Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561150 | RHN62821.1 | 98.117 | 531 | 10 | 0 | 1 | 531 | 32 | 562 | 0.0 | 1087 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561150 | sp|Q93ZA3|BBE13_ARATH | 64.950 | 505 | 170 | 3 | 24 | 525 | 30 | 530 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561150 | A0A396IDB1 | 98.117 | 531 | 10 | 0 | 1 | 531 | 32 | 562 | 0.0 | 1087 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0187030 | Msa0561150 | 0.838981 | 2.081988e-57 | -8.615850e-47 |
| Msa0561150 | Msa0579660 | 0.819821 | 9.496882e-53 | -8.615850e-47 |
| Msa0561150 | Msa0615290 | 0.863722 | 2.032861e-64 | -8.615850e-47 |
| Msa0561150 | Msa0657660 | 0.890932 | 6.296094e-74 | -8.615850e-47 |
| Msa0561150 | Msa0698290 | 0.912862 | 1.197174e-83 | -8.615850e-47 |
| Msa0561150 | Msa0751260 | 0.800289 | 1.545823e-48 | -8.615850e-47 |
| Msa0561150 | Msa0795070 | 0.839754 | 1.311370e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561150 | MtrunA17_Chr4g0051551 | 98.117 | 531 | 10 | 0 | 1 | 531 | 32 | 562 | 0.0 | 1087 |
| Msa0561150 | MtrunA17_Chr2g0292971 | 70.943 | 530 | 153 | 1 | 1 | 529 | 2 | 531 | 0.0 | 776 |
| Msa0561150 | MtrunA17_Chr4g0051541 | 70.276 | 508 | 144 | 2 | 26 | 529 | 28 | 532 | 0.0 | 712 |
| Msa0561150 | MtrunA17_Chr3g0079801 | 51.326 | 528 | 246 | 8 | 5 | 527 | 1 | 522 | 0.0 | 546 |
| Msa0561150 | MtrunA17_Chr4g0051421 | 52.886 | 537 | 236 | 9 | 4 | 525 | 1 | 535 | 0.0 | 541 |
| Msa0561150 | MtrunA17_Chr4g0051421 | 50.943 | 530 | 250 | 6 | 5 | 527 | 549 | 1075 | 0.0 | 540 |
| Msa0561150 | MtrunA17_Chr3g0079791 | 50.947 | 528 | 248 | 8 | 5 | 527 | 1 | 522 | 0.0 | 540 |
| Msa0561150 | MtrunA17_Chr2g0293191 | 49.713 | 523 | 255 | 4 | 12 | 528 | 44 | 564 | 0.0 | 536 |
| Msa0561150 | MtrunA17_Chr2g0293161 | 49.522 | 523 | 256 | 4 | 12 | 528 | 13 | 533 | 0.0 | 536 |
| Msa0561150 | MtrunA17_Chr4g0051381 | 51.769 | 537 | 244 | 7 | 4 | 527 | 1 | 535 | 0.0 | 533 |
| Msa0561150 | MtrunA17_Chr2g0293121 | 48.571 | 525 | 264 | 5 | 7 | 527 | 1 | 523 | 0.0 | 531 |
| Msa0561150 | MtrunA17_Chr3g0079831 | 50.568 | 528 | 252 | 7 | 3 | 527 | 15 | 536 | 0.0 | 529 |
| Msa0561150 | MtrunA17_Chr4g0051411 | 50.568 | 528 | 252 | 6 | 4 | 525 | 9 | 533 | 0.0 | 529 |
| Msa0561150 | MtrunA17_Chr4g0051211 | 53.178 | 472 | 210 | 6 | 65 | 527 | 2 | 471 | 0.0 | 525 |
| Msa0561150 | MtrunA17_Chr2g0292991 | 52.559 | 508 | 235 | 5 | 21 | 527 | 25 | 527 | 0.0 | 523 |
| Msa0561150 | MtrunA17_Chr2g0293021 | 49.522 | 523 | 256 | 6 | 8 | 527 | 10 | 527 | 3.41e-178 | 512 |
| Msa0561150 | MtrunA17_Chr4g0048311 | 51.277 | 509 | 235 | 8 | 27 | 527 | 37 | 540 | 1.14e-173 | 501 |
| Msa0561150 | MtrunA17_Chr4g0051531 | 50.000 | 530 | 255 | 4 | 7 | 528 | 626 | 1153 | 1.68e-173 | 520 |
| Msa0561150 | MtrunA17_Chr4g0051531 | 48.282 | 524 | 257 | 6 | 13 | 528 | 24 | 541 | 1.86e-156 | 476 |
| Msa0561150 | MtrunA17_Chr4g0051441 | 46.126 | 555 | 261 | 5 | 7 | 527 | 64 | 614 | 3.10e-173 | 503 |
| Msa0561150 | MtrunA17_Chr2g0293041 | 49.020 | 510 | 252 | 5 | 24 | 528 | 35 | 541 | 3.46e-170 | 492 |
| Msa0561150 | MtrunA17_Chr4g0048361 | 47.448 | 529 | 266 | 6 | 1 | 525 | 4 | 524 | 2.23e-168 | 487 |
| Msa0561150 | MtrunA17_Chr6g0457031 | 48.084 | 522 | 261 | 6 | 7 | 525 | 10 | 524 | 1.98e-167 | 485 |
| Msa0561150 | MtrunA17_Chr6g0457061 | 48.084 | 522 | 261 | 6 | 7 | 525 | 10 | 524 | 3.60e-167 | 484 |
| Msa0561150 | MtrunA17_Chr2g0293031 | 48.000 | 525 | 260 | 6 | 14 | 528 | 18 | 539 | 4.53e-167 | 484 |
| Msa0561150 | MtrunA17_Chr4g0048351 | 46.981 | 530 | 269 | 7 | 1 | 525 | 17 | 539 | 4.91e-166 | 481 |
| Msa0561150 | MtrunA17_Chr4g0046581 | 48.810 | 504 | 246 | 7 | 29 | 525 | 33 | 531 | 8.92e-164 | 476 |
| Msa0561150 | MtrunA17_Chr4g0028611 | 47.159 | 528 | 268 | 7 | 1 | 525 | 30 | 549 | 1.80e-163 | 475 |
| Msa0561150 | MtrunA17_Chr2g0288611 | 47.312 | 465 | 238 | 5 | 64 | 525 | 4 | 464 | 1.76e-148 | 434 |
| Msa0561150 | MtrunA17_Chr4g0048331 | 45.432 | 405 | 204 | 7 | 123 | 525 | 2 | 391 | 9.26e-127 | 376 |
| Msa0561150 | MtrunA17_Chr1g0188271 | 39.619 | 525 | 301 | 9 | 15 | 530 | 21 | 538 | 1.05e-120 | 365 |
| Msa0561150 | MtrunA17_Chr3g0079821 | 52.193 | 228 | 107 | 2 | 302 | 527 | 1 | 228 | 9.10e-80 | 249 |
| Msa0561150 | MtrunA17_Chr2g0320381 | 53.623 | 69 | 28 | 1 | 168 | 236 | 48 | 112 | 1.17e-20 | 87.8 |
| Msa0561150 | MtrunA17_Chr2g0320371 | 48.889 | 45 | 23 | 0 | 126 | 170 | 1 | 45 | 1.09e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561150 | AT1G30760.2 | 64.950 | 505 | 170 | 3 | 24 | 525 | 48 | 548 | 0.0 | 667 |
| Msa0561150 | AT1G30760.1 | 64.950 | 505 | 170 | 3 | 24 | 525 | 30 | 530 | 0.0 | 665 |
| Msa0561150 | AT2G34790.1 | 61.950 | 523 | 191 | 4 | 6 | 525 | 11 | 528 | 0.0 | 662 |
| Msa0561150 | AT5G44400.1 | 60.640 | 531 | 199 | 7 | 4 | 527 | 9 | 536 | 0.0 | 654 |
| Msa0561150 | AT5G44390.1 | 56.075 | 535 | 224 | 7 | 3 | 529 | 11 | 542 | 0.0 | 603 |
| Msa0561150 | AT5G44380.2 | 57.364 | 516 | 213 | 6 | 18 | 528 | 67 | 580 | 0.0 | 579 |
| Msa0561150 | AT5G44380.1 | 57.364 | 516 | 213 | 6 | 18 | 528 | 27 | 540 | 0.0 | 579 |
| Msa0561150 | AT1G30700.1 | 50.286 | 525 | 255 | 4 | 7 | 528 | 6 | 527 | 2.43e-177 | 510 |
| Msa0561150 | AT5G44360.1 | 48.496 | 532 | 259 | 9 | 5 | 529 | 9 | 532 | 1.03e-169 | 491 |
| Msa0561150 | AT5G44360.2 | 48.496 | 532 | 259 | 9 | 5 | 529 | 25 | 548 | 1.25e-169 | 491 |
