Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0560790 | XP_013457235.1 | 95.082 | 366 | 17 | 1 | 1 | 366 | 8 | 372 | 0.0 | 696 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0560790 | sp|Q4PT23|WTR6_ARATH | 41.284 | 327 | 188 | 3 | 19 | 343 | 1 | 325 | 1.54e-79 | 250 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0560790 | A0A072UPG7 | 95.082 | 366 | 17 | 1 | 1 | 366 | 8 | 372 | 0.0 | 696 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0560790 | Msa0614720 | 0.827303 | 1.685560e-54 | -8.615850e-47 |
Msa0560790 | Msa0639350 | 0.827075 | 1.910905e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0560790 | MtrunA17_Chr4g0050881 | 96.056 | 355 | 13 | 1 | 12 | 366 | 1 | 354 | 0.0 | 681 |
Msa0560790 | MtrunA17_Chr2g0278541 | 58.651 | 341 | 135 | 2 | 17 | 351 | 9 | 349 | 2.23e-143 | 412 |
Msa0560790 | MtrunA17_Chr2g0278551 | 58.559 | 333 | 136 | 2 | 17 | 348 | 9 | 340 | 1.47e-137 | 397 |
Msa0560790 | MtrunA17_Chr2g0290611 | 54.599 | 337 | 151 | 2 | 17 | 352 | 9 | 344 | 7.71e-129 | 374 |
Msa0560790 | MtrunA17_Chr4g0050891 | 53.416 | 322 | 147 | 2 | 17 | 335 | 10 | 331 | 2.02e-120 | 352 |
Msa0560790 | MtrunA17_Chr2g0278561 | 51.796 | 334 | 160 | 1 | 19 | 351 | 14 | 347 | 2.32e-119 | 350 |
Msa0560790 | MtrunA17_Chr4g0050941 | 50.135 | 371 | 170 | 4 | 1 | 365 | 1 | 362 | 6.94e-114 | 336 |
Msa0560790 | MtrunA17_Chr2g0332001 | 49.438 | 356 | 167 | 4 | 17 | 363 | 35 | 386 | 2.85e-110 | 328 |
Msa0560790 | MtrunA17_Chr4g0050931 | 47.904 | 334 | 130 | 4 | 19 | 347 | 11 | 305 | 1.30e-98 | 295 |
Msa0560790 | MtrunA17_Chr4g0051021 | 43.119 | 327 | 184 | 2 | 18 | 343 | 12 | 337 | 3.88e-91 | 278 |
Msa0560790 | MtrunA17_Chr4g0051001 | 42.904 | 303 | 172 | 1 | 17 | 318 | 28 | 330 | 4.19e-79 | 246 |
Msa0560790 | MtrunA17_Chr7g0255561 | 37.910 | 335 | 204 | 3 | 11 | 342 | 5 | 338 | 1.09e-76 | 241 |
Msa0560790 | MtrunA17_Chr7g0255581 | 37.910 | 335 | 204 | 3 | 11 | 342 | 5 | 338 | 1.09e-76 | 241 |
Msa0560790 | MtrunA17_Chr8g0354121 | 38.068 | 352 | 205 | 9 | 11 | 354 | 5 | 351 | 7.02e-74 | 234 |
Msa0560790 | MtrunA17_Chr3g0114691 | 35.475 | 358 | 219 | 4 | 10 | 363 | 10 | 359 | 7.14e-72 | 229 |
Msa0560790 | MtrunA17_Chr7g0271561 | 37.798 | 336 | 200 | 4 | 16 | 344 | 3 | 336 | 7.25e-71 | 226 |
Msa0560790 | MtrunA17_Chr3g0114731 | 36.070 | 341 | 212 | 2 | 20 | 359 | 18 | 353 | 8.97e-70 | 224 |
Msa0560790 | MtrunA17_Chr3g0081421 | 36.842 | 342 | 209 | 6 | 15 | 352 | 13 | 351 | 6.97e-68 | 219 |
Msa0560790 | MtrunA17_Chr1g0160171 | 35.465 | 344 | 214 | 3 | 11 | 351 | 7 | 345 | 1.12e-67 | 218 |
Msa0560790 | MtrunA17_Chr2g0278021 | 50.224 | 223 | 107 | 2 | 133 | 351 | 1 | 223 | 1.25e-67 | 214 |
Msa0560790 | MtrunA17_Chr3g0081511 | 36.607 | 336 | 206 | 5 | 20 | 352 | 17 | 348 | 7.24e-66 | 213 |
Msa0560790 | MtrunA17_Chr1g0160111 | 37.152 | 323 | 193 | 3 | 29 | 344 | 16 | 335 | 1.44e-65 | 212 |
Msa0560790 | MtrunA17_Chr1g0164831 | 35.398 | 339 | 215 | 4 | 20 | 358 | 3 | 337 | 1.11e-64 | 209 |
Msa0560790 | MtrunA17_Chr3g0129571 | 35.015 | 337 | 207 | 4 | 17 | 344 | 4 | 337 | 1.50e-64 | 209 |
Msa0560790 | MtrunA17_Chr2g0284261 | 33.238 | 349 | 215 | 5 | 20 | 362 | 8 | 344 | 1.98e-64 | 209 |
Msa0560790 | MtrunA17_Chr1g0186601 | 36.023 | 347 | 207 | 8 | 17 | 358 | 13 | 349 | 1.58e-63 | 206 |
Msa0560790 | MtrunA17_Chr3g0114711 | 33.846 | 390 | 211 | 7 | 17 | 365 | 11 | 394 | 2.21e-62 | 204 |
Msa0560790 | MtrunA17_Chr1g0186571 | 35.821 | 335 | 204 | 6 | 17 | 348 | 10 | 336 | 3.56e-61 | 200 |
Msa0560790 | MtrunA17_Chr5g0441761 | 36.176 | 340 | 201 | 5 | 25 | 357 | 19 | 349 | 5.88e-61 | 199 |
Msa0560790 | MtrunA17_Chr7g0263101 | 34.513 | 339 | 212 | 5 | 20 | 356 | 13 | 343 | 1.50e-60 | 199 |
Msa0560790 | MtrunA17_Chr3g0114701 | 36.467 | 351 | 214 | 5 | 12 | 356 | 1 | 348 | 1.70e-59 | 197 |
Msa0560790 | MtrunA17_Chr3g0129591 | 35.593 | 354 | 209 | 7 | 18 | 361 | 3 | 347 | 6.02e-59 | 194 |
Msa0560790 | MtrunA17_Chr1g0186611 | 34.571 | 350 | 208 | 9 | 17 | 358 | 13 | 349 | 1.17e-58 | 194 |
Msa0560790 | MtrunA17_Chr1g0182291 | 32.267 | 344 | 213 | 6 | 20 | 357 | 15 | 344 | 1.50e-57 | 191 |
Msa0560790 | MtrunA17_Chr3g0129601 | 34.650 | 329 | 213 | 2 | 17 | 343 | 26 | 354 | 3.46e-56 | 187 |
Msa0560790 | MtrunA17_Chr1g0186641 | 33.333 | 351 | 223 | 5 | 11 | 358 | 4 | 346 | 3.11e-55 | 184 |
Msa0560790 | MtrunA17_Chr1g0184221 | 31.198 | 359 | 224 | 4 | 17 | 359 | 13 | 364 | 8.18e-54 | 181 |
Msa0560790 | MtrunA17_Chr1g0160181 | 34.844 | 353 | 219 | 5 | 20 | 366 | 18 | 365 | 1.69e-53 | 181 |
Msa0560790 | MtrunA17_Chr5g0428881 | 31.944 | 360 | 239 | 3 | 9 | 362 | 7 | 366 | 3.42e-53 | 180 |
Msa0560790 | MtrunA17_Chr1g0186561 | 35.588 | 340 | 199 | 8 | 17 | 348 | 13 | 340 | 3.66e-53 | 179 |
Msa0560790 | MtrunA17_Chr5g0413961 | 32.362 | 343 | 211 | 5 | 16 | 348 | 10 | 341 | 6.49e-53 | 179 |
Msa0560790 | MtrunA17_Chr8g0334761 | 31.378 | 341 | 228 | 3 | 21 | 358 | 11 | 348 | 1.40e-51 | 176 |
Msa0560790 | MtrunA17_Chr6g0463971 | 33.929 | 336 | 208 | 5 | 20 | 346 | 16 | 346 | 2.50e-51 | 175 |
Msa0560790 | MtrunA17_Chr3g0129581 | 33.428 | 353 | 218 | 5 | 18 | 361 | 3 | 347 | 4.04e-51 | 174 |
Msa0560790 | MtrunA17_Chr4g0073241 | 30.899 | 356 | 227 | 6 | 21 | 365 | 9 | 356 | 4.77e-51 | 174 |
Msa0560790 | MtrunA17_Chr1g0171301 | 30.471 | 361 | 234 | 6 | 4 | 358 | 5 | 354 | 4.79e-51 | 174 |
Msa0560790 | MtrunA17_Chr2g0310441 | 30.659 | 349 | 223 | 4 | 21 | 356 | 11 | 353 | 1.09e-50 | 173 |
Msa0560790 | MtrunA17_Chr4g0059311 | 30.960 | 323 | 211 | 5 | 45 | 364 | 37 | 350 | 7.32e-50 | 171 |
Msa0560790 | MtrunA17_Chr6g0483401 | 32.520 | 369 | 211 | 8 | 12 | 365 | 1 | 346 | 1.01e-49 | 171 |
Msa0560790 | MtrunA17_Chr8g0383731 | 32.286 | 350 | 221 | 6 | 20 | 358 | 5 | 349 | 2.15e-49 | 169 |
Msa0560790 | MtrunA17_Chr3g0126101 | 33.143 | 350 | 209 | 7 | 21 | 364 | 7 | 337 | 1.17e-47 | 164 |
Msa0560790 | MtrunA17_Chr3g0142131 | 32.514 | 366 | 215 | 7 | 25 | 365 | 25 | 383 | 2.26e-47 | 165 |
Msa0560790 | MtrunA17_Chr8g0334771 | 31.519 | 349 | 223 | 4 | 21 | 361 | 11 | 351 | 1.61e-46 | 162 |
Msa0560790 | MtrunA17_Chr5g0413941 | 31.515 | 330 | 208 | 4 | 25 | 346 | 12 | 331 | 4.07e-46 | 160 |
Msa0560790 | MtrunA17_Chr3g0084091 | 35.055 | 271 | 161 | 4 | 100 | 361 | 11 | 275 | 5.10e-45 | 156 |
Msa0560790 | MtrunA17_Chr5g0413951 | 31.611 | 329 | 201 | 4 | 25 | 342 | 12 | 327 | 4.80e-44 | 155 |
Msa0560790 | MtrunA17_Chr8g0334751 | 30.168 | 358 | 220 | 5 | 21 | 362 | 12 | 355 | 1.18e-43 | 154 |
Msa0560790 | MtrunA17_Chr7g0227921 | 32.722 | 327 | 211 | 4 | 17 | 340 | 8 | 328 | 2.97e-43 | 154 |
Msa0560790 | MtrunA17_Chr6g0451211 | 31.054 | 351 | 222 | 6 | 21 | 364 | 13 | 350 | 2.17e-42 | 151 |
Msa0560790 | MtrunA17_Chr5g0413921 | 31.707 | 328 | 210 | 4 | 25 | 346 | 12 | 331 | 6.61e-42 | 149 |
