AlfalfaGEDB | Msa0639350

M. sativa cultivar zhongmu-4 / Msa0639350

KEGG: -
GO: -
PFAM: PF00892.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639350	XP_013457235.1	97.784	361	8	0	5	365	12	372	0.0	709

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639350	sp\|Q4PT23\|WTR6_ARATH	40.462	346	200	4	19	362	1	342	6.51e-80	251

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004840	Msa0639350	0.800287	1.547147e-48	-8.615850e-47
Msa0096980	Msa0639350	0.806715	7.190389e-50	-8.615850e-47
Msa0145010	Msa0639350	0.810743	9.901977e-51	-8.615850e-47
Msa0189520	Msa0639350	0.814447	1.533605e-51	-8.615850e-47
Msa0271360	Msa0639350	0.806102	9.682718e-50	-8.615850e-47
Msa0560790	Msa0639350	0.827075	1.910905e-54	-8.615850e-47
Msa0614720	Msa0639350	0.820311	7.334999e-53	-8.615850e-47
Msa0639350	Msa0697970	0.835962	1.235934e-56	-8.615850e-47
Msa0639350	Msa1272620	0.802645	5.084694e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639350	MtrunA17_Chr4g0050881	97.740	354	8	0	12	365	1	354	0.0	695
Msa0639350	MtrunA17_Chr2g0278541	58.333	348	139	2	17	358	9	356	1.01e-144	415
Msa0639350	MtrunA17_Chr2g0278551	58.859	333	135	2	17	348	9	340	4.04e-138	398
Msa0639350	MtrunA17_Chr2g0290611	54.896	337	150	2	17	352	9	344	6.45e-129	374
Msa0639350	MtrunA17_Chr4g0050891	53.727	322	146	2	17	335	10	331	6.71e-121	353
Msa0639350	MtrunA17_Chr2g0278561	52.395	334	158	1	19	351	14	347	4.77e-120	352
Msa0639350	MtrunA17_Chr4g0050941	50.541	370	169	3	1	364	1	362	1.88e-116	343
Msa0639350	MtrunA17_Chr2g0332001	50.000	346	160	4	17	353	35	376	2.22e-109	325
Msa0639350	MtrunA17_Chr4g0050931	48.204	334	129	4	19	347	11	305	1.74e-99	297
Msa0639350	MtrunA17_Chr4g0051021	42.943	333	187	3	17	348	11	341	1.76e-91	279

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639350	AT1G25270.1	40.462	346	200	4	19	362	1	342	6.61e-81	251
Msa0639350	AT1G68170.2	41.390	331	193	1	11	340	3	333	2.62e-75	237
Msa0639350	AT1G68170.1	42.105	323	186	1	19	340	1	323	4.54e-75	236
Msa0639350	AT4G08290.1	36.517	356	217	3	17	364	9	363	2.08e-72	230
Msa0639350	AT1G44800.1	37.322	351	208	5	10	357	1	342	1.27e-68	220
Msa0639350	AT5G07050.1	36.827	353	212	6	17	358	14	366	3.33e-67	218
Msa0639350	AT1G09380.1	34.615	364	210	5	21	364	8	363	4.33e-67	216
Msa0639350	AT2G37460.1	33.908	348	216	5	20	364	14	350	8.62e-66	213
Msa0639350	AT4G08300.1	35.244	349	220	3	10	357	1	344	9.02e-65	210
Msa0639350	AT1G21890.1	34.916	358	215	4	17	365	7	355	2.17e-64	210