| Msa0561150 | AT1G26380.1 | 48.864 | 528 | 258 | 7 | 6 | 527 | 4 | 525 | 4.71e-169 | 489 |
| Msa0561150 | AT4G20860.1 | 49.126 | 515 | 246 | 9 | 22 | 527 | 22 | 529 | 2.18e-168 | 487 |
| Msa0561150 | AT4G20800.1 | 49.203 | 502 | 249 | 4 | 27 | 526 | 27 | 524 | 1.35e-166 | 483 |
| Msa0561150 | AT4G20820.1 | 47.547 | 530 | 261 | 8 | 3 | 527 | 9 | 526 | 7.57e-166 | 481 |
| Msa0561150 | AT1G26420.1 | 47.810 | 525 | 261 | 6 | 14 | 529 | 7 | 527 | 1.79e-164 | 477 |
| Msa0561150 | AT1G26400.1 | 47.637 | 529 | 268 | 6 | 1 | 526 | 1 | 523 | 1.97e-164 | 477 |
| Msa0561150 | AT1G11770.1 | 46.729 | 535 | 269 | 7 | 5 | 528 | 1 | 530 | 6.99e-163 | 473 |
| Msa0561150 | AT1G26390.1 | 49.008 | 504 | 251 | 4 | 29 | 529 | 29 | 529 | 7.36e-163 | 473 |
| Msa0561150 | AT1G26410.1 | 47.714 | 503 | 257 | 5 | 29 | 529 | 53 | 551 | 3.67e-161 | 470 |
| Msa0561150 | AT1G34575.1 | 45.180 | 529 | 264 | 10 | 7 | 525 | 10 | 522 | 2.33e-160 | 467 |
| Msa0561150 | AT1G30730.1 | 45.920 | 527 | 276 | 6 | 4 | 525 | 1 | 523 | 3.68e-159 | 464 |
| Msa0561150 | AT1G30710.1 | 45.247 | 526 | 268 | 9 | 12 | 527 | 13 | 528 | 1.99e-158 | 462 |
| Msa0561150 | AT4G20840.1 | 47.929 | 507 | 255 | 6 | 25 | 527 | 34 | 535 | 2.98e-158 | 462 |
| Msa0561150 | AT5G44440.1 | 45.113 | 532 | 278 | 7 | 1 | 525 | 3 | 527 | 2.42e-156 | 457 |
| Msa0561150 | AT1G30720.1 | 46.589 | 513 | 267 | 5 | 16 | 525 | 16 | 524 | 4.54e-156 | 456 |
| Msa0561150 | AT5G44440.2 | 45.113 | 532 | 278 | 7 | 1 | 525 | 73 | 597 | 4.04e-155 | 456 |
| Msa0561150 | AT5G44410.1 | 47.059 | 544 | 252 | 12 | 1 | 525 | 1 | 527 | 1.83e-151 | 444 |
| Msa0561150 | AT1G30740.1 | 47.036 | 523 | 260 | 8 | 15 | 528 | 15 | 529 | 1.41e-150 | 442 |
| Msa0561150 | AT1G30740.2 | 47.036 | 523 | 260 | 8 | 15 | 528 | 18 | 532 | 1.49e-150 | 442 |
| Msa0561150 | AT1G01980.1 | 47.093 | 516 | 259 | 8 | 22 | 528 | 25 | 535 | 6.22e-150 | 441 |
| Msa0561150 | AT4G20830.2 | 47.255 | 510 | 260 | 6 | 22 | 527 | 32 | 536 | 1.19e-149 | 440 |
| Msa0561150 | AT4G20830.1 | 47.255 | 510 | 260 | 6 | 22 | 527 | 32 | 536 | 4.36e-149 | 439 |
| Msa0561150 | AT2G34810.1 | 44.981 | 518 | 267 | 9 | 22 | 527 | 28 | 539 | 1.65e-143 | 424 |
Find 114 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGGGAGAAGACCTATTT+TGG | 0.145172 | 4_1:-60629234 | Msa0561150:CDS |
| TTGCTAACTCTTGGGGTTAT+AGG | 0.226534 | 4_1:-60628421 | Msa0561150:CDS |
| TACAAAATTCAGTACTTATC+TGG | 0.232561 | 4_1:-60628605 | Msa0561150:CDS |
| AGGGAATTGAGGGAAGTTTC+TGG | 0.233163 | 4_1:+60628743 | None:intergenic |
| GATTGAAGTGTAAGACTTAT+TGG | 0.240801 | 4_1:+60629735 | None:intergenic |
| GCAGGCCTTTGTACATCTTT+AGG | 0.242864 | 4_1:-60629379 | Msa0561150:CDS |
| TATAGATTGAAGAGGGAAAT+TGG | 0.267535 | 4_1:+60629764 | None:intergenic |
| TTTCTTGTTAAACCCAATTC+AGG | 0.270282 | 4_1:+60628911 | None:intergenic |
| TTTCCCTGGAGCAGAACTTC+TGG | 0.282559 | 4_1:+60628821 | None:intergenic |
| TTGATCCATCTAATTTCTTT+AGG | 0.288821 | 4_1:-60628352 | Msa0561150:CDS |
| GTCTTTCTCTTGCTAACTCT+TGG | 0.294277 | 4_1:-60628430 | Msa0561150:CDS |
| AATTATAGAGATTTGGATAT+AGG | 0.299944 | 4_1:-60628476 | Msa0561150:CDS |
| TCTTACCAAGCTCTATTTCT+TGG | 0.303983 | 4_1:-60628974 | Msa0561150:CDS |
| TAGGGATTCCATATCATTAA+AGG | 0.306572 | 4_1:+60628692 | None:intergenic |
| ATGATGGTCCTTTAATGATA+TGG | 0.309466 | 4_1:-60628700 | Msa0561150:CDS |
| GCTAAAATCGTTAATGCTAA+TGG | 0.309493 | 4_1:-60629277 | Msa0561150:CDS |
| CCAGGCAATGGTAGTGTTCC+TGG | 0.320965 | 4_1:-60629016 | Msa0561150:CDS |
| TCTTTCTCTTGCTAACTCTT+GGG | 0.323097 | 4_1:-60628429 | Msa0561150:CDS |
| CTATGTGAATTATAGAGATT+TGG | 0.331419 | 4_1:-60628483 | Msa0561150:CDS |
| TTTAACAAGAAAGGATTGTT+TGG | 0.345762 | 4_1:-60628900 | Msa0561150:CDS |
| ACTTCTGGAGGTGTTGTATT+GGG | 0.356109 | 4_1:+60628836 | None:intergenic |
| GATTGATGGAGAAAAGAATA+TGG | 0.359004 | 4_1:-60628579 | Msa0561150:CDS |
| GTGAATATGAAATCTGGTTT+TGG | 0.363570 | 4_1:+60629667 | None:intergenic |
| GGAGGCGGAGGAGGCAGCTT+CGG | 0.369626 | 4_1:-60629202 | Msa0561150:CDS |
| ATTGAAGAGGGAAATTGGTT+TGG | 0.371420 | 4_1:+60629769 | None:intergenic |
| GAAACAAGCTTCTTTATAGA+TGG | 0.373043 | 4_1:-60629093 | Msa0561150:CDS |
| ATTCAAGTGGGCGCAACTAT+TGG | 0.377296 | 4_1:-60629451 | Msa0561150:CDS |
| TCTCTGGTGGAAGATCAAAT+TGG | 0.387633 | 4_1:-60629173 | Msa0561150:CDS |
| ATTATAGAGATTTGGATATA+GGG | 0.388143 | 4_1:-60628475 | Msa0561150:CDS |
| TGAATTGGGTTTAACAAGAA+AGG | 0.388314 | 4_1:-60628909 | Msa0561150:CDS |
| GAATTTGAGCATGAAGTGAT+AGG | 0.400466 | 4_1:+60629791 | None:intergenic |
| ACACTTTCTTACTTACCAAT+TGG | 0.404020 | 4_1:+60628305 | None:intergenic |
| CTCATTACCGGAGGTGCTTA+CGG | 0.407070 | 4_1:-60629346 | Msa0561150:CDS |
| AGGATTGTTTGGAAACTAGT+TGG | 0.409589 | 4_1:-60628889 | Msa0561150:CDS |
| TACTTATCTGGATGGATTGA+TGG | 0.410447 | 4_1:-60628593 | Msa0561150:CDS |
| GAAAACTCTGCTTCATAACT+TGG | 0.419933 | 4_1:+60628933 | None:intergenic |
| AACTTCTGGAGGTGTTGTAT+TGG | 0.421717 | 4_1:+60628835 | None:intergenic |
| TCAGTTCATGGCTTCCCTGC+AGG | 0.425476 | 4_1:-60629397 | Msa0561150:CDS |
| GGTTCTATGATGAGAAAGTA+TGG | 0.433505 | 4_1:-60629325 | Msa0561150:CDS |
| GGTATCGGTGGCCTCATTAC+CGG | 0.435936 | 4_1:-60629358 | Msa0561150:CDS |
| TACCAAGCTCTATTTCTTGG+TGG | 0.445176 | 4_1:-60628971 | Msa0561150:CDS |
| TACTTACCAATTGGAAGTGG+TGG | 0.452430 | 4_1:+60628314 | None:intergenic |