Msa0560790 | MtrunA17_Chr1g0150151 | 29.096 | 354 | 223 | 7 | 1 | 344 | 1 | 336 | 8.31e-42 | 149 |
Msa0560790 | MtrunA17_Chr1g0155761 | 29.894 | 378 | 237 | 7 | 14 | 366 | 15 | 389 | 1.86e-41 | 149 |
Msa0560790 | MtrunA17_Chr5g0429001 | 31.970 | 269 | 181 | 1 | 77 | 343 | 9 | 277 | 3.82e-41 | 147 |
Msa0560790 | MtrunA17_Chr5g0407971 | 30.748 | 361 | 210 | 8 | 16 | 350 | 7 | 353 | 6.32e-38 | 140 |
Msa0560790 | MtrunA17_Chr5g0413931 | 30.887 | 327 | 216 | 5 | 24 | 346 | 10 | 330 | 6.64e-38 | 139 |
Msa0560790 | MtrunA17_Chr6g0451171 | 32.792 | 308 | 194 | 6 | 37 | 340 | 29 | 327 | 7.56e-38 | 139 |
Msa0560790 | MtrunA17_Chr6g0451251 | 32.258 | 310 | 192 | 5 | 38 | 340 | 30 | 328 | 2.06e-37 | 138 |
Msa0560790 | MtrunA17_Chr6g0451201 | 31.902 | 326 | 203 | 6 | 21 | 340 | 13 | 325 | 3.92e-37 | 137 |
Msa0560790 | MtrunA17_Chr1g0211801 | 29.297 | 256 | 164 | 3 | 20 | 268 | 11 | 256 | 5.30e-36 | 132 |
Msa0560790 | MtrunA17_Chr8g0369841 | 29.446 | 343 | 222 | 6 | 25 | 351 | 14 | 352 | 1.64e-33 | 128 |
Msa0560790 | MtrunA17_Chr6g0451261 | 28.664 | 307 | 213 | 3 | 17 | 321 | 8 | 310 | 1.65e-33 | 132 |
Msa0560790 | MtrunA17_Chr4g0050911 | 47.328 | 131 | 63 | 2 | 94 | 218 | 6 | 136 | 2.40e-33 | 122 |
Msa0560790 | MtrunA17_Chr4g0050921 | 54.455 | 101 | 46 | 0 | 218 | 318 | 1 | 101 | 4.61e-33 | 120 |
Msa0560790 | MtrunA17_Chr2g0278031 | 50.435 | 115 | 56 | 1 | 19 | 132 | 13 | 127 | 5.97e-32 | 117 |
Msa0560790 | MtrunA17_Chr5g0408031 | 28.997 | 369 | 229 | 6 | 17 | 364 | 7 | 363 | 7.50e-32 | 123 |
Msa0560790 | MtrunA17_Chr3g0126091 | 27.606 | 355 | 235 | 7 | 21 | 365 | 12 | 354 | 1.06e-31 | 122 |
Msa0560790 | MtrunA17_Chr5g0408041 | 28.804 | 368 | 229 | 6 | 19 | 365 | 10 | 365 | 1.37e-31 | 123 |
Msa0560790 | MtrunA17_Chr1g0177221 | 33.202 | 253 | 159 | 4 | 20 | 268 | 18 | 264 | 1.96e-31 | 119 |
Msa0560790 | MtrunA17_Chr5g0407991 | 29.348 | 368 | 223 | 9 | 20 | 365 | 9 | 361 | 8.03e-31 | 120 |
Msa0560790 | MtrunA17_Chr5g0408001 | 28.571 | 350 | 225 | 8 | 12 | 342 | 1 | 344 | 7.56e-29 | 115 |
Msa0560790 | MtrunA17_Chr5g0404811 | 31.193 | 218 | 143 | 3 | 133 | 347 | 7 | 220 | 7.35e-28 | 109 |
Msa0560790 | MtrunA17_Chr4g0056081 | 27.684 | 354 | 213 | 11 | 25 | 353 | 19 | 354 | 4.07e-27 | 110 |
Msa0560790 | MtrunA17_Chr5g0399281 | 26.000 | 350 | 235 | 7 | 25 | 364 | 13 | 348 | 5.74e-27 | 109 |
Msa0560790 | MtrunA17_Chr6g0451191 | 29.245 | 212 | 136 | 4 | 133 | 340 | 1 | 202 | 1.08e-26 | 106 |
Msa0560790 | MtrunA17_Chr8g0334711 | 33.990 | 203 | 116 | 4 | 21 | 215 | 11 | 203 | 1.42e-26 | 105 |
Msa0560790 | MtrunA17_Chr8g0334721 | 31.618 | 136 | 92 | 1 | 232 | 366 | 1 | 136 | 1.58e-21 | 90.1 |
Msa0560790 | MtrunA17_Chr1g0182261 | 37.107 | 159 | 89 | 7 | 209 | 360 | 76 | 230 | 1.90e-18 | 83.6 |
Msa0560790 | MtrunA17_Chr1g0172891 | 38.298 | 94 | 48 | 2 | 275 | 366 | 13 | 98 | 1.30e-15 | 72.4 |
Msa0560790 | MtrunA17_Chr1g0177231 | 42.667 | 75 | 43 | 0 | 268 | 342 | 28 | 102 | 2.25e-15 | 72.0 |
Msa0560790 | MtrunA17_Chr4g0050901 | 60.000 | 65 | 23 | 1 | 12 | 73 | 1 | 65 | 1.97e-14 | 67.4 |
Msa0560790 | MtrunA17_Chr8g0334731 | 29.717 | 212 | 121 | 6 | 21 | 230 | 12 | 197 | 5.12e-14 | 70.1 |
Msa0560790 | MtrunA17_Chr1g0211811 | 37.838 | 74 | 46 | 0 | 272 | 345 | 3 | 76 | 1.38e-13 | 65.9 |
Msa0560790 | MtrunA17_Chr6g0451241 | 42.254 | 71 | 41 | 0 | 270 | 340 | 9 | 79 | 2.58e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0560790 | AT1G25270.1 | 41.284 | 327 | 188 | 3 | 19 | 343 | 1 | 325 | 1.57e-80 | 250 |
Msa0560790 | AT1G68170.2 | 41.018 | 334 | 196 | 1 | 11 | 343 | 3 | 336 | 3.29e-75 | 237 |
Msa0560790 | AT1G68170.1 | 41.718 | 326 | 189 | 1 | 19 | 343 | 1 | 326 | 5.81e-75 | 236 |
Msa0560790 | AT4G08290.1 | 37.920 | 327 | 201 | 2 | 17 | 342 | 9 | 334 | 3.77e-73 | 232 |
Msa0560790 | AT1G44800.1 | 37.500 | 352 | 208 | 5 | 10 | 358 | 1 | 343 | 1.43e-69 | 223 |
Msa0560790 | AT5G07050.1 | 35.977 | 353 | 216 | 5 | 17 | 359 | 14 | 366 | 2.52e-68 | 220 |
Msa0560790 | AT2G37460.1 | 34.384 | 349 | 214 | 5 | 20 | 365 | 14 | 350 | 3.50e-67 | 217 |
Msa0560790 | AT1G09380.1 | 36.728 | 324 | 193 | 3 | 21 | 337 | 8 | 326 | 3.76e-67 | 216 |
Msa0560790 | AT1G21890.1 | 35.097 | 359 | 214 | 4 | 17 | 366 | 7 | 355 | 6.56e-66 | 214 |
Msa0560790 | AT4G08300.1 | 35.503 | 338 | 216 | 2 | 10 | 346 | 1 | 337 | 8.63e-66 | 213 |
Msa0560790 | AT5G13670.1 | 35.821 | 335 | 206 | 7 | 20 | 350 | 7 | 336 | 1.62e-64 | 210 |
Msa0560790 | AT3G30340.1 | 34.226 | 336 | 208 | 3 | 20 | 349 | 10 | 338 | 2.75e-61 | 201 |
Msa0560790 | AT2G39510.1 | 34.943 | 352 | 210 | 8 | 20 | 366 | 7 | 344 | 4.73e-61 | 201 |
Msa0560790 | AT4G30420.2 | 33.424 | 368 | 216 | 6 | 20 | 365 | 8 | 368 | 6.37e-60 | 198 |
Msa0560790 | AT4G30420.1 | 33.333 | 363 | 213 | 6 | 25 | 365 | 3 | 358 | 4.96e-58 | 193 |
Msa0560790 | AT1G01070.1 | 33.138 | 341 | 220 | 4 | 21 | 359 | 16 | 350 | 9.46e-58 | 192 |
Msa0560790 | AT2G40900.1 | 33.531 | 337 | 208 | 6 | 15 | 344 | 5 | 332 | 8.53e-56 | 187 |
Msa0560790 | AT4G01440.1 | 32.440 | 336 | 223 | 2 | 12 | 346 | 1 | 333 | 1.10e-55 | 186 |
Msa0560790 | AT5G64700.1 | 34.393 | 346 | 213 | 5 | 17 | 357 | 4 | 340 | 1.51e-55 | 186 |
Msa0560790 | AT1G21890.2 | 35.256 | 312 | 195 | 2 | 17 | 321 | 7 | 318 | 4.55e-54 | 182 |
Msa0560790 | AT1G11450.3 | 31.672 | 341 | 225 | 4 | 21 | 358 | 16 | 351 | 1.24e-53 | 181 |
Msa0560790 | AT3G56620.1 | 32.110 | 327 | 210 | 3 | 14 | 337 | 4 | 321 | 1.60e-53 | 181 |
Msa0560790 | AT1G43650.1 | 33.721 | 344 | 211 | 5 | 20 | 356 | 6 | 339 | 4.47e-52 | 176 |
Msa0560790 | AT3G53210.1 | 31.921 | 354 | 232 | 3 | 12 | 358 | 1 | 352 | 6.05e-51 | 174 |
Msa0560790 | AT4G01430.1 | 32.132 | 333 | 214 | 7 | 21 | 346 | 9 | 336 | 9.93e-51 | 174 |
Msa0560790 | AT4G01440.3 | 32.143 | 308 | 205 | 2 | 12 | 318 | 1 | 305 | 9.91e-50 | 169 |
Msa0560790 | AT3G18200.2 | 31.412 | 347 | 214 | 10 | 11 | 346 | 23 | 356 | 1.34e-49 | 171 |
Msa0560790 | AT2G37450.2 | 32.000 | 350 | 199 | 6 | 12 | 356 | 1 | 316 | 1.93e-49 | 169 |
Msa0560790 | AT1G11450.5 | 32.051 | 312 | 204 | 4 | 50 | 358 | 1 | 307 | 2.42e-49 | 168 |
Msa0560790 | AT1G11460.1 | 32.407 | 324 | 214 | 4 | 21 | 342 | 16 | 336 | 7.20e-49 | 168 |
Msa0560790 | AT1G01070.2 | 32.026 | 306 | 201 | 3 | 55 | 359 | 4 | 303 | 5.22e-47 | 162 |
Msa0560790 | AT4G08290.2 | 36.029 | 272 | 168 | 3 | 17 | 287 | 9 | 275 | 6.85e-47 | 161 |
Msa0560790 | AT4G01450.2 | 33.939 | 330 | 210 | 3 | 12 | 340 | 1 | 323 | 7.55e-47 | 163 |
Msa0560790 | AT5G40240.1 | 31.988 | 322 | 216 | 2 | 21 | 340 | 20 | 340 | 1.91e-46 | 162 |
Msa0560790 | AT5G40240.3 | 31.988 | 322 | 216 | 2 | 21 | 340 | 20 | 340 | 1.91e-46 | 162 |
Msa0560790 | AT5G40240.2 | 31.988 | 322 | 216 | 2 | 21 | 340 | 34 | 354 | 3.17e-46 | 162 |
Msa0560790 | AT4G01450.1 | 33.442 | 308 | 197 | 3 | 12 | 318 | 1 | 301 | 3.97e-46 | 161 |
Msa0560790 | AT4G28040.1 | 30.137 | 365 | 222 | 6 | 20 | 366 | 7 | 356 | 1.34e-45 | 160 |