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Find 106 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAGCTCCGTAGAAT+AGG	0.449858	4_3:+35027253	None:intergenic
AAACCAGCCTTGCTAATGGT+TGG	0.486693	4_3:-35027839	Msa0639350:CDS
AACACTCTCCAAGTCATCTT+CGG	0.457047	4_3:+35027439	None:intergenic
AACCAGCCTTGCTAATGGTT+GGG	0.425888	4_3:-35027838	Msa0639350:CDS
AACTATACTTGGATTTGCTG+GGG	0.597676	4_3:-35026997	Msa0639350:CDS
AAGGAGTAGAATTTGATATT+TGG	0.219912	4_3:-35026953	Msa0639350:CDS
AAGGTTGTAGGAACTATACT+TGG	0.488678	4_3:-35027008	Msa0639350:CDS
AATAAGAGCAAGAGGAATAG+TGG	0.511175	4_3:+35027709	None:intergenic
AATAGTGGTAACCGCTGCAA+AGG	0.587272	4_3:+35027724	None:intergenic
AATGATTCTTGTCATGGCAT+GGG	0.571068	4_3:-35026413	Msa0639350:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAACTAAAAACACAACCA+AGG	-	chr4_3:35026037-35026056	Msa0639350:CDS	30.0%
AATGATTCAATGTTACGTAC+CGG	+	chr4_3:35026118-35026137	None:intergenic	30.0%
TTCAATATTGTGTTGGAGAA+TGG	+	chr4_3:35026237-35026256	None:intergenic	30.0%
TGAAATACTATGTTGGAGAA+TGG	+	chr4_3:35026304-35026323	None:intergenic	30.0%
TAGTTCAAATCTCATTCACA+TGG	-	chr4_3:35026891-35026910	Msa0639350:CDS	30.0%
GGTTATAAAAGAATTGACGA+TGG	+	chr4_3:35026950-35026969	None:intergenic	30.0%
GGTTGGATAGTAAAAGAAAA+TGG	+	chr4_3:35027096-35027115	None:intergenic	30.0%
TAGTGATAGTTAACTATCTG+GGG	+	chr4_3:35027327-35027346	None:intergenic	30.0%
GTTAGTGATAGTTAACTATC+TGG	+	chr4_3:35027329-35027348	None:intergenic	30.0%
GATACTCATTCCATCATATA+TGG	+	chr4_3:35028105-35028124	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	35025919	35029977	35025919	ID=Msa0639350;Name=Msa0639350
chr4_3	mRNA	35025919	35029977	35025919	ID=Msa0639350-mRNA-1;Parent=Msa0639350;Name=Msa0639350-mRNA-1;_AED=0.12;_eAED=0.12;_QI=275\|1\|1\|1\|0.85\|0.75\|8\|23\|365
chr4_3	exon	35025919	35026083	35025919	ID=Msa0639350-mRNA-1:exon:8260;Parent=Msa0639350-mRNA-1
chr4_3	exon	35026304	35026455	35026304	ID=Msa0639350-mRNA-1:exon:8259;Parent=Msa0639350-mRNA-1
chr4_3	exon	35026572	35026730	35026572	ID=Msa0639350-mRNA-1:exon:8258;Parent=Msa0639350-mRNA-1
chr4_3	exon	35026821	35027070	35026821	ID=Msa0639350-mRNA-1:exon:8257;Parent=Msa0639350-mRNA-1
chr4_3	exon	35027177	35027293	35027177	ID=Msa0639350-mRNA-1:exon:8256;Parent=Msa0639350-mRNA-1
chr4_3	exon	35027409	35027468	35027409	ID=Msa0639350-mRNA-1:exon:8255;Parent=Msa0639350-mRNA-1
chr4_3	exon	35027701	35027994	35027701	ID=Msa0639350-mRNA-1:exon:8254;Parent=Msa0639350-mRNA-1
chr4_3	exon	35029779	35029977	35029779	ID=Msa0639350-mRNA-1:exon:8253;Parent=Msa0639350-mRNA-1
chr4_3	five_prime_UTR	35029779	35029977	35029779	ID=Msa0639350-mRNA-1:five_prime_utr;Parent=Msa0639350-mRNA-1
chr4_3	five_prime_UTR	35027919	35027994	35027919	ID=Msa0639350-mRNA-1:five_prime_utr;Parent=Msa0639350-mRNA-1
chr4_3	CDS	35027701	35027918	35027701	ID=Msa0639350-mRNA-1:cds;Parent=Msa0639350-mRNA-1
chr4_3	CDS	35027409	35027468	35027409	ID=Msa0639350-mRNA-1:cds;Parent=Msa0639350-mRNA-1
chr4_3	CDS	35027177	35027293	35027177	ID=Msa0639350-mRNA-1:cds;Parent=Msa0639350-mRNA-1
chr4_3	CDS	35026821	35027070	35026821	ID=Msa0639350-mRNA-1:cds;Parent=Msa0639350-mRNA-1
chr4_3	CDS	35026572	35026730	35026572	ID=Msa0639350-mRNA-1:cds;Parent=Msa0639350-mRNA-1
chr4_3	CDS	35026304	35026455	35026304	ID=Msa0639350-mRNA-1:cds;Parent=Msa0639350-mRNA-1
chr4_3	CDS	35025942	35026083	35025942	ID=Msa0639350-mRNA-1:cds;Parent=Msa0639350-mRNA-1
chr4_3	three_prime_UTR	35025919	35025941	35025919	ID=Msa0639350-mRNA-1:three_prime_utr;Parent=Msa0639350-mRNA-1

