59512903 Msa0560270:intron 30.0%
AATCTAATGGTGAGAAATTG+TGG + chr4_1:59512897-59512916 Msa0560270:intron 30.0%
TGTAATAATAGTCCTCTGAA+GGG - chr4_1:59512965-59512984 None:intergenic 30.0%
ATGTAATAATAGTCCTCTGA+AGG - chr4_1:59512966-59512985 None:intergenic 30.0%
!! TGACCGTTTTTGTATATAAG+CGG + chr4_1:59513199-59513218 Msa0560270:intron 30.0%
ATGATTTATATGAGCTCACA+AGG - chr4_1:59513679-59513698 None:intergenic 30.0%
ATCTAATAAGGTAGAGCATA+TGG + chr4_1:59513739-59513758 Msa0560270:intron 30.0%
ATGTTGAACAATTTAACCTC+AGG - chr4_1:59513779-59513798 None:intergenic 30.0%
TGCAAGTTATGACTCAATTA+AGG + chr4_1:59514018-59514037 Msa0560270:CDS 30.0%
! TTTTCATTATTTCAGGATCG+AGG + chr4_1:59514131-59514150 Msa0560270:intron 30.0%
TCACTTCTTTCATTTATCTC+TGG + chr4_1:59514155-59514174 Msa0560270:CDS 30.0%
TTCTTAACTTTCATGAGCAT+TGG + chr4_1:59514179-59514198 Msa0560270:CDS 30.0%
ATGTGACCAAAATTGGATAA+AGG - chr4_1:59514669-59514688 None:intergenic 30.0%
TGATTGTATGTGACCAAAAT+TGG - chr4_1:59514676-59514695 None:intergenic 30.0%
TCATATGTCGCTATCAATTT+CGG + chr4_1:59514693-59514712 Msa0560270:intron 30.0%
CGCTAATATGATTCATATGT+GGG - chr4_1:59515014-59515033 None:intergenic 30.0%
CCACATATGAATCATATTAG+CGG + chr4_1:59515012-59515031 Msa0560270:intron 30.0%
!! AGAGGTTACACATTTTAATG+TGG + chr4_1:59515220-59515239 Msa0560270:intron 30.0%
!! ACATTTTAATGTGGAGAAGT+GGG + chr4_1:59515229-59515248 Msa0560270:intron 30.0%
TGTATATTATATGCAGAGGT+CGG - chr4_1:59515273-59515292 None:intergenic 30.0%
TATCATTGTGTTCATCCAAA+AGG - chr4_1:59515614-59515633 None:intergenic 30.0%
TGATACTCATGTAATTTGGT+TGG + chr4_1:59515629-59515648 Msa0560270:intron 30.0%
! ACACTCATTGATTGAATGAT+AGG - chr4_1:59515662-59515681 None:intergenic 30.0%
! TTTGAAGTTTGTTTGACTAC+CGG - chr4_1:59515754-59515773 None:intergenic 30.0%
AGTCAAACAAACTTCAAAGT+AGG + chr4_1:59515756-59515775 Msa0560270:intron 30.0%
TTTCAAAGAGAGAGACAAAA+TGG + chr4_1:59515909-59515928 Msa0560270:CDS 30.0%
TTCAAAGAGAGAGACAAAAT+GGG + chr4_1:59515910-59515929 Msa0560270:CDS 30.0%
! TTTATTTGCTAGCCTAATGT+TGG + chr4_1:59516079-59516098 Msa0560270:CDS 30.0%
! TATGTAATGGGAATCATAAC+TGG + chr4_1:59516143-59516162 Msa0560270:CDS 30.0%
AATTCAAGGAATCATGATGT+TGG + chr4_1:59516172-59516191 Msa0560270:CDS 30.0%
! ATGAAATTCCTAAGCCATTT+TGG + chr4_1:59516219-59516238 Msa0560270:CDS 30.0%
TTGTTCAAGAATGAGTATGA+AGG + chr4_1:59516290-59516309 Msa0560270:CDS 30.0%
TTTCCTATTAAAAACGGACA+AGG + chr4_1:59516320-59516339 Msa0560270:CDS 30.0%
GTAACATGAGTTACTCAAAA+TGG + chr4_1:59516393-59516412 Msa0560270:CDS 30.0%
! TTGATCTTGCAATTTTGCTT+GGG + chr4_1:59516417-59516436 Msa0560270:CDS 30.0%
ACAACATGTATCGTTGTATT+GGG - chr4_1:59516542-59516561 None:intergenic 30.0%
! ATGATGCTACTCCTTTTAAT+GGG + chr4_1:59516570-59516589 Msa0560270:CDS 30.0%
CACAAACAAGAACTGTCTTA+TGG + chr4_1:59511413-59511432 Msa0560270:five_prime_UTR 35.0%
AGAACTGTCTTATGGAACTT+CGG + chr4_1:59511421-59511440 Msa0560270:five_prime_UTR 35.0%
TCTTCCTTAGACATTGTGTT+AGG - chr4_1:59511615-59511634 None:intergenic 35.0%