Msa0560790 | AT4G28040.5 | 30.137 | 365 | 222 | 6 | 20 | 366 | 7 | 356 | 1.34e-45 | 160 |
Msa0560790 | AT4G28040.3 | 30.137 | 365 | 222 | 6 | 20 | 366 | 7 | 356 | 1.34e-45 | 160 |
Msa0560790 | AT4G28040.4 | 30.137 | 365 | 222 | 6 | 20 | 366 | 7 | 356 | 1.34e-45 | 160 |
Msa0560790 | AT4G28040.2 | 30.137 | 365 | 222 | 6 | 20 | 366 | 7 | 356 | 1.34e-45 | 160 |
Msa0560790 | AT1G11450.2 | 31.475 | 305 | 201 | 4 | 57 | 358 | 1 | 300 | 1.40e-45 | 158 |
Msa0560790 | AT3G53210.2 | 33.457 | 269 | 171 | 2 | 96 | 358 | 29 | 295 | 1.26e-43 | 153 |
Msa0560790 | AT1G75500.1 | 31.157 | 337 | 215 | 8 | 17 | 342 | 16 | 346 | 2.68e-42 | 152 |
Msa0560790 | AT1G75500.2 | 31.157 | 337 | 215 | 8 | 17 | 342 | 16 | 346 | 2.68e-42 | 152 |
Msa0560790 | AT5G40230.1 | 30.571 | 350 | 227 | 6 | 21 | 358 | 21 | 366 | 4.19e-42 | 151 |
Msa0560790 | AT1G11450.4 | 30.897 | 301 | 200 | 4 | 21 | 318 | 16 | 311 | 8.21e-42 | 149 |
Msa0560790 | AT1G70260.1 | 28.610 | 374 | 227 | 10 | 17 | 364 | 8 | 367 | 3.48e-41 | 149 |
Msa0560790 | AT3G30340.2 | 35.294 | 255 | 152 | 3 | 20 | 268 | 10 | 257 | 7.55e-41 | 145 |
Msa0560790 | AT4G01450.4 | 34.109 | 258 | 162 | 3 | 12 | 268 | 1 | 251 | 2.26e-40 | 143 |
Msa0560790 | AT4G01430.2 | 30.820 | 305 | 199 | 7 | 21 | 318 | 9 | 308 | 4.29e-40 | 144 |
Msa0560790 | AT5G40210.1 | 33.437 | 323 | 187 | 9 | 36 | 351 | 28 | 329 | 7.93e-40 | 144 |
Msa0560790 | AT2G37450.3 | 33.465 | 254 | 151 | 4 | 108 | 356 | 4 | 244 | 1.46e-39 | 141 |
Msa0560790 | AT3G28050.1 | 29.787 | 329 | 211 | 6 | 36 | 361 | 27 | 338 | 3.17e-39 | 143 |
Msa0560790 | AT4G01440.5 | 32.456 | 228 | 151 | 1 | 119 | 346 | 1 | 225 | 3.71e-39 | 140 |
Msa0560790 | AT4G01440.2 | 32.456 | 228 | 151 | 1 | 119 | 346 | 1 | 225 | 3.71e-39 | 140 |
Msa0560790 | AT5G45370.1 | 31.024 | 332 | 193 | 5 | 25 | 344 | 24 | 331 | 1.09e-38 | 142 |
Msa0560790 | AT4G01440.4 | 32.558 | 258 | 170 | 2 | 12 | 268 | 1 | 255 | 1.67e-38 | 139 |
Msa0560790 | AT3G18200.1 | 32.618 | 233 | 144 | 5 | 118 | 346 | 3 | 226 | 2.72e-38 | 138 |
Msa0560790 | AT5G45370.2 | 30.564 | 337 | 208 | 4 | 25 | 342 | 24 | 353 | 3.39e-38 | 141 |
Msa0560790 | AT5G45370.4 | 30.564 | 337 | 208 | 4 | 25 | 342 | 24 | 353 | 3.39e-38 | 141 |
Msa0560790 | AT4G15540.1 | 32.727 | 330 | 190 | 6 | 21 | 340 | 17 | 324 | 4.82e-38 | 139 |
Msa0560790 | AT4G15540.2 | 32.727 | 330 | 190 | 6 | 21 | 340 | 17 | 324 | 4.82e-38 | 139 |
Msa0560790 | AT1G11450.1 | 31.518 | 257 | 169 | 3 | 104 | 358 | 8 | 259 | 6.71e-38 | 137 |
Msa0560790 | AT3G28070.2 | 33.333 | 255 | 159 | 6 | 102 | 351 | 7 | 255 | 1.04e-36 | 134 |
Msa0560790 | AT3G45870.1 | 31.402 | 328 | 209 | 5 | 20 | 335 | 11 | 334 | 1.57e-36 | 136 |
Msa0560790 | AT3G28070.1 | 32.830 | 265 | 167 | 6 | 92 | 351 | 89 | 347 | 6.39e-36 | 134 |
Msa0560790 | AT3G28100.1 | 30.599 | 317 | 210 | 6 | 36 | 347 | 29 | 340 | 3.46e-34 | 129 |
Msa0560790 | AT4G01450.3 | 34.361 | 227 | 141 | 3 | 12 | 237 | 1 | 220 | 3.14e-33 | 124 |
Msa0560790 | AT3G28130.5 | 30.672 | 238 | 162 | 3 | 108 | 344 | 15 | 250 | 1.91e-32 | 122 |
Msa0560790 | AT3G28130.1 | 30.672 | 238 | 162 | 3 | 108 | 344 | 15 | 250 | 1.91e-32 | 122 |
Msa0560790 | AT5G64700.2 | 32.422 | 256 | 168 | 4 | 17 | 267 | 4 | 259 | 3.23e-32 | 122 |
Msa0560790 | AT3G28080.5 | 32.917 | 240 | 153 | 5 | 108 | 344 | 13 | 247 | 6.64e-32 | 121 |
Msa0560790 | AT3G28080.7 | 32.917 | 240 | 153 | 5 | 108 | 344 | 13 | 247 | 6.64e-32 | 121 |
Msa0560790 | AT3G28080.8 | 32.917 | 240 | 153 | 5 | 108 | 344 | 13 | 247 | 6.64e-32 | 121 |
Msa0560790 | AT3G28080.6 | 32.917 | 240 | 153 | 5 | 108 | 344 | 13 | 247 | 6.64e-32 | 121 |
Msa0560790 | AT1G60050.1 | 26.542 | 373 | 243 | 8 | 12 | 364 | 4 | 365 | 9.52e-32 | 123 |
Msa0560790 | AT3G28130.2 | 30.672 | 238 | 162 | 3 | 108 | 344 | 101 | 336 | 1.04e-31 | 123 |
Msa0560790 | AT3G53210.3 | 31.707 | 246 | 165 | 2 | 12 | 256 | 1 | 244 | 2.87e-31 | 119 |
Msa0560790 | AT3G28080.2 | 32.917 | 240 | 153 | 5 | 108 | 344 | 94 | 328 | 3.41e-31 | 121 |
Msa0560790 | AT3G28080.1 | 32.917 | 240 | 153 | 5 | 108 | 344 | 102 | 336 | 3.80e-31 | 121 |
Msa0560790 | AT5G45370.6 | 30.888 | 259 | 154 | 3 | 104 | 344 | 2 | 253 | 2.63e-30 | 117 |
Msa0560790 | AT5G45370.5 | 30.888 | 259 | 154 | 3 | 104 | 344 | 2 | 253 | 2.63e-30 | 117 |
Msa0560790 | AT2G37450.1 | 31.441 | 229 | 139 | 4 | 133 | 356 | 62 | 277 | 7.78e-30 | 116 |
Msa0560790 | AT4G19185.1 | 30.383 | 339 | 214 | 7 | 25 | 346 | 25 | 358 | 7.83e-30 | 118 |
Msa0560790 | AT3G45870.8 | 29.260 | 311 | 204 | 5 | 20 | 318 | 11 | 317 | 2.67e-28 | 113 |
Msa0560790 | AT1G43650.2 | 32.411 | 253 | 156 | 4 | 20 | 267 | 6 | 248 | 4.44e-28 | 111 |
Msa0560790 | AT5G47470.1 | 28.161 | 348 | 226 | 8 | 25 | 365 | 34 | 364 | 4.90e-28 | 113 |
Msa0560790 | AT4G16620.1 | 30.421 | 309 | 195 | 8 | 59 | 359 | 49 | 345 | 5.71e-28 | 112 |
Msa0560790 | AT5G47470.2 | 28.161 | 348 | 226 | 8 | 25 | 365 | 62 | 392 | 7.46e-28 | 113 |
Msa0560790 | AT4G01430.3 | 31.863 | 204 | 129 | 5 | 148 | 346 | 1 | 199 | 7.78e-28 | 109 |
Msa0560790 | AT3G28070.5 | 31.839 | 223 | 141 | 6 | 134 | 351 | 2 | 218 | 8.43e-28 | 109 |
Msa0560790 | AT4G19185.2 | 31.298 | 262 | 165 | 5 | 98 | 346 | 21 | 280 | 5.36e-27 | 109 |
Msa0560790 | AT4G24980.1 | 27.974 | 311 | 147 | 9 | 36 | 341 | 2 | 240 | 5.54e-27 | 108 |
Msa0560790 | AT5G47470.3 | 27.964 | 329 | 218 | 7 | 25 | 346 | 62 | 378 | 3.20e-26 | 108 |
Msa0560790 | AT3G28070.3 | 32.328 | 232 | 146 | 6 | 92 | 318 | 89 | 314 | 3.35e-25 | 104 |
Msa0560790 | AT3G28130.3 | 28.774 | 212 | 148 | 3 | 134 | 344 | 2 | 211 | 3.35e-24 | 99.8 |
Msa0560790 | AT3G45870.5 | 31.905 | 210 | 134 | 2 | 134 | 335 | 51 | 259 | 7.45e-24 | 100 |
Msa0560790 | AT5G45370.3 | 29.515 | 227 | 135 | 3 | 134 | 342 | 74 | 293 | 8.27e-24 | 100 |
Msa0560790 | AT4G16620.4 | 29.572 | 257 | 164 | 5 | 108 | 359 | 4 | 248 | 1.39e-23 | 99.0 |
Msa0560790 | AT4G16620.2 | 29.572 | 257 | 164 | 5 | 108 | 359 | 4 | 248 | 1.39e-23 | 99.0 |
Msa0560790 | AT3G28080.9 | 30.841 | 214 | 140 | 5 | 134 | 344 | 2 | 210 | 2.48e-23 | 97.4 |
Msa0560790 | AT3G45870.9 | 29.719 | 249 | 160 | 4 | 20 | 256 | 11 | 256 | 7.14e-21 | 91.7 |
Msa0560790 | AT3G28080.4 | 27.917 | 240 | 114 | 4 | 108 | 345 | 13 | 195 | 4.61e-19 | 85.1 |
Msa0560790 | AT3G28080.3 | 27.917 | 240 | 114 | 4 | 108 | 345 | 102 | 284 | 1.95e-18 | 85.1 |
Msa0560790 | AT3G45870.2 | 35.000 | 140 | 90 | 1 | 196 | 335 | 45 | 183 | 2.05e-18 | 84.0 |
Msa0560790 | AT3G45870.6 | 28.497 | 193 | 129 | 2 | 134 | 318 | 51 | 242 | 3.71e-16 | 77.8 |
Msa0560790 | AT3G45870.7 | 28.497 | 193 | 129 | 2 | 134 | 318 | 51 | 242 | 3.71e-16 | 77.8 |
Msa0560790 | AT3G28100.3 | 28.814 | 236 | 159 | 5 | 36 | 266 | 29 | 260 | 4.77e-14 | 72.0 |
Msa0560790 | AT4G16620.3 | 28.934 | 197 | 132 | 5 | 59 | 252 | 49 | 240 | 1.50e-12 | 67.8 |
