Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561870 | XP_013457399.1 | 98.560 | 486 | 7 | 0 | 1 | 486 | 1 | 486 | 0.0 | 995 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561870 | sp|Q8GX46|BH091_ARATH | 36.047 | 516 | 197 | 12 | 11 | 483 | 1 | 426 | 3.34e-89 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561870 | G8A1V6 | 98.560 | 486 | 7 | 0 | 1 | 486 | 1 | 486 | 0.0 | 995 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0561870 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0561870 | Msa0655390 | 0.993952 | 1.903791e-203 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561870 | MtrunA17_Chr4g0052841 | 98.560 | 486 | 7 | 0 | 1 | 486 | 1 | 486 | 0.0 | 995 |
| Msa0561870 | MtrunA17_Chr4g0052821 | 79.596 | 495 | 73 | 8 | 1 | 482 | 1 | 480 | 0.0 | 742 |
| Msa0561870 | MtrunA17_Chr3g0131691 | 28.643 | 199 | 129 | 5 | 278 | 470 | 285 | 476 | 2.22e-16 | 81.6 |
| Msa0561870 | MtrunA17_Chr0c01g0489461 | 24.500 | 200 | 134 | 3 | 293 | 477 | 197 | 394 | 1.24e-12 | 69.3 |
| Msa0561870 | MtrunA17_Chr1g0185621 | 30.872 | 149 | 85 | 4 | 293 | 433 | 476 | 614 | 2.98e-12 | 68.9 |
| Msa0561870 | MtrunA17_Chr8g0346161 | 28.049 | 164 | 83 | 5 | 293 | 443 | 292 | 433 | 5.06e-12 | 67.8 |
| Msa0561870 | MtrunA17_Chr7g0252041 | 24.468 | 188 | 129 | 4 | 291 | 470 | 285 | 467 | 1.75e-11 | 66.2 |
| Msa0561870 | MtrunA17_Chr8g0366751 | 31.579 | 171 | 110 | 3 | 293 | 460 | 463 | 629 | 2.62e-11 | 65.9 |
| Msa0561870 | MtrunA17_Chr5g0411341 | 29.630 | 189 | 117 | 5 | 293 | 471 | 494 | 676 | 6.90e-11 | 64.7 |
| Msa0561870 | MtrunA17_Chr8g0346151 | 30.968 | 155 | 93 | 6 | 293 | 443 | 280 | 424 | 7.58e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561870 | AT2G31210.1 | 36.047 | 516 | 197 | 12 | 11 | 483 | 1 | 426 | 3.40e-90 | 282 |
| Msa0561870 | AT2G31220.1 | 36.257 | 513 | 209 | 15 | 16 | 481 | 2 | 443 | 3.55e-82 | 262 |
| Msa0561870 | AT2G31220.2 | 36.257 | 513 | 209 | 15 | 16 | 481 | 13 | 454 | 4.28e-82 | 262 |
| Msa0561870 | AT1G06170.2 | 37.832 | 489 | 199 | 17 | 11 | 480 | 6 | 408 | 5.54e-82 | 260 |
| Msa0561870 | AT1G06170.1 | 37.832 | 489 | 199 | 17 | 11 | 480 | 6 | 408 | 5.54e-82 | 260 |
| Msa0561870 | AT2G31215.1 | 50.704 | 71 | 35 | 0 | 284 | 354 | 15 | 85 | 1.03e-14 | 71.2 |
| Msa0561870 | AT3G26744.1 | 26.738 | 187 | 126 | 4 | 291 | 471 | 306 | 487 | 3.13e-12 | 68.9 |
| Msa0561870 | AT3G26744.4 | 26.738 | 187 | 126 | 4 | 291 | 471 | 306 | 487 | 3.13e-12 | 68.9 |
| Msa0561870 | AT3G26744.2 | 26.738 | 187 | 126 | 4 | 291 | 471 | 306 | 487 | 3.13e-12 | 68.9 |
| Msa0561870 | AT3G26744.6 | 27.976 | 168 | 111 | 3 | 291 | 453 | 306 | 468 | 4.16e-12 | 68.6 |
| Msa0561870 | AT1G32640.1 | 29.592 | 196 | 102 | 7 | 261 | 437 | 410 | 588 | 4.47e-12 | 68.9 |
| Msa0561870 | AT1G12860.2 | 27.439 | 164 | 113 | 3 | 291 | 453 | 266 | 424 | 5.89e-12 | 67.8 |
| Msa0561870 | AT3G24140.1 | 25.000 | 204 | 130 | 5 | 293 | 477 | 199 | 398 | 6.64e-12 | 67.8 |
| Msa0561870 | AT3G24140.2 | 25.000 | 204 | 130 | 5 | 293 | 477 | 199 | 398 | 8.35e-12 | 67.4 |
| Msa0561870 | AT5G46760.1 | 34.459 | 148 | 85 | 4 | 293 | 437 | 416 | 554 | 2.03e-11 | 66.6 |
| Msa0561870 | AT1G12860.1 | 29.054 | 148 | 99 | 3 | 291 | 437 | 266 | 408 | 2.16e-11 | 66.2 |
| Msa0561870 | AT4G17880.1 | 32.215 | 149 | 83 | 5 | 293 | 437 | 417 | 551 | 9.44e-11 | 64.7 |
Find 137 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCATTGAATTATGAAAAT+TGG | 0.123720 | 4_1:-61538990 | None:intergenic |
| GATGGAGGGAGATGGGGATA+TGG | 0.225091 | 4_1:+61539201 | Msa0561870:CDS |
| GACATCAACCTCACTGTCTT+TGG | 0.255758 | 4_1:-61539830 | None:intergenic |
| GTTGTTTGTGTTGTTATCAT+TGG | 0.285682 | 4_1:-61538504 | None:intergenic |
| GGACCCTAGTGTTCAGGATA+TGG | 0.288747 | 4_1:+61538748 | Msa0561870:CDS |
| CTGTTTACCTTGGTGGGACT+TGG | 0.305763 | 4_1:-61539358 | None:intergenic |
| GCTGTTTGTGTCCAAGGTTT+TGG | 0.309859 | 4_1:+61539912 | Msa0561870:CDS |
| GTCATTGAATTATGAAAATT+GGG | 0.338556 | 4_1:-61538989 | None:intergenic |
| AGTGAATGAACTGAAATTAT+TGG | 0.342875 | 4_1:+61539675 | Msa0561870:CDS |
| GAGGTTCTTATACTTCCATC+TGG | 0.345071 | 4_1:-61539790 | None:intergenic |
| AGGGATTGTAGCTTTGGTTA+TGG | 0.348857 | 4_1:-61538841 | None:intergenic |
| TTGGAACTTCACCATGTTGC+AGG | 0.353487 | 4_1:+61539946 | Msa0561870:CDS |
| CAGATAGTTGGTGATGTTCT+TGG | 0.359747 | 4_1:-61538784 | None:intergenic |
| CAAAACATGCATGAACAAAA+TGG | 0.364773 | 4_1:+61538437 | Msa0561870:CDS |
| AGCTGTAACATAAAGCCTTT+TGG | 0.367904 | 4_1:+61539763 | Msa0561870:CDS |
| CTCCACAGCCTCCAGCTCTC+AGG | 0.376170 | 4_1:+61539098 | Msa0561870:CDS |
| ATTGAACAACAACAAAATCT+TGG | 0.381255 | 4_1:+61538653 | Msa0561870:CDS |
| ATGGAGGGAGATGGGGATAT+GGG | 0.387229 | 4_1:+61539202 | Msa0561870:CDS |
| GTGATGAGATGGAGGGAGAT+GGG | 0.388952 | 4_1:+61539194 | Msa0561870:CDS |
| TGGGAGTGCTGGAATTCAAT+AGG | 0.389828 | 4_1:+61539221 | Msa0561870:CDS |
| ATGGTTATCCATGTTGTTGT+AGG | 0.394415 | 4_1:-61538693 | None:intergenic |
| TGGTCGAGGGATTGTAGCTT+TGG | 0.400036 | 4_1:-61538847 | None:intergenic |
| AATTGGGTGGATTCTGAGTT+GGG | 0.404029 | 4_1:-61538973 | None:intergenic |
| GATGTTTCCACTTATACAAA+TGG | 0.405425 | 4_1:+61538608 | Msa0561870:CDS |
| CAACAGGGTGATTGATGTTA+TGG | 0.412367 | 4_1:+61540149 | Msa0561870:CDS |
| TTTCTTGGAGACCTTCCAAT+AGG | 0.414923 | 4_1:+61539013 | Msa0561870:CDS |