TTTCTTGATGAACCAACTAG+TGG + chr4_1:59511789-59511808 Msa0560270:CDS 35.0%
! AAACTTCAGTACTAGGTTGA+TGG - chr4_1:59511905-59511924 None:intergenic 35.0%
TCAGGTAGAACAGTTTACTT+TGG + chr4_1:59511957-59511976 Msa0560270:CDS 35.0%
ATTTGGATCACTTGACGTAT+TGG + chr4_1:59512048-59512067 Msa0560270:intron 35.0%
AAGGAAAAAATCAAGTGCAG+GGG - chr4_1:59512138-59512157 None:intergenic 35.0%
GAAAGGAAAAAATCAAGTGC+AGG - chr4_1:59512140-59512159 None:intergenic 35.0%
TGAGAAAACAGGAAGAGAAA+AGG + chr4_1:59512834-59512853 Msa0560270:intron 35.0%
GAGAAAACAGGAAGAGAAAA+GGG + chr4_1:59512835-59512854 Msa0560270:intron 35.0%
AGAAAACAGGAAGAGAAAAG+GGG + chr4_1:59512836-59512855 Msa0560270:intron 35.0%
AGTTGAAAAACTGCAGTACT+AGG - chr4_1:59513000-59513019 None:intergenic 35.0%
TCAGGTAGAACAGTTTACTT+TGG + chr4_1:59511957-59511976 Msa0560270:CDS 35.0%
!! TGATCAGATGGATTTTGTTG+AGG - chr4_1:59513436-59513455 None:intergenic 35.0%
GAGGAATGAAATCATGAAGA+AGG - chr4_1:59513527-59513546 None:intergenic 35.0%
TCAAGATATTGAGACAGGAT+TGG + chr4_1:59513613-59513632 Msa0560270:intron 35.0%
! CGACTTCATTTTGAACATCT+TGG - chr4_1:59513712-59513731 None:intergenic 35.0%
TCAATGGATCACAAGAAGAA+AGG + chr4_1:59513851-59513870 Msa0560270:CDS 35.0%
TTCGTGATCTAGGCTATTAT+TGG + chr4_1:59513933-59513952 Msa0560270:CDS 35.0%
!! GTTACATTGGCTCTAAGTTT+AGG + chr4_1:59513974-59513993 Msa0560270:CDS 35.0%
TGCACCCAAATCATAGTAAA+CGG - chr4_1:59514002-59514021 None:intergenic 35.0%
!! TTAACTTTCATGAGCATTGG+TGG + chr4_1:59514182-59514201 Msa0560270:CDS 35.0%
TTCATGTCTTCCACAAATGA+AGG - chr4_1:59514212-59514231 None:intergenic 35.0%
TTCATTTGTGGAAGACATGA+AGG + chr4_1:59514211-59514230 Msa0560270:CDS 35.0%
TGTGTGAGATTTCTCACTAA+AGG - chr4_1:59514291-59514310 None:intergenic 35.0%
! TAACATTACCTTGAGTTGTC+CGG - chr4_1:59514362-59514381 None:intergenic 35.0%
CAACTCAAGGTAATGTTAAC+CGG + chr4_1:59514364-59514383 Msa0560270:intron 35.0%
!! GGTTTGATTGGTTGATAGAA+AGG - chr4_1:59514722-59514741 None:intergenic 35.0%
! ACTAGTTTCGTGTCTAGTAT+TGG + chr4_1:59514837-59514856 Msa0560270:intron 35.0%
!! CTAGTATTGGTCTTTGGTTT+CGG + chr4_1:59514850-59514869 Msa0560270:intron 35.0%
GTGACATATATTATCACCGA+CGG + chr4_1:59514899-59514918 Msa0560270:intron 35.0%
CCGCTAATATGATTCATATG+TGG - chr4_1:59515015-59515034 None:intergenic 35.0%
!! CACATTTTAATGTGGAGAAG+TGG + chr4_1:59515228-59515247 Msa0560270:intron 35.0%
!! CATTTTAATGTGGAGAAGTG+GGG + chr4_1:59515230-59515249 Msa0560270:intron 35.0%
TATATTATATGCAGAGGTCG+GGG - chr4_1:59515271-59515290 None:intergenic 35.0%
GTATATTATATGCAGAGGTC+GGG - chr4_1:59515272-59515291 None:intergenic 35.0%
TACCAACTGAGATAAGCTTA+CGG + chr4_1:59515300-59515319 Msa0560270:intron 35.0%
!! ATAGTAAGCTTTAGCTTGAG+AGG + chr4_1:59515384-59515403 Msa0560270:intron 35.0%
!! TAGTAAGCTTTAGCTTGAGA+GGG + chr4_1:59515385-59515404 Msa0560270:intron 35.0%
! CAAATTTTGCTAGAGGATAC+CGG + chr4_1:59515732-59515751 Msa0560270:intron 35.0%
GAGTGATTGCATATGTGATT+GGG + chr4_1:59515940-59515959 Msa0560270:CDS 35.0%