Msa0560790 | AT3G28130.4 | 27.500 | 160 | 114 | 2 | 108 | 266 | 101 | 259 | 3.34e-11 | 63.5 |
Find 120 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCATACTTCCCTTCCTTAA+TGG | 0.146793 | 4_1:-60071867 | Msa0560790:exon |
TTGTCTTGGCCGTGTCTTTC+GGG | 0.189585 | 4_1:-60071130 | Msa0560790:intron |
CCTCCTATATATAAAGTAAT+TGG | 0.215182 | 4_1:+60073939 | None:intergenic |
AAGGAGTAGAATTTGATATT+TGG | 0.219912 | 4_1:-60070908 | Msa0560790:CDS |
CGTTCCGTGTGGTCGTTCTT+TGG | 0.231574 | 4_1:+60070861 | None:intergenic |
CTCAATCTGGCTCATCATTC+AGG | 0.236067 | 4_1:-60070775 | Msa0560790:intron |
GTTGCTTCTGTTTCTCAATC+TGG | 0.266172 | 4_1:-60070788 | Msa0560790:CDS |
GGAAGCTTGGTTGGGATATC+AGG | 0.284815 | 4_1:-60070551 | Msa0560790:CDS |
GCAATAGACCCCAGCCATTA+AGG | 0.287649 | 4_1:+60071853 | None:intergenic |
TTCCTTGCTAATTGATTTGT+TGG | 0.304642 | 4_1:+60073976 | None:intergenic |
TTTGTCTTGGCCGTGTCTTT+CGG | 0.313966 | 4_1:-60071131 | Msa0560790:CDS |
TACTTCCCTTCCTTAATGGC+TGG | 0.316974 | 4_1:-60071863 | Msa0560790:exon |
CAAAAGTGACGGAGGGAATA+AGG | 0.317897 | 4_1:+60071150 | None:intergenic |
TAGTATATAGATCTCTAAAA+TGG | 0.321010 | 4_1:+60069639 | None:intergenic |
GGAACTATACTTGGATTTGC+TGG | 0.338162 | 4_1:-60070954 | Msa0560790:CDS |
TATATACTATTCAATGTATA+TGG | 0.341538 | 4_1:-60069625 | Msa0560790:three_prime_UTR |
GTAGTTTCGAGGAATTAAAT+TGG | 0.346894 | 4_1:-60071007 | Msa0560790:intron |
GATACTCATTCCATCATATA+TGG | 0.347161 | 4_1:+60071724 | None:intergenic |
AATCCAATTACTTTATATAT+AGG | 0.347980 | 4_1:-60073942 | Msa0560790:five_prime_UTR |
CAACAATGGCCTTGCAGCTT+CGG | 0.348823 | 4_1:+60069901 | None:intergenic |
GCTACAATCAAAAGCATTAG+AGG | 0.354140 | 4_1:+60070307 | None:intergenic |
ATAGCTTTGATGTCTGTAAT+AGG | 0.358630 | 4_1:-60070627 | Msa0560790:CDS |
GCCGGACCCAATCCACTTAC+TGG | 0.369061 | 4_1:-60073729 | Msa0560790:intron |
CTTGAAACCAGCCTTGCTAA+TGG | 0.382121 | 4_1:-60071795 | Msa0560790:CDS |
GCCATTAAGGAAGGGAAGTA+TGG | 0.382507 | 4_1:+60071866 | None:intergenic |
ACTTCCCTTCCTTAATGGCT+GGG | 0.392567 | 4_1:-60071862 | Msa0560790:exon |
CATTAGCAAGGCTGGTTTCA+AGG | 0.401211 | 4_1:+60071796 | None:intergenic |
TTGTGTGTGTATAGTATACT+AGG | 0.405190 | 4_1:-60070028 | Msa0560790:intron |
TGGCCTATACTCGGTGCTAT+GGG | 0.408293 | 4_1:-60069987 | Msa0560790:CDS |
ACTTGGATTTGCTGGGGCAT+TGG | 0.417474 | 4_1:-60070946 | Msa0560790:CDS |
GGAGGAGTGTTGATTGTTTG+TGG | 0.420620 | 4_1:-60070007 | Msa0560790:CDS |
TTGAAAGCAGACGCATATAA+AGG | 0.425809 | 4_1:+60070331 | None:intergenic |
AACCAGCCTTGCTAATGGTT+GGG | 0.425888 | 4_1:-60071790 | Msa0560790:CDS |
TATAATATAACAACTTCAAA+TGG | 0.428365 | 4_1:+60069747 | None:intergenic |
GTGGCCTATACTCGGTGCTA+TGG | 0.435616 | 4_1:-60069988 | Msa0560790:CDS |
GATGCTACCACTGAATTGTT+AGG | 0.445239 | 4_1:-60070831 | Msa0560790:CDS |
ACCCCAACCATTAGCAAGGC+TGG | 0.447222 | 4_1:+60071788 | None:intergenic |
AAACAAGAGCTCCGTAGAAT+AGG | 0.449858 | 4_1:+60071207 | None:intergenic |
TGAACCAGTGGAAGCTTGGT+TGG | 0.454016 | 4_1:-60070560 | Msa0560790:CDS |
TCCAAAAGATTGATTGCAAA+AGG | 0.456878 | 4_1:+60070885 | None:intergenic |
AACACTCTCCAAGTCATCTT+CGG | 0.457047 | 4_1:+60071393 | None:intergenic |
GAACCAGTGGAAGCTTGGTT+GGG | 0.459485 | 4_1:-60070559 | Msa0560790:CDS |
CAATGTTACGTACCAGTAAG+TGG | 0.462105 | 4_1:+60073717 | None:intergenic |
TATATATAAAGTAATTGGAT+TGG | 0.466563 | 4_1:+60073944 | None:intergenic |
TTGCAGTCTGATCTTGAAGA+TGG | 0.475617 | 4_1:-60071834 | Msa0560790:CDS |
ATTAAATTGGCGAGAAGTAA+CGG | 0.476196 | 4_1:-60070994 | Msa0560790:CDS |
TACAAGCTTGCCATATATGA+TGG | 0.476535 | 4_1:-60071734 | Msa0560790:CDS |
ACCAGTAAGTGGATTGGGTC+CGG | 0.482110 | 4_1:+60073728 | None:intergenic |
ATATATAAAGTAATTGGATT+GGG | 0.482820 | 4_1:+60073945 | None:intergenic |
GATTTGAACCAGTGGAAGCT+TGG | 0.483175 | 4_1:-60070564 | Msa0560790:CDS |
AAACCAGCCTTGCTAATGGT+TGG | 0.486693 | 4_1:-60071791 | Msa0560790:CDS |
TACTCGGTGCTATGGGGTAA+AGG | 0.487794 | 4_1:-60069980 | Msa0560790:CDS |
AAGGTTGTAGGAACTATACT+TGG | 0.488678 | 4_1:-60070963 | Msa0560790:CDS |
GAACTATACTTGGATTTGCT+GGG | 0.489267 | 4_1:-60070953 | Msa0560790:CDS |
GTGTTTGTCCTCAGTACCTC+TGG | 0.492749 | 4_1:+60073869 | None:intergenic |
TGGAATAATGATTCTTGTCA+TGG | 0.496034 | 4_1:-60070377 | Msa0560790:CDS |
TTAAATTGGCGAGAAGTAAC+GGG | 0.496087 | 4_1:-60070993 | Msa0560790:CDS |
TACGTACCAGTAAGTGGATT+GGG | 0.496939 | 4_1:+60073723 | None:intergenic |
TTATTTCAAAACCTATTCTA+CGG | 0.499151 | 4_1:-60071218 | Msa0560790:CDS |
TGATCGTCTATGTAGTTTCG+AGG | 0.500886 | 4_1:-60071018 | Msa0560790:intron |
CTTCCCTTCCTTAATGGCTG+GGG | 0.501081 | 4_1:-60071861 | Msa0560790:exon |
ACGGGAAAGGCAAAGGTTGT+AGG | 0.503442 | 4_1:-60070975 | Msa0560790:CDS |
ATTCGTCGCATCCATGCTCT+TGG | 0.505539 | 4_1:-60070284 | Msa0560790:CDS |
GGAAGAGACCGAAGATGACT+TGG | 0.506957 | 4_1:-60071401 | Msa0560790:CDS |
GGATTGGGTCCGGCTCTTCG+AGG | 0.509683 | 4_1:+60073738 | None:intergenic |
TAATGATTCTTGTCATGGCA+TGG | 0.509769 | 4_1:-60070372 | Msa0560790:CDS |
AGTCATGCGTACATAATAGC+TGG | 0.511139 | 4_1:+60069712 | None:intergenic |
AATAAGAGCAAGAGGAATAG+TGG | 0.511175 | 4_1:+60071661 | None:intergenic |
ATCAAAGCTATGCTTGATTG+AGG | 0.515025 | 4_1:+60070639 | None:intergenic |
GATTGTTTGTGGCCTATACT+CGG | 0.520583 | 4_1:-60069996 | Msa0560790:CDS |
TTACAGCCCTCAGAAATCAT+TGG | 0.522947 | 4_1:-60069932 | Msa0560790:CDS |
TATATAATATATACCTTCCG+AGG | 0.524794 | 4_1:+60070248 | None:intergenic |
TTACGTACCAGTAAGTGGAT+TGG | 0.525505 | 4_1:+60073722 | None:intergenic |
ATAGCAACTCCTCGAAGAGC+CGG | 0.527327 | 4_1:-60073747 | Msa0560790:five_prime_UTR |
TACCTCTGGTACAGTAAGCC+TGG | 0.531168 | 4_1:+60073843 | None:intergenic |
TACCCCATAGCACCGAGTAT+AGG | 0.533297 | 4_1:+60069984 | None:intergenic |
CCAATTACTTTATATATAGG+AGG | 0.537002 | 4_1:-60073939 | Msa0560790:five_prime_UTR |
GCTATGCTTGATTGAGGGCA+TGG | 0.539116 | 4_1:+60070645 | None:intergenic |
ACCAGCCTTGCTAATGGTTG+GGG | 0.550467 | 4_1:-60071789 | Msa0560790:CDS |
CTTTCGAAAATAAGAGCAAG+AGG | 0.553483 | 4_1:+60071653 | None:intergenic |
GCATGGGTCGTACAGAAGAA+AGG | 0.553756 | 4_1:-60070355 | Msa0560790:CDS |
TCAAAGCTATGCTTGATTGA+GGG | 0.556100 | 4_1:+60070640 | None:intergenic |
TGCAGTCTGATCTTGAAGAT+GGG | 0.567743 | 4_1:-60071833 | Msa0560790:CDS |
GTTGAGTCCATGAGCATCGA+TGG | 0.569176 | 4_1:-60069882 | Msa0560790:exon |
TATCCCAACCAAGCTTCCAC+TGG | 0.569343 | 4_1:+60070556 | None:intergenic |
AATGATTCTTGTCATGGCAT+GGG | 0.571068 | 4_1:-60070371 | Msa0560790:CDS |
TAACTTCTCATCCAAGAGCA+TGG | 0.575858 | 4_1:+60070273 | None:intergenic |
TAGACCCCAGCCATTAAGGA+AGG | 0.576214 | 4_1:+60071857 | None:intergenic |
ATCATCACCAATGATTTCTG+AGG | 0.576653 | 4_1:+60069925 | None:intergenic |
ATAATCCACTTAGAAGTGAA+AGG | 0.580234 | 4_1:+60071367 | None:intergenic |
CGCTGCAAAGGCGAGACGAT+AGG | 0.583202 | 4_1:+60071688 | None:intergenic |