| CAAAATCTTGGTTTGAACAT+AGG | 0.414981 | 4_1:+61538665 | Msa0561870:CDS |
| TTTCTCAGTTGCAAAATGTT+TGG | 0.419556 | 4_1:-61539284 | None:intergenic |
| TTGTTTGTGTTGTTATCATT+GGG | 0.420602 | 4_1:-61538503 | None:intergenic |
| TTGCTTGCTGTTTGTGTCCA+AGG | 0.421896 | 4_1:+61539906 | Msa0561870:CDS |
| AAAATCTTGGTTTGAACATA+GGG | 0.427616 | 4_1:+61538666 | Msa0561870:CDS |
| TCCCTGAGAGCTGGAGGCTG+TGG | 0.430359 | 4_1:-61539100 | None:intergenic |
| ACACCTTCATCCATTGTGTT+GGG | 0.431032 | 4_1:-61538470 | None:intergenic |
| CAACAACATGGATAACCATT+TGG | 0.435263 | 4_1:+61538697 | Msa0561870:CDS |
| GAGTTGGGACCCTAGTGTTC+AGG | 0.436779 | 4_1:+61538742 | Msa0561870:CDS |
| GATATTGTTGTTCAGATAGT+TGG | 0.438953 | 4_1:-61538796 | None:intergenic |
| GGTGATGAGATGGAGGGAGA+TGG | 0.442415 | 4_1:+61539193 | Msa0561870:CDS |
| ATGCAAGTGCTATAGCCAAC+AGG | 0.446313 | 4_1:+61540133 | Msa0561870:CDS |
| GTGTTGTCTGATGATCCTAT+TGG | 0.454473 | 4_1:-61539028 | None:intergenic |
| AGTGAATCCATTTGTATAAG+TGG | 0.457197 | 4_1:-61538615 | None:intergenic |
| AGATGGGGATATGGGAGTGC+TGG | 0.457752 | 4_1:+61539210 | Msa0561870:CDS |
| ATGCCAACCAACTCGAGAAA+TGG | 0.461019 | 4_1:+61539154 | Msa0561870:CDS |
| ATAGCAATGAGTTCAGGTTC+AGG | 0.465445 | 4_1:+61538407 | None:intergenic |
| TTATTGCTGTTTACCTTGGT+GGG | 0.467259 | 4_1:-61539364 | None:intergenic |
| AACACCTTCATCCATTGTGT+TGG | 0.467861 | 4_1:-61538471 | None:intergenic |
| CAAAGAAGAGAGCAATTGAA+TGG | 0.475530 | 4_1:+61539307 | Msa0561870:CDS |
| TAACATCATCATCGATAATC+CGG | 0.477440 | 4_1:-61539852 | None:intergenic |
| GATACACTTCTTGTACCAAA+TGG | 0.479122 | 4_1:-61538712 | None:intergenic |
| CGGTGGAGGTGATGAGATGG+AGG | 0.480339 | 4_1:+61539186 | Msa0561870:CDS |
| GGAAGGTTCAAAGGATATAG+AGG | 0.481991 | 4_1:-61539076 | None:intergenic |
| CAAACTGTTTCAGAGGAAGA+AGG | 0.489618 | 4_1:+61539879 | Msa0561870:CDS |
| TGTTTACCTTGGTGGGACTT+GGG | 0.491389 | 4_1:-61539357 | None:intergenic |
| CTTCCATCTGGGTCACCAAA+AGG | 0.496925 | 4_1:-61539778 | None:intergenic |
| GCTTCTGTTGGCAAAGGAAG+AGG | 0.497466 | 4_1:+61539250 | Msa0561870:CDS |
| AAGAGAACCATTTCTCGAGT+TGG | 0.498637 | 4_1:-61539161 | None:intergenic |
| GGGAGTGCTGGAATTCAATA+GGG | 0.499086 | 4_1:+61539222 | Msa0561870:CDS |
| TTTATTGCTGTTTACCTTGG+TGG | 0.500865 | 4_1:-61539365 | None:intergenic |
| AGTTGGGTTTGTCATGCAAA+TGG | 0.506829 | 4_1:-61538957 | None:intergenic |
| TTGAGAAGGTTAAGGACATC+CGG | 0.515412 | 4_1:-61538893 | None:intergenic |
| AGACAAATAGCAATGAGTTC+AGG | 0.516206 | 4_1:+61538401 | None:intergenic |
| CTGAGAGCTGGAGGCTGTGG+AGG | 0.518825 | 4_1:-61539097 | None:intergenic |
| AGTGTATCAGAACTCGAGTT+GGG | 0.519237 | 4_1:+61538727 | Msa0561870:CDS |
| AGCATCTAGGTAAGTTGAGA+AGG | 0.519406 | 4_1:-61538907 | None:intergenic |
| GGAGAAGAAAAGACATGGGA+GGG | 0.519783 | 4_1:+61539699 | Msa0561870:CDS |
| GACTACAGCCTACTTGTATG+TGG | 0.520235 | 4_1:-61540195 | None:intergenic |
| TCACTGATGCAGGTAAATGA+AGG | 0.521271 | 4_1:+61540099 | Msa0561870:intron |
| TCCACAGCCTCCAGCTCTCA+GGG | 0.522645 | 4_1:+61539099 | Msa0561870:CDS |
| AGACCCTCATTACCCTTCAC+CGG | 0.523695 | 4_1:+61538874 | Msa0561870:CDS |
| TAGTTTCTTGTTCAATAGCA+AGG | 0.524699 | 4_1:+61539990 | Msa0561870:CDS |
| TGATGAGATGGAGGGAGATG+GGG | 0.524823 | 4_1:+61539195 | Msa0561870:CDS |
| GAGCTGGAGGCTGTGGAGGA+AGG | 0.524927 | 4_1:-61539093 | None:intergenic |
| AATAGGGTCACTGCTTCTGT+TGG | 0.528001 | 4_1:+61539238 | Msa0561870:CDS |
| TGAAACAATTCCCTGAGAGC+TGG | 0.529234 | 4_1:-61539109 | None:intergenic |
| GAATTTCAAGCCTTCTGTAG+AGG | 0.532912 | 4_1:+61538544 | Msa0561870:CDS |
| AAATTGGGTGGATTCTGAGT+TGG | 0.535004 | 4_1:-61538974 | None:intergenic |
| CTGAAGTTCATCCAAAACCT+TGG | 0.538751 | 4_1:-61539923 | None:intergenic |
| GGCTGTGGAGGAAGGTTCAA+AGG | 0.549237 | 4_1:-61539085 | None:intergenic |
| TAGGTAAGTTGAGAAGGTTA+AGG | 0.550958 | 4_1:-61538901 | None:intergenic |
| ATGAGGGTCTAGAATGGTCG+AGG | 0.552417 | 4_1:-61538861 | None:intergenic |
| ACATCCGGTGAAGGGTAATG+AGG | 0.553656 | 4_1:-61538878 | None:intergenic |
| GATCCCAACACAATGGATGA+AGG | 0.553830 | 4_1:+61538467 | Msa0561870:CDS |
| GAACCATTTCTCGAGTTGGT+TGG | 0.554382 | 4_1:-61539157 | None:intergenic |
| TTTGTCATGCAAATGGTGGA+TGG | 0.555450 | 4_1:-61538950 | None:intergenic |
| TGGAAAGTACAAAATCTTGA+GGG | 0.560743 | 4_1:+61539327 | Msa0561870:CDS |
| AGGTTAAGGACATCCGGTGA+AGG | 0.563045 | 4_1:-61538887 | None:intergenic |
| TAATCCATATCCTGAACACT+AGG | 0.565325 | 4_1:-61538752 | None:intergenic |
| AGGTTCTTATACTTCCATCT+GGG | 0.566449 | 4_1:-61539789 | None:intergenic |
| AAGACAGTGAGGTTGATGTC+CGG | 0.567804 | 4_1:+61539833 | Msa0561870:CDS |
| ATGGAAAGTACAAAATCTTG+AGG | 0.570741 | 4_1:+61539326 | Msa0561870:CDS |
| TTACAATCAAACTGTTTCAG+AGG | 0.573969 | 4_1:+61539872 | Msa0561870:CDS |
| ATTGAATTATGAAAATTGGG+TGG | 0.575295 | 4_1:-61538986 | None:intergenic |
| AGCAAAGATGAAGAGCATCT+AGG | 0.580041 | 4_1:-61538920 | None:intergenic |
| GTCACTGCTTCTGTTGGCAA+AGG | 0.580434 | 4_1:+61539244 | Msa0561870:CDS |
| TTTCGGTGGAGGTGATGAGA+TGG | 0.581094 | 4_1:+61539183 | Msa0561870:CDS |
| ACTGATAGAGCATCAGTGGT+TGG | 0.582304 | 4_1:+61539616 | Msa0561870:CDS |
| AACAATTCCCTGAGAGCTGG+AGG | 0.583698 | 4_1:-61539106 | None:intergenic |
| ATGGACACACAATATGCGGC+AGG | 0.587315 | 4_1:+61540168 | Msa0561870:CDS |