| CCTACTCATCATTCCTCCAT+AGG | 0.458631 | 4_1:+60628673 | None:intergenic |
| CTTTCTCTTGCTAACTCTTG+GGG | 0.458680 | 4_1:-60628428 | Msa0561150:CDS |
| CTCCTCTTATTGCCCAAAAT+AGG | 0.459368 | 4_1:+60629221 | None:intergenic |
| GCAGCTTCGGAGTTATTCTC+TGG | 0.461190 | 4_1:-60629189 | Msa0561150:CDS |
| GCAATAAGAGGAGGCGGAGG+AGG | 0.463947 | 4_1:-60629211 | Msa0561150:CDS |
| GGAAACTAGTTGGATCAAAT+CGG | 0.466810 | 4_1:-60628879 | Msa0561150:CDS |
| AGGTGTTGTATTGGGATAAC+CGG | 0.468626 | 4_1:+60628844 | None:intergenic |
| CTTTGTACATCTTTAGGTAT+CGG | 0.472738 | 4_1:-60629373 | Msa0561150:CDS |
| TCATGCCTAAAGAAATTAGA+TGG | 0.473346 | 4_1:+60628347 | None:intergenic |
| ACCTCCAGAAGTTCTGCTCC+AGG | 0.474916 | 4_1:-60628825 | Msa0561150:CDS |
| ATATTCCACATAACACGGCT+TGG | 0.479287 | 4_1:-60629474 | Msa0561150:CDS |
| AAAGATGTACAAAGGCCTGC+AGG | 0.483734 | 4_1:+60629382 | None:intergenic |
| TTGAAGTAAGCCTTGGATGT+AGG | 0.484349 | 4_1:+60628797 | None:intergenic |
| TTCTTCAATTGAAACTGAAG+TGG | 0.484924 | 4_1:+60629828 | None:intergenic |
| ATGAAGGCAATAGATACCTT+AGG | 0.486269 | 4_1:+60629692 | None:intergenic |
| CCCTGGAGCAGAACTTCTGG+AGG | 0.490999 | 4_1:+60628824 | None:intergenic |
| CATAGAACCGTAAGCACCTC+CGG | 0.501126 | 4_1:+60629339 | None:intergenic |
| AAACTTCCCTCAATTCCCTA+TGG | 0.503759 | 4_1:-60628739 | Msa0561150:CDS |
| AATGGTGTGAATATGAAATC+TGG | 0.504260 | 4_1:+60629661 | None:intergenic |
| TGAATCCAAGCCGTGTTATG+TGG | 0.508263 | 4_1:+60629469 | None:intergenic |
| AGTATCCCACCACTTCCAAT+TGG | 0.508527 | 4_1:-60628320 | Msa0561150:CDS |
| GAACTACGAAAGTTGCTAAG+AGG | 0.515266 | 4_1:+60629869 | None:intergenic |
| CCAGGAACACTACCATTGCC+TGG | 0.516099 | 4_1:+60629016 | None:intergenic |
| CGTAAGCACCTCCGGTAATG+AGG | 0.522399 | 4_1:+60629347 | None:intergenic |
| CACGTAGTTTAGCCAGGTCT+AGG | 0.524645 | 4_1:+60629509 | None:intergenic |
| CTCCACCAAGAAATAGAGCT+TGG | 0.526513 | 4_1:+60628969 | None:intergenic |
| TTAATGATATGGAATCCCTA+TGG | 0.528439 | 4_1:-60628689 | Msa0561150:CDS |
| ATTCTTGACAGAAAAGCAAT+GGG | 0.529934 | 4_1:-60629250 | Msa0561150:CDS |
| ATATGGCAAAACATATGAGT+TGG | 0.530345 | 4_1:-60628562 | Msa0561150:CDS |
| ATTGAAACTGAAGTGGAAAG+TGG | 0.535886 | 4_1:+60629835 | None:intergenic |
| AAATCGGTTCTTTATATCGC+CGG | 0.536045 | 4_1:-60628863 | Msa0561150:CDS |
| GCTTCGGAGTTATTCTCTGG+TGG | 0.536428 | 4_1:-60629186 | Msa0561150:CDS |
| TTACTGCACGTAGTTTAGCC+AGG | 0.536709 | 4_1:+60629503 | None:intergenic |
| CTACTCATCATTCCTCCATA+GGG | 0.537440 | 4_1:+60628674 | None:intergenic |
| TCTTACTTACCAATTGGAAG+TGG | 0.537824 | 4_1:+60628311 | None:intergenic |
| AAATTCAGTACTTATCTGGA+TGG | 0.539864 | 4_1:-60628601 | Msa0561150:CDS |
| CGTTGATATTCCACATAACA+CGG | 0.539970 | 4_1:-60629479 | Msa0561150:CDS |
| TAACTTCAATAGGTTAGTAA+AGG | 0.543846 | 4_1:-60628387 | Msa0561150:CDS |
| AATTCTTGACAGAAAAGCAA+TGG | 0.545747 | 4_1:-60629251 | Msa0561150:CDS |
| TTGCACATATCACAGCTGCT+TGG | 0.546395 | 4_1:+60629623 | None:intergenic |
| ATGATGAGAAAGTATGGCCT+CGG | 0.549358 | 4_1:-60629319 | Msa0561150:CDS |
| CTGCTTGGACTTGTGAGTCA+TGG | 0.555171 | 4_1:+60629638 | None:intergenic |
| AGTGTAAGACTTATTGGTTG+AGG | 0.555975 | 4_1:+60629741 | None:intergenic |
| AGCGGAGGACACGACTATGA+AGG | 0.557599 | 4_1:-60629571 | Msa0561150:CDS |
| GTTGAGGTATAGATTGAAGA+GGG | 0.560414 | 4_1:+60629757 | None:intergenic |
| AATCCACTGCTCAAAACCTA+AGG | 0.560820 | 4_1:-60629708 | Msa0561150:CDS |
| ACCGTTCATGATCCTAGACC+TGG | 0.569999 | 4_1:-60629521 | Msa0561150:CDS |
| TGGGCAATAAGAGGAGGCGG+AGG | 0.574351 | 4_1:-60629214 | Msa0561150:CDS |
| AACTACGAAAGTTGCTAAGA+GGG | 0.580812 | 4_1:+60629870 | None:intergenic |
| TGTACATCTTTAGGTATCGG+TGG | 0.582234 | 4_1:-60629370 | Msa0561150:CDS |
| ACTTACCAATTGGAAGTGGT+GGG | 0.584064 | 4_1:+60628315 | None:intergenic |
| CCTATGGAGGAATGATGAGT+AGG | 0.584439 | 4_1:-60628673 | Msa0561150:CDS |
| CAAAACATATGAGTTGGATG+AGG | 0.585356 | 4_1:-60628556 | Msa0561150:CDS |
| GCCAGGTCTAGGATCATGAA+CGG | 0.594071 | 4_1:+60629520 | None:intergenic |
| GTAGTTACAGTTCTTTGACC+AGG | 0.595410 | 4_1:+60628998 | None:intergenic |
| TGGACTTGTGAGTCATGGAA+TGG | 0.604528 | 4_1:+60629643 | None:intergenic |
| AAGATGTACAAAGGCCTGCA+GGG | 0.604713 | 4_1:+60629383 | None:intergenic |
| CCAGGGAAAACCTACATCCA+AGG | 0.606686 | 4_1:-60628807 | Msa0561150:CDS |
| GTCATGATTCAACCAGGCAA+TGG | 0.606988 | 4_1:-60629028 | Msa0561150:CDS |
| CCTCCAGAAGTTCTGCTCCA+GGG | 0.608247 | 4_1:-60628824 | Msa0561150:CDS |
| GGTTGAGGTATAGATTGAAG+AGG | 0.611987 | 4_1:+60629756 | None:intergenic |
| ATCGGTGGCCTCATTACCGG+AGG | 0.636534 | 4_1:-60629355 | Msa0561150:CDS |
| ATCAGAGTCATGATTCAACC+AGG | 0.644860 | 4_1:-60629034 | Msa0561150:CDS |
| AACACGGCTTGGATTCAAGT+GGG | 0.646968 | 4_1:-60629463 | Msa0561150:CDS |
| ATGATATGGAATCCCTATGG+AGG | 0.647237 | 4_1:-60628686 | Msa0561150:CDS |
| TAACACGGCTTGGATTCAAG+TGG | 0.652527 | 4_1:-60629464 | Msa0561150:CDS |
| CATATGAGAATACGAAGCGG+AGG | 0.688013 | 4_1:-60629586 | Msa0561150:CDS |
| CGATACCTAAAGATGTACAA+AGG | 0.714905 | 4_1:+60629374 | None:intergenic |
| ACAAGGAGTCTAGAACAAGG+TGG | 0.732716 | 4_1:-60629115 | Msa0561150:CDS |
| GTAACAAGGAGTCTAGAACA+AGG | 0.738100 | 4_1:-60629118 | Msa0561150:CDS |
| ATTCATATGAGAATACGAAG+CGG | 0.748676 | 4_1:-60629589 | Msa0561150:CDS |
