Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561610 | XP_003608501.1 | 100.000 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 6.42e-104 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561610 | sp|O22584|RS14_LUPLU | 94.928 | 138 | 7 | 0 | 3 | 140 | 2 | 139 | 1.49e-91 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561610 | B7FGP1 | 100.000 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 3.07e-104 | 303 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0561610 | Msa0821070 | 0.804352 | 2.250973e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561610 | MtrunA17_Chr4g0052211 | 100.000 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 5.90e-108 | 303 |
| Msa0561610 | MtrunA17_Chr2g0286111 | 98.675 | 151 | 2 | 0 | 1 | 151 | 1 | 151 | 8.04e-107 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561610 | AT3G11510.1 | 90.580 | 138 | 13 | 0 | 3 | 140 | 2 | 139 | 9.44e-91 | 260 |
| Msa0561610 | AT3G52580.1 | 89.855 | 138 | 14 | 0 | 3 | 140 | 2 | 139 | 3.52e-90 | 259 |
| Msa0561610 | AT2G36160.1 | 89.130 | 138 | 15 | 0 | 3 | 140 | 2 | 139 | 1.91e-89 | 257 |
| Msa0561610 | ATCG00750.1 | 33.613 | 119 | 70 | 2 | 29 | 147 | 28 | 137 | 7.74e-12 | 59.7 |
Find 72 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAATTTATCTATGGATT+AGG | 0.216710 | 4_1:-61168471 | None:intergenic |
| CCCTTATGAGTATAACTTAA+TGG | 0.232326 | 4_1:+61170965 | Msa0561610:three_prime_UTR |
| CAGCATGTAACTGATTTATC+TGG | 0.235737 | 4_1:+61168987 | Msa0561610:intron |
| CTGAGTTTGCTATGGTATTA+TGG | 0.243579 | 4_1:+61170665 | Msa0561610:exon |
| TATATCTTGGGCTGGGCTTT+TGG | 0.261459 | 4_1:-61168436 | None:intergenic |
| AGAGTCACTGTTTCTTCCTT+TGG | 0.286906 | 4_1:-61168797 | None:intergenic |
| ATAAACTCATGTAGAACTTT+TGG | 0.286970 | 4_1:-61170813 | None:intergenic |
| CACGATGAAGGTATCGTTAA+AGG | 0.289627 | 4_1:-61168876 | None:intergenic |
| AGAAATTTATCTATGGATTA+GGG | 0.303040 | 4_1:-61168470 | None:intergenic |
| GGGTGCTGTCAGAAGGAATT+GGG | 0.306077 | 4_1:-61170611 | None:intergenic |
| TTTCTTTCCAGACTGTATTA+TGG | 0.316848 | 4_1:+61170729 | Msa0561610:three_prime_UTR |
| TACCCCTTCTACCACTCTTT+CGG | 0.329294 | 4_1:-61170635 | None:intergenic |
| GAGACACTTGTCCGTATTAC+TGG | 0.335548 | 4_1:+61169014 | Msa0561610:CDS |
| CGGGTGCTGTCAGAAGGAAT+TGG | 0.336102 | 4_1:-61170612 | None:intergenic |
| CGGAGAGCAGCCTGAGCACC+AGG | 0.369620 | 4_1:-61170289 | None:intergenic |
| GCCATTAAGTTATACTCATA+AGG | 0.376078 | 4_1:-61170966 | None:intergenic |
| CTCCGTGCCTTGGCTCGGTC+AGG | 0.393863 | 4_1:+61170307 | Msa0561610:CDS |
| AACACCAGGCCCTGGTGCTC+AGG | 0.414511 | 4_1:+61170279 | Msa0561610:CDS |
| CTGCTCTCCGTGCCTTGGCT+CGG | 0.417239 | 4_1:+61170302 | Msa0561610:CDS |