| TGGAGAAGAAAAGACATGGG+AGG | 0.590953 | 4_1:+61539698 | Msa0561870:CDS |
| AGGGTAATGAGGGTCTAGAA+TGG | 0.594794 | 4_1:-61538867 | None:intergenic |
| CAGGTCTTCCACATACAAGT+AGG | 0.601555 | 4_1:+61540187 | Msa0561870:CDS |
| GAATGAACTGAAATTATTGG+TGG | 0.601922 | 4_1:+61539678 | Msa0561870:CDS |
| CATGTTGCAGGTGGACATGT+TGG | 0.603051 | 4_1:+61539958 | Msa0561870:CDS |
| AAGTGTATCAGAACTCGAGT+TGG | 0.603471 | 4_1:+61538726 | Msa0561870:CDS |
| TTGTTCAATGTCTACTGATG+AGG | 0.603690 | 4_1:-61538639 | None:intergenic |
| GGATTTCCTCTGCAGCCATG+AGG | 0.604351 | 4_1:-61539809 | None:intergenic |
| GAACTTCACCATGTTGCAGG+TGG | 0.605562 | 4_1:+61539949 | Msa0561870:CDS |
| TATAAGTGGAAACATCATCA+AGG | 0.606570 | 4_1:-61538601 | None:intergenic |
| GGTTAAGGACATCCGGTGAA+GGG | 0.607008 | 4_1:-61538886 | None:intergenic |
| TAAGAACCTCATGGCTGCAG+AGG | 0.607611 | 4_1:+61539803 | Msa0561870:CDS |
| CATAACATCAATCACCCTGT+TGG | 0.611438 | 4_1:-61540148 | None:intergenic |
| CAACATGTCCACCTGCAACA+TGG | 0.611970 | 4_1:-61539957 | None:intergenic |
| CATCCGGTGAAGGGTAATGA+GGG | 0.612093 | 4_1:-61538877 | None:intergenic |
| AGACAACACAAGCGGATCAT+CGG | 0.616516 | 4_1:+61539042 | Msa0561870:CDS |
| TGGGTTTGTCATGCAAATGG+TGG | 0.620066 | 4_1:-61538954 | None:intergenic |
| GCAGACTGATAGAGCATCAG+TGG | 0.620695 | 4_1:+61539612 | Msa0561870:intron |
| TGTTCAATGTCTACTGATGA+GGG | 0.621545 | 4_1:-61538638 | None:intergenic |
| TTGGTGGAGAAGAAAAGACA+TGG | 0.622445 | 4_1:+61539694 | Msa0561870:CDS |
| AAGGCTTGAAATTCTCGTCA+AGG | 0.622448 | 4_1:-61538535 | None:intergenic |
| TAAGGTAGTTCCTCTACAGA+AGG | 0.625311 | 4_1:-61538554 | None:intergenic |
| TGGTGGAGAAGAAAAGACAT+GGG | 0.628796 | 4_1:+61539695 | Msa0561870:CDS |
| TGTCTGATGATCCTATTGGA+AGG | 0.634988 | 4_1:-61539024 | None:intergenic |
| GGTGGAGGTGATGAGATGGA+GGG | 0.644636 | 4_1:+61539187 | Msa0561870:CDS |
| TGCAAGTGCTATAGCCAACA+GGG | 0.647996 | 4_1:+61540134 | Msa0561870:CDS |
| TCTGTTGGCAAAGGAAGAGG+AGG | 0.650064 | 4_1:+61539253 | Msa0561870:CDS |
| GAAGGTTCAAAGGATATAGA+GGG | 0.652826 | 4_1:-61539075 | None:intergenic |
| ATGGAAGTATAAGAACCTCA+TGG | 0.653640 | 4_1:+61539794 | Msa0561870:CDS |
| AATCCATATCCTGAACACTA+GGG | 0.654503 | 4_1:-61538751 | None:intergenic |
| ACAATATCAACAATTTATCG+AGG | 0.665388 | 4_1:+61538811 | Msa0561870:CDS |
| TTGTTTCAATCTCTGCCTCG+AGG | 0.665573 | 4_1:+61539124 | Msa0561870:CDS |
| GGATCATCAGACAACACAAG+CGG | 0.678009 | 4_1:+61539034 | Msa0561870:CDS |
| AGGGAATACCTACAACAACA+TGG | 0.679432 | 4_1:+61538685 | Msa0561870:CDS |
| TTGCTTTGATCCCAACACAA+TGG | 0.687353 | 4_1:+61538460 | Msa0561870:CDS |
| TCTCATCCCAAGTCCCACCA+AGG | 0.687512 | 4_1:+61539351 | Msa0561870:CDS |
| TGTTATGGACACACAATATG+CGG | 0.695276 | 4_1:+61540164 | Msa0561870:CDS |
| TGAGGGTCTAGAATGGTCGA+GGG | 0.709529 | 4_1:-61538860 | None:intergenic |
| GAGGAAATCCAAAGACAGTG+AGG | 0.714492 | 4_1:+61539822 | Msa0561870:CDS |
| GTTGGCATGCTATAGCCTCG+AGG | 0.726151 | 4_1:-61539139 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATAGATAAAATTATACA+TGG | - | chr4_1:61539411-61539430 | None:intergenic | 15.0% |
| !! | TGGTTATATATTAAACTATA+AGG | + | chr4_1:61540072-61540091 | Msa0561870:intron | 15.0% |
| !! | TTCATAGATAAAATTATACA+TGG | - | chr4_1:61539411-61539430 | None:intergenic | 15.0% |
| !! | TGGTTATATATTAAACTATA+AGG | + | chr4_1:61540072-61540091 | Msa0561870:intron | 15.0% |
| !! | GTCATTGAATTATGAAAATT+GGG | - | chr4_1:61538992-61539011 | None:intergenic | 20.0% |
| !! | AGTCATTGAATTATGAAAAT+TGG | - | chr4_1:61538993-61539012 | None:intergenic | 20.0% |
| !!! | TTGAGTCTTGAATTATTTTA+AGG | + | chr4_1:61539471-61539490 | Msa0561870:intron | 20.0% |
| !!! | CTATTTGTTACAATGATTAA+CGG | + | chr4_1:61539573-61539592 | Msa0561870:intron | 20.0% |
| !! | TAGAATCATTACATTTGATT+TGG | + | chr4_1:61540052-61540071 | Msa0561870:intron | 20.0% |
| !! | GTCATTGAATTATGAAAATT+GGG | - | chr4_1:61538992-61539011 | None:intergenic | 20.0% |
| !! | AGTCATTGAATTATGAAAAT+TGG | - | chr4_1:61538993-61539012 | None:intergenic | 20.0% |
| !!! | TTGAGTCTTGAATTATTTTA+AGG | + | chr4_1:61539471-61539490 | Msa0561870:intron | 20.0% |
| !!! | CTATTTGTTACAATGATTAA+CGG | + | chr4_1:61539573-61539592 | Msa0561870:intron | 20.0% |
| !! | TAGAATCATTACATTTGATT+TGG | + | chr4_1:61540052-61540071 | Msa0561870:intron | 20.0% |
| !! | TTGTTTGTGTTGTTATCATT+GGG | - | chr4_1:61538506-61538525 | None:intergenic | 25.0% |
| ! | ATTGAACAACAACAAAATCT+TGG | + | chr4_1:61538653-61538672 | Msa0561870:CDS | 25.0% |
| !! | AAAATCTTGGTTTGAACATA+GGG | + | chr4_1:61538666-61538685 | Msa0561870:CDS | 25.0% |
| ! | ACAATATCAACAATTTATCG+AGG | + | chr4_1:61538811-61538830 | Msa0561870:CDS | 25.0% |
| ! | ATTGAATTATGAAAATTGGG+TGG | - | chr4_1:61538989-61539008 | None:intergenic | 25.0% |
| !! | CATAATTCAATGACTTTTCT+TGG | + | chr4_1:61538998-61539017 | Msa0561870:CDS | 25.0% |
| ! | AAGACTCAACATATATCAAT+TGG | - | chr4_1:61539460-61539479 | None:intergenic | 25.0% |
| !!! | AATATTGTTGTGTCACTTAT+TGG | + | chr4_1:61539519-61539538 | Msa0561870:intron | 25.0% |
| ! | TAGAGATTCAAATTGTGAAA+CGG | - | chr4_1:61539556-61539575 | None:intergenic | 25.0% |
| ! | AGTGAATGAACTGAAATTAT+TGG | + | chr4_1:61539675-61539694 | Msa0561870:CDS | 25.0% |
| !! | TTGTTTGTGTTGTTATCATT+GGG | - | chr4_1:61538506-61538525 | None:intergenic | 25.0% |