AGGTAATAAGTTATAGCTGC+TGG - chr4_1:59516011-59516030 None:intergenic 35.0%
TAAGACTTTCCACCAACATT+AGG - chr4_1:59516094-59516113 None:intergenic 35.0%
AATGGCTTAGGAATTTCATG+TGG - chr4_1:59516218-59516237 None:intergenic 35.0%
!! AAATTCCTAAGCCATTTTGG+AGG + chr4_1:59516222-59516241 Msa0560270:CDS 35.0%
TGAAATGCAACATAGTGTAG+TGG - chr4_1:59516251-59516270 None:intergenic 35.0%
!! GTACCTTGTCCGTTTTTAAT+AGG - chr4_1:59516326-59516345 None:intergenic 35.0%
GGTACAAATAGTTACATCAC+TGG + chr4_1:59516341-59516360 Msa0560270:CDS 35.0%
!!! AAGAGGTTTTGAGAGATACT+TGG + chr4_1:59516366-59516385 Msa0560270:CDS 35.0%
! GTTGATCTTGCAATTTTGCT+TGG + chr4_1:59516416-59516435 Msa0560270:CDS 35.0%
GAAAAGGTGAAACCTATTGT+TGG + chr4_1:59516488-59516507 Msa0560270:CDS 35.0%
GGTAACAATGATCCAACAAT+AGG - chr4_1:59516503-59516522 None:intergenic 35.0%
TGGATCATTGTTACCTTGTA+TGG + chr4_1:59516508-59516527 Msa0560270:CDS 35.0%
ATCATTGTTACCTTGTATGG+CGG + chr4_1:59516511-59516530 Msa0560270:CDS 35.0%
CACAACATGTATCGTTGTAT+TGG - chr4_1:59516543-59516562 None:intergenic 35.0%
CAATACAACGATACATGTTG+TGG + chr4_1:59516541-59516560 Msa0560270:CDS 35.0%
! GATGATGCTACTCCTTTTAA+TGG + chr4_1:59516569-59516588 Msa0560270:CDS 35.0%
AGCTCAAACACAAGACAAAC+AGG + chr4_1:59511371-59511390 Msa0560270:five_prime_UTR 40.0%
GCTCAAACACAAGACAAACA+GGG + chr4_1:59511372-59511391 Msa0560270:five_prime_UTR 40.0%
CTCAAACACAAGACAAACAG+GGG + chr4_1:59511373-59511392 Msa0560270:five_prime_UTR 40.0%
ACAGGGGAAATTCTGATCAA+TGG + chr4_1:59511389-59511408 Msa0560270:five_prime_UTR 40.0%
CACTGCTTCTCTAACAGTTA+AGG - chr4_1:59511568-59511587 None:intergenic 40.0%
AAAGAAGTCTTGGACGTGTT+AGG - chr4_1:59511770-59511789 None:intergenic 40.0%
!! TTCAGTACTAGGTTGATGGA+TGG - chr4_1:59511901-59511920 None:intergenic 40.0%
AGGAAAAAATCAAGTGCAGG+GGG - chr4_1:59512137-59512156 None:intergenic 40.0%
GAGAAAACTGGAAGAGAGAA+AGG - chr4_1:59512157-59512176 None:intergenic 40.0%
AGAGGTCATGGTTAGTGTAT+GGG - chr4_1:59512189-59512208 None:intergenic 40.0%
TTTGTACAGTGAAGTGAGAG+AGG - chr4_1:59512207-59512226 None:intergenic 40.0%
AACAGTCATCAACAGATCCA+TGG + chr4_1:59512358-59512377 Msa0560270:intron 40.0%
!!! GTTTTGTTTGTAGACCTCCA+TGG - chr4_1:59512378-59512397 None:intergenic 40.0%
ATTGGGGATTTGGAAAGAGA+AGG + chr4_1:59512526-59512545 Msa0560270:intron 40.0%
ATTTCTCGCAAGCAACAATG+TGG + chr4_1:59512717-59512736 Msa0560270:intron 40.0%
TCTCACTTCACAATACAAGC+TGG - chr4_1:59512784-59512803 None:intergenic 40.0%
CTTGTATTGTGAAGTGAGAG+AGG + chr4_1:59512785-59512804 Msa0560270:intron 40.0%
GAAAACAGGAAGAGAAAAGG+GGG + chr4_1:59512837-59512856 Msa0560270:intron 40.0%
AAGGGGGAAAAAATCAAGTG+CGG + chr4_1:59512853-59512872 Msa0560270:intron 40.0%
TGAGAAATTGTGGTCCAAGT+TGG + chr4_1:59512907-59512926 Msa0560270:intron 40.0%
! ATGGAAGTATAGGTCCAACT+TGG - chr4_1:59512924-59512943 None:intergenic 40.0%
AAGTTGGACCTATACTTCCA+TGG + chr4_1:59512923-59512942 Msa0560270:intron 40.0%
AGTTGGACCTATACTTCCAT+GGG + chr4_1:59512924-59512943 Msa0560270:intron 40.0%
TTCCATGGGTGCAAACTAAT+TGG + chr4_1:59512938-59512957 Msa0560270:intron 40.0%