| GAGAAGAAGAAATTTATCTA+TGG | 0.418279 | 4_1:-61168477 | None:intergenic |
| CCCGCCGAAAGAGTGGTAGA+AGG | 0.418808 | 4_1:+61170631 | Msa0561610:CDS |
| TGTGAAAGTATATCTTGGGC+TGG | 0.427287 | 4_1:-61168444 | None:intergenic |
| CACATCAAACTCCGTGCTAC+TGG | 0.433708 | 4_1:+61170241 | Msa0561610:CDS |
| TCAGGCTGCTCTCCGTGCCT+TGG | 0.439119 | 4_1:+61170297 | Msa0561610:CDS |
| CGTACCATTGTTGAAGGTGT+TGG | 0.439846 | 4_1:-61168578 | None:intergenic |
| GCAGCCTGAGCACCAGGGCC+TGG | 0.441174 | 4_1:-61170283 | None:intergenic |
| AAATGCAATTACCTTGCATC+TGG | 0.446928 | 4_1:-61170075 | None:intergenic |
| CTATCTTTCAGGTGGAATGA+AGG | 0.447568 | 4_1:+61169989 | Msa0561610:intron |
| AGAGTGGTAGAAGGGGTAGA+AGG | 0.460011 | 4_1:+61170640 | Msa0561610:CDS |
| GTGAAAGTATATCTTGGGCT+GGG | 0.467093 | 4_1:-61168443 | None:intergenic |
| CCCTTCTACCACTCTTTCGG+CGG | 0.475876 | 4_1:-61170632 | None:intergenic |
| CCATTAAGTTATACTCATAA+GGG | 0.478409 | 4_1:-61170965 | None:intergenic |
| TGTTCACCATCTTTAACAGC+TGG | 0.478914 | 4_1:-61168824 | None:intergenic |
| GTTCTCTCTGAAGAAGAAGA+AGG | 0.479425 | 4_1:+61168528 | Msa0561610:five_prime_UTR |
| TGTGTTCTGGAACAGGAGTT+GGG | 0.489912 | 4_1:+61170205 | Msa0561610:intron |
| CAGAGAGAACAAAGCTTCGA+TGG | 0.494527 | 4_1:-61168515 | None:intergenic |
| GCACGCCGGCGGATTGAAGC+AGG | 0.498204 | 4_1:+61168552 | Msa0561610:five_prime_UTR |
| AGTGGGAATTTCACAGCCAT+TGG | 0.498585 | 4_1:-61171013 | None:intergenic |
| GAATATGCCATAATACAGTC+TGG | 0.507182 | 4_1:-61170736 | None:intergenic |
| GGATTCCTGCTTCAATCCGC+CGG | 0.508270 | 4_1:-61168557 | None:intergenic |
| AAACACACTTACCAGTAATA+CGG | 0.508460 | 4_1:-61169025 | None:intergenic |
| CCTTCTACCACTCTTTCGGC+GGG | 0.512822 | 4_1:-61170631 | None:intergenic |
| GCAGCAAGCATAGCAGCATA+TGG | 0.514159 | 4_1:-61170038 | None:intergenic |
| GCTCGGTCAGGAATGAAAAT+CGG | 0.525104 | 4_1:+61170319 | Msa0561610:CDS |
| TGCAATTACCTTGCATCTGG+TGG | 0.525795 | 4_1:-61170072 | None:intergenic |
| AGTTAACGTACCATTGTTGA+AGG | 0.530074 | 4_1:-61168584 | None:intergenic |
| CCGCCGAAAGAGTGGTAGAA+GGG | 0.532687 | 4_1:+61170632 | Msa0561610:CDS |
| AGCATGTAACTGATTTATCT+GGG | 0.535775 | 4_1:+61168988 | Msa0561610:intron |
| AAGGAAGAAACAGTGACTCT+TGG | 0.536189 | 4_1:+61168800 | Msa0561610:CDS |
| TTTCGGCGGGTGCTGTCAGA+AGG | 0.542032 | 4_1:-61170618 | None:intergenic |
| GGTAAATAGACTCACGATGA+AGG | 0.542298 | 4_1:-61168888 | None:intergenic |
| ATTGTAGTCGTCGAAGAGAA+AGG | 0.542368 | 4_1:+61168766 | Msa0561610:intron |
| CTTGGTCCAGCTGTTAAAGA+TGG | 0.556489 | 4_1:+61168818 | Msa0561610:CDS |
| TCTTGTTTCCTCCAGTAGCA+CGG | 0.560976 | 4_1:-61170252 | None:intergenic |
| AAGACTAAAACACCAGGCCC+TGG | 0.563534 | 4_1:+61170271 | Msa0561610:CDS |
| GAGAAAGGTTAGAGAGCCAA+AGG | 0.564924 | 4_1:+61168781 | Msa0561610:CDS |