| ! | ATTGAACAACAACAAAATCT+TGG | + | chr4_1:61538653-61538672 | Msa0561870:CDS | 25.0% |
| !! | AAAATCTTGGTTTGAACATA+GGG | + | chr4_1:61538666-61538685 | Msa0561870:CDS | 25.0% |
| ! | ACAATATCAACAATTTATCG+AGG | + | chr4_1:61538811-61538830 | Msa0561870:CDS | 25.0% |
| ! | ATTGAATTATGAAAATTGGG+TGG | - | chr4_1:61538989-61539008 | None:intergenic | 25.0% |
| !! | CATAATTCAATGACTTTTCT+TGG | + | chr4_1:61538998-61539017 | Msa0561870:CDS | 25.0% |
| ! | AAGACTCAACATATATCAAT+TGG | - | chr4_1:61539460-61539479 | None:intergenic | 25.0% |
| !!! | AATATTGTTGTGTCACTTAT+TGG | + | chr4_1:61539519-61539538 | Msa0561870:intron | 25.0% |
| ! | TAGAGATTCAAATTGTGAAA+CGG | - | chr4_1:61539556-61539575 | None:intergenic | 25.0% |
| ! | AGTGAATGAACTGAAATTAT+TGG | + | chr4_1:61539675-61539694 | Msa0561870:CDS | 25.0% |
| CAAAACATGCATGAACAAAA+TGG | + | chr4_1:61538437-61538456 | Msa0561870:CDS | 30.0% | |
| ! | GTTGTTTGTGTTGTTATCAT+TGG | - | chr4_1:61538507-61538526 | None:intergenic | 30.0% |
| !! | GAATTTTGATGATTGTGGTA+AGG | - | chr4_1:61538575-61538594 | None:intergenic | 30.0% |
| !! | GTTGTGAATTTTGATGATTG+TGG | - | chr4_1:61538580-61538599 | None:intergenic | 30.0% |
| TATAAGTGGAAACATCATCA+AGG | - | chr4_1:61538604-61538623 | None:intergenic | 30.0% | |
| GATGTTTCCACTTATACAAA+TGG | + | chr4_1:61538608-61538627 | Msa0561870:CDS | 30.0% | |
| AGTGAATCCATTTGTATAAG+TGG | - | chr4_1:61538618-61538637 | None:intergenic | 30.0% | |
| ! | CAAAATCTTGGTTTGAACAT+AGG | + | chr4_1:61538665-61538684 | Msa0561870:CDS | 30.0% |
| ! | GATATTGTTGTTCAGATAGT+TGG | - | chr4_1:61538799-61538818 | None:intergenic | 30.0% |
| TTTCTCAGTTGCAAAATGTT+TGG | - | chr4_1:61539287-61539306 | None:intergenic | 30.0% | |
| ! | ATGGAAAGTACAAAATCTTG+AGG | + | chr4_1:61539326-61539345 | Msa0561870:CDS | 30.0% |
| ! | TGGAAAGTACAAAATCTTGA+GGG | + | chr4_1:61539327-61539346 | Msa0561870:CDS | 30.0% |
| !! | ATGTTTATTGCTGTTTACCT+TGG | - | chr4_1:61539371-61539390 | None:intergenic | 30.0% |
| GAATGAACTGAAATTATTGG+TGG | + | chr4_1:61539678-61539697 | Msa0561870:CDS | 30.0% | |
| TAACATCATCATCGATAATC+CGG | - | chr4_1:61539855-61539874 | None:intergenic | 30.0% | |
| TTACAATCAAACTGTTTCAG+AGG | + | chr4_1:61539872-61539891 | Msa0561870:CDS | 30.0% | |
| TAGTTTCTTGTTCAATAGCA+AGG | + | chr4_1:61539990-61540009 | Msa0561870:CDS | 30.0% | |
| CAAAACATGCATGAACAAAA+TGG | + | chr4_1:61538437-61538456 | Msa0561870:CDS | 30.0% | |
| ! | GTTGTTTGTGTTGTTATCAT+TGG | - | chr4_1:61538507-61538526 | None:intergenic | 30.0% |
| !! | GAATTTTGATGATTGTGGTA+AGG | - | chr4_1:61538575-61538594 | None:intergenic | 30.0% |
| !! | GTTGTGAATTTTGATGATTG+TGG | - | chr4_1:61538580-61538599 | None:intergenic | 30.0% |
| TATAAGTGGAAACATCATCA+AGG | - | chr4_1:61538604-61538623 | None:intergenic | 30.0% | |
| GATGTTTCCACTTATACAAA+TGG | + | chr4_1:61538608-61538627 | Msa0561870:CDS | 30.0% | |
| AGTGAATCCATTTGTATAAG+TGG | - | chr4_1:61538618-61538637 | None:intergenic | 30.0% | |
| ! | CAAAATCTTGGTTTGAACAT+AGG | + | chr4_1:61538665-61538684 | Msa0561870:CDS | 30.0% |
| ! | GATATTGTTGTTCAGATAGT+TGG | - | chr4_1:61538799-61538818 | None:intergenic | 30.0% |
| TTTCTCAGTTGCAAAATGTT+TGG | - | chr4_1:61539287-61539306 | None:intergenic | 30.0% | |
| ! | ATGGAAAGTACAAAATCTTG+AGG | + | chr4_1:61539326-61539345 | Msa0561870:CDS | 30.0% |
| ! | TGGAAAGTACAAAATCTTGA+GGG | + | chr4_1:61539327-61539346 | Msa0561870:CDS | 30.0% |
| !! | ATGTTTATTGCTGTTTACCT+TGG | - | chr4_1:61539371-61539390 | None:intergenic | 30.0% |
| GAATGAACTGAAATTATTGG+TGG | + | chr4_1:61539678-61539697 | Msa0561870:CDS | 30.0% | |
| TAACATCATCATCGATAATC+CGG | - | chr4_1:61539855-61539874 | None:intergenic | 30.0% | |
| TTACAATCAAACTGTTTCAG+AGG | + | chr4_1:61539872-61539891 | Msa0561870:CDS | 30.0% | |
| TAGTTTCTTGTTCAATAGCA+AGG | + | chr4_1:61539990-61540009 | Msa0561870:CDS | 30.0% | |
| TGTTCAATGTCTACTGATGA+GGG | - | chr4_1:61538641-61538660 | None:intergenic | 35.0% | |
| TTGTTCAATGTCTACTGATG+AGG | - | chr4_1:61538642-61538661 | None:intergenic | 35.0% | |
| ATGGTTATCCATGTTGTTGT+AGG | - | chr4_1:61538696-61538715 | None:intergenic | 35.0% | |
| CAACAACATGGATAACCATT+TGG | + | chr4_1:61538697-61538716 | Msa0561870:CDS | 35.0% | |
| GATACACTTCTTGTACCAAA+TGG | - | chr4_1:61538715-61538734 | None:intergenic | 35.0% | |
| AATCCATATCCTGAACACTA+GGG | - | chr4_1:61538754-61538773 | None:intergenic | 35.0% | |
| TAATCCATATCCTGAACACT+AGG | - | chr4_1:61538755-61538774 | None:intergenic | 35.0% | |
| ! | TAGGTAAGTTGAGAAGGTTA+AGG | - | chr4_1:61538904-61538923 | None:intergenic | 35.0% |
| GAAGGTTCAAAGGATATAGA+GGG | - | chr4_1:61539078-61539097 | None:intergenic | 35.0% | |
| ! | TCGAGAAATGGTTCTCTTTT+CGG | + | chr4_1:61539166-61539185 | Msa0561870:CDS | 35.0% |
| CAAAGAAGAGAGCAATTGAA+TGG | + | chr4_1:61539307-61539326 | Msa0561870:CDS | 35.0% | |
| !! | TTATTGCTGTTTACCTTGGT+GGG | - | chr4_1:61539367-61539386 | None:intergenic | 35.0% |
| !! | TTTATTGCTGTTTACCTTGG+TGG | - | chr4_1:61539368-61539387 | None:intergenic | 35.0% |
| ATCAATTGGCAACAGAAAAG+TGG | - | chr4_1:61539446-61539465 | None:intergenic | 35.0% | |
| ! | CAATGATTAACGGTCAGTTT+TGG | + | chr4_1:61539583-61539602 | Msa0561870:intron | 35.0% |
| ! | AGCTGTAACATAAAGCCTTT+TGG | + | chr4_1:61539763-61539782 | Msa0561870:CDS | 35.0% |