AAACTAATTGGACCCTTCAG+AGG + chr4_1:59512950-59512969 Msa0560270:intron 40.0%
! AAACTGCAGTACTAGGTTGA+TGG - chr4_1:59512993-59513012 None:intergenic 40.0%
!! TCAGATGGATTTTGTTGAGG+AGG - chr4_1:59513433-59513452 None:intergenic 40.0%
! ATATTGAGACAGGATTGGCA+GGG + chr4_1:59513618-59513637 Msa0560270:intron 40.0%
ATTTAACCTCAGGCATGATC+TGG - chr4_1:59513769-59513788 None:intergenic 40.0%
! TTTTCAGCACACTAGCTCAA+TGG + chr4_1:59513835-59513854 Msa0560270:intron 40.0%
GTGAACATGTTTCGTGATCT+AGG + chr4_1:59513923-59513942 Msa0560270:CDS 40.0%
! AGGCACCGTTTACTATGATT+TGG + chr4_1:59513994-59514013 Msa0560270:CDS 40.0%
GGCACCGTTTACTATGATTT+GGG + chr4_1:59513995-59514014 Msa0560270:CDS 40.0%
!! TGGTGGATTTCCTTCATTTG+TGG + chr4_1:59514199-59514218 Msa0560270:CDS 40.0%
!! ATGTGTTGACTACGTAAGAC+TGG - chr4_1:59514319-59514338 None:intergenic 40.0%
CTATTACGATGATCTCCTTG+TGG - chr4_1:59514774-59514793 None:intergenic 40.0%
!! TCGTGTCTAGTATTGGTCTT+TGG + chr4_1:59514844-59514863 Msa0560270:intron 40.0%
GTGATGACTCTTCACACATA+TGG + chr4_1:59514930-59514949 Msa0560270:intron 40.0%
ACTAGACTAATCGTTGTCCA+AGG - chr4_1:59515050-59515069 None:intergenic 40.0%
!! TTGGACAACGATTAGTCTAG+TGG + chr4_1:59515049-59515068 Msa0560270:intron 40.0%
!! TTTTTGGTCAAGTAGCCTAG+TGG + chr4_1:59515195-59515214 Msa0560270:intron 40.0%
ACCAACTGAGATAAGCTTAC+GGG + chr4_1:59515301-59515320 Msa0560270:intron 40.0%
GAGAGACAAAATGGGCATTA+TGG + chr4_1:59515918-59515937 Msa0560270:CDS 40.0%
GGAGTGATTGCATATGTGAT+TGG + chr4_1:59515939-59515958 Msa0560270:CDS 40.0%
GCTATAACTTATTACCTCCC+TGG + chr4_1:59516014-59516033 Msa0560270:CDS 40.0%
! ATTTGCTAGCCTAATGTTGG+TGG + chr4_1:59516082-59516101 Msa0560270:CDS 40.0%
! ATAACTGGTGCTGGAATTCA+AGG + chr4_1:59516158-59516177 Msa0560270:CDS 40.0%
CAAGGAATCATGATGTTGGT+AGG + chr4_1:59516176-59516195 Msa0560270:CDS 40.0%
! GAATCATGATGTTGGTAGGA+GGG + chr4_1:59516180-59516199 Msa0560270:CDS 40.0%
!! TGTAGTGGATACCTCCAAAA+TGG - chr4_1:59516236-59516255 None:intergenic 40.0%
TAGTTACATCACTGGTGAAG+AGG + chr4_1:59516349-59516368 Msa0560270:CDS 40.0%
GATGCGACCAACACAAGAAT+TGG + chr4_1:59511681-59511700 Msa0560270:CDS 45.0%
CGACCAACACAAGAATTGGA+GGG + chr4_1:59511685-59511704 Msa0560270:CDS 45.0%
CAACACAAGAATTGGAGGGT+GGG + chr4_1:59511689-59511708 Msa0560270:CDS 45.0%
AACACAAGAATTGGAGGGTG+GGG + chr4_1:59511690-59511709 Msa0560270:CDS 45.0%
! TGGGGTGTTAAAGGCATAAG+TGG + chr4_1:59511708-59511727 Msa0560270:CDS 45.0%
! GGGGTGTTAAAGGCATAAGT+GGG + chr4_1:59511709-59511728 Msa0560270:CDS 45.0%
! GGGTGTTAAAGGCATAAGTG+GGG + chr4_1:59511710-59511729 Msa0560270:CDS 45.0%
! GGTGTTAAAGGCATAAGTGG+GGG + chr4_1:59511711-59511730 Msa0560270:CDS 45.0%
GCACTATCAAGTCCACTAGT+TGG - chr4_1:59511804-59511823 None:intergenic 45.0%
AACCTCTGTCTTCTGTCTTC+AGG + chr4_1:59511939-59511958 Msa0560270:CDS 45.0%
TACCTGAAGACAGAAGACAG+AGG - chr4_1:59511944-59511963 None:intergenic 45.0%
ATGGTTAGTGTATGGGTTCC+TGG - chr4_1:59512182-59512201 None:intergenic 45.0%