| CAACAACGTTGTCAACACCG+AGG | 0.799916 | 4_1:+60629302 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAGATTTTCATCAATATT+TGG | + | chr4_1:60629144-60629163 | None:intergenic | 20.0% |
| !!! | TTGAAGAAAAATTTTCCATA+GGG | + | chr4_1:60629478-60629497 | None:intergenic | 20.0% |
| !!! | AAAATTTTTCTTCAAGATGA+TGG | - | chr4_1:60629483-60629502 | Msa0561150:CDS | 20.0% |
| !! | AATTATAGAGATTTGGATAT+AGG | - | chr4_1:60629723-60629742 | Msa0561150:CDS | 20.0% |
| !! | ATTATAGAGATTTGGATATA+GGG | - | chr4_1:60629724-60629743 | Msa0561150:CDS | 20.0% |
| !!! | AAGAGATTTTCATCAATATT+TGG | + | chr4_1:60629144-60629163 | None:intergenic | 20.0% |
| !!! | TTGAAGAAAAATTTTCCATA+GGG | + | chr4_1:60629478-60629497 | None:intergenic | 20.0% |
| !!! | AAAATTTTTCTTCAAGATGA+TGG | - | chr4_1:60629483-60629502 | Msa0561150:CDS | 20.0% |
| !! | AATTATAGAGATTTGGATAT+AGG | - | chr4_1:60629723-60629742 | Msa0561150:CDS | 20.0% |
| !! | ATTATAGAGATTTGGATATA+GGG | - | chr4_1:60629724-60629743 | Msa0561150:CDS | 20.0% |
| ! | TTTAACAAGAAAGGATTGTT+TGG | - | chr4_1:60629299-60629318 | Msa0561150:CDS | 25.0% |
| !! | CTTGAAGAAAAATTTTCCAT+AGG | + | chr4_1:60629479-60629498 | None:intergenic | 25.0% |
| ! | TACAAAATTCAGTACTTATC+TGG | - | chr4_1:60629594-60629613 | Msa0561150:CDS | 25.0% |
| ! | TTATGCATCAAAAAATCCAA+GGG | - | chr4_1:60629689-60629708 | Msa0561150:CDS | 25.0% |
| ! | CTATGTGAATTATAGAGATT+TGG | - | chr4_1:60629716-60629735 | Msa0561150:CDS | 25.0% |
| !!! | ATTTTAAGGGTAACTTCAAT+AGG | - | chr4_1:60629802-60629821 | Msa0561150:CDS | 25.0% |
| ! | TAACTTCAATAGGTTAGTAA+AGG | - | chr4_1:60629812-60629831 | Msa0561150:CDS | 25.0% |
| ! | TTGATCCATCTAATTTCTTT+AGG | - | chr4_1:60629847-60629866 | Msa0561150:CDS | 25.0% |
| ! | TTTAACAAGAAAGGATTGTT+TGG | - | chr4_1:60629299-60629318 | Msa0561150:CDS | 25.0% |
| !! | CTTGAAGAAAAATTTTCCAT+AGG | + | chr4_1:60629479-60629498 | None:intergenic | 25.0% |
| ! | TACAAAATTCAGTACTTATC+TGG | - | chr4_1:60629594-60629613 | Msa0561150:CDS | 25.0% |
| ! | TTATGCATCAAAAAATCCAA+GGG | - | chr4_1:60629689-60629708 | Msa0561150:CDS | 25.0% |
| ! | CTATGTGAATTATAGAGATT+TGG | - | chr4_1:60629716-60629735 | Msa0561150:CDS | 25.0% |
| !!! | ATTTTAAGGGTAACTTCAAT+AGG | - | chr4_1:60629802-60629821 | Msa0561150:CDS | 25.0% |
| ! | TAACTTCAATAGGTTAGTAA+AGG | - | chr4_1:60629812-60629831 | Msa0561150:CDS | 25.0% |
| ! | TTGATCCATCTAATTTCTTT+AGG | - | chr4_1:60629847-60629866 | Msa0561150:CDS | 25.0% |
| TTCTTCAATTGAAACTGAAG+TGG | + | chr4_1:60628374-60628393 | None:intergenic | 30.0% | |
| TATAGATTGAAGAGGGAAAT+TGG | + | chr4_1:60628438-60628457 | None:intergenic | 30.0% | |
| GATTGAAGTGTAAGACTTAT+TGG | + | chr4_1:60628467-60628486 | None:intergenic | 30.0% | |
| !! | GTGAATATGAAATCTGGTTT+TGG | + | chr4_1:60628535-60628554 | None:intergenic | 30.0% |
| AATGGTGTGAATATGAAATC+TGG | + | chr4_1:60628541-60628560 | None:intergenic | 30.0% | |
| GTGATATGTGCAAAAAAACA+TGG | - | chr4_1:60628586-60628605 | Msa0561150:CDS | 30.0% | |
| ATTCATATGAGAATACGAAG+CGG | - | chr4_1:60628610-60628629 | Msa0561150:CDS | 30.0% | |
| CTTTGTACATCTTTAGGTAT+CGG | - | chr4_1:60628826-60628845 | Msa0561150:CDS | 30.0% | |
| GCTAAAATCGTTAATGCTAA+TGG | - | chr4_1:60628922-60628941 | Msa0561150:CDS | 30.0% | |
| AATTCTTGACAGAAAAGCAA+TGG | - | chr4_1:60628948-60628967 | Msa0561150:CDS | 30.0% | |
| ATTCTTGACAGAAAAGCAAT+GGG | - | chr4_1:60628949-60628968 | Msa0561150:CDS | 30.0% | |
| ! | AAAAACTGTGACAGTTTTCA+CGG | - | chr4_1:60629059-60629078 | Msa0561150:CDS | 30.0% |
| GAAACAAGCTTCTTTATAGA+TGG | - | chr4_1:60629106-60629125 | Msa0561150:CDS | 30.0% | |
| TTTCTTGTTAAACCCAATTC+AGG | + | chr4_1:60629291-60629310 | None:intergenic | 30.0% | |
| TGAATTGGGTTTAACAAGAA+AGG | - | chr4_1:60629290-60629309 | Msa0561150:CDS | 30.0% | |
| ! | AATTTTCCATAGGGAATTGA+GGG | + | chr4_1:60629469-60629488 | None:intergenic | 30.0% |
| ! | AAATTTTCCATAGGGAATTG+AGG | + | chr4_1:60629470-60629489 | None:intergenic | 30.0% |
| ATGATGGTCCTTTAATGATA+TGG | - | chr4_1:60629499-60629518 | Msa0561150:CDS | 30.0% | |
| TAGGGATTCCATATCATTAA+AGG | + | chr4_1:60629510-60629529 | None:intergenic | 30.0% | |
| TTAATGATATGGAATCCCTA+TGG | - | chr4_1:60629510-60629529 | Msa0561150:CDS | 30.0% | |
| AAATTCAGTACTTATCTGGA+TGG | - | chr4_1:60629598-60629617 | Msa0561150:CDS | 30.0% | |
| GATTGATGGAGAAAAGAATA+TGG | - | chr4_1:60629620-60629639 | Msa0561150:CDS | 30.0% | |
| ATATGGCAAAACATATGAGT+TGG | - | chr4_1:60629637-60629656 | Msa0561150:CDS | 30.0% | |
| !!! | CTTGGATTTTTTGATGCATA+AGG | + | chr4_1:60629690-60629709 | None:intergenic | 30.0% |
| CTTATGCATCAAAAAATCCA+AGG | - | chr4_1:60629688-60629707 | Msa0561150:CDS | 30.0% | |
| ! | TAATTCACATAGTTTTCCCT+TGG | + | chr4_1:60629708-60629727 | None:intergenic | 30.0% |
| ! | TTGGGGTTATAGGTATTTTA+AGG | - | chr4_1:60629788-60629807 | Msa0561150:CDS | 30.0% |
| !! | TGGGGTTATAGGTATTTTAA+GGG | - | chr4_1:60629789-60629808 | Msa0561150:CDS | 30.0% |
| TCATGCCTAAAGAAATTAGA+TGG | + | chr4_1:60629855-60629874 | None:intergenic | 30.0% | |
| TTCTTCAATTGAAACTGAAG+TGG | + | chr4_1:60628374-60628393 | None:intergenic | 30.0% | |
| TATAGATTGAAGAGGGAAAT+TGG | + | chr4_1:60628438-60628457 | None:intergenic | 30.0% | |
| GATTGAAGTGTAAGACTTAT+TGG | + | chr4_1:60628467-60628486 | None:intergenic | 30.0% | |
| !! | GTGAATATGAAATCTGGTTT+TGG | + | chr4_1:60628535-60628554 | None:intergenic | 30.0% |