| AGGTTCTTATACTTCCATCT+GGG | - | chr4_1:61539792-61539811 | None:intergenic | 35.0% | |
| ! | ATGGAAGTATAAGAACCTCA+TGG | + | chr4_1:61539794-61539813 | Msa0561870:CDS | 35.0% |
| TTCTTGTTCAATAGCAAGGT+TGG | + | chr4_1:61539994-61540013 | Msa0561870:intron | 35.0% | |
| TGTTATGGACACACAATATG+CGG | + | chr4_1:61540164-61540183 | Msa0561870:CDS | 35.0% | |
| TGTTCAATGTCTACTGATGA+GGG | - | chr4_1:61538641-61538660 | None:intergenic | 35.0% | |
| TTGTTCAATGTCTACTGATG+AGG | - | chr4_1:61538642-61538661 | None:intergenic | 35.0% | |
| ATGGTTATCCATGTTGTTGT+AGG | - | chr4_1:61538696-61538715 | None:intergenic | 35.0% | |
| CAACAACATGGATAACCATT+TGG | + | chr4_1:61538697-61538716 | Msa0561870:CDS | 35.0% | |
| GATACACTTCTTGTACCAAA+TGG | - | chr4_1:61538715-61538734 | None:intergenic | 35.0% | |
| AATCCATATCCTGAACACTA+GGG | - | chr4_1:61538754-61538773 | None:intergenic | 35.0% | |
| TAATCCATATCCTGAACACT+AGG | - | chr4_1:61538755-61538774 | None:intergenic | 35.0% | |
| ! | TAGGTAAGTTGAGAAGGTTA+AGG | - | chr4_1:61538904-61538923 | None:intergenic | 35.0% |
| GAAGGTTCAAAGGATATAGA+GGG | - | chr4_1:61539078-61539097 | None:intergenic | 35.0% | |
| ! | TCGAGAAATGGTTCTCTTTT+CGG | + | chr4_1:61539166-61539185 | Msa0561870:CDS | 35.0% |
| CAAAGAAGAGAGCAATTGAA+TGG | + | chr4_1:61539307-61539326 | Msa0561870:CDS | 35.0% | |
| !! | TTATTGCTGTTTACCTTGGT+GGG | - | chr4_1:61539367-61539386 | None:intergenic | 35.0% |
| !! | TTTATTGCTGTTTACCTTGG+TGG | - | chr4_1:61539368-61539387 | None:intergenic | 35.0% |
| ATCAATTGGCAACAGAAAAG+TGG | - | chr4_1:61539446-61539465 | None:intergenic | 35.0% | |
| ! | CAATGATTAACGGTCAGTTT+TGG | + | chr4_1:61539583-61539602 | Msa0561870:intron | 35.0% |
| ! | AGCTGTAACATAAAGCCTTT+TGG | + | chr4_1:61539763-61539782 | Msa0561870:CDS | 35.0% |
| AGGTTCTTATACTTCCATCT+GGG | - | chr4_1:61539792-61539811 | None:intergenic | 35.0% | |
| ! | ATGGAAGTATAAGAACCTCA+TGG | + | chr4_1:61539794-61539813 | Msa0561870:CDS | 35.0% |
| TTCTTGTTCAATAGCAAGGT+TGG | + | chr4_1:61539994-61540013 | Msa0561870:intron | 35.0% | |
| TGTTATGGACACACAATATG+CGG | + | chr4_1:61540164-61540183 | Msa0561870:CDS | 35.0% | |
| TTGCTTTGATCCCAACACAA+TGG | + | chr4_1:61538460-61538479 | Msa0561870:CDS | 40.0% | |
| ACACCTTCATCCATTGTGTT+GGG | - | chr4_1:61538473-61538492 | None:intergenic | 40.0% | |
| AACACCTTCATCCATTGTGT+TGG | - | chr4_1:61538474-61538493 | None:intergenic | 40.0% | |
| AAGGCTTGAAATTCTCGTCA+AGG | - | chr4_1:61538538-61538557 | None:intergenic | 40.0% | |
| GAATTTCAAGCCTTCTGTAG+AGG | + | chr4_1:61538544-61538563 | Msa0561870:CDS | 40.0% | |
| TAAGGTAGTTCCTCTACAGA+AGG | - | chr4_1:61538557-61538576 | None:intergenic | 40.0% | |
| AGGGAATACCTACAACAACA+TGG | + | chr4_1:61538685-61538704 | Msa0561870:CDS | 40.0% | |
| AAGTGTATCAGAACTCGAGT+TGG | + | chr4_1:61538726-61538745 | Msa0561870:CDS | 40.0% | |
| AGTGTATCAGAACTCGAGTT+GGG | + | chr4_1:61538727-61538746 | Msa0561870:CDS | 40.0% | |
| !! | CAGATAGTTGGTGATGTTCT+TGG | - | chr4_1:61538787-61538806 | None:intergenic | 40.0% |
| !! | AGGGATTGTAGCTTTGGTTA+TGG | - | chr4_1:61538844-61538863 | None:intergenic | 40.0% |
| TTGAGAAGGTTAAGGACATC+CGG | - | chr4_1:61538896-61538915 | None:intergenic | 40.0% | |
| ! | AGCATCTAGGTAAGTTGAGA+AGG | - | chr4_1:61538910-61538929 | None:intergenic | 40.0% |
| !! | AGCAAAGATGAAGAGCATCT+AGG | - | chr4_1:61538923-61538942 | None:intergenic | 40.0% |
| ! | TTTGTCATGCAAATGGTGGA+TGG | - | chr4_1:61538953-61538972 | None:intergenic | 40.0% |
| AGTTGGGTTTGTCATGCAAA+TGG | - | chr4_1:61538960-61538979 | None:intergenic | 40.0% | |
| ! | AATTGGGTGGATTCTGAGTT+GGG | - | chr4_1:61538976-61538995 | None:intergenic | 40.0% |
| ! | AAATTGGGTGGATTCTGAGT+TGG | - | chr4_1:61538977-61538996 | None:intergenic | 40.0% |
| TTTCTTGGAGACCTTCCAAT+AGG | + | chr4_1:61539013-61539032 | Msa0561870:CDS | 40.0% | |
| TGTCTGATGATCCTATTGGA+AGG | - | chr4_1:61539027-61539046 | None:intergenic | 40.0% | |
| GTGTTGTCTGATGATCCTAT+TGG | - | chr4_1:61539031-61539050 | None:intergenic | 40.0% | |
| GGAAGGTTCAAAGGATATAG+AGG | - | chr4_1:61539079-61539098 | None:intergenic | 40.0% | |
| AAGAGAACCATTTCTCGAGT+TGG | - | chr4_1:61539164-61539183 | None:intergenic | 40.0% | |
| ! | AGAAATGGTTCTCTTTTCGG+TGG | + | chr4_1:61539169-61539188 | Msa0561870:CDS | 40.0% |
| TTGGTGGAGAAGAAAAGACA+TGG | + | chr4_1:61539694-61539713 | Msa0561870:CDS | 40.0% | |
| TGGTGGAGAAGAAAAGACAT+GGG | + | chr4_1:61539695-61539714 | Msa0561870:CDS | 40.0% | |
| GAGGTTCTTATACTTCCATC+TGG | - | chr4_1:61539793-61539812 | None:intergenic | 40.0% | |
| CAAACTGTTTCAGAGGAAGA+AGG | + | chr4_1:61539879-61539898 | Msa0561870:CDS | 40.0% | |
| CTGAAGTTCATCCAAAACCT+TGG | - | chr4_1:61539926-61539945 | None:intergenic | 40.0% | |
| !!! | GGTTTTGGATGAACTTCAGT+TGG | + | chr4_1:61539927-61539946 | Msa0561870:CDS | 40.0% |
| ! | ATAAGGTGTTTCACTGATGC+AGG | + | chr4_1:61540089-61540108 | Msa0561870:intron | 40.0% |
| TCACTGATGCAGGTAAATGA+AGG | + | chr4_1:61540099-61540118 | Msa0561870:intron | 40.0% | |
| CATAACATCAATCACCCTGT+TGG | - | chr4_1:61540151-61540170 | None:intergenic | 40.0% | |
| CAACAGGGTGATTGATGTTA+TGG | + | chr4_1:61540149-61540168 | Msa0561870:CDS | 40.0% | |
| TTGCTTTGATCCCAACACAA+TGG | + | chr4_1:61538460-61538479 | Msa0561870:CDS | 40.0% | |
| ACACCTTCATCCATTGTGTT+GGG | - | chr4_1:61538473-61538492 | None:intergenic | 40.0% | |