GAGAGGTCATGGTTAGTGTA+TGG - chr4_1:59512190-59512209 None:intergenic 45.0%
AGTCATCAACAGATCCATGG+AGG + chr4_1:59512361-59512380 Msa0560270:intron 45.0%
TGGATGAACCTAAGATCGAG+TGG + chr4_1:59512549-59512568 Msa0560270:intron 45.0%
GTATTGTGAAGTGAGAGAGG+TGG + chr4_1:59512788-59512807 Msa0560270:intron 45.0%
! CTCTTCCTGTTTTCTCAACC+AGG - chr4_1:59512831-59512850 None:intergenic 45.0%
AGGGGGAAAAAATCAAGTGC+GGG + chr4_1:59512854-59512873 Msa0560270:intron 45.0%
! GTTTGCACCCATGGAAGTAT+AGG - chr4_1:59512934-59512953 None:intergenic 45.0%
!! GTCCAATTAGTTTGCACCCA+TGG - chr4_1:59512943-59512962 None:intergenic 45.0%
!! TGCAGTACTAGGTTGATGGA+TGG - chr4_1:59512989-59513008 None:intergenic 45.0%
AACCTCTGTCTTCTGTCTTC+AGG + chr4_1:59511939-59511958 Msa0560270:CDS 45.0%
TACCTGAAGACAGAAGACAG+AGG - chr4_1:59511944-59511963 None:intergenic 45.0%
! GATATTGAGACAGGATTGGC+AGG + chr4_1:59513617-59513636 Msa0560270:intron 45.0%
GATTAAGACCGGACAACTCA+AGG + chr4_1:59514351-59514370 Msa0560270:intron 45.0%
TCATGCAAGTCCTTGGATTG+AGG - chr4_1:59514594-59514613 None:intergenic 45.0%
CACACATTCATGCAAGTCCT+TGG - chr4_1:59514601-59514620 None:intergenic 45.0%
GATGGTCGTAGTGGTTTGAT+TGG - chr4_1:59514734-59514753 None:intergenic 45.0%
ATGATCTCCTTGTGGTAGGT+TGG - chr4_1:59514766-59514785 None:intergenic 45.0%
TACGATGATCTCCTTGTGGT+AGG - chr4_1:59514770-59514789 None:intergenic 45.0%
TAGTGACCTCACATGCACAT+TGG + chr4_1:59514791-59514810 Msa0560270:intron 45.0%
GTCATCACTCGAATAACCGT+CGG - chr4_1:59514918-59514937 None:intergenic 45.0%
ACCATCGGATTGATCGTTGT+CGG - chr4_1:59514984-59515003 None:intergenic 45.0%
!! TATGTGGGAAGTGTCACCAT+CGG - chr4_1:59514999-59515018 None:intergenic 45.0%
! AGCGGTGACTTTTCTTTCCT+TGG + chr4_1:59515030-59515049 Msa0560270:intron 45.0%
ACCACCGAATTGATTGTCGT+CGG - chr4_1:59515123-59515142 None:intergenic 45.0%
ATGTGTAACCTCTAGCCACT+AGG - chr4_1:59515213-59515232 None:intergenic 45.0%
CCAACTGAGATAAGCTTACG+GGG + chr4_1:59515302-59515321 Msa0560270:intron 45.0%
CACATCCTTTCTGTAGACCA+GGG - chr4_1:59516034-59516053 None:intergenic 45.0%
TCACATCCTTTCTGTAGACC+AGG - chr4_1:59516035-59516054 None:intergenic 45.0%
ATGGGAATCATAACTGGTGC+TGG + chr4_1:59516149-59516168 Msa0560270:CDS 45.0%
! GGAATCATGATGTTGGTAGG+AGG + chr4_1:59516179-59516198 Msa0560270:CDS 45.0%
GGATACCTCCAAAATGGCTT+AGG - chr4_1:59516230-59516249 None:intergenic 45.0%
!! ACTCCTTTTAATGGGCATGC+AGG + chr4_1:59516578-59516597 Msa0560270:CDS 45.0%
!! CTCCTTTTAATGGGCATGCA+GGG + chr4_1:59516579-59516598 Msa0560270:CDS 45.0%
!! TCCTTTTAATGGGCATGCAG+GGG + chr4_1:59516580-59516599 Msa0560270:CDS 45.0%
!! ATTAATCTAATATAAAATAA+GGG - chr4_1:59513105-59513124 None:intergenic 5.0%
GCGACCAACACAAGAATTGG+AGG + chr4_1:59511684-59511703 Msa0560270:CDS 50.0%
CCACCCTCCAATTCTTGTGT+TGG - chr4_1:59511691-59511710 None:intergenic 50.0%
CCAACACAAGAATTGGAGGG+TGG + chr4_1:59511688-59511707 Msa0560270:CDS 50.0%
! ATTGGAGGGTGGGGTGTTAA+AGG + chr4_1:59511699-59511718 Msa0560270:CDS 50.0%
GCATAAGTGGGGGTCAGAAA+AGG + chr4_1:59511721-59511740 Msa0560270:CDS 50.0%