| GTTTGCTATGGTATTATGGA+AGG | 0.571748 | 4_1:+61170669 | Msa0561610:three_prime_UTR |
| AGAAGGCTCTGAGTTTGCTA+TGG | 0.575425 | 4_1:+61170657 | Msa0561610:exon |
| GAATCCAACACCTTCAACAA+TGG | 0.577889 | 4_1:+61168574 | Msa0561610:exon |
| GACAGCACCCGCCGAAAGAG+TGG | 0.584213 | 4_1:+61170624 | Msa0561610:CDS |
| TTTCATTCCTGACCGAGCCA+AGG | 0.588154 | 4_1:-61170314 | None:intergenic |
| TTCCTGACCGAGCCAAGGCA+CGG | 0.590022 | 4_1:-61170309 | None:intergenic |
| ACTTACTATTAAAATACCAA+TGG | 0.590835 | 4_1:+61170997 | Msa0561610:three_prime_UTR |
| GGAATGAAAATCGGTCGCAT+AGG | 0.601542 | 4_1:+61170328 | Msa0561610:CDS |
| AAGAAGAAGGTGCACGCCGG+CGG | 0.611862 | 4_1:+61168541 | Msa0561610:five_prime_UTR |
| AGATGTCGCCACCAGATGCA+AGG | 0.617051 | 4_1:+61170064 | Msa0561610:CDS |
| GGTGCTGTCAGAAGGAATTG+GGG | 0.625333 | 4_1:-61170610 | None:intergenic |
| CGCCGAAAGAGTGGTAGAAG+GGG | 0.627165 | 4_1:+61170633 | Msa0561610:CDS |
| ATCAAACTCCGTGCTACTGG+AGG | 0.632452 | 4_1:+61170244 | Msa0561610:CDS |
| AAGAAGAAGAAGGTGCACGC+CGG | 0.658500 | 4_1:+61168538 | Msa0561610:five_prime_UTR |
| GGAGAGCAGCCTGAGCACCA+GGG | 0.667118 | 4_1:-61170288 | None:intergenic |
| GGAAACAAGACTAAAACACC+AGG | 0.683642 | 4_1:+61170265 | Msa0561610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAACACACAATTTTTTT+TGG | - | chr4_1:61168932-61168951 | None:intergenic | 15.0% |
| !! | AAAAATAAGTCAATCAAAAT+GGG | - | chr4_1:61169321-61169340 | None:intergenic | 15.0% |
| !! | AAAAAATAAGTCAATCAAAA+TGG | - | chr4_1:61169322-61169341 | None:intergenic | 15.0% |
| !!! | TTTTGATAAATTTTCCAAAA+TGG | - | chr4_1:61169513-61169532 | None:intergenic | 15.0% |
| !!! | AGAAATTTATCTATGGATTA+GGG | - | chr4_1:61168473-61168492 | None:intergenic | 20.0% |
| !! | AAGAAATTTATCTATGGATT+AGG | - | chr4_1:61168474-61168493 | None:intergenic | 20.0% |
| !! | CAATTCAATTTCAATTTCAA+AGG | - | chr4_1:61168702-61168721 | None:intergenic | 20.0% |
| !! | ACTTATCATGATTAGATATA+AGG | + | chr4_1:61169295-61169314 | Msa0561610:intron | 20.0% |
| !! | ATTGTTATAGAAATAGCTTA+TGG | - | chr4_1:61169438-61169457 | None:intergenic | 20.0% |
| !! | AACACCAAATAAAAAACATT+TGG | + | chr4_1:61169739-61169758 | Msa0561610:intron | 20.0% |
| !! | ACACCAAATAAAAAACATTT+GGG | + | chr4_1:61169740-61169759 | Msa0561610:intron | 20.0% |
| !! | ACCCATAATGAAAAATATTT+GGG | - | chr4_1:61169879-61169898 | None:intergenic | 20.0% |
| !! | AACCCATAATGAAAAATATT+TGG | - | chr4_1:61169880-61169899 | None:intergenic | 20.0% |
| !! | ATTCAATCAAATTAAAAGCA+GGG | - | chr4_1:61170142-61170161 | None:intergenic | 20.0% |
| !! | AATTCAATCAAATTAAAAGC+AGG | - | chr4_1:61170143-61170162 | None:intergenic | 20.0% |
| !!! | TATTCTTTTAGTCCATTTTT+AGG | + | chr4_1:61170351-61170370 | Msa0561610:intron | 20.0% |