| AACACCTTCATCCATTGTGT+TGG | - | chr4_1:61538474-61538493 | None:intergenic | 40.0% | |
| AAGGCTTGAAATTCTCGTCA+AGG | - | chr4_1:61538538-61538557 | None:intergenic | 40.0% | |
| GAATTTCAAGCCTTCTGTAG+AGG | + | chr4_1:61538544-61538563 | Msa0561870:CDS | 40.0% | |
| TAAGGTAGTTCCTCTACAGA+AGG | - | chr4_1:61538557-61538576 | None:intergenic | 40.0% | |
| AGGGAATACCTACAACAACA+TGG | + | chr4_1:61538685-61538704 | Msa0561870:CDS | 40.0% | |
| AAGTGTATCAGAACTCGAGT+TGG | + | chr4_1:61538726-61538745 | Msa0561870:CDS | 40.0% | |
| AGTGTATCAGAACTCGAGTT+GGG | + | chr4_1:61538727-61538746 | Msa0561870:CDS | 40.0% | |
| !! | CAGATAGTTGGTGATGTTCT+TGG | - | chr4_1:61538787-61538806 | None:intergenic | 40.0% |
| !! | AGGGATTGTAGCTTTGGTTA+TGG | - | chr4_1:61538844-61538863 | None:intergenic | 40.0% |
| TTGAGAAGGTTAAGGACATC+CGG | - | chr4_1:61538896-61538915 | None:intergenic | 40.0% | |
| ! | AGCATCTAGGTAAGTTGAGA+AGG | - | chr4_1:61538910-61538929 | None:intergenic | 40.0% |
| !! | AGCAAAGATGAAGAGCATCT+AGG | - | chr4_1:61538923-61538942 | None:intergenic | 40.0% |
| ! | TTTGTCATGCAAATGGTGGA+TGG | - | chr4_1:61538953-61538972 | None:intergenic | 40.0% |
| AGTTGGGTTTGTCATGCAAA+TGG | - | chr4_1:61538960-61538979 | None:intergenic | 40.0% | |
| ! | AATTGGGTGGATTCTGAGTT+GGG | - | chr4_1:61538976-61538995 | None:intergenic | 40.0% |
| ! | AAATTGGGTGGATTCTGAGT+TGG | - | chr4_1:61538977-61538996 | None:intergenic | 40.0% |
| TTTCTTGGAGACCTTCCAAT+AGG | + | chr4_1:61539013-61539032 | Msa0561870:CDS | 40.0% | |
| TGTCTGATGATCCTATTGGA+AGG | - | chr4_1:61539027-61539046 | None:intergenic | 40.0% | |
| GTGTTGTCTGATGATCCTAT+TGG | - | chr4_1:61539031-61539050 | None:intergenic | 40.0% | |
| GGAAGGTTCAAAGGATATAG+AGG | - | chr4_1:61539079-61539098 | None:intergenic | 40.0% | |
| AAGAGAACCATTTCTCGAGT+TGG | - | chr4_1:61539164-61539183 | None:intergenic | 40.0% | |
| ! | AGAAATGGTTCTCTTTTCGG+TGG | + | chr4_1:61539169-61539188 | Msa0561870:CDS | 40.0% |
| TTGGTGGAGAAGAAAAGACA+TGG | + | chr4_1:61539694-61539713 | Msa0561870:CDS | 40.0% | |
| TGGTGGAGAAGAAAAGACAT+GGG | + | chr4_1:61539695-61539714 | Msa0561870:CDS | 40.0% | |
| GAGGTTCTTATACTTCCATC+TGG | - | chr4_1:61539793-61539812 | None:intergenic | 40.0% | |
| CAAACTGTTTCAGAGGAAGA+AGG | + | chr4_1:61539879-61539898 | Msa0561870:CDS | 40.0% | |
| CTGAAGTTCATCCAAAACCT+TGG | - | chr4_1:61539926-61539945 | None:intergenic | 40.0% | |
| !!! | GGTTTTGGATGAACTTCAGT+TGG | + | chr4_1:61539927-61539946 | Msa0561870:CDS | 40.0% |
| ! | ATAAGGTGTTTCACTGATGC+AGG | + | chr4_1:61540089-61540108 | Msa0561870:intron | 40.0% |
| TCACTGATGCAGGTAAATGA+AGG | + | chr4_1:61540099-61540118 | Msa0561870:intron | 40.0% | |
| CATAACATCAATCACCCTGT+TGG | - | chr4_1:61540151-61540170 | None:intergenic | 40.0% | |
| CAACAGGGTGATTGATGTTA+TGG | + | chr4_1:61540149-61540168 | Msa0561870:CDS | 40.0% | |
| GATCCCAACACAATGGATGA+AGG | + | chr4_1:61538467-61538486 | Msa0561870:CDS | 45.0% | |
| AGGGTAATGAGGGTCTAGAA+TGG | - | chr4_1:61538870-61538889 | None:intergenic | 45.0% | |
| TGGGTTTGTCATGCAAATGG+TGG | - | chr4_1:61538957-61538976 | None:intergenic | 45.0% | |
| GGATCATCAGACAACACAAG+CGG | + | chr4_1:61539034-61539053 | Msa0561870:CDS | 45.0% | |
| AGACAACACAAGCGGATCAT+CGG | + | chr4_1:61539042-61539061 | Msa0561870:CDS | 45.0% | |
| TGAAACAATTCCCTGAGAGC+TGG | - | chr4_1:61539112-61539131 | None:intergenic | 45.0% | |
| TTGTTTCAATCTCTGCCTCG+AGG | + | chr4_1:61539124-61539143 | Msa0561870:CDS | 45.0% | |
| ATGCCAACCAACTCGAGAAA+TGG | + | chr4_1:61539154-61539173 | Msa0561870:CDS | 45.0% | |
| !! | GAACCATTTCTCGAGTTGGT+TGG | - | chr4_1:61539160-61539179 | None:intergenic | 45.0% |
| ! | AATGGTTCTCTTTTCGGTGG+AGG | + | chr4_1:61539172-61539191 | Msa0561870:CDS | 45.0% |
| !! | TGGGAGTGCTGGAATTCAAT+AGG | + | chr4_1:61539221-61539240 | Msa0561870:CDS | 45.0% |
| !! | GGGAGTGCTGGAATTCAATA+GGG | + | chr4_1:61539222-61539241 | Msa0561870:CDS | 45.0% |
| AATAGGGTCACTGCTTCTGT+TGG | + | chr4_1:61539238-61539257 | Msa0561870:CDS | 45.0% | |
| TGTTTACCTTGGTGGGACTT+GGG | - | chr4_1:61539360-61539379 | None:intergenic | 45.0% | |
| ATTGGCAACAGAAAAGTGGC+TGG | - | chr4_1:61539442-61539461 | None:intergenic | 45.0% | |
| ! | ACTGATAGAGCATCAGTGGT+TGG | + | chr4_1:61539616-61539635 | Msa0561870:CDS | 45.0% |
| TGGAGAAGAAAAGACATGGG+AGG | + | chr4_1:61539698-61539717 | Msa0561870:CDS | 45.0% | |
| GGAGAAGAAAAGACATGGGA+GGG | + | chr4_1:61539699-61539718 | Msa0561870:CDS | 45.0% | |
| GAGGAAATCCAAAGACAGTG+AGG | + | chr4_1:61539822-61539841 | Msa0561870:CDS | 45.0% | |
| GACATCAACCTCACTGTCTT+TGG | - | chr4_1:61539833-61539852 | None:intergenic | 45.0% | |
| !! | AAGACAGTGAGGTTGATGTC+CGG | + | chr4_1:61539833-61539852 | Msa0561870:CDS | 45.0% |
| !! | TTGCTTGCTGTTTGTGTCCA+AGG | + | chr4_1:61539906-61539925 | Msa0561870:CDS | 45.0% |
| ! | GCTGTTTGTGTCCAAGGTTT+TGG | + | chr4_1:61539912-61539931 | Msa0561870:CDS | 45.0% |
| TTGGAACTTCACCATGTTGC+AGG | + | chr4_1:61539946-61539965 | Msa0561870:CDS | 45.0% | |
| ATGCAAGTGCTATAGCCAAC+AGG | + | chr4_1:61540133-61540152 | Msa0561870:CDS | 45.0% | |
| TGCAAGTGCTATAGCCAACA+GGG | + | chr4_1:61540134-61540153 | Msa0561870:CDS | 45.0% | |
| CAGGTCTTCCACATACAAGT+AGG | + | chr4_1:61540187-61540206 | Msa0561870:CDS | 45.0% | |