TAAATGACCATCGATGCTCA+TGG | 0.585557 | 4_1:+60069875 | None:intergenic |
AATAGTGGTAACCGCTGCAA+AGG | 0.587272 | 4_1:+60071676 | None:intergenic |
AACTATACTTGGATTTGCTG+GGG | 0.597676 | 4_1:-60070952 | Msa0560790:CDS |
ATGAGAAGTTAAACCTCGGA+AGG | 0.598102 | 4_1:-60070261 | Msa0560790:intron |
ACTGAGGACAAACACACGCC+AGG | 0.601216 | 4_1:-60073861 | Msa0560790:five_prime_UTR |
AGAAGTAACGGGAAAGGCAA+AGG | 0.601496 | 4_1:-60070982 | Msa0560790:CDS |
CTATCGTCTCGCCTTTGCAG+CGG | 0.608374 | 4_1:-60071687 | Msa0560790:CDS |
CACGGCCAAGACAAAAGTGA+CGG | 0.610470 | 4_1:+60071139 | None:intergenic |
TTGCACCCCAACCATTAGCA+AGG | 0.612822 | 4_1:+60071784 | None:intergenic |
TGCCAACAAATCAATTAGCA+AGG | 0.616435 | 4_1:-60073978 | Msa0560790:five_prime_UTR |
GTGATGATTCCGAAGCTGCA+AGG | 0.619485 | 4_1:-60069910 | Msa0560790:CDS |
GATGCTCATGGACTCAACAA+TGG | 0.622052 | 4_1:+60069887 | None:intergenic |
TTGGCGAGAAGTAACGGGAA+AGG | 0.625976 | 4_1:-60070988 | Msa0560790:CDS |
GCCAAGACAAAAGTGACGGA+GGG | 0.626370 | 4_1:+60071143 | None:intergenic |
GGCCAAGACAAAAGTGACGG+AGG | 0.627973 | 4_1:+60071142 | None:intergenic |
CGCCAGGCTTACTGTACCAG+AGG | 0.628478 | 4_1:-60073845 | Msa0560790:five_prime_UTR |
TCATCACCAATGATTTCTGA+GGG | 0.628675 | 4_1:+60069926 | None:intergenic |
TTGAGAGGGATTTGAACCAG+TGG | 0.633369 | 4_1:-60070572 | Msa0560790:CDS |
GGCCTATACTCGGTGCTATG+GGG | 0.636037 | 4_1:-60069986 | Msa0560790:CDS |
ACTCTCACTCTTACTACACA+TGG | 0.641908 | 4_1:-60069692 | Msa0560790:three_prime_UTR |
CAGTAAACACAAAGCACCAG+AGG | 0.643966 | 4_1:-60073885 | Msa0560790:five_prime_UTR |
AGACCCCAGCCATTAAGGAA+GGG | 0.648693 | 4_1:+60071858 | None:intergenic |
TAGAACACCTAACAATTCAG+TGG | 0.656150 | 4_1:+60070824 | None:intergenic |
ACAAAGCACCAGAGGTACTG+AGG | 0.658480 | 4_1:-60073877 | Msa0560790:five_prime_UTR |
GGATCCAAAGAACGACCACA+CGG | 0.660238 | 4_1:-60070865 | Msa0560790:CDS |
TTGGATGAGAAGTTAAACCT+CGG | 0.681264 | 4_1:-60070265 | Msa0560790:CDS |
TTAAACATACCCGAAAGACA+CGG | 0.692447 | 4_1:+60071121 | None:intergenic |
TGTGTGTATAGTATACTAGG+AGG | 0.696059 | 4_1:-60070025 | Msa0560790:intron |
CATCAGTGACACGTTCCGTG+TGG | 0.704527 | 4_1:+60070850 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTTATTTTTAAAATAAATTG+TGG | + | chr4_1:60070767-60070786 | None:intergenic | 10.0% |
!!! | AATTTTGTCAAAAAAAAAAA+TGG | + | chr4_1:60070896-60070915 | None:intergenic | 10.0% |
!! | CATAATAATTCAAAAAAATT+AGG | + | chr4_1:60071395-60071414 | None:intergenic | 10.0% |
!! | CAATAATAAATAAAACTAAA+AGG | + | chr4_1:60071603-60071622 | None:intergenic | 10.0% |
!!! | TTTAGTTTTATTTATTATTG+TGG | - | chr4_1:60071603-60071622 | Msa0560790:intron | 10.0% |
!!! | TTAGTTTTATTTATTATTGT+GGG | - | chr4_1:60071604-60071623 | Msa0560790:intron | 10.0% |
!! | ATATATAAAGTAATTGGATT+GGG | + | chr4_1:60069644-60069663 | None:intergenic | 15.0% |
!! | TATATATAAAGTAATTGGAT+TGG | + | chr4_1:60069645-60069664 | None:intergenic | 15.0% |
!! | AATCCAATTACTTTATATAT+AGG | - | chr4_1:60069644-60069663 | Msa0560790:three_prime_UTR | 15.0% |
!! | AACATTGCATAATATATTTA+GGG | + | chr4_1:60070212-60070231 | None:intergenic | 15.0% |
!!! | TTTTAAGAAACTAGTTTTTT+GGG | - | chr4_1:60070822-60070841 | Msa0560790:CDS | 15.0% |
!! | TTAATGCAAGTATATTAATA+TGG | + | chr4_1:60070927-60070946 | None:intergenic | 15.0% |
!!! | AAAGGATGAAAATTTTATAA+TGG | + | chr4_1:60071585-60071604 | None:intergenic | 15.0% |
!!! | ATTATAATTTAATTTCCCTT+AGG | - | chr4_1:60071640-60071659 | Msa0560790:intron | 15.0% |
!! | GAAATTCAATATAAAGAATA+TGG | + | chr4_1:60072042-60072061 | None:intergenic | 15.0% |
!! | ATAATGACTTATATATATAC+AGG | - | chr4_1:60072164-60072183 | Msa0560790:intron | 15.0% |
!!! | GTTAATTGTTTTAATTTACA+TGG | - | chr4_1:60072892-60072911 | Msa0560790:intron | 15.0% |
!! | TTAATGTGTTAATTATTTGA+AGG | - | chr4_1:60073173-60073192 | Msa0560790:intron | 15.0% |
!! | TAATGTGTTAATTATTTGAA+GGG | - | chr4_1:60073174-60073193 | Msa0560790:intron | 15.0% |
!! | TATAATATAACAACTTCAAA+TGG | + | chr4_1:60073842-60073861 | None:intergenic | 15.0% |
!! | TATATACTATTCAATGTATA+TGG | - | chr4_1:60073961-60073980 | Msa0560790:five_prime_UTR | 15.0% |
!!! | TTTTGTTGTATCTATTTTCT+TGG | + | chr4_1:60069771-60069790 | None:intergenic | 20.0% |
!!! | TGTTAGAGGTTATAATTTTT+AGG | - | chr4_1:60069912-60069931 | Msa0560790:CDS | 20.0% |
!! | AAATAATTGAAATACTGTGT+TGG | + | chr4_1:60070071-60070090 | None:intergenic | 20.0% |
!! | GAACATTGCATAATATATTT+AGG | + | chr4_1:60070213-60070232 | None:intergenic | 20.0% |
!! | TATTAGAAAATTGTGAAAAG+TGG | - | chr4_1:60070416-60070435 | Msa0560790:intron | 20.0% |
!! | TGCAAGACTATTAAAAATAT+GGG | + | chr4_1:60070540-60070559 | None:intergenic | 20.0% |
!! | ATAAACTTGATTTAAATTGC+TGG | + | chr4_1:60070580-60070599 | None:intergenic | 20.0% |
!!! | TTTATGAATTGTTAGTTTAG+TGG | - | chr4_1:60070595-60070614 | Msa0560790:CDS | 20.0% |
!! | AACTATATTCTTCAATGTTA+CGG | + | chr4_1:60070634-60070653 | None:intergenic | 20.0% |
!! | AATACGGATGATAATAAAAA+TGG | + | chr4_1:60070729-60070748 | None:intergenic | 20.0% |
!!! | CTTTTAAGAAACTAGTTTTT+TGG | - | chr4_1:60070821-60070840 | Msa0560790:CDS | 20.0% |
!! | GATAGTAAAAGAAAATAGTT+TGG | + | chr4_1:60070849-60070868 | None:intergenic | 20.0% |
!! | AAATGGTTCAAAATTTAATC+CGG | + | chr4_1:60070879-60070898 | None:intergenic | 20.0% |
!!! | AAAATATTTCAACGTGTTTT+TGG | + | chr4_1:60071316-60071335 | None:intergenic | 20.0% |
!!! | TTGAATTTTAGAATCCAAAT+AGG | - | chr4_1:60071334-60071353 | Msa0560790:intron | 20.0% |
!! | TAATGAAAATGAAAACCTAA+GGG | + | chr4_1:60071658-60071677 | None:intergenic | 20.0% |
!! | ATAATGAAAATGAAAACCTA+AGG | + | chr4_1:60071659-60071678 | None:intergenic | 20.0% |
!!! | GGTAATTAATTTGAAACAAT+AGG | - | chr4_1:60071955-60071974 | Msa0560790:intron | 20.0% |
!! | AAGAAAATTTATATGATGAG+AGG | + | chr4_1:60072064-60072083 | None:intergenic | 20.0% |
!! | TTATTTCAAAACCTATTCTA+CGG | - | chr4_1:60072368-60072387 | Msa0560790:intron | 20.0% |
!! | TTAATTCACAACTAGAATTA+TGG | - | chr4_1:60073097-60073116 | Msa0560790:intron | 20.0% |
!! | ATTTCACAAATCATATGATA+TGG | + | chr4_1:60073123-60073142 | None:intergenic | 20.0% |
!!! | TAGTATATAGATCTCTAAAA+TGG | + | chr4_1:60073950-60073969 | None:intergenic | 20.0% |
! | CCTCCTATATATAAAGTAAT+TGG | + | chr4_1:60069650-60069669 | None:intergenic | 25.0% |
! | CCAATTACTTTATATATAGG+AGG | - | chr4_1:60069647-60069666 | Msa0560790:three_prime_UTR | 25.0% |
!!! | ACCTTTTCTCTATACTTTTT+GGG | + | chr4_1:60069681-60069700 | None:intergenic | 25.0% |
!!! | AGGTTATAATTTTTAGGTCA+TGG | - | chr4_1:60069918-60069937 | Msa0560790:CDS | 25.0% |
!!! | AATTTTTAGGTCATGGTAAT+CGG | - | chr4_1:60069925-60069944 | Msa0560790:CDS | 25.0% |
! | CACACTTATTCATCTTATAA+AGG | + | chr4_1:60070173-60070192 | None:intergenic | 25.0% |