| !! | AATACAAAATAAGAGTAACT+GGG | - | chr4_1:61170498-61170517 | None:intergenic | 20.0% |
| !! | CTGCAAATTTAAAAAACAAA+AGG | - | chr4_1:61170581-61170600 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTTAAATTTGCAG+AGG | + | chr4_1:61170581-61170600 | Msa0561610:intron | 20.0% |
| !!! | TATTTGATTTACATCTTTTG+CGG | + | chr4_1:61170881-61170900 | Msa0561610:three_prime_UTR | 20.0% |
| !! | ACTTACTATTAAAATACCAA+TGG | + | chr4_1:61170997-61171016 | Msa0561610:three_prime_UTR | 20.0% |
| !!! | GTTTTGTGAAAGTATATCTT+GGG | - | chr4_1:61168451-61168470 | None:intergenic | 25.0% |
| ! | GAGAAGAAGAAATTTATCTA+TGG | - | chr4_1:61168480-61168499 | None:intergenic | 25.0% |
| ! | ATTACACAGATCAATGTTTA+TGG | - | chr4_1:61168610-61168629 | None:intergenic | 25.0% |
| ! | ATTTCACTACAAACACTTTA+TGG | + | chr4_1:61168631-61168650 | Msa0561610:intron | 25.0% |
| ! | TGGAATGAATGATAAAAAGA+AGG | - | chr4_1:61168912-61168931 | None:intergenic | 25.0% |
| !! | TATGTTTGATATGTGTTTTG+TGG | + | chr4_1:61169172-61169191 | Msa0561610:intron | 25.0% |
| ! | TAGCTTATATGAAAACACTT+GGG | - | chr4_1:61169473-61169492 | None:intergenic | 25.0% |
| ! | ATAGCTTATATGAAAACACT+TGG | - | chr4_1:61169474-61169493 | None:intergenic | 25.0% |
| ! | AAAATTGTAAATGGCAAGAA+GGG | - | chr4_1:61169675-61169694 | None:intergenic | 25.0% |
| ! | TTGCTCCATTTATATTATCA+GGG | - | chr4_1:61169704-61169723 | None:intergenic | 25.0% |
| ! | ATTGCTCCATTTATATTATC+AGG | - | chr4_1:61169705-61169724 | None:intergenic | 25.0% |
| !! | TGCCCAAATATTTTTCATTA+TGG | + | chr4_1:61169874-61169893 | Msa0561610:intron | 25.0% |
| !! | GCCCAAATATTTTTCATTAT+GGG | + | chr4_1:61169875-61169894 | Msa0561610:intron | 25.0% |
| ! | TATCCAATTTACTATCTTTC+AGG | + | chr4_1:61169978-61169997 | Msa0561610:intron | 25.0% |
| ! | TTCAATCAAATTAAAAGCAG+GGG | - | chr4_1:61170141-61170160 | None:intergenic | 25.0% |
| ! | GAATACAAAATAAGAGTAAC+TGG | - | chr4_1:61170499-61170518 | None:intergenic | 25.0% |
| ! | TCTGGAAAGAAAAAAAAACA+CGG | - | chr4_1:61170721-61170740 | None:intergenic | 25.0% |
| !! | ATAAACTCATGTAGAACTTT+TGG | - | chr4_1:61170816-61170835 | None:intergenic | 25.0% |
| ! | CCATTAAGTTATACTCATAA+GGG | - | chr4_1:61170968-61170987 | None:intergenic | 25.0% |
| !! | GGTTTTGTGAAAGTATATCT+TGG | - | chr4_1:61168452-61168471 | None:intergenic | 30.0% |
| ! | AGATCTGATAGTTTGTGAAA+TGG | + | chr4_1:61168732-61168751 | Msa0561610:intron | 30.0% |
| ! | AAAGATGGTGAACAAGTTTT+TGG | + | chr4_1:61168833-61168852 | Msa0561610:CDS | 30.0% |
| ! | AGCATGTAACTGATTTATCT+GGG | + | chr4_1:61168988-61169007 | Msa0561610:intron | 30.0% |
| AAACACACTTACCAGTAATA+CGG | - | chr4_1:61169028-61169047 | None:intergenic | 30.0% | |
| AAATAGCTTATGGACATGTT+AGG | - | chr4_1:61169428-61169447 | None:intergenic | 30.0% | |