| GATCCCAACACAATGGATGA+AGG | + | chr4_1:61538467-61538486 | Msa0561870:CDS | 45.0% | |
| AGGGTAATGAGGGTCTAGAA+TGG | - | chr4_1:61538870-61538889 | None:intergenic | 45.0% | |
| TGGGTTTGTCATGCAAATGG+TGG | - | chr4_1:61538957-61538976 | None:intergenic | 45.0% | |
| GGATCATCAGACAACACAAG+CGG | + | chr4_1:61539034-61539053 | Msa0561870:CDS | 45.0% | |
| AGACAACACAAGCGGATCAT+CGG | + | chr4_1:61539042-61539061 | Msa0561870:CDS | 45.0% | |
| TGAAACAATTCCCTGAGAGC+TGG | - | chr4_1:61539112-61539131 | None:intergenic | 45.0% | |
| TTGTTTCAATCTCTGCCTCG+AGG | + | chr4_1:61539124-61539143 | Msa0561870:CDS | 45.0% | |
| ATGCCAACCAACTCGAGAAA+TGG | + | chr4_1:61539154-61539173 | Msa0561870:CDS | 45.0% | |
| !! | GAACCATTTCTCGAGTTGGT+TGG | - | chr4_1:61539160-61539179 | None:intergenic | 45.0% |
| ! | AATGGTTCTCTTTTCGGTGG+AGG | + | chr4_1:61539172-61539191 | Msa0561870:CDS | 45.0% |
| !! | TGGGAGTGCTGGAATTCAAT+AGG | + | chr4_1:61539221-61539240 | Msa0561870:CDS | 45.0% |
| !! | GGGAGTGCTGGAATTCAATA+GGG | + | chr4_1:61539222-61539241 | Msa0561870:CDS | 45.0% |
| AATAGGGTCACTGCTTCTGT+TGG | + | chr4_1:61539238-61539257 | Msa0561870:CDS | 45.0% | |
| TGTTTACCTTGGTGGGACTT+GGG | - | chr4_1:61539360-61539379 | None:intergenic | 45.0% | |
| ATTGGCAACAGAAAAGTGGC+TGG | - | chr4_1:61539442-61539461 | None:intergenic | 45.0% | |
| ! | ACTGATAGAGCATCAGTGGT+TGG | + | chr4_1:61539616-61539635 | Msa0561870:CDS | 45.0% |
| TGGAGAAGAAAAGACATGGG+AGG | + | chr4_1:61539698-61539717 | Msa0561870:CDS | 45.0% | |
| GGAGAAGAAAAGACATGGGA+GGG | + | chr4_1:61539699-61539718 | Msa0561870:CDS | 45.0% | |
| GAGGAAATCCAAAGACAGTG+AGG | + | chr4_1:61539822-61539841 | Msa0561870:CDS | 45.0% | |
| GACATCAACCTCACTGTCTT+TGG | - | chr4_1:61539833-61539852 | None:intergenic | 45.0% | |
| !! | AAGACAGTGAGGTTGATGTC+CGG | + | chr4_1:61539833-61539852 | Msa0561870:CDS | 45.0% |
| !! | TTGCTTGCTGTTTGTGTCCA+AGG | + | chr4_1:61539906-61539925 | Msa0561870:CDS | 45.0% |
| ! | GCTGTTTGTGTCCAAGGTTT+TGG | + | chr4_1:61539912-61539931 | Msa0561870:CDS | 45.0% |
| TTGGAACTTCACCATGTTGC+AGG | + | chr4_1:61539946-61539965 | Msa0561870:CDS | 45.0% | |
| ATGCAAGTGCTATAGCCAAC+AGG | + | chr4_1:61540133-61540152 | Msa0561870:CDS | 45.0% | |
| TGCAAGTGCTATAGCCAACA+GGG | + | chr4_1:61540134-61540153 | Msa0561870:CDS | 45.0% | |
| CAGGTCTTCCACATACAAGT+AGG | + | chr4_1:61540187-61540206 | Msa0561870:CDS | 45.0% | |
| GGACCCTAGTGTTCAGGATA+TGG | + | chr4_1:61538748-61538767 | Msa0561870:CDS | 50.0% | |
| TGGTCGAGGGATTGTAGCTT+TGG | - | chr4_1:61538850-61538869 | None:intergenic | 50.0% | |
| ! | TGAGGGTCTAGAATGGTCGA+GGG | - | chr4_1:61538863-61538882 | None:intergenic | 50.0% |
| ! | ATGAGGGTCTAGAATGGTCG+AGG | - | chr4_1:61538864-61538883 | None:intergenic | 50.0% |
| AGACCCTCATTACCCTTCAC+CGG | + | chr4_1:61538874-61538893 | Msa0561870:CDS | 50.0% | |
| CATCCGGTGAAGGGTAATGA+GGG | - | chr4_1:61538880-61538899 | None:intergenic | 50.0% | |
| ACATCCGGTGAAGGGTAATG+AGG | - | chr4_1:61538881-61538900 | None:intergenic | 50.0% | |
| GGTTAAGGACATCCGGTGAA+GGG | - | chr4_1:61538889-61538908 | None:intergenic | 50.0% | |
| AGGTTAAGGACATCCGGTGA+AGG | - | chr4_1:61538890-61538909 | None:intergenic | 50.0% | |
| AACAATTCCCTGAGAGCTGG+AGG | - | chr4_1:61539109-61539128 | None:intergenic | 50.0% | |
| TTTCGGTGGAGGTGATGAGA+TGG | + | chr4_1:61539183-61539202 | Msa0561870:CDS | 50.0% | |
| GTGATGAGATGGAGGGAGAT+GGG | + | chr4_1:61539194-61539213 | Msa0561870:CDS | 50.0% | |
| TGATGAGATGGAGGGAGATG+GGG | + | chr4_1:61539195-61539214 | Msa0561870:CDS | 50.0% | |
| ATGGAGGGAGATGGGGATAT+GGG | + | chr4_1:61539202-61539221 | Msa0561870:CDS | 50.0% | |
| GTCACTGCTTCTGTTGGCAA+AGG | + | chr4_1:61539244-61539263 | Msa0561870:CDS | 50.0% | |
| GCTTCTGTTGGCAAAGGAAG+AGG | + | chr4_1:61539250-61539269 | Msa0561870:CDS | 50.0% | |
| TCTGTTGGCAAAGGAAGAGG+AGG | + | chr4_1:61539253-61539272 | Msa0561870:CDS | 50.0% | |
| CTGTTTACCTTGGTGGGACT+TGG | - | chr4_1:61539361-61539380 | None:intergenic | 50.0% | |
| ! | GCAGACTGATAGAGCATCAG+TGG | + | chr4_1:61539612-61539631 | Msa0561870:intron | 50.0% |
| !! | AAGCCTTTTGGTGACCCAGA+TGG | + | chr4_1:61539775-61539794 | Msa0561870:CDS | 50.0% |
| CTTCCATCTGGGTCACCAAA+AGG | - | chr4_1:61539781-61539800 | None:intergenic | 50.0% | |
| TAAGAACCTCATGGCTGCAG+AGG | + | chr4_1:61539803-61539822 | Msa0561870:CDS | 50.0% | |
| GAACTTCACCATGTTGCAGG+TGG | + | chr4_1:61539949-61539968 | Msa0561870:CDS | 50.0% | |
| CAACATGTCCACCTGCAACA+TGG | - | chr4_1:61539960-61539979 | None:intergenic | 50.0% | |
| CATGTTGCAGGTGGACATGT+TGG | + | chr4_1:61539958-61539977 | Msa0561870:CDS | 50.0% | |
| ATGGACACACAATATGCGGC+AGG | + | chr4_1:61540168-61540187 | Msa0561870:CDS | 50.0% | |
| GGACCCTAGTGTTCAGGATA+TGG | + | chr4_1:61538748-61538767 | Msa0561870:CDS | 50.0% | |
| TGGTCGAGGGATTGTAGCTT+TGG | - | chr4_1:61538850-61538869 | None:intergenic | 50.0% | |
| ! | TGAGGGTCTAGAATGGTCGA+GGG | - | chr4_1:61538863-61538882 | None:intergenic | 50.0% |
| ! | ATGAGGGTCTAGAATGGTCG+AGG | - | chr4_1:61538864-61538883 | None:intergenic | 50.0% |
| AGACCCTCATTACCCTTCAC+CGG | + | chr4_1:61538874-61538893 | Msa0561870:CDS | 50.0% | |
| CATCCGGTGAAGGGTAATGA+GGG | - | chr4_1:61538880-61538899 | None:intergenic | 50.0% | |
| ACATCCGGTGAAGGGTAATG+AGG | - | chr4_1:61538881-61538900 | None:intergenic | 50.0% | |