CTTCCACTGCTTGTGAGGTT+AGG + chr4_1:59511985-59512004 Msa0560270:intron 50.0%
GTTCCTAACCTCACAAGCAG+TGG - chr4_1:59511991-59512010 None:intergenic 50.0%
! CTCTTCCAGTTTTCTCCACC+AGG + chr4_1:59512161-59512180 Msa0560270:intron 50.0%
GTTAGTGTATGGGTTCCTGG+TGG - chr4_1:59512179-59512198 None:intergenic 50.0%
CAGTGAAGTGAGAGAGGTCA+TGG - chr4_1:59512201-59512220 None:intergenic 50.0%
AGTATGTGCGTGTCTGTCGA+AGG - chr4_1:59512333-59512352 None:intergenic 50.0%
GGGGATTTGGAAAGAGAAGG+TGG + chr4_1:59512529-59512548 Msa0560270:intron 50.0%
TCTCGCAAGCAACAATGTGG+TGG + chr4_1:59512720-59512739 Msa0560270:intron 50.0%
GCAAGCAACAATGTGGTGGT+CGG + chr4_1:59512724-59512743 Msa0560270:intron 50.0%
GGTGGTCGGAACTCAAAACA+CGG + chr4_1:59512738-59512757 Msa0560270:intron 50.0%
TTGTGAAGTGAGAGAGGTGG+TGG + chr4_1:59512791-59512810 Msa0560270:intron 50.0%
! AGAGGTGGTGGTTGGTGTAT+GGG + chr4_1:59512803-59512822 Msa0560270:intron 50.0%
GGGTTCCTGGTTGAGAAAAC+AGG + chr4_1:59512823-59512842 Msa0560270:intron 50.0%
GGGAAAAAATCAAGTGCGGG+TGG + chr4_1:59512857-59512876 Msa0560270:intron 50.0%
ACTTGCTTCTGCTGCATGTG+AGG + chr4_1:59513068-59513087 Msa0560270:intron 50.0%
AATGTTAACCGGTGCCTCTG+AGG + chr4_1:59514375-59514394 Msa0560270:intron 50.0%
TTCCTTAACCAGTGCCTCAG+AGG - chr4_1:59514392-59514411 None:intergenic 50.0%
AGGGTGATGTTAACCGAGCA+GGG - chr4_1:59514522-59514541 None:intergenic 50.0%
AAGGGTGATGTTAACCGAGC+AGG - chr4_1:59514523-59514542 None:intergenic 50.0%
ACCTGGATTGCCTCAATCCA+AGG + chr4_1:59514581-59514600 Msa0560270:intron 50.0%
TCCTTGGATTGAGGCAATCC+AGG - chr4_1:59514585-59514604 None:intergenic 50.0%
TTTCGAGGAGATGGTCGTAG+TGG - chr4_1:59514743-59514762 None:intergenic 50.0%
!! GTAGGTTGGTTTCGAGGAGA+TGG - chr4_1:59514752-59514771 None:intergenic 50.0%
!! CTTGTGGTAGGTTGGTTTCG+AGG - chr4_1:59514758-59514777 None:intergenic 50.0%
CTCGAAACCAACCTACCACA+AGG + chr4_1:59514756-59514775 Msa0560270:intron 50.0%
GACACGAAACTAGTGTGTCG+AGG - chr4_1:59514831-59514850 None:intergenic 50.0%
TCGGATTGATCGTTGTCGGT+GGG - chr4_1:59514980-59514999 None:intergenic 50.0%
ATCGGATTGATCGTTGTCGG+TGG - chr4_1:59514981-59515000 None:intergenic 50.0%
ACCGACAACGATCAATCCGA+TGG + chr4_1:59514980-59514999 Msa0560270:intron 50.0%
AATTGATTGTCGTCGGTGGG+AGG - chr4_1:59515116-59515135 None:intergenic 50.0%
CCGAATTGATTGTCGTCGGT+GGG - chr4_1:59515119-59515138 None:intergenic 50.0%
CCCACCGACGACAATCAATT+CGG + chr4_1:59515116-59515135 Msa0560270:intron 50.0%
ACCGAATTGATTGTCGTCGG+TGG - chr4_1:59515120-59515139 None:intergenic 50.0%
ACCGACGACAATCAATTCGG+TGG + chr4_1:59515119-59515138 Msa0560270:intron 50.0%
TCAAGTAGCCTAGTGGCTAG+AGG + chr4_1:59515202-59515221 Msa0560270:intron 50.0%
CCCCGTAAGCTTATCTCAGT+TGG - chr4_1:59515305-59515324 None:intergenic 50.0%
TACCTCCCTGGTCTACAGAA+AGG + chr4_1:59516026-59516045 Msa0560270:CDS 50.0%
ATCCTTTCTGTAGACCAGGG+AGG - chr4_1:59516031-59516050 None:intergenic 50.0%
!! CCTTTTAATGGGCATGCAGG+GGG + chr4_1:59516581-59516600 Msa0560270:CDS 50.0%
ACCTGCTTCCACTGCTTGTG+AGG + chr4_1:59511980-59511999 Msa0560270:CDS 55.0%