| AATGGTGTGAATATGAAATC+TGG | + | chr4_1:60628541-60628560 | None:intergenic | 30.0% | |
| GTGATATGTGCAAAAAAACA+TGG | - | chr4_1:60628586-60628605 | Msa0561150:CDS | 30.0% | |
| ATTCATATGAGAATACGAAG+CGG | - | chr4_1:60628610-60628629 | Msa0561150:CDS | 30.0% | |
| CTTTGTACATCTTTAGGTAT+CGG | - | chr4_1:60628826-60628845 | Msa0561150:CDS | 30.0% | |
| GCTAAAATCGTTAATGCTAA+TGG | - | chr4_1:60628922-60628941 | Msa0561150:CDS | 30.0% | |
| AATTCTTGACAGAAAAGCAA+TGG | - | chr4_1:60628948-60628967 | Msa0561150:CDS | 30.0% | |
| ATTCTTGACAGAAAAGCAAT+GGG | - | chr4_1:60628949-60628968 | Msa0561150:CDS | 30.0% | |
| ! | AAAAACTGTGACAGTTTTCA+CGG | - | chr4_1:60629059-60629078 | Msa0561150:CDS | 30.0% |
| GAAACAAGCTTCTTTATAGA+TGG | - | chr4_1:60629106-60629125 | Msa0561150:CDS | 30.0% | |
| TTTCTTGTTAAACCCAATTC+AGG | + | chr4_1:60629291-60629310 | None:intergenic | 30.0% | |
| TGAATTGGGTTTAACAAGAA+AGG | - | chr4_1:60629290-60629309 | Msa0561150:CDS | 30.0% | |
| ! | AATTTTCCATAGGGAATTGA+GGG | + | chr4_1:60629469-60629488 | None:intergenic | 30.0% |
| ! | AAATTTTCCATAGGGAATTG+AGG | + | chr4_1:60629470-60629489 | None:intergenic | 30.0% |
| ATGATGGTCCTTTAATGATA+TGG | - | chr4_1:60629499-60629518 | Msa0561150:CDS | 30.0% | |
| TAGGGATTCCATATCATTAA+AGG | + | chr4_1:60629510-60629529 | None:intergenic | 30.0% | |
| TTAATGATATGGAATCCCTA+TGG | - | chr4_1:60629510-60629529 | Msa0561150:CDS | 30.0% | |
| AAATTCAGTACTTATCTGGA+TGG | - | chr4_1:60629598-60629617 | Msa0561150:CDS | 30.0% | |
| GATTGATGGAGAAAAGAATA+TGG | - | chr4_1:60629620-60629639 | Msa0561150:CDS | 30.0% | |
| ATATGGCAAAACATATGAGT+TGG | - | chr4_1:60629637-60629656 | Msa0561150:CDS | 30.0% | |
| !!! | CTTGGATTTTTTGATGCATA+AGG | + | chr4_1:60629690-60629709 | None:intergenic | 30.0% |
| CTTATGCATCAAAAAATCCA+AGG | - | chr4_1:60629688-60629707 | Msa0561150:CDS | 30.0% | |
| ! | TAATTCACATAGTTTTCCCT+TGG | + | chr4_1:60629708-60629727 | None:intergenic | 30.0% |
| ! | TTGGGGTTATAGGTATTTTA+AGG | - | chr4_1:60629788-60629807 | Msa0561150:CDS | 30.0% |
| !! | TGGGGTTATAGGTATTTTAA+GGG | - | chr4_1:60629789-60629808 | Msa0561150:CDS | 30.0% |
| TCATGCCTAAAGAAATTAGA+TGG | + | chr4_1:60629855-60629874 | None:intergenic | 30.0% | |
| AACTACGAAAGTTGCTAAGA+GGG | + | chr4_1:60628332-60628351 | None:intergenic | 35.0% | |
| ATTGAAACTGAAGTGGAAAG+TGG | + | chr4_1:60628367-60628386 | None:intergenic | 35.0% | |
| GAATTTGAGCATGAAGTGAT+AGG | + | chr4_1:60628411-60628430 | None:intergenic | 35.0% | |
| ATTGAAGAGGGAAATTGGTT+TGG | + | chr4_1:60628433-60628452 | None:intergenic | 35.0% | |
| GTTGAGGTATAGATTGAAGA+GGG | + | chr4_1:60628445-60628464 | None:intergenic | 35.0% | |
| ! | AGTGTAAGACTTATTGGTTG+AGG | + | chr4_1:60628461-60628480 | None:intergenic | 35.0% |
| ATGAAGGCAATAGATACCTT+AGG | + | chr4_1:60628510-60628529 | None:intergenic | 35.0% | |
| !!! | AAATCTGGTTTTGGCAATGA+AGG | + | chr4_1:60628526-60628545 | None:intergenic | 35.0% |
| CGTTGATATTCCACATAACA+CGG | - | chr4_1:60628720-60628739 | Msa0561150:CDS | 35.0% | |
| CGATACCTAAAGATGTACAA+AGG | + | chr4_1:60628828-60628847 | None:intergenic | 35.0% | |
| GGTTCTATGATGAGAAAGTA+TGG | - | chr4_1:60628874-60628893 | Msa0561150:CDS | 35.0% | |
| ! | AATGGGAGAAGACCTATTTT+GGG | - | chr4_1:60628966-60628985 | Msa0561150:CDS | 35.0% |
| ! | GTGAAAACTGTCACAGTTTT+TGG | + | chr4_1:60629060-60629079 | None:intergenic | 35.0% |
| ! | TCTTACCAAGCTCTATTTCT+TGG | - | chr4_1:60629225-60629244 | Msa0561150:CDS | 35.0% |
| GAAAACTCTGCTTCATAACT+TGG | + | chr4_1:60629269-60629288 | None:intergenic | 35.0% | |
| ! | AAGCAGAGTTTTCCTGAATT+GGG | - | chr4_1:60629276-60629295 | Msa0561150:CDS | 35.0% |
| AGGATTGTTTGGAAACTAGT+TGG | - | chr4_1:60629310-60629329 | Msa0561150:CDS | 35.0% | |
| GGAAACTAGTTGGATCAAAT+CGG | - | chr4_1:60629320-60629339 | Msa0561150:CDS | 35.0% | |
| ! | AAATCGGTTCTTTATATCGC+CGG | - | chr4_1:60629336-60629355 | Msa0561150:CDS | 35.0% |
| !!! | TTTTGCTTTGAAGTAAGCCT+TGG | + | chr4_1:60629412-60629431 | None:intergenic | 35.0% |
| ! | TAAAGAGTTCCTTTTCTGTG+AGG | + | chr4_1:60629576-60629595 | None:intergenic | 35.0% |
| !! | TACTTATCTGGATGGATTGA+TGG | - | chr4_1:60629606-60629625 | Msa0561150:CDS | 35.0% |
| ! | CAAAACATATGAGTTGGATG+AGG | - | chr4_1:60629643-60629662 | Msa0561150:CDS | 35.0% |
| TCTTTCTCTTGCTAACTCTT+GGG | - | chr4_1:60629770-60629789 | Msa0561150:CDS | 35.0% | |
| AACTACGAAAGTTGCTAAGA+GGG | + | chr4_1:60628332-60628351 | None:intergenic | 35.0% | |
| ATTGAAACTGAAGTGGAAAG+TGG | + | chr4_1:60628367-60628386 | None:intergenic | 35.0% | |
| GAATTTGAGCATGAAGTGAT+AGG | + | chr4_1:60628411-60628430 | None:intergenic | 35.0% | |
| ATTGAAGAGGGAAATTGGTT+TGG | + | chr4_1:60628433-60628452 | None:intergenic | 35.0% | |
| GTTGAGGTATAGATTGAAGA+GGG | + | chr4_1:60628445-60628464 | None:intergenic | 35.0% | |
| ! | AGTGTAAGACTTATTGGTTG+AGG | + | chr4_1:60628461-60628480 | None:intergenic | 35.0% |
| ATGAAGGCAATAGATACCTT+AGG | + | chr4_1:60628510-60628529 | None:intergenic | 35.0% | |
| !!! | AAATCTGGTTTTGGCAATGA+AGG | + | chr4_1:60628526-60628545 | None:intergenic | 35.0% |
| CGTTGATATTCCACATAACA+CGG | - | chr4_1:60628720-60628739 | Msa0561150:CDS | 35.0% | |
| CGATACCTAAAGATGTACAA+AGG | + | chr4_1:60628828-60628847 | None:intergenic | 35.0% | |
| GGTTCTATGATGAGAAAGTA+TGG | - | chr4_1:60628874-60628893 | Msa0561150:CDS | 35.0% | |