| GGTTAAGGACATCCGGTGAA+GGG | - | chr4_1:61538889-61538908 | None:intergenic | 50.0% | |
| AGGTTAAGGACATCCGGTGA+AGG | - | chr4_1:61538890-61538909 | None:intergenic | 50.0% | |
| AACAATTCCCTGAGAGCTGG+AGG | - | chr4_1:61539109-61539128 | None:intergenic | 50.0% | |
| TTTCGGTGGAGGTGATGAGA+TGG | + | chr4_1:61539183-61539202 | Msa0561870:CDS | 50.0% | |
| GTGATGAGATGGAGGGAGAT+GGG | + | chr4_1:61539194-61539213 | Msa0561870:CDS | 50.0% | |
| TGATGAGATGGAGGGAGATG+GGG | + | chr4_1:61539195-61539214 | Msa0561870:CDS | 50.0% | |
| ATGGAGGGAGATGGGGATAT+GGG | + | chr4_1:61539202-61539221 | Msa0561870:CDS | 50.0% | |
| GTCACTGCTTCTGTTGGCAA+AGG | + | chr4_1:61539244-61539263 | Msa0561870:CDS | 50.0% | |
| GCTTCTGTTGGCAAAGGAAG+AGG | + | chr4_1:61539250-61539269 | Msa0561870:CDS | 50.0% | |
| TCTGTTGGCAAAGGAAGAGG+AGG | + | chr4_1:61539253-61539272 | Msa0561870:CDS | 50.0% | |
| CTGTTTACCTTGGTGGGACT+TGG | - | chr4_1:61539361-61539380 | None:intergenic | 50.0% | |
| ! | GCAGACTGATAGAGCATCAG+TGG | + | chr4_1:61539612-61539631 | Msa0561870:intron | 50.0% |
| !! | AAGCCTTTTGGTGACCCAGA+TGG | + | chr4_1:61539775-61539794 | Msa0561870:CDS | 50.0% |
| CTTCCATCTGGGTCACCAAA+AGG | - | chr4_1:61539781-61539800 | None:intergenic | 50.0% | |
| TAAGAACCTCATGGCTGCAG+AGG | + | chr4_1:61539803-61539822 | Msa0561870:CDS | 50.0% | |
| GAACTTCACCATGTTGCAGG+TGG | + | chr4_1:61539949-61539968 | Msa0561870:CDS | 50.0% | |
| CAACATGTCCACCTGCAACA+TGG | - | chr4_1:61539960-61539979 | None:intergenic | 50.0% | |
| CATGTTGCAGGTGGACATGT+TGG | + | chr4_1:61539958-61539977 | Msa0561870:CDS | 50.0% | |
| ATGGACACACAATATGCGGC+AGG | + | chr4_1:61540168-61540187 | Msa0561870:CDS | 50.0% | |
| GAGTTGGGACCCTAGTGTTC+AGG | + | chr4_1:61538742-61538761 | Msa0561870:CDS | 55.0% | |
| GGCTGTGGAGGAAGGTTCAA+AGG | - | chr4_1:61539088-61539107 | None:intergenic | 55.0% | |
| GTTGGCATGCTATAGCCTCG+AGG | - | chr4_1:61539142-61539161 | None:intergenic | 55.0% | |
| GGTGGAGGTGATGAGATGGA+GGG | + | chr4_1:61539187-61539206 | Msa0561870:CDS | 55.0% | |
| GGTGATGAGATGGAGGGAGA+TGG | + | chr4_1:61539193-61539212 | Msa0561870:CDS | 55.0% | |
| GATGGAGGGAGATGGGGATA+TGG | + | chr4_1:61539201-61539220 | Msa0561870:CDS | 55.0% | |
| ! | AGATGGGGATATGGGAGTGC+TGG | + | chr4_1:61539210-61539229 | Msa0561870:CDS | 55.0% |
| TCTCATCCCAAGTCCCACCA+AGG | + | chr4_1:61539351-61539370 | Msa0561870:CDS | 55.0% | |
| GGATTTCCTCTGCAGCCATG+AGG | - | chr4_1:61539812-61539831 | None:intergenic | 55.0% | |
| GAGTTGGGACCCTAGTGTTC+AGG | + | chr4_1:61538742-61538761 | Msa0561870:CDS | 55.0% | |
| GGCTGTGGAGGAAGGTTCAA+AGG | - | chr4_1:61539088-61539107 | None:intergenic | 55.0% | |
| GTTGGCATGCTATAGCCTCG+AGG | - | chr4_1:61539142-61539161 | None:intergenic | 55.0% | |
| GGTGGAGGTGATGAGATGGA+GGG | + | chr4_1:61539187-61539206 | Msa0561870:CDS | 55.0% | |
| GGTGATGAGATGGAGGGAGA+TGG | + | chr4_1:61539193-61539212 | Msa0561870:CDS | 55.0% | |
| GATGGAGGGAGATGGGGATA+TGG | + | chr4_1:61539201-61539220 | Msa0561870:CDS | 55.0% | |
| ! | AGATGGGGATATGGGAGTGC+TGG | + | chr4_1:61539210-61539229 | Msa0561870:CDS | 55.0% |
| TCTCATCCCAAGTCCCACCA+AGG | + | chr4_1:61539351-61539370 | Msa0561870:CDS | 55.0% | |
| GGATTTCCTCTGCAGCCATG+AGG | - | chr4_1:61539812-61539831 | None:intergenic | 55.0% | |
| TCCACAGCCTCCAGCTCTCA+GGG | + | chr4_1:61539099-61539118 | Msa0561870:CDS | 60.0% | |
| CGGTGGAGGTGATGAGATGG+AGG | + | chr4_1:61539186-61539205 | Msa0561870:CDS | 60.0% | |
| TCCACAGCCTCCAGCTCTCA+GGG | + | chr4_1:61539099-61539118 | Msa0561870:CDS | 60.0% | |
| CGGTGGAGGTGATGAGATGG+AGG | + | chr4_1:61539186-61539205 | Msa0561870:CDS | 60.0% | |
| GAGCTGGAGGCTGTGGAGGA+AGG | - | chr4_1:61539096-61539115 | None:intergenic | 65.0% | |
| CTGAGAGCTGGAGGCTGTGG+AGG | - | chr4_1:61539100-61539119 | None:intergenic | 65.0% | |
| CTCCACAGCCTCCAGCTCTC+AGG | + | chr4_1:61539098-61539117 | Msa0561870:CDS | 65.0% | |
| TCCCTGAGAGCTGGAGGCTG+TGG | - | chr4_1:61539103-61539122 | None:intergenic | 65.0% | |
| GAGCTGGAGGCTGTGGAGGA+AGG | - | chr4_1:61539096-61539115 | None:intergenic | 65.0% | |
| CTGAGAGCTGGAGGCTGTGG+AGG | - | chr4_1:61539100-61539119 | None:intergenic | 65.0% | |
| CTCCACAGCCTCCAGCTCTC+AGG | + | chr4_1:61539098-61539117 | Msa0561870:CDS | 65.0% | |
| TCCCTGAGAGCTGGAGGCTG+TGG | - | chr4_1:61539103-61539122 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 61538413 | 61540215 | 61538413 | ID=Msa0561870;Name=Msa0561870 |
| chr4_1 | mRNA | 61538413 | 61540215 | 61538413 | ID=Msa0561870-mRNA-1;Parent=Msa0561870;Name=Msa0561870-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0|1|1|1|3|0|486 |
| chr4_1 | exon | 61538413 | 61539372 | 61538413 | ID=Msa0561870-mRNA-1:exon:19318;Parent=Msa0561870-mRNA-1 |
| chr4_1 | exon | 61539616 | 61540011 | 61539616 | ID=Msa0561870-mRNA-1:exon:19319;Parent=Msa0561870-mRNA-1 |
| chr4_1 | exon | 61540111 | 61540215 | 61540111 | ID=Msa0561870-mRNA-1:exon:19320;Parent=Msa0561870-mRNA-1 |
| chr4_1 | CDS | 61538413 | 61539372 | 61538413 | ID=Msa0561870-mRNA-1:cds;Parent=Msa0561870-mRNA-1 |
| chr4_1 | CDS | 61539616 | 61540011 | 61539616 | ID=Msa0561870-mRNA-1:cds;Parent=Msa0561870-mRNA-1 |
| chr4_1 | CDS | 61540111 | 61540215 | 61540111 | ID=Msa0561870-mRNA-1:cds;Parent=Msa0561870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