ACCTCACAAGCAGTGGAAGC+AGG - chr4_1:59511984-59512003 None:intergenic 55.0%
GGGTTCCTGGTGGAGAAAAC+TGG - chr4_1:59512169-59512188 None:intergenic 55.0%
GGTCGGAACTCAAAACACGG+CGG + chr4_1:59512741-59512760 Msa0560270:intron 55.0%
ACTCAAAACACGGCGGAGGA+CGG + chr4_1:59512748-59512767 Msa0560270:intron 55.0%
! GAAGTGAGAGAGGTGGTGGT+TGG + chr4_1:59512795-59512814 Msa0560270:intron 55.0%
! GAGAGGTGGTGGTTGGTGTA+TGG + chr4_1:59512802-59512821 Msa0560270:intron 55.0%
! GTGGTTGGTGTATGGGTTCC+TGG + chr4_1:59512810-59512829 Msa0560270:intron 55.0%
GGCTTACCAGATCATGCCTG+AGG + chr4_1:59513760-59513779 Msa0560270:intron 55.0%
!! TGCCTCTGAGGCACTGGTTA+AGG + chr4_1:59514387-59514406 Msa0560270:intron 55.0%
ATGTTAACCGAGCAGGGCAC+CGG - chr4_1:59514516-59514535 None:intergenic 55.0%
GTGAGGCCAATGTGCATGTG+AGG - chr4_1:59514800-59514819 None:intergenic 55.0%
! ATGTGGAGAAGTGGGGTGTC+CGG + chr4_1:59515237-59515256 Msa0560270:intron 55.0%
TTGGGAGACACCGCCATACA+AGG - chr4_1:59516524-59516543 None:intergenic 55.0%
CCCCCTGCATGCCCATTAAA+AGG - chr4_1:59516584-59516603 None:intergenic 55.0%
CGGAACTCAAAACACGGCGG+AGG + chr4_1:59512744-59512763 Msa0560270:intron 60.0%
! GAGACAGGATTGGCAGGGAC+AGG + chr4_1:59513623-59513642 Msa0560270:intron 60.0%
! AACCAGTGCCTCAGAGGCAC+CGG - chr4_1:59514386-59514405 None:intergenic 60.0%
TCCTTAACCGGTGCCCTGCT+CGG + chr4_1:59514506-59514525 Msa0560270:intron 60.0%
! TGTGGAGAAGTGGGGTGTCC+GGG + chr4_1:59515238-59515257 Msa0560270:intron 60.0%
AACACGGCGGAGGACGGTTG+AGG + chr4_1:59512754-59512773 Msa0560270:intron 65.0%
ACACGGCGGAGGACGGTTGA+GGG + chr4_1:59512755-59512774 Msa0560270:intron 65.0%
!! AACCGGTGCCTCTGAGGCAC+TGG + chr4_1:59514381-59514400 Msa0560270:intron 65.0%
!! ACCGAGCAGGGCACCGGTTA+AGG - chr4_1:59514510-59514529 None:intergenic 65.0%
! GTGGAGAAGTGGGGTGTCCG+GGG + chr4_1:59515239-59515258 Msa0560270:intron 65.0%
AGAGGTCGGGGTTCGAACCC+CGG - chr4_1:59515259-59515278 None:intergenic 65.0%
TGGGCATGCAGGGGGCGAAC+CGG + chr4_1:59516589-59516608 Msa0560270:CDS 70.0%
CATGCAGGGGGCGAACCGGA+GGG + chr4_1:59516593-59516612 Msa0560270:CDS 70.0%
CGCTTCTCCCGCACACCCTC+CGG - chr4_1:59516611-59516630 None:intergenic 70.0%
GCATGCAGGGGGCGAACCGG+AGG + chr4_1:59516592-59516611 Msa0560270:CDS 75.0%
! GGGGCGAACCGGAGGGTGTG+CGG + chr4_1:59516600-59516619 Msa0560270:CDS 75.0%
! GGGCGAACCGGAGGGTGTGC+GGG + chr4_1:59516601-59516620 Msa0560270:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 59511324 59516649 59511324 ID=Msa0560270;Name=Msa0560270
chr4_1 mRNA 59511324 59516649 59511324 ID=Msa0560270-mRNA-1;Parent=Msa0560270;Name=Msa0560270-mRNA-1;_AED=0.13;_eAED=0.13;_QI=209|0.4|0.33|1|1|1|6|0|498
chr4_1 exon 59511324 59511442 59511324 ID=Msa0560270-mRNA-1:exon:18406;Parent=Msa0560270-mRNA-1
chr4_1 exon 59511531 59512001 59511531 ID=Msa0560270-mRNA-1:exon:18407;Parent=Msa0560270-mRNA-1
chr4_1 exon 59513403 59513489 59513403 ID=Msa0560270-mRNA-1:exon:18408;Parent=Msa0560270-mRNA-1
chr4_1 exon 59513842 59514039 59513842 ID=Msa0560270-mRNA-1:exon:18409;Parent=Msa0560270-mRNA-1