| ! | AATGGGAGAAGACCTATTTT+GGG | - | chr4_1:60628966-60628985 | Msa0561150:CDS | 35.0% |
| ! | GTGAAAACTGTCACAGTTTT+TGG | + | chr4_1:60629060-60629079 | None:intergenic | 35.0% |
| ! | TCTTACCAAGCTCTATTTCT+TGG | - | chr4_1:60629225-60629244 | Msa0561150:CDS | 35.0% |
| GAAAACTCTGCTTCATAACT+TGG | + | chr4_1:60629269-60629288 | None:intergenic | 35.0% | |
| ! | AAGCAGAGTTTTCCTGAATT+GGG | - | chr4_1:60629276-60629295 | Msa0561150:CDS | 35.0% |
| AGGATTGTTTGGAAACTAGT+TGG | - | chr4_1:60629310-60629329 | Msa0561150:CDS | 35.0% | |
| GGAAACTAGTTGGATCAAAT+CGG | - | chr4_1:60629320-60629339 | Msa0561150:CDS | 35.0% | |
| ! | AAATCGGTTCTTTATATCGC+CGG | - | chr4_1:60629336-60629355 | Msa0561150:CDS | 35.0% |
| !!! | TTTTGCTTTGAAGTAAGCCT+TGG | + | chr4_1:60629412-60629431 | None:intergenic | 35.0% |
| ! | TAAAGAGTTCCTTTTCTGTG+AGG | + | chr4_1:60629576-60629595 | None:intergenic | 35.0% |
| !! | TACTTATCTGGATGGATTGA+TGG | - | chr4_1:60629606-60629625 | Msa0561150:CDS | 35.0% |
| ! | CAAAACATATGAGTTGGATG+AGG | - | chr4_1:60629643-60629662 | Msa0561150:CDS | 35.0% |
| TCTTTCTCTTGCTAACTCTT+GGG | - | chr4_1:60629770-60629789 | Msa0561150:CDS | 35.0% | |
| GAACTACGAAAGTTGCTAAG+AGG | + | chr4_1:60628333-60628352 | None:intergenic | 40.0% | |
| GGTTGAGGTATAGATTGAAG+AGG | + | chr4_1:60628446-60628465 | None:intergenic | 40.0% | |
| AATCCACTGCTCAAAACCTA+AGG | - | chr4_1:60628491-60628510 | Msa0561150:CDS | 40.0% | |
| !!! | ATACCTTAGGTTTTGAGCAG+TGG | + | chr4_1:60628497-60628516 | None:intergenic | 40.0% |
| ATATTCCACATAACACGGCT+TGG | - | chr4_1:60628725-60628744 | Msa0561150:CDS | 40.0% | |
| TCCGCAAAAAGTTCAGTTCA+TGG | - | chr4_1:60628790-60628809 | Msa0561150:CDS | 40.0% | |
| ! | GCCATGAACTGAACTTTTTG+CGG | + | chr4_1:60628794-60628813 | None:intergenic | 40.0% |
| !! | TGTACATCTTTAGGTATCGG+TGG | - | chr4_1:60628829-60628848 | Msa0561150:CDS | 40.0% |
| ! | ATGATGAGAAAGTATGGCCT+CGG | - | chr4_1:60628880-60628899 | Msa0561150:CDS | 40.0% |
| ! | CAATGGGAGAAGACCTATTT+TGG | - | chr4_1:60628965-60628984 | Msa0561150:CDS | 40.0% |
| !! | GACCTATTTTGGGCAATAAG+AGG | - | chr4_1:60628976-60628995 | Msa0561150:CDS | 40.0% |
| CTCCTCTTATTGCCCAAAAT+AGG | + | chr4_1:60628981-60629000 | None:intergenic | 40.0% | |
| !! | CTATTTTGGGCAATAAGAGG+AGG | - | chr4_1:60628979-60628998 | Msa0561150:CDS | 40.0% |
| TCTCTGGTGGAAGATCAAAT+TGG | - | chr4_1:60629026-60629045 | Msa0561150:CDS | 40.0% | |
| ! | TGACAGTTTTCACGGTAACA+AGG | - | chr4_1:60629067-60629086 | Msa0561150:CDS | 40.0% |
| ! | GTAACAAGGAGTCTAGAACA+AGG | - | chr4_1:60629081-60629100 | Msa0561150:CDS | 40.0% |
| ATCAGAGTCATGATTCAACC+AGG | - | chr4_1:60629165-60629184 | Msa0561150:CDS | 40.0% | |
| GTAGTTACAGTTCTTTGACC+AGG | + | chr4_1:60629204-60629223 | None:intergenic | 40.0% | |
| ! | TACCAAGCTCTATTTCTTGG+TGG | - | chr4_1:60629228-60629247 | Msa0561150:CDS | 40.0% |
| ! | GAAGCAGAGTTTTCCTGAAT+TGG | - | chr4_1:60629275-60629294 | Msa0561150:CDS | 40.0% |
| ! | AGGTGTTGTATTGGGATAAC+CGG | + | chr4_1:60629358-60629377 | None:intergenic | 40.0% |
| !! | ACTTCTGGAGGTGTTGTATT+GGG | + | chr4_1:60629366-60629385 | None:intergenic | 40.0% |
| !! | AACTTCTGGAGGTGTTGTAT+TGG | + | chr4_1:60629367-60629386 | None:intergenic | 40.0% |
| TTGAAGTAAGCCTTGGATGT+AGG | + | chr4_1:60629405-60629424 | None:intergenic | 40.0% | |
| AAACTTCCCTCAATTCCCTA+TGG | - | chr4_1:60629460-60629479 | Msa0561150:CDS | 40.0% | |
| ATGATATGGAATCCCTATGG+AGG | - | chr4_1:60629513-60629532 | Msa0561150:CDS | 40.0% | |
| CTACTCATCATTCCTCCATA+GGG | + | chr4_1:60629528-60629547 | None:intergenic | 40.0% | |
| ! | ACACCTTTTCCTCACAGAAA+AGG | - | chr4_1:60629564-60629583 | Msa0561150:CDS | 40.0% |
| ! | GTTCCTTTTCTGTGAGGAAA+AGG | + | chr4_1:60629570-60629589 | None:intergenic | 40.0% |
| GTCTTTCTCTTGCTAACTCT+TGG | - | chr4_1:60629769-60629788 | Msa0561150:CDS | 40.0% | |
| CTTTCTCTTGCTAACTCTTG+GGG | - | chr4_1:60629771-60629790 | Msa0561150:CDS | 40.0% | |
| TTGCTAACTCTTGGGGTTAT+AGG | - | chr4_1:60629778-60629797 | Msa0561150:CDS | 40.0% | |
| ACTTACCAATTGGAAGTGGT+GGG | + | chr4_1:60629887-60629906 | None:intergenic | 40.0% | |
| TACTTACCAATTGGAAGTGG+TGG | + | chr4_1:60629888-60629907 | None:intergenic | 40.0% | |
| GAACTACGAAAGTTGCTAAG+AGG | + | chr4_1:60628333-60628352 | None:intergenic | 40.0% | |
| GGTTGAGGTATAGATTGAAG+AGG | + | chr4_1:60628446-60628465 | None:intergenic | 40.0% | |
| AATCCACTGCTCAAAACCTA+AGG | - | chr4_1:60628491-60628510 | Msa0561150:CDS | 40.0% | |
| !!! | ATACCTTAGGTTTTGAGCAG+TGG | + | chr4_1:60628497-60628516 | None:intergenic | 40.0% |
| ATATTCCACATAACACGGCT+TGG | - | chr4_1:60628725-60628744 | Msa0561150:CDS | 40.0% | |
| TCCGCAAAAAGTTCAGTTCA+TGG | - | chr4_1:60628790-60628809 | Msa0561150:CDS | 40.0% | |
| ! | GCCATGAACTGAACTTTTTG+CGG | + | chr4_1:60628794-60628813 | None:intergenic | 40.0% |
| !! | TGTACATCTTTAGGTATCGG+TGG | - | chr4_1:60628829-60628848 | Msa0561150:CDS | 40.0% |
| ! | ATGATGAGAAAGTATGGCCT+CGG | - | chr4_1:60628880-60628899 | Msa0561150:CDS | 40.0% |
| ! | CAATGGGAGAAGACCTATTT+TGG | - | chr4_1:60628965-60628984 | Msa0561150:CDS | 40.0% |
| !! | GACCTATTTTGGGCAATAAG+AGG | - | chr4_1:60628976-60628995 | Msa0561150:CDS | 40.0% |
| CTCCTCTTATTGCCCAAAAT+AGG | + | chr4_1:60628981-60629000 | None:intergenic | 40.0% | |