| !!! | ACACTTGTTTTAGAGAACTT+AGG | - | chr4_1:61169611-61169630 | None:intergenic | 30.0% |
| CAAAATTGTAAATGGCAAGA+AGG | - | chr4_1:61169676-61169695 | None:intergenic | 30.0% | |
| CTCTACCCTGATAATATAAA+TGG | + | chr4_1:61169696-61169715 | Msa0561610:intron | 30.0% | |
| AAATGGAGCAATTCTTCTAT+TGG | + | chr4_1:61169713-61169732 | Msa0561610:intron | 30.0% | |
| !!! | GTGCCCAAATGTTTTTTATT+TGG | - | chr4_1:61169746-61169765 | None:intergenic | 30.0% |
| ATAAATGAGCGATTCTACTA+TGG | - | chr4_1:61169907-61169926 | None:intergenic | 30.0% | |
| AAGCTAATTAGATACTAAGC+TGG | - | chr4_1:61170557-61170576 | None:intergenic | 30.0% | |
| !!! | AGCTGCTTCTGTTTTTATTT+TGG | + | chr4_1:61170692-61170711 | Msa0561610:three_prime_UTR | 30.0% |
| TTTCTTTCCAGACTGTATTA+TGG | + | chr4_1:61170729-61170748 | Msa0561610:three_prime_UTR | 30.0% | |
| ! | TGCTTCATCTAACTTTTGTT+CGG | + | chr4_1:61170915-61170934 | Msa0561610:three_prime_UTR | 30.0% |
| CCCTTATGAGTATAACTTAA+TGG | + | chr4_1:61170965-61170984 | Msa0561610:three_prime_UTR | 30.0% | |
| GCCATTAAGTTATACTCATA+AGG | - | chr4_1:61170969-61170988 | None:intergenic | 30.0% | |
| AGTTAACGTACCATTGTTGA+AGG | - | chr4_1:61168587-61168606 | None:intergenic | 35.0% | |
| ! | CTGATAGTTTGTGAAATGGT+TGG | + | chr4_1:61168736-61168755 | Msa0561610:intron | 35.0% |
| ! | CAGCATGTAACTGATTTATC+TGG | + | chr4_1:61168987-61169006 | Msa0561610:intron | 35.0% |
| CAGTTGGAAATAACCAAACA+GGG | - | chr4_1:61169272-61169291 | None:intergenic | 35.0% | |
| ACAGTTGGAAATAACCAAAC+AGG | - | chr4_1:61169273-61169292 | None:intergenic | 35.0% | |
| AATCATGATAAGTGCACAGT+TGG | - | chr4_1:61169288-61169307 | None:intergenic | 35.0% | |
| !! | ATTTTCCAAAATGGCTTGTG+AGG | - | chr4_1:61169504-61169523 | None:intergenic | 35.0% |
| GGGTAGAGCAAAATTGTAAA+TGG | - | chr4_1:61169684-61169703 | None:intergenic | 35.0% | |
| CCACCTGAAAGATAGTAAAT+TGG | - | chr4_1:61169984-61170003 | None:intergenic | 35.0% | |
| CCAATTTACTATCTTTCAGG+TGG | + | chr4_1:61169981-61170000 | Msa0561610:intron | 35.0% | |
| AAATGCAATTACCTTGCATC+TGG | - | chr4_1:61170078-61170097 | None:intergenic | 35.0% | |
| CAAGACATGCATCCTAAAAA+TGG | - | chr4_1:61170366-61170385 | None:intergenic | 35.0% | |
| !!! | CATTTTTAGGATGCATGTCT+TGG | + | chr4_1:61170364-61170383 | Msa0561610:intron | 35.0% |
| CAAAATAAGAGTAACTGGGA+AGG | - | chr4_1:61170494-61170513 | None:intergenic | 35.0% | |
| !! | CTGAGTTTGCTATGGTATTA+TGG | + | chr4_1:61170665-61170684 | Msa0561610:exon | 35.0% |
| !! | GTTTGCTATGGTATTATGGA+AGG | + | chr4_1:61170669-61170688 | Msa0561610:three_prime_UTR | 35.0% |
| GAATATGCCATAATACAGTC+TGG | - | chr4_1:61170739-61170758 | None:intergenic | 35.0% | |