! | CTTTATAAGATGAATAAGTG+TGG | - | chr4_1:60070171-60070190 | Msa0560790:intron | 25.0% |
!! | CATTGTAAGTTTAGTTTAGT+TGG | + | chr4_1:60070239-60070258 | None:intergenic | 25.0% |
! | CTGCAAGACTATTAAAAATA+TGG | + | chr4_1:60070541-60070560 | None:intergenic | 25.0% |
! | GGAAAAATTATTATCCATAG+TGG | + | chr4_1:60070687-60070706 | None:intergenic | 25.0% |
!! | AGTATTTTACACGTGTTTTT+AGG | + | chr4_1:60071057-60071076 | None:intergenic | 25.0% |
! | AACATAAAACAAATGAACGT+TGG | + | chr4_1:60071514-60071533 | None:intergenic | 25.0% |
! | AAGGAGTAGAATTTGATATT+TGG | - | chr4_1:60072678-60072697 | Msa0560790:intron | 25.0% |
!!! | TGTTTTAATTTACATGGCAT+AGG | - | chr4_1:60072898-60072917 | Msa0560790:intron | 25.0% |
!!! | GCAATACAATGTGTTATTTT+TGG | - | chr4_1:60072983-60073002 | Msa0560790:intron | 25.0% |
! | TATATAATATATACCTTCCG+AGG | + | chr4_1:60073341-60073360 | None:intergenic | 25.0% |
! | TTCATTTAAATGAGTATGCA+TGG | - | chr4_1:60073372-60073391 | Msa0560790:intron | 25.0% |
! | ACCAATTTGAATGTTGTTAT+TGG | - | chr4_1:60073412-60073431 | Msa0560790:intron | 25.0% |
! | TCCAATAACAACATTCAAAT+TGG | + | chr4_1:60073416-60073435 | None:intergenic | 25.0% |
!!! | TGTTTTTCTTTTTGTTTTGC+TGG | - | chr4_1:60073485-60073504 | Msa0560790:intron | 25.0% |
!! | TTCCTTGCTAATTGATTTGT+TGG | + | chr4_1:60069613-60069632 | None:intergenic | 30.0% |
! | TCCCAAAAAGTATAGAGAAA+AGG | - | chr4_1:60069677-60069696 | Msa0560790:three_prime_UTR | 30.0% |
! | GACCTTTTCTCTATACTTTT+TGG | + | chr4_1:60069682-60069701 | None:intergenic | 30.0% |
AACAACTAAAAACACAACCA+AGG | - | chr4_1:60069798-60069817 | Msa0560790:three_prime_UTR | 30.0% | |
!!! | TAGATGTCTTGTTTTGTTAG+AGG | - | chr4_1:60069898-60069917 | Msa0560790:CDS | 30.0% |
TTCAATATTGTGTTGGAGAA+TGG | + | chr4_1:60069997-60070016 | None:intergenic | 30.0% | |
TGTCTGTGTGATACTAATTA+AGG | - | chr4_1:60070373-60070392 | Msa0560790:CDS | 30.0% | |
TAGTTCAAATCTCATTCACA+TGG | - | chr4_1:60070649-60070668 | Msa0560790:CDS | 30.0% | |
GGTTATAAAAGAATTGACGA+TGG | + | chr4_1:60070708-60070727 | None:intergenic | 30.0% | |
AACATTCATGCATTAAGTGT+TGG | - | chr4_1:60070957-60070976 | Msa0560790:CDS | 30.0% | |
ACATTCATGCATTAAGTGTT+GGG | - | chr4_1:60070958-60070977 | Msa0560790:CDS | 30.0% | |
!!! | ATTGTGTTTTGGTAAAGACA+TGG | + | chr4_1:60071005-60071024 | None:intergenic | 30.0% |
! | AAGCAACTTTCATTGTGTTT+TGG | + | chr4_1:60071016-60071035 | None:intergenic | 30.0% |
TAAAATACTTAAATACCCCC+AGG | - | chr4_1:60071068-60071087 | Msa0560790:intron | 30.0% | |
TTAGTGATAGTTAACTACCT+GGG | + | chr4_1:60071088-60071107 | None:intergenic | 30.0% | |
!! | TTAAGGGGTTTTATGCAATT+CGG | + | chr4_1:60071288-60071307 | None:intergenic | 30.0% |
!!! | GTGTTTTTGGAAGTTTTAAG+GGG | + | chr4_1:60071303-60071322 | None:intergenic | 30.0% |
!!! | CGTGTTTTTGGAAGTTTTAA+GGG | + | chr4_1:60071304-60071323 | None:intergenic | 30.0% |
!!! | ACGTGTTTTTGGAAGTTTTA+AGG | + | chr4_1:60071305-60071324 | None:intergenic | 30.0% |
! | AAAACAAATGAACGTTGGTT+CGG | + | chr4_1:60071509-60071528 | None:intergenic | 30.0% |
GATACTCATTCCATCATATA+TGG | + | chr4_1:60071865-60071884 | None:intergenic | 30.0% | |
CATTATCAGTTGTGAATAGT+TGG | + | chr4_1:60072150-60072169 | None:intergenic | 30.0% | |
! | TTTTACCTTTCACTTCTAAG+TGG | - | chr4_1:60072214-60072233 | Msa0560790:intron | 30.0% |
ATAATCCACTTAGAAGTGAA+AGG | + | chr4_1:60072222-60072241 | None:intergenic | 30.0% | |
TTGCATTGCATCACATATAT+AGG | + | chr4_1:60072328-60072347 | None:intergenic | 30.0% | |
GTAGTTTCGAGGAATTAAAT+TGG | - | chr4_1:60072579-60072598 | Msa0560790:intron | 30.0% | |
ATTAAATTGGCGAGAAGTAA+CGG | - | chr4_1:60072592-60072611 | Msa0560790:intron | 30.0% | |
!!! | TTGGTGTTGACATTTTACAA+AGG | - | chr4_1:60072659-60072678 | Msa0560790:intron | 30.0% |
TCCAAAAGATTGATTGCAAA+AGG | + | chr4_1:60072704-60072723 | None:intergenic | 30.0% | |
!! | ATAGCTTTGATGTCTGTAAT+AGG | - | chr4_1:60072959-60072978 | Msa0560790:intron | 30.0% |
!!! | TTTTTGGTTTCATTGTTGAG+AGG | - | chr4_1:60072999-60073018 | Msa0560790:intron | 30.0% |
!!! | TTTTGGTTTCATTGTTGAGA+GGG | - | chr4_1:60073000-60073019 | Msa0560790:intron | 30.0% |
!! | GTGAAATTGTTGACTCATAA+AGG | - | chr4_1:60073136-60073155 | Msa0560790:intron | 30.0% |
TGGAATAATGATTCTTGTCA+TGG | - | chr4_1:60073209-60073228 | Msa0560790:intron | 30.0% | |
TGGATCTGATGATATATAGT+TGG | - | chr4_1:60073432-60073451 | Msa0560790:intron | 30.0% | |
TTGTGTGTGTATAGTATACT+AGG | - | chr4_1:60073558-60073577 | Msa0560790:intron | 30.0% | |
TGCCAACAAATCAATTAGCA+AGG | - | chr4_1:60069608-60069627 | Msa0560790:three_prime_UTR | 35.0% | |
!!! | TCTCTATACTTTTTGGGACT+TGG | + | chr4_1:60069675-60069694 | None:intergenic | 35.0% |
AAAAACACAACCAAGGAACA+AGG | - | chr4_1:60069805-60069824 | Msa0560790:three_prime_UTR | 35.0% | |
! | AGGAGTTGCTATCTTTTTCT+TGG | + | chr4_1:60069831-60069850 | None:intergenic | 35.0% |
TTGTGTTGGAGAATGGTAAT+TGG | + | chr4_1:60069990-60070009 | None:intergenic | 35.0% | |
!! | CGTTGACTTCAATATTGTGT+TGG | + | chr4_1:60070004-60070023 | None:intergenic | 35.0% |
TGAAATACTGTGTTGGAGAA+TGG | + | chr4_1:60070064-60070083 | None:intergenic | 35.0% | |
ATCTCGTGCACTAGTTAAAA+AGG | + | chr4_1:60070505-60070524 | None:intergenic | 35.0% | |
GGTTATTAATCTCACCACTA+TGG | - | chr4_1:60070670-60070689 | Msa0560790:intron | 35.0% | |
GGTTCAAAATTTAATCCGGT+CGG | + | chr4_1:60070875-60070894 | None:intergenic | 35.0% | |
TAGTGATAGTTAACTACCTG+GGG | + | chr4_1:60071087-60071106 | None:intergenic | 35.0% | |
GTTAGTGATAGTTAACTACC+TGG | + | chr4_1:60071089-60071108 | None:intergenic | 35.0% | |
CACATGTTTGTAGGAAACAT+TGG | - | chr4_1:60071162-60071181 | Msa0560790:CDS | 35.0% | |
TACAAGCTTGCCATATATGA+TGG | - | chr4_1:60071852-60071871 | Msa0560790:exon | 35.0% | |
AATAAGAGCAAGAGGAATAG+TGG | + | chr4_1:60071928-60071947 | None:intergenic | 35.0% | |
CTTTCGAAAATAAGAGCAAG+AGG | + | chr4_1:60071936-60071955 | None:intergenic | 35.0% | |
!!! | CTCTTGCTCTTATTTTCGAA+AGG | - | chr4_1:60071934-60071953 | Msa0560790:intron | 35.0% |
TTAAACATACCCGAAAGACA+CGG | + | chr4_1:60072468-60072487 | None:intergenic | 35.0% | |
TTAAATTGGCGAGAAGTAAC+GGG | - | chr4_1:60072593-60072612 | Msa0560790:intron | 35.0% | |
AAGGTTGTAGGAACTATACT+TGG | - | chr4_1:60072623-60072642 | Msa0560790:intron | 35.0% | |
! | GAACTATACTTGGATTTGCT+GGG | - | chr4_1:60072633-60072652 | Msa0560790:intron | 35.0% |
!! | AACTATACTTGGATTTGCTG+GGG | - | chr4_1:60072634-60072653 | Msa0560790:intron | 35.0% |
! | GCCTTTTGCAATCAATCTTT+TGG | - | chr4_1:60072700-60072719 | Msa0560790:intron | 35.0% |
TAGAACACCTAACAATTCAG+TGG | + | chr4_1:60072765-60072784 | None:intergenic | 35.0% | |
TCAAAGCTATGCTTGATTGA+GGG | + | chr4_1:60072949-60072968 | None:intergenic | 35.0% | |
ATCAAAGCTATGCTTGATTG+AGG | + | chr4_1:60072950-60072969 | None:intergenic | 35.0% | |