Gene Sequence

>Msa0639350

ATGGCTGGGGTCTATTGCAGTCTGATCTTGAAGATGGGAAGCATGTCAAATTCCTTGAAACCAGCCTTGCTAATGGTTGGGGTGCAAATAGTATTTTCTGCTTGCAATATTATCTACAAGCTTGCCATATATGATGGAATGAGTATCATAGTCATTGCAGCCTATCGTCTCGCCTTTGCAGCGGTTACCACTATTCCTCTTGCTCTTATTTTCGAAAGGAAGAGACCGAAGATGACTTGGAGAGTGTTTTACCTTTCACTTCTAAGTGGATTATTTGCTGGACTTTTATTTCAAAACCTATTCTACGGAGCTCTTGTTTTGACATCAGCAACTCTTGTATCAGCTATCTACAACCTTATTCCCTCCGTCACTTTTGTCTTGGCCGTGTCTTTCGGTTTTGAGGAATTAAATTGGCGAGCAGTAACGGGAAAGGCAAAGGTTGTAGGAACTATACTTGGATTTGCTGGGGCATTGGTGTTGACATTTTACAAAGGAGTAGAATTTGATATTTGGCCTTTTGCAATCAATCTTTTGGATCCAAAGAACGACCACACGGAACGTGTCACTGATGCTACCACTGAATTGTTAGGTGTTCTATGTGTCTTACTTAGTTGCTTCTGTTTCTCAATCTGGCTCATCATTCAGGCTAAGATCAGTGAAGTATATCCATGCCCTCAATCAAGCATAGCTTTGATGTCTGTAATAGGAGCAATACAATGTGTTATTTTTGGTTTCATTGTTGAGAGGGATTTGAACCAGTGGAAGCTTGGTTGGGATATCAGGCTCCTCACCGTTGTTTTTTCGGGAGTTTTTGCATCTGGAATAATGATTCTTGTCATGGCATGGGTCGTACAGAAGAAAGGACCTTTATATGCGTCTGCTTTCAATCCTCTAATGCTTTTGATTGTAGCATTCGTCGCATCCATGCTCTTGGATGAGAAGTTAAACCTCGGAAGTATACTAGGAGGAGTGTTGATTGTTTGTGGCTTATATGCGGTGCTATGGGGTAAAGGTAGAGAAACACATAAGAAGATTGAATTAGAGCCCTCAGAAATCATTGGTGATTCCGAAGCTGCAAGGCCATTGTTGAGTCCATGA

Protein sequence

>Msa0639350

MAGVYCSLILKMGSMSNSLKPALLMVGVQIVFSACNIIYKLAIYDGMSIIVIAAYRLAFAAVTTIPLALIFERKRPKMTWRVFYLSLLSGLFAGLLFQNLFYGALVLTSATLVSAIYNLIPSVTFVLAVSFGFEELNWRAVTGKAKVVGTILGFAGALVLTFYKGVEFDIWPFAINLLDPKNDHTERVTDATTELLGVLCVLLSCFCFSIWLIIQAKISEVYPCPQSSIALMSVIGAIQCVIFGFIVERDLNQWKLGWDIRLLTVVFSGVFASGIMILVMAWVVQKKGPLYASAFNPLMLLIVAFVASMLLDEKLNLGSILGGVLIVCGLYAVLWGKGRETHKKIELEPSEIIGDSEAARPLLSP*