| ! | GTGAAAGTATATCTTGGGCT+GGG | - | chr4_1:61168446-61168465 | None:intergenic | 40.0% |
| ! | TGTGAAAGTATATCTTGGGC+TGG | - | chr4_1:61168447-61168466 | None:intergenic | 40.0% |
| ! | GTTCTCTCTGAAGAAGAAGA+AGG | + | chr4_1:61168528-61168547 | Msa0561610:five_prime_UTR | 40.0% |
| GAATCCAACACCTTCAACAA+TGG | + | chr4_1:61168574-61168593 | Msa0561610:exon | 40.0% | |
| ATTGTAGTCGTCGAAGAGAA+AGG | + | chr4_1:61168766-61168785 | Msa0561610:intron | 40.0% | |
| ! | AGAGTCACTGTTTCTTCCTT+TGG | - | chr4_1:61168800-61168819 | None:intergenic | 40.0% |
| AAGGAAGAAACAGTGACTCT+TGG | + | chr4_1:61168800-61168819 | Msa0561610:CDS | 40.0% | |
| TGTTCACCATCTTTAACAGC+TGG | - | chr4_1:61168827-61168846 | None:intergenic | 40.0% | |
| !! | CACGATGAAGGTATCGTTAA+AGG | - | chr4_1:61168879-61168898 | None:intergenic | 40.0% |
| GGTAAATAGACTCACGATGA+AGG | - | chr4_1:61168891-61168910 | None:intergenic | 40.0% | |
| ! | AGGGCACAAATCTTCACTTT+TGG | - | chr4_1:61169253-61169272 | None:intergenic | 40.0% |
| ! | AATGGCAAGAAGGGTATGTT+TGG | - | chr4_1:61169666-61169685 | None:intergenic | 40.0% |
| ! | CTATCTTTCAGGTGGAATGA+AGG | + | chr4_1:61169989-61170008 | Msa0561610:intron | 40.0% |
| !! | AATTTGCTGATCCTGTGTTC+TGG | + | chr4_1:61170192-61170211 | Msa0561610:intron | 40.0% |
| GGAAACAAGACTAAAACACC+AGG | + | chr4_1:61170265-61170284 | Msa0561610:CDS | 40.0% | |
| !! | TATATCTTGGGCTGGGCTTT+TGG | - | chr4_1:61168439-61168458 | None:intergenic | 45.0% |
| CAGAGAGAACAAAGCTTCGA+TGG | - | chr4_1:61168518-61168537 | None:intergenic | 45.0% | |
| ! | CGTACCATTGTTGAAGGTGT+TGG | - | chr4_1:61168581-61168600 | None:intergenic | 45.0% |
| GAGAAAGGTTAGAGAGCCAA+AGG | + | chr4_1:61168781-61168800 | Msa0561610:CDS | 45.0% | |
| CTTGGTCCAGCTGTTAAAGA+TGG | + | chr4_1:61168818-61168837 | Msa0561610:CDS | 45.0% | |
| GAGACACTTGTCCGTATTAC+TGG | + | chr4_1:61169014-61169033 | Msa0561610:CDS | 45.0% | |
| GTGAAGATTTGTGCCCTGTT+TGG | + | chr4_1:61169256-61169275 | Msa0561610:intron | 45.0% | |
| TGCAATTACCTTGCATCTGG+TGG | - | chr4_1:61170075-61170094 | None:intergenic | 45.0% | |
| !! | TGTGTTCTGGAACAGGAGTT+GGG | + | chr4_1:61170205-61170224 | Msa0561610:intron | 45.0% |
| ! | TCTTGTTTCCTCCAGTAGCA+CGG | - | chr4_1:61170255-61170274 | None:intergenic | 45.0% |
| GCTCGGTCAGGAATGAAAAT+CGG | + | chr4_1:61170319-61170338 | Msa0561610:CDS | 45.0% | |
| GGAATGAAAATCGGTCGCAT+AGG | + | chr4_1:61170328-61170347 | Msa0561610:CDS | 45.0% | |
| TACCCCTTCTACCACTCTTT+CGG | - | chr4_1:61170638-61170657 | None:intergenic | 45.0% | |
| !! | AGAAGGCTCTGAGTTTGCTA+TGG | + | chr4_1:61170657-61170676 | Msa0561610:exon | 45.0% |
| ! | AAGAAGAAGAAGGTGCACGC+CGG | + | chr4_1:61168538-61168557 | Msa0561610:five_prime_UTR | 50.0% |
| ! | CCAAAATGGCTTGTGAGGAC+AGG | - | chr4_1:61169499-61169518 | None:intergenic | 50.0% |