| !! | CTATTTTGGGCAATAAGAGG+AGG | - | chr4_1:60628979-60628998 | Msa0561150:CDS | 40.0% |
| TCTCTGGTGGAAGATCAAAT+TGG | - | chr4_1:60629026-60629045 | Msa0561150:CDS | 40.0% | |
| ! | TGACAGTTTTCACGGTAACA+AGG | - | chr4_1:60629067-60629086 | Msa0561150:CDS | 40.0% |
| ! | GTAACAAGGAGTCTAGAACA+AGG | - | chr4_1:60629081-60629100 | Msa0561150:CDS | 40.0% |
| ATCAGAGTCATGATTCAACC+AGG | - | chr4_1:60629165-60629184 | Msa0561150:CDS | 40.0% | |
| GTAGTTACAGTTCTTTGACC+AGG | + | chr4_1:60629204-60629223 | None:intergenic | 40.0% | |
| ! | TACCAAGCTCTATTTCTTGG+TGG | - | chr4_1:60629228-60629247 | Msa0561150:CDS | 40.0% |
| ! | GAAGCAGAGTTTTCCTGAAT+TGG | - | chr4_1:60629275-60629294 | Msa0561150:CDS | 40.0% |
| ! | AGGTGTTGTATTGGGATAAC+CGG | + | chr4_1:60629358-60629377 | None:intergenic | 40.0% |
| !! | ACTTCTGGAGGTGTTGTATT+GGG | + | chr4_1:60629366-60629385 | None:intergenic | 40.0% |
| !! | AACTTCTGGAGGTGTTGTAT+TGG | + | chr4_1:60629367-60629386 | None:intergenic | 40.0% |
| TTGAAGTAAGCCTTGGATGT+AGG | + | chr4_1:60629405-60629424 | None:intergenic | 40.0% | |
| AAACTTCCCTCAATTCCCTA+TGG | - | chr4_1:60629460-60629479 | Msa0561150:CDS | 40.0% | |
| ATGATATGGAATCCCTATGG+AGG | - | chr4_1:60629513-60629532 | Msa0561150:CDS | 40.0% | |
| CTACTCATCATTCCTCCATA+GGG | + | chr4_1:60629528-60629547 | None:intergenic | 40.0% | |
| ! | ACACCTTTTCCTCACAGAAA+AGG | - | chr4_1:60629564-60629583 | Msa0561150:CDS | 40.0% |
| ! | GTTCCTTTTCTGTGAGGAAA+AGG | + | chr4_1:60629570-60629589 | None:intergenic | 40.0% |
| GTCTTTCTCTTGCTAACTCT+TGG | - | chr4_1:60629769-60629788 | Msa0561150:CDS | 40.0% | |
| CTTTCTCTTGCTAACTCTTG+GGG | - | chr4_1:60629771-60629790 | Msa0561150:CDS | 40.0% | |
| TTGCTAACTCTTGGGGTTAT+AGG | - | chr4_1:60629778-60629797 | Msa0561150:CDS | 40.0% | |
| ACTTACCAATTGGAAGTGGT+GGG | + | chr4_1:60629887-60629906 | None:intergenic | 40.0% | |
| TACTTACCAATTGGAAGTGG+TGG | + | chr4_1:60629888-60629907 | None:intergenic | 40.0% | |
| !!! | GGTTTTGAGCAGTGGATTCA+AGG | + | chr4_1:60628489-60628508 | None:intergenic | 45.0% |
| TGGACTTGTGAGTCATGGAA+TGG | + | chr4_1:60628559-60628578 | None:intergenic | 45.0% | |
| TTGCACATATCACAGCTGCT+TGG | + | chr4_1:60628579-60628598 | None:intergenic | 45.0% | |
| CATATGAGAATACGAAGCGG+AGG | - | chr4_1:60628613-60628632 | Msa0561150:CDS | 45.0% | |
| TTACTGCACGTAGTTTAGCC+AGG | + | chr4_1:60628699-60628718 | None:intergenic | 45.0% | |
| TGAATCCAAGCCGTGTTATG+TGG | + | chr4_1:60628733-60628752 | None:intergenic | 45.0% | |
| ! | TAACACGGCTTGGATTCAAG+TGG | - | chr4_1:60628735-60628754 | Msa0561150:CDS | 45.0% |
| ! | AACACGGCTTGGATTCAAGT+GGG | - | chr4_1:60628736-60628755 | Msa0561150:CDS | 45.0% |
| ATTCAAGTGGGCGCAACTAT+TGG | - | chr4_1:60628748-60628767 | Msa0561150:CDS | 45.0% | |
| AAGATGTACAAAGGCCTGCA+GGG | + | chr4_1:60628819-60628838 | None:intergenic | 45.0% | |
| AAAGATGTACAAAGGCCTGC+AGG | + | chr4_1:60628820-60628839 | None:intergenic | 45.0% | |
| GCAGGCCTTTGTACATCTTT+AGG | - | chr4_1:60628820-60628839 | Msa0561150:CDS | 45.0% | |
| ! | TTTTGGGCAATAAGAGGAGG+CGG | - | chr4_1:60628982-60629001 | Msa0561150:CDS | 45.0% |
| !!! | ACTGTCACAGTTTTTGGCAC+AGG | + | chr4_1:60629054-60629073 | None:intergenic | 45.0% |
| ! | ACAAGGAGTCTAGAACAAGG+TGG | - | chr4_1:60629084-60629103 | Msa0561150:CDS | 45.0% |
| GTCATGATTCAACCAGGCAA+TGG | - | chr4_1:60629171-60629190 | Msa0561150:CDS | 45.0% | |
| CTCCACCAAGAAATAGAGCT+TGG | + | chr4_1:60629233-60629252 | None:intergenic | 45.0% | |
| AGGGAATTGAGGGAAGTTTC+TGG | + | chr4_1:60629459-60629478 | None:intergenic | 45.0% | |
| CCTACTCATCATTCCTCCAT+AGG | + | chr4_1:60629529-60629548 | None:intergenic | 45.0% | |
| CCTATGGAGGAATGATGAGT+AGG | - | chr4_1:60629526-60629545 | Msa0561150:CDS | 45.0% | |
| AGTATCCCACCACTTCCAAT+TGG | - | chr4_1:60629879-60629898 | Msa0561150:CDS | 45.0% | |
| !!! | GGTTTTGAGCAGTGGATTCA+AGG | + | chr4_1:60628489-60628508 | None:intergenic | 45.0% |
| TGGACTTGTGAGTCATGGAA+TGG | + | chr4_1:60628559-60628578 | None:intergenic | 45.0% | |
| TTGCACATATCACAGCTGCT+TGG | + | chr4_1:60628579-60628598 | None:intergenic | 45.0% | |
| CATATGAGAATACGAAGCGG+AGG | - | chr4_1:60628613-60628632 | Msa0561150:CDS | 45.0% | |
| TTACTGCACGTAGTTTAGCC+AGG | + | chr4_1:60628699-60628718 | None:intergenic | 45.0% | |
| TGAATCCAAGCCGTGTTATG+TGG | + | chr4_1:60628733-60628752 | None:intergenic | 45.0% | |
| ! | TAACACGGCTTGGATTCAAG+TGG | - | chr4_1:60628735-60628754 | Msa0561150:CDS | 45.0% |
| ! | AACACGGCTTGGATTCAAGT+GGG | - | chr4_1:60628736-60628755 | Msa0561150:CDS | 45.0% |
| ATTCAAGTGGGCGCAACTAT+TGG | - | chr4_1:60628748-60628767 | Msa0561150:CDS | 45.0% | |
| AAGATGTACAAAGGCCTGCA+GGG | + | chr4_1:60628819-60628838 | None:intergenic | 45.0% | |
| AAAGATGTACAAAGGCCTGC+AGG | + | chr4_1:60628820-60628839 | None:intergenic | 45.0% | |
| GCAGGCCTTTGTACATCTTT+AGG | - | chr4_1:60628820-60628839 | Msa0561150:CDS | 45.0% | |
| ! | TTTTGGGCAATAAGAGGAGG+CGG | - | chr4_1:60628982-60629001 | Msa0561150:CDS | 45.0% |
| !!! | ACTGTCACAGTTTTTGGCAC+AGG | + | chr4_1:60629054-60629073 | None:intergenic | 45.0% |
| ! | ACAAGGAGTCTAGAACAAGG+TGG | - | chr4_1:60629084-60629103 | Msa0561150:CDS | 45.0% |
| GTCATGATTCAACCAGGCAA+TGG | - | chr4_1:60629171-60629190 | Msa0561150:CDS | 45.0% | |
| CTCCACCAAGAAATAGAGCT+TGG | + | chr4_1:60629233-60629252 | None:intergenic | 45.0% | |