GAAGCATACCGAAAAAACAA+CGG | + | chr4_1:60073068-60073087 | None:intergenic | 35.0% | |
TAATGATTCTTGTCATGGCA+TGG | - | chr4_1:60073214-60073233 | Msa0560790:intron | 35.0% | |
AATGATTCTTGTCATGGCAT+GGG | - | chr4_1:60073215-60073234 | Msa0560790:intron | 35.0% | |
TTGAAAGCAGACGCATATAA+AGG | + | chr4_1:60073258-60073277 | None:intergenic | 35.0% | |
!! | GCTACAATCAAAAGCATTAG+AGG | + | chr4_1:60073282-60073301 | None:intergenic | 35.0% |
TTGGATGAGAAGTTAAACCT+CGG | - | chr4_1:60073321-60073340 | Msa0560790:intron | 35.0% | |
! | AAATTGGTTCAATCTCTGCA+AGG | + | chr4_1:60073400-60073419 | None:intergenic | 35.0% |
TGTGTGTATAGTATACTAGG+AGG | - | chr4_1:60073561-60073580 | Msa0560790:intron | 35.0% | |
TCATCACCAATGATTTCTGA+GGG | + | chr4_1:60073663-60073682 | None:intergenic | 35.0% | |
ATCATCACCAATGATTTCTG+AGG | + | chr4_1:60073664-60073683 | None:intergenic | 35.0% | |
! | AAATTTTCACTCAAGAGTCG+AGG | - | chr4_1:60073742-60073761 | Msa0560790:five_prime_UTR | 35.0% |
!! | CTATTTTCTTGGAGTACCTC+TGG | + | chr4_1:60069760-60069779 | None:intergenic | 40.0% |
!!! | TTTTTCTTGGCCTTGTTCCT+TGG | + | chr4_1:60069818-60069837 | None:intergenic | 40.0% |
! | TACGTACCAGTAAGTGGATT+GGG | + | chr4_1:60069866-60069885 | None:intergenic | 40.0% |
TTACGTACCAGTAAGTGGAT+TGG | + | chr4_1:60069867-60069886 | None:intergenic | 40.0% | |
CAATGTTACGTACCAGTAAG+TGG | + | chr4_1:60069872-60069891 | None:intergenic | 40.0% | |
! | TCTTTTACTATCCAACCGAC+CGG | - | chr4_1:60070857-60070876 | Msa0560790:CDS | 40.0% |
CAAAATTTAATCCGGTCGGT+TGG | + | chr4_1:60070871-60070890 | None:intergenic | 40.0% | |
AGTGATAGTTAACTACCTGG+GGG | + | chr4_1:60071086-60071105 | None:intergenic | 40.0% | |
CAACGGTAGTTAACTACAGT+CGG | + | chr4_1:60071126-60071145 | None:intergenic | 40.0% | |
GACTGTAGTTAACTACCGTT+GGG | - | chr4_1:60071125-60071144 | Msa0560790:intron | 40.0% | |
! | GTTAACTACCGTTGGGTTTT+TGG | - | chr4_1:60071132-60071151 | Msa0560790:CDS | 40.0% |
GAGAATGACCAAAAACCCAA+CGG | + | chr4_1:60071143-60071162 | None:intergenic | 40.0% | |
GGTCATTCTCACATGTTTGT+AGG | - | chr4_1:60071153-60071172 | Msa0560790:CDS | 40.0% | |
TCATAGGGTGGGAAAAGTAA+TGG | - | chr4_1:60071369-60071388 | Msa0560790:CDS | 40.0% | |
ATCAATGGTGCGATGACATT+TGG | + | chr4_1:60071437-60071456 | None:intergenic | 40.0% | |
!! | AGTTTGACTCGGACTATCAA+TGG | + | chr4_1:60071452-60071471 | None:intergenic | 40.0% |
TCACGAACGTAAGTTTGACT+CGG | + | chr4_1:60071463-60071482 | None:intergenic | 40.0% | |
ACCATACTTCCCTTCCTTAA+TGG | - | chr4_1:60071719-60071738 | Msa0560790:CDS | 40.0% | |
TTGCAGTCTGATCTTGAAGA+TGG | - | chr4_1:60071752-60071771 | Msa0560790:CDS | 40.0% | |
TGCAGTCTGATCTTGAAGAT+GGG | - | chr4_1:60071753-60071772 | Msa0560790:CDS | 40.0% | |
AACACTCTCCAAGTCATCTT+CGG | + | chr4_1:60072196-60072215 | None:intergenic | 40.0% | |
AATGCAATGCAATGCAACAG+TGG | - | chr4_1:60072341-60072360 | Msa0560790:intron | 40.0% | |
AAACAAGAGCTCCGTAGAAT+AGG | + | chr4_1:60072382-60072401 | None:intergenic | 40.0% | |
TGATCGTCTATGTAGTTTCG+AGG | - | chr4_1:60072568-60072587 | Msa0560790:intron | 40.0% | |
GGAACTATACTTGGATTTGC+TGG | - | chr4_1:60072632-60072651 | Msa0560790:intron | 40.0% | |
GATGCTACCACTGAATTGTT+AGG | - | chr4_1:60072755-60072774 | Msa0560790:intron | 40.0% | |
! | GTTGCTTCTGTTTCTCAATC+TGG | - | chr4_1:60072798-60072817 | Msa0560790:intron | 40.0% |
ATACCGAAAAAACAACGGTG+AGG | + | chr4_1:60073063-60073082 | None:intergenic | 40.0% | |
! | TTGAAGGGAGTTTTTGCATC+TGG | - | chr4_1:60073189-60073208 | Msa0560790:intron | 40.0% |
TAACTTCTCATCCAAGAGCA+TGG | + | chr4_1:60073316-60073335 | None:intergenic | 40.0% | |
ATGAGAAGTTAAACCTCGGA+AGG | - | chr4_1:60073325-60073344 | Msa0560790:intron | 40.0% | |
GATTGTTTGTGGCCTATACT+CGG | - | chr4_1:60073590-60073609 | Msa0560790:intron | 40.0% | |
TTACAGCCCTCAGAAATCAT+TGG | - | chr4_1:60073654-60073673 | Msa0560790:intron | 40.0% | |
TAAATGACCATCGATGCTCA+TGG | + | chr4_1:60073714-60073733 | None:intergenic | 40.0% | |
AGTCATGCGTACATAATAGC+TGG | + | chr4_1:60073877-60073896 | None:intergenic | 40.0% | |
ACTCTCACTCTTACTACACA+TGG | - | chr4_1:60073894-60073913 | Msa0560790:five_prime_UTR | 40.0% | |
! | CAGTAAACACAAAGCACCAG+AGG | - | chr4_1:60069701-60069720 | Msa0560790:three_prime_UTR | 45.0% |
!! | TCATGCATTAAGTGTTGGGC+TGG | - | chr4_1:60070962-60070981 | Msa0560790:CDS | 45.0% |
!! | CATGCATTAAGTGTTGGGCT+GGG | - | chr4_1:60070963-60070982 | Msa0560790:CDS | 45.0% |
CGACTGTAGTTAACTACCGT+TGG | - | chr4_1:60071124-60071143 | Msa0560790:intron | 45.0% | |
GCCATTAAGGAAGGGAAGTA+TGG | + | chr4_1:60071723-60071742 | None:intergenic | 45.0% | |
TACTTCCCTTCCTTAATGGC+TGG | - | chr4_1:60071723-60071742 | Msa0560790:CDS | 45.0% | |
ACTTCCCTTCCTTAATGGCT+GGG | - | chr4_1:60071724-60071743 | Msa0560790:CDS | 45.0% | |
!! | CATTAGCAAGGCTGGTTTCA+AGG | + | chr4_1:60071793-60071812 | None:intergenic | 45.0% |
CTTGAAACCAGCCTTGCTAA+TGG | - | chr4_1:60071791-60071810 | Msa0560790:CDS | 45.0% | |
AAACCAGCCTTGCTAATGGT+TGG | - | chr4_1:60071795-60071814 | Msa0560790:CDS | 45.0% | |
AACCAGCCTTGCTAATGGTT+GGG | - | chr4_1:60071796-60071815 | Msa0560790:CDS | 45.0% | |
AATAGTGGTAACCGCTGCAA+AGG | + | chr4_1:60071913-60071932 | None:intergenic | 45.0% | |
! | CAAAAGTGACGGAGGGAATA+AGG | + | chr4_1:60072439-60072458 | None:intergenic | 45.0% |
TTTGTCTTGGCCGTGTCTTT+CGG | - | chr4_1:60072455-60072474 | Msa0560790:intron | 45.0% | |
! | AGAAGTAACGGGAAAGGCAA+AGG | - | chr4_1:60072604-60072623 | Msa0560790:intron | 45.0% |
! | CTCAATCTGGCTCATCATTC+AGG | - | chr4_1:60072811-60072830 | Msa0560790:intron | 45.0% |
TTGAGAGGGATTTGAACCAG+TGG | - | chr4_1:60073014-60073033 | Msa0560790:intron | 45.0% | |
GATTTGAACCAGTGGAAGCT+TGG | - | chr4_1:60073022-60073041 | Msa0560790:intron | 45.0% | |
!!! | GCTCCTCACCGTTGTTTTTT+CGG | - | chr4_1:60073057-60073076 | Msa0560790:intron | 45.0% |
!! | GGAGGAGTGTTGATTGTTTG+TGG | - | chr4_1:60073579-60073598 | Msa0560790:intron | 45.0% |
GATGCTCATGGACTCAACAA+TGG | + | chr4_1:60073702-60073721 | None:intergenic | 45.0% | |
!! | GATTTAAAAATATTTAAATA+CGG | + | chr4_1:60070745-60070764 | None:intergenic | 5.0% |
!! | ACAAAGCACCAGAGGTACTG+AGG | - | chr4_1:60069709-60069728 | Msa0560790:three_prime_UTR | 50.0% |
GTGTTTGTCCTCAGTACCTC+TGG | + | chr4_1:60069720-60069739 | None:intergenic | 50.0% | |
TACCTCTGGTACAGTAAGCC+TGG | + | chr4_1:60069746-60069765 | None:intergenic | 50.0% | |
ATAGCAACTCCTCGAAGAGC+CGG | - | chr4_1:60069839-60069858 | Msa0560790:three_prime_UTR | 50.0% | |
!! | ACCAGTAAGTGGATTGGGTC+CGG | + | chr4_1:60069861-60069880 | None:intergenic | 50.0% |
GGCTGGGCATAAGTCTAGAT+GGG | - | chr4_1:60070979-60070998 | Msa0560790:CDS | 50.0% | |
CTGTGAGAAGCTCATAGGGT+GGG | + | chr4_1:60071239-60071258 | None:intergenic | 50.0% | |