| ! | CCTGTCCTCACAAGCCATTT+TGG | + | chr4_1:61169496-61169515 | Msa0561610:intron | 50.0% |
| CTTCGTTGCCATTAACCAGC+TGG | + | chr4_1:61169931-61169950 | Msa0561610:intron | 50.0% | |
| ACATGCGTCCAGCTGGTTAA+TGG | - | chr4_1:61169942-61169961 | None:intergenic | 50.0% | |
| GCAGCAAGCATAGCAGCATA+TGG | - | chr4_1:61170041-61170060 | None:intergenic | 50.0% | |
| !! | CTGATCCTGTGTTCTGGAAC+AGG | + | chr4_1:61170198-61170217 | Msa0561610:intron | 50.0% |
| CAACTCCTGTTCCAGAACAC+AGG | - | chr4_1:61170206-61170225 | None:intergenic | 50.0% | |
| !! | CTGTGTTCTGGAACAGGAGT+TGG | + | chr4_1:61170204-61170223 | Msa0561610:intron | 50.0% |
| CACATCAAACTCCGTGCTAC+TGG | + | chr4_1:61170241-61170260 | Msa0561610:CDS | 50.0% | |
| ! | ATCAAACTCCGTGCTACTGG+AGG | + | chr4_1:61170244-61170263 | Msa0561610:CDS | 50.0% |
| AAGACTAAAACACCAGGCCC+TGG | + | chr4_1:61170271-61170290 | Msa0561610:CDS | 50.0% | |
| TTTCATTCCTGACCGAGCCA+AGG | - | chr4_1:61170317-61170336 | None:intergenic | 50.0% | |
| ATCACCAGCTTAGAGCAGCA+GGG | - | chr4_1:61170400-61170419 | None:intergenic | 50.0% | |
| ! | TCTAAGCTGGTGATGTGGTC+TGG | + | chr4_1:61170406-61170425 | Msa0561610:intron | 50.0% |
| ! | GGTGCTGTCAGAAGGAATTG+GGG | - | chr4_1:61170613-61170632 | None:intergenic | 50.0% |
| ! | GGGTGCTGTCAGAAGGAATT+GGG | - | chr4_1:61170614-61170633 | None:intergenic | 50.0% |
| AGAGTGGTAGAAGGGGTAGA+AGG | + | chr4_1:61170640-61170659 | Msa0561610:CDS | 50.0% | |
| GGATTCCTGCTTCAATCCGC+CGG | - | chr4_1:61168560-61168579 | None:intergenic | 55.0% | |
| GACTTAGACATGCGTCCAGC+TGG | - | chr4_1:61169949-61169968 | None:intergenic | 55.0% | |
| AGATGTCGCCACCAGATGCA+AGG | + | chr4_1:61170064-61170083 | Msa0561610:CDS | 55.0% | |
| ! | TGTTCCCTGCTGCTCTAAGC+TGG | + | chr4_1:61170393-61170412 | Msa0561610:intron | 55.0% |
| CATCACCAGCTTAGAGCAGC+AGG | - | chr4_1:61170401-61170420 | None:intergenic | 55.0% | |
| ! | GCTGCTCTAAGCTGGTGATG+TGG | + | chr4_1:61170401-61170420 | Msa0561610:intron | 55.0% |
| ! | CGGGTGCTGTCAGAAGGAAT+TGG | - | chr4_1:61170615-61170634 | None:intergenic | 55.0% |
| CCTTCTACCACTCTTTCGGC+GGG | - | chr4_1:61170634-61170653 | None:intergenic | 55.0% | |
| CCCTTCTACCACTCTTTCGG+CGG | - | chr4_1:61170635-61170654 | None:intergenic | 55.0% | |
| CCGCCGAAAGAGTGGTAGAA+GGG | + | chr4_1:61170632-61170651 | Msa0561610:CDS | 55.0% | |
| CGCCGAAAGAGTGGTAGAAG+GGG | + | chr4_1:61170633-61170652 | Msa0561610:CDS | 55.0% | |
| ! | AAGAAGAAGGTGCACGCCGG+CGG | + | chr4_1:61168541-61168560 | Msa0561610:five_prime_UTR | 60.0% |
| TTCCTGACCGAGCCAAGGCA+CGG | - | chr4_1:61170312-61170331 | None:intergenic | 60.0% | |
| ! | TTTCGGCGGGTGCTGTCAGA+AGG | - | chr4_1:61170621-61170640 | None:intergenic | 60.0% |