| AGGGAATTGAGGGAAGTTTC+TGG | + | chr4_1:60629459-60629478 | None:intergenic | 45.0% | |
| CCTACTCATCATTCCTCCAT+AGG | + | chr4_1:60629529-60629548 | None:intergenic | 45.0% | |
| CCTATGGAGGAATGATGAGT+AGG | - | chr4_1:60629526-60629545 | Msa0561150:CDS | 45.0% | |
| AGTATCCCACCACTTCCAAT+TGG | - | chr4_1:60629879-60629898 | Msa0561150:CDS | 45.0% | |
| CTGCTTGGACTTGTGAGTCA+TGG | + | chr4_1:60628564-60628583 | None:intergenic | 50.0% | |
| ACCGTTCATGATCCTAGACC+TGG | - | chr4_1:60628678-60628697 | Msa0561150:CDS | 50.0% | |
| ! | GCCAGGTCTAGGATCATGAA+CGG | + | chr4_1:60628682-60628701 | None:intergenic | 50.0% |
| CACGTAGTTTAGCCAGGTCT+AGG | + | chr4_1:60628693-60628712 | None:intergenic | 50.0% | |
| !! | CTCATTACCGGAGGTGCTTA+CGG | - | chr4_1:60628853-60628872 | Msa0561150:CDS | 50.0% |
| CATAGAACCGTAAGCACCTC+CGG | + | chr4_1:60628863-60628882 | None:intergenic | 50.0% | |
| CAACAACGTTGTCAACACCG+AGG | + | chr4_1:60628900-60628919 | None:intergenic | 50.0% | |
| GCAGCTTCGGAGTTATTCTC+TGG | - | chr4_1:60629010-60629029 | Msa0561150:CDS | 50.0% | |
| GCTTCGGAGTTATTCTCTGG+TGG | - | chr4_1:60629013-60629032 | Msa0561150:CDS | 50.0% | |
| TTTCCCTGGAGCAGAACTTC+TGG | + | chr4_1:60629381-60629400 | None:intergenic | 50.0% | |
| ! | CCTTGGATGTAGGTTTTCCC+TGG | + | chr4_1:60629395-60629414 | None:intergenic | 50.0% |
| CCAGGGAAAACCTACATCCA+AGG | - | chr4_1:60629392-60629411 | Msa0561150:CDS | 50.0% | |
| CTGCTTGGACTTGTGAGTCA+TGG | + | chr4_1:60628564-60628583 | None:intergenic | 50.0% | |
| ACCGTTCATGATCCTAGACC+TGG | - | chr4_1:60628678-60628697 | Msa0561150:CDS | 50.0% | |
| ! | GCCAGGTCTAGGATCATGAA+CGG | + | chr4_1:60628682-60628701 | None:intergenic | 50.0% |
| CACGTAGTTTAGCCAGGTCT+AGG | + | chr4_1:60628693-60628712 | None:intergenic | 50.0% | |
| !! | CTCATTACCGGAGGTGCTTA+CGG | - | chr4_1:60628853-60628872 | Msa0561150:CDS | 50.0% |
| CATAGAACCGTAAGCACCTC+CGG | + | chr4_1:60628863-60628882 | None:intergenic | 50.0% | |
| CAACAACGTTGTCAACACCG+AGG | + | chr4_1:60628900-60628919 | None:intergenic | 50.0% | |
| GCAGCTTCGGAGTTATTCTC+TGG | - | chr4_1:60629010-60629029 | Msa0561150:CDS | 50.0% | |
| GCTTCGGAGTTATTCTCTGG+TGG | - | chr4_1:60629013-60629032 | Msa0561150:CDS | 50.0% | |
| TTTCCCTGGAGCAGAACTTC+TGG | + | chr4_1:60629381-60629400 | None:intergenic | 50.0% | |
| ! | CCTTGGATGTAGGTTTTCCC+TGG | + | chr4_1:60629395-60629414 | None:intergenic | 50.0% |
| CCAGGGAAAACCTACATCCA+AGG | - | chr4_1:60629392-60629411 | Msa0561150:CDS | 50.0% | |
| AGCGGAGGACACGACTATGA+AGG | - | chr4_1:60628628-60628647 | Msa0561150:CDS | 55.0% | |
| TCAGTTCATGGCTTCCCTGC+AGG | - | chr4_1:60628802-60628821 | Msa0561150:CDS | 55.0% | |
| !! | GGTATCGGTGGCCTCATTAC+CGG | - | chr4_1:60628841-60628860 | Msa0561150:CDS | 55.0% |
| CGTAAGCACCTCCGGTAATG+AGG | + | chr4_1:60628855-60628874 | None:intergenic | 55.0% | |
| CCAGGAACACTACCATTGCC+TGG | + | chr4_1:60629186-60629205 | None:intergenic | 55.0% | |
| ! | CCAGGCAATGGTAGTGTTCC+TGG | - | chr4_1:60629183-60629202 | Msa0561150:CDS | 55.0% |
| ACCTCCAGAAGTTCTGCTCC+AGG | - | chr4_1:60629374-60629393 | Msa0561150:CDS | 55.0% | |
| CCTCCAGAAGTTCTGCTCCA+GGG | - | chr4_1:60629375-60629394 | Msa0561150:CDS | 55.0% | |
| AGCGGAGGACACGACTATGA+AGG | - | chr4_1:60628628-60628647 | Msa0561150:CDS | 55.0% | |
| TCAGTTCATGGCTTCCCTGC+AGG | - | chr4_1:60628802-60628821 | Msa0561150:CDS | 55.0% | |
| !! | GGTATCGGTGGCCTCATTAC+CGG | - | chr4_1:60628841-60628860 | Msa0561150:CDS | 55.0% |
| CGTAAGCACCTCCGGTAATG+AGG | + | chr4_1:60628855-60628874 | None:intergenic | 55.0% | |
| CCAGGAACACTACCATTGCC+TGG | + | chr4_1:60629186-60629205 | None:intergenic | 55.0% | |
| ! | CCAGGCAATGGTAGTGTTCC+TGG | - | chr4_1:60629183-60629202 | Msa0561150:CDS | 55.0% |
| ACCTCCAGAAGTTCTGCTCC+AGG | - | chr4_1:60629374-60629393 | Msa0561150:CDS | 55.0% | |
| CCTCCAGAAGTTCTGCTCCA+GGG | - | chr4_1:60629375-60629394 | Msa0561150:CDS | 55.0% | |
| ATCGGTGGCCTCATTACCGG+AGG | - | chr4_1:60628844-60628863 | Msa0561150:CDS | 60.0% | |
| TGGGCAATAAGAGGAGGCGG+AGG | - | chr4_1:60628985-60629004 | Msa0561150:CDS | 60.0% | |
| GCAATAAGAGGAGGCGGAGG+AGG | - | chr4_1:60628988-60629007 | Msa0561150:CDS | 60.0% | |
| CCCTGGAGCAGAACTTCTGG+AGG | + | chr4_1:60629378-60629397 | None:intergenic | 60.0% | |
| ATCGGTGGCCTCATTACCGG+AGG | - | chr4_1:60628844-60628863 | Msa0561150:CDS | 60.0% | |
| TGGGCAATAAGAGGAGGCGG+AGG | - | chr4_1:60628985-60629004 | Msa0561150:CDS | 60.0% | |
| GCAATAAGAGGAGGCGGAGG+AGG | - | chr4_1:60628988-60629007 | Msa0561150:CDS | 60.0% | |
| CCCTGGAGCAGAACTTCTGG+AGG | + | chr4_1:60629378-60629397 | None:intergenic | 60.0% | |
| GGAGGCGGAGGAGGCAGCTT+CGG | - | chr4_1:60628997-60629016 | Msa0561150:CDS | 70.0% | |
| GGAGGCGGAGGAGGCAGCTT+CGG | - | chr4_1:60628997-60629016 | Msa0561150:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 60628313 | 60629908 | 60628313 | ID=Msa0561150;Name=Msa0561150 |
| chr4_1 | mRNA | 60628313 | 60629908 | 60628313 | ID=Msa0561150-mRNA-1;Parent=Msa0561150;Name=Msa0561150-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|531 |
| chr4_1 | exon | 60628313 | 60629908 | 60628313 | ID=Msa0561150-mRNA-1:exon:18956;Parent=Msa0561150-mRNA-1 |
| chr4_1 | CDS | 60628313 | 60629908 | 60628313 | ID=Msa0561150-mRNA-1:cds;Parent=Msa0561150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