GAGCCTGTGAGAAGCTCATA+GGG | + | chr4_1:60071243-60071262 | None:intergenic | 50.0% | |
AGAGCCTGTGAGAAGCTCAT+AGG | + | chr4_1:60071244-60071263 | None:intergenic | 50.0% | |
CTCACAGGCTCTATGCAGTT+CGG | - | chr4_1:60071252-60071271 | Msa0560790:intron | 50.0% | |
GAGCTTCTCGACGTCCTATT+TGG | + | chr4_1:60071351-60071370 | None:intergenic | 50.0% | |
TAGGACGTCGAGAAGCTCAT+AGG | - | chr4_1:60071353-60071372 | Msa0560790:intron | 50.0% | |
AGGACGTCGAGAAGCTCATA+GGG | - | chr4_1:60071354-60071373 | Msa0560790:intron | 50.0% | |
CTTCCCTTCCTTAATGGCTG+GGG | - | chr4_1:60071725-60071744 | Msa0560790:CDS | 50.0% | |
AGACCCCAGCCATTAAGGAA+GGG | + | chr4_1:60071731-60071750 | None:intergenic | 50.0% | |
TAGACCCCAGCCATTAAGGA+AGG | + | chr4_1:60071732-60071751 | None:intergenic | 50.0% | |
GCAATAGACCCCAGCCATTA+AGG | + | chr4_1:60071736-60071755 | None:intergenic | 50.0% | |
ACCAGCCTTGCTAATGGTTG+GGG | - | chr4_1:60071797-60071816 | Msa0560790:CDS | 50.0% | |
TTGCACCCCAACCATTAGCA+AGG | + | chr4_1:60071805-60071824 | None:intergenic | 50.0% | |
GGAAGAGACCGAAGATGACT+TGG | - | chr4_1:60072185-60072204 | Msa0560790:intron | 50.0% | |
!!! | TCCCTCCGTCACTTTTGTCT+TGG | - | chr4_1:60072442-60072461 | Msa0560790:intron | 50.0% |
! | GCCAAGACAAAAGTGACGGA+GGG | + | chr4_1:60072446-60072465 | None:intergenic | 50.0% |
CACGGCCAAGACAAAAGTGA+CGG | + | chr4_1:60072450-60072469 | None:intergenic | 50.0% | |
TTGTCTTGGCCGTGTCTTTC+GGG | - | chr4_1:60072456-60072475 | Msa0560790:intron | 50.0% | |
! | TTGGCGAGAAGTAACGGGAA+AGG | - | chr4_1:60072598-60072617 | Msa0560790:intron | 50.0% |
ACGGGAAAGGCAAAGGTTGT+AGG | - | chr4_1:60072611-60072630 | Msa0560790:intron | 50.0% | |
!! | ACTTGGATTTGCTGGGGCAT+TGG | - | chr4_1:60072640-60072659 | Msa0560790:intron | 50.0% |
GGATCCAAAGAACGACCACA+CGG | - | chr4_1:60072721-60072740 | Msa0560790:intron | 50.0% | |
GCTATGCTTGATTGAGGGCA+TGG | + | chr4_1:60072944-60072963 | None:intergenic | 50.0% | |
TGAACCAGTGGAAGCTTGGT+TGG | - | chr4_1:60073026-60073045 | Msa0560790:intron | 50.0% | |
GAACCAGTGGAAGCTTGGTT+GGG | - | chr4_1:60073027-60073046 | Msa0560790:intron | 50.0% | |
TATCCCAACCAAGCTTCCAC+TGG | + | chr4_1:60073033-60073052 | None:intergenic | 50.0% | |
GGAAGCTTGGTTGGGATATC+AGG | - | chr4_1:60073035-60073054 | Msa0560790:intron | 50.0% | |
GCATGGGTCGTACAGAAGAA+AGG | - | chr4_1:60073231-60073250 | Msa0560790:intron | 50.0% | |
ATTCGTCGCATCCATGCTCT+TGG | - | chr4_1:60073302-60073321 | Msa0560790:intron | 50.0% | |
!! | TGGCCTATACTCGGTGCTAT+GGG | - | chr4_1:60073599-60073618 | Msa0560790:intron | 50.0% |
! | TACCCCATAGCACCGAGTAT+AGG | + | chr4_1:60073605-60073624 | None:intergenic | 50.0% |
!! | TACTCGGTGCTATGGGGTAA+AGG | - | chr4_1:60073606-60073625 | Msa0560790:intron | 50.0% |
GTGATGATTCCGAAGCTGCA+AGG | - | chr4_1:60073676-60073695 | Msa0560790:intron | 50.0% | |
! | CAACAATGGCCTTGCAGCTT+CGG | + | chr4_1:60073688-60073707 | None:intergenic | 50.0% |
!! | GTTGAGTCCATGAGCATCGA+TGG | - | chr4_1:60073704-60073723 | Msa0560790:intron | 50.0% |
ACTGAGGACAAACACACGCC+AGG | - | chr4_1:60069725-60069744 | Msa0560790:three_prime_UTR | 55.0% | |
GGGCTGGGCATAAGTCTAGA+TGG | - | chr4_1:60070978-60070997 | Msa0560790:CDS | 55.0% | |
CCTGTGAGAAGCTCATAGGG+TGG | + | chr4_1:60071240-60071259 | None:intergenic | 55.0% | |
CCACCCTATGAGCTTCTCAC+AGG | - | chr4_1:60071237-60071256 | Msa0560790:intron | 55.0% | |
ACGTCGAGAAGCTCATAGGG+TGG | - | chr4_1:60071357-60071376 | Msa0560790:intron | 55.0% | |
CGTCGAGAAGCTCATAGGGT+GGG | - | chr4_1:60071358-60071377 | Msa0560790:intron | 55.0% | |
ACCCCAACCATTAGCAAGGC+TGG | + | chr4_1:60071801-60071820 | None:intergenic | 55.0% | |
CTATCGTCTCGCCTTTGCAG+CGG | - | chr4_1:60071899-60071918 | Msa0560790:five_prime_UTR | 55.0% | |
GGCCAAGACAAAAGTGACGG+AGG | + | chr4_1:60072447-60072466 | None:intergenic | 55.0% | |
CGTTCCGTGTGGTCGTTCTT+TGG | + | chr4_1:60072728-60072747 | None:intergenic | 55.0% | |
CATCAGTGACACGTTCCGTG+TGG | + | chr4_1:60072739-60072758 | None:intergenic | 55.0% | |
!! | GTGGCCTATACTCGGTGCTA+TGG | - | chr4_1:60073598-60073617 | Msa0560790:intron | 55.0% |
!! | GGCCTATACTCGGTGCTATG+GGG | - | chr4_1:60073600-60073619 | Msa0560790:intron | 55.0% |
CGCCAGGCTTACTGTACCAG+AGG | - | chr4_1:60069741-60069760 | Msa0560790:three_prime_UTR | 60.0% | |
GCCGGACCCAATCCACTTAC+TGG | - | chr4_1:60069857-60069876 | Msa0560790:three_prime_UTR | 60.0% | |
CGCTGCAAAGGCGAGACGAT+AGG | + | chr4_1:60071901-60071920 | None:intergenic | 60.0% | |
GGATTGGGTCCGGCTCTTCG+AGG | + | chr4_1:60069851-60069870 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 60069596 | 60074012 | 60069596 | ID=Msa0560790;Name=Msa0560790 |
chr4_1 | mRNA | 60069596 | 60074012 | 60069596 | ID=Msa0560790-mRNA-1;Parent=Msa0560790;Name=Msa0560790-mRNA-1;_AED=0.11;_eAED=0.11;_QI=359|1|1|1|0.85|0.75|8|296|366 |
chr4_1 | exon | 60069596 | 60070036 | 60069596 | ID=Msa0560790-mRNA-1:exon:18711;Parent=Msa0560790-mRNA-1 |
chr4_1 | exon | 60070262 | 60070413 | 60070262 | ID=Msa0560790-mRNA-1:exon:18710;Parent=Msa0560790-mRNA-1 |
chr4_1 | exon | 60070530 | 60070688 | 60070530 | ID=Msa0560790-mRNA-1:exon:18709;Parent=Msa0560790-mRNA-1 |
chr4_1 | exon | 60070776 | 60071025 | 60070776 | ID=Msa0560790-mRNA-1:exon:18708;Parent=Msa0560790-mRNA-1 |
chr4_1 | exon | 60071131 | 60071247 | 60071131 | ID=Msa0560790-mRNA-1:exon:18707;Parent=Msa0560790-mRNA-1 |
chr4_1 | exon | 60071363 | 60071422 | 60071363 | ID=Msa0560790-mRNA-1:exon:18706;Parent=Msa0560790-mRNA-1 |
chr4_1 | exon | 60071653 | 60071946 | 60071653 | ID=Msa0560790-mRNA-1:exon:18705;Parent=Msa0560790-mRNA-1 |
chr4_1 | exon | 60073730 | 60074012 | 60073730 | ID=Msa0560790-mRNA-1:exon:18704;Parent=Msa0560790-mRNA-1 |
chr4_1 | five_prime_UTR | 60073730 | 60074012 | 60073730 | ID=Msa0560790-mRNA-1:five_prime_utr;Parent=Msa0560790-mRNA-1 |
chr4_1 | five_prime_UTR | 60071871 | 60071946 | 60071871 | ID=Msa0560790-mRNA-1:five_prime_utr;Parent=Msa0560790-mRNA-1 |
chr4_1 | CDS | 60071653 | 60071870 | 60071653 | ID=Msa0560790-mRNA-1:cds;Parent=Msa0560790-mRNA-1 |
chr4_1 | CDS | 60071363 | 60071422 | 60071363 | ID=Msa0560790-mRNA-1:cds;Parent=Msa0560790-mRNA-1 |
chr4_1 | CDS | 60071131 | 60071247 | 60071131 | ID=Msa0560790-mRNA-1:cds;Parent=Msa0560790-mRNA-1 |
chr4_1 | CDS | 60070776 | 60071025 | 60070776 | ID=Msa0560790-mRNA-1:cds;Parent=Msa0560790-mRNA-1 |
chr4_1 | CDS | 60070530 | 60070688 | 60070530 | ID=Msa0560790-mRNA-1:cds;Parent=Msa0560790-mRNA-1 |
chr4_1 | CDS | 60070262 | 60070413 | 60070262 | ID=Msa0560790-mRNA-1:cds;Parent=Msa0560790-mRNA-1 |
chr4_1 | CDS | 60069892 | 60070036 | 60069892 | ID=Msa0560790-mRNA-1:cds;Parent=Msa0560790-mRNA-1 |
chr4_1 | three_prime_UTR | 60069596 | 60069891 | 60069596 | ID=Msa0560790-mRNA-1:three_prime_utr;Parent=Msa0560790-mRNA-1 |
Gene Sequence |
Protein sequence |