| CCCGCCGAAAGAGTGGTAGA+AGG | + | chr4_1:61170631-61170650 | Msa0561610:CDS | 60.0% | |
| AACACCAGGCCCTGGTGCTC+AGG | + | chr4_1:61170279-61170298 | Msa0561610:CDS | 65.0% | |
| GGAGAGCAGCCTGAGCACCA+GGG | - | chr4_1:61170291-61170310 | None:intergenic | 65.0% | |
| TCAGGCTGCTCTCCGTGCCT+TGG | + | chr4_1:61170297-61170316 | Msa0561610:CDS | 65.0% | |
| CTGCTCTCCGTGCCTTGGCT+CGG | + | chr4_1:61170302-61170321 | Msa0561610:CDS | 65.0% | |
| GACAGCACCCGCCGAAAGAG+TGG | + | chr4_1:61170624-61170643 | Msa0561610:CDS | 65.0% | |
| !! | GCACGCCGGCGGATTGAAGC+AGG | + | chr4_1:61168552-61168571 | Msa0561610:five_prime_UTR | 70.0% |
| CGGAGAGCAGCCTGAGCACC+AGG | - | chr4_1:61170292-61170311 | None:intergenic | 70.0% | |
| !! | CTCCGTGCCTTGGCTCGGTC+AGG | + | chr4_1:61170307-61170326 | Msa0561610:CDS | 70.0% |
| GCAGCCTGAGCACCAGGGCC+TGG | - | chr4_1:61170286-61170305 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 61168409 | 61171033 | 61168409 | ID=Msa0561610;Name=Msa0561610 |
| chr4_1 | mRNA | 61168409 | 61171033 | 61168409 | ID=Msa0561610-mRNA-1;Parent=Msa0561610;Name=Msa0561610-mRNA-1;_AED=0.03;_eAED=0.03;_QI=184|1|1|1|1|1|6|365|151 |
| chr4_1 | exon | 61168409 | 61168595 | 61168409 | ID=Msa0561610-mRNA-1:exon:19133;Parent=Msa0561610-mRNA-1 |
| chr4_1 | exon | 61168773 | 61168895 | 61168773 | ID=Msa0561610-mRNA-1:exon:19134;Parent=Msa0561610-mRNA-1 |
| chr4_1 | exon | 61168990 | 61169035 | 61168990 | ID=Msa0561610-mRNA-1:exon:19135;Parent=Msa0561610-mRNA-1 |
| chr4_1 | exon | 61170000 | 61170085 | 61170000 | ID=Msa0561610-mRNA-1:exon:19136;Parent=Msa0561610-mRNA-1 |
| chr4_1 | exon | 61170220 | 61170349 | 61170220 | ID=Msa0561610-mRNA-1:exon:19137;Parent=Msa0561610-mRNA-1 |
| chr4_1 | exon | 61170601 | 61171033 | 61170601 | ID=Msa0561610-mRNA-1:exon:19138;Parent=Msa0561610-mRNA-1 |
| chr4_1 | five_prime_UTR | 61168409 | 61168592 | 61168409 | ID=Msa0561610-mRNA-1:five_prime_utr;Parent=Msa0561610-mRNA-1 |
| chr4_1 | CDS | 61168593 | 61168595 | 61168593 | ID=Msa0561610-mRNA-1:cds;Parent=Msa0561610-mRNA-1 |
| chr4_1 | CDS | 61168773 | 61168895 | 61168773 | ID=Msa0561610-mRNA-1:cds;Parent=Msa0561610-mRNA-1 |
| chr4_1 | CDS | 61168990 | 61169035 | 61168990 | ID=Msa0561610-mRNA-1:cds;Parent=Msa0561610-mRNA-1 |
| chr4_1 | CDS | 61170000 | 61170085 | 61170000 | ID=Msa0561610-mRNA-1:cds;Parent=Msa0561610-mRNA-1 |
| chr4_1 | CDS | 61170220 | 61170349 | 61170220 | ID=Msa0561610-mRNA-1:cds;Parent=Msa0561610-mRNA-1 |
| chr4_1 | CDS | 61170601 | 61170668 | 61170601 | ID=Msa0561610-mRNA-1:cds;Parent=Msa0561610-mRNA-1 |
| chr4_1 | three_prime_UTR | 61170669 | 61171033 | 61170669 | ID=Msa0561610-mRNA-1:three_prime_utr;Parent=Msa0561610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