chr4_1 exon 59514146 59514232 59514146 ID=Msa0560270-mRNA-1:exon:18410;Parent=Msa0560270-mRNA-1
chr4_1 exon 59515906 59516649 59515906 ID=Msa0560270-mRNA-1:exon:18411;Parent=Msa0560270-mRNA-1
chr4_1 five_prime_UTR 59511324 59511442 59511324 ID=Msa0560270-mRNA-1:five_prime_utr;Parent=Msa0560270-mRNA-1
chr4_1 five_prime_UTR 59511531 59511620 59511531 ID=Msa0560270-mRNA-1:five_prime_utr;Parent=Msa0560270-mRNA-1
chr4_1 CDS 59511621 59512001 59511621 ID=Msa0560270-mRNA-1:cds;Parent=Msa0560270-mRNA-1
chr4_1 CDS 59513403 59513489 59513403 ID=Msa0560270-mRNA-1:cds;Parent=Msa0560270-mRNA-1
chr4_1 CDS 59513842 59514039 59513842 ID=Msa0560270-mRNA-1:cds;Parent=Msa0560270-mRNA-1
chr4_1 CDS 59514146 59514232 59514146 ID=Msa0560270-mRNA-1:cds;Parent=Msa0560270-mRNA-1
chr4_1 CDS 59515906 59516649 59515906 ID=Msa0560270-mRNA-1:cds;Parent=Msa0560270-mRNA-1
Gene Sequence

>Msa0560270

ATGTCTAAGGAAGAGAAGAAAGAGAGAGCTGAGTTTACAATCAAAGAAATGGGTCTGCAAGATGCGACCAACACAAGAATTGGAGGGTGGGGTGTTAAAGGCATAAGTGGGGGTCAGAAAAGGAGAGTCAGCATTTGCATTGAGATCCTAACACGTCCAAGACTTCTTTTTCTTGATGAACCAACTAGTGGACTTGATAGTGCAGCTTCTTACTATGTTATGAAAAGAATTGCTACTTTAGATCATAAAGATGGAATTCAAAGGACCATTATTACTTCCATCCATCAACCTAGTACTGAAGTTTTTCAACTCTTTCATAACCTCTGTCTTCTGTCTTCAGGTAGAACAGTTTACTTTGGACCTGCTTCCACTGCTTGTGAGTTTTTTGCTTTGAATGGATTTCATTGTCCTCCTCAACAAAATCCATCTGATCATTTACTTAAAACTATAAACAAGGATTTTGATCAGCACACTAGCTCAATGGATCACAAGAAGAAAGGACATGCTCGATTTCTTAATCAATGCTTAGTTCTTATTGAACGGTCATCAGTGAACATGTTTCGTGATCTAGGCTATTATTGGTTACGCTTAGTCATATATGTTACATTGGCTCTAAGTTTAGGCACCGTTTACTATGATTTGGGTGCAAGTTATGACTCAATTAAGGATCGAGGTTCACTTCTTTCATTTATCTCTGGATTCTTAACTTTCATGAGCATTGGTGGATTTCCTTCATTTGTGGAAGACATGAAGGTATTTCAAAGAGAGAGACAAAATGGGCATTATGGAGTGATTGCATATGTGATTGGGAACACTTTTTCATCAATTCCATTCGTTTTATTGGTTACAATAATTCCAGCAGCTATAACTTATTACCTCCCTGGTCTACAGAAAGGATGTGAACACTTTTTGTACTTCGCTAGTGTTTTATTTGCTAGCCTAATGTTGGTGGAAAGTCTTATGATGATAGTTGCAAGCATTGTTCCTAATTATGTAATGGGAATCATAACTGGTGCTGGAATTCAAGGAATCATGATGTTGGTAGGAGGGTTCTTTAAATTGCCACATGAAATTCCTAAGCCATTTTGGAGGTATCCACTACACTATGTTGCATTTCATTCATATGTATTTGAAGGATTGTTCAAGAATGAGTATGAAGGACTAAGATTTCCTATTAAAAACGGACAAGGTACAAATAGTTACATCACTGGTGAAGAGGTTTTGAGAGATACTTGGCAAAGTAACATGAGTTACTCAAAATGGGTTGATCTTGCAATTTTGCTTGGGATGATTGTTTTGTATCGAGTTTTGTTCCTTGTTATTATCAAAATTACAGAAAAGGTGAAACCTATTGTTGGATCATTGTTACCTTGTATGGCGGTGTCTCCCAATACAACGATACATGTTGTGGAGAAAGATGATGCTACTCCTTTTAATGGGCATGCAGGGGGCGAACCGGAGGGTGTGCGGGAGAAGCGACCAGAGCCTAAATTTTAA
Protein sequence

>Msa0560270

MSKEEKKERAEFTIKEMGLQDATNTRIGGWGVKGISGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYYVMKRIATLDHKDGIQRTIITSIHQPSTEVFQLFHNLCLLSSGRTVYFGPASTACEFFALNGFHCPPQQNPSDHLLKTINKDFDQHTSSMDHKKKGHARFLNQCLVLIERSSVNMFRDLGYYWLRLVIYVTLALSLGTVYYDLGASYDSIKDRGSLLSFISGFLTFMSIGGFPSFVEDMKVFQRERQNGHYGVIAYVIGNTFSSIPFVLLVTIIPAAITYYLPGLQKGCEHFLYFASVLFASLMLVESLMMIVASIVPNYVMGIITGAGIQGIMMLVGGFFKLPHEIPKPFWRYPLHYVAFHSYVFEGLFKNEYEGLRFPIKNGQGTNSYITGEEVLRDTWQSNMSYSKWVDLAILLGMIVLYRVLFLVIIKITEKVKPIVGSLLPCMAVSPNTTIHVVEKDDATPFNGHAGGEPEGVREKRPEPKF*