Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561900 | RHN62931.1 | 94.490 | 490 | 20 | 2 | 1 | 490 | 1 | 483 | 0.0 | 924 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561900 | sp|Q84TK1|BH010_ARATH | 35.397 | 517 | 217 | 15 | 16 | 488 | 13 | 456 | 8.60e-73 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561900 | A0A396IDL8 | 94.490 | 490 | 20 | 2 | 1 | 490 | 1 | 483 | 0.0 | 924 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0561900 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0561900 | Msa0655420 | 0.828555 | 8.421807e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561900 | MtrunA17_Chr4g0052821 | 94.490 | 490 | 20 | 2 | 1 | 490 | 1 | 483 | 0.0 | 924 |
| Msa0561900 | MtrunA17_Chr4g0052841 | 75.848 | 501 | 88 | 8 | 1 | 487 | 1 | 482 | 0.0 | 674 |
| Msa0561900 | MtrunA17_Chr3g0131691 | 27.801 | 241 | 139 | 6 | 263 | 475 | 243 | 476 | 2.80e-17 | 84.3 |
| Msa0561900 | MtrunA17_Chr0c01g0489461 | 25.641 | 195 | 128 | 3 | 298 | 477 | 197 | 389 | 3.36e-14 | 74.3 |
| Msa0561900 | MtrunA17_Chr1g0185621 | 31.613 | 155 | 97 | 4 | 290 | 438 | 463 | 614 | 2.59e-12 | 69.3 |
| Msa0561900 | MtrunA17_Chr8g0366751 | 29.677 | 155 | 104 | 2 | 291 | 442 | 456 | 608 | 3.85e-11 | 65.5 |
| Msa0561900 | MtrunA17_Chr5g0411341 | 28.571 | 196 | 124 | 5 | 291 | 476 | 487 | 676 | 5.69e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561900 | AT2G31220.1 | 35.397 | 517 | 217 | 15 | 16 | 488 | 2 | 445 | 6.14e-74 | 240 |
| Msa0561900 | AT2G31220.2 | 35.397 | 517 | 217 | 15 | 16 | 488 | 13 | 456 | 8.75e-74 | 240 |
| Msa0561900 | AT2G31210.1 | 33.925 | 507 | 223 | 15 | 11 | 487 | 1 | 425 | 1.14e-71 | 234 |
| Msa0561900 | AT1G06170.2 | 35.070 | 499 | 210 | 16 | 11 | 488 | 6 | 411 | 6.94e-71 | 231 |
| Msa0561900 | AT1G06170.1 | 35.070 | 499 | 210 | 16 | 11 | 488 | 6 | 411 | 6.94e-71 | 231 |
| Msa0561900 | AT1G32640.1 | 29.814 | 161 | 86 | 5 | 291 | 442 | 446 | 588 | 5.50e-14 | 75.1 |
| Msa0561900 | AT5G46760.1 | 32.903 | 155 | 92 | 4 | 291 | 442 | 409 | 554 | 2.61e-12 | 69.7 |
| Msa0561900 | AT4G17880.1 | 30.921 | 152 | 95 | 2 | 291 | 442 | 410 | 551 | 5.25e-12 | 68.6 |
| Msa0561900 | AT3G24140.1 | 25.373 | 201 | 133 | 4 | 298 | 482 | 199 | 398 | 6.57e-12 | 67.8 |
| Msa0561900 | AT3G24140.2 | 25.373 | 201 | 133 | 4 | 298 | 482 | 199 | 398 | 8.04e-12 | 67.4 |
| Msa0561900 | AT1G12860.2 | 25.882 | 170 | 108 | 3 | 296 | 458 | 266 | 424 | 1.65e-11 | 66.6 |
| Msa0561900 | AT5G65640.1 | 29.480 | 173 | 104 | 4 | 290 | 462 | 171 | 325 | 1.78e-11 | 65.9 |
| Msa0561900 | AT1G12860.1 | 25.253 | 198 | 127 | 5 | 296 | 485 | 266 | 450 | 4.42e-11 | 65.5 |
| Msa0561900 | AT3G26744.1 | 25.616 | 203 | 124 | 6 | 296 | 485 | 306 | 494 | 5.84e-11 | 65.1 |
| Msa0561900 | AT3G26744.4 | 25.616 | 203 | 124 | 6 | 296 | 485 | 306 | 494 | 5.84e-11 | 65.1 |
| Msa0561900 | AT3G26744.2 | 25.616 | 203 | 124 | 6 | 296 | 485 | 306 | 494 | 5.84e-11 | 65.1 |
| Msa0561900 | AT2G31215.1 | 50.725 | 69 | 33 | 1 | 289 | 357 | 16 | 83 | 6.64e-11 | 60.5 |
Find 123 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTTACTTTGGTGGAATT+TGG | 0.152678 | 4_1:-61556515 | None:intergenic |
| CAGTTTGCTCATGCATATTT+TGG | 0.176939 | 4_1:-61555578 | None:intergenic |
| AGGGATTGTAGCTTTGTTTA+TGG | 0.188979 | 4_1:-61556001 | None:intergenic |
| CACTTGATTTGGCATGGTTT+GGG | 0.215941 | 4_1:-61555664 | None:intergenic |
| CAACAACATGGATAACATTT+TGG | 0.230373 | 4_1:+61555890 | Msa0561900:CDS |
| GAACCTTCCTGCACAGTTTC+CGG | 0.273029 | 4_1:+61556250 | Msa0561900:CDS |
| CCACTTGATTTGGCATGGTT+TGG | 0.275899 | 4_1:-61555665 | None:intergenic |
| TGTGTAGTTGGTGGTATTCT+TGG | 0.280012 | 4_1:-61555977 | None:intergenic |
| GCTGTTTGTTTCCAAGGTTT+TGG | 0.282123 | 4_1:+61557147 | Msa0561900:CDS |
| ATAGCATTGAAGAGAATTTC+AGG | 0.287093 | 4_1:+61555706 | Msa0561900:CDS |
| TCAAGGAATGGTTCTCGTTT+TGG | 0.293055 | 4_1:+61556326 | Msa0561900:CDS |
| AGACCAATGAGTTCAGTTTC+AGG | 0.294029 | 4_1:+61555549 | None:intergenic |
| TATTTACTTTGGTGGAATTT+GGG | 0.298058 | 4_1:-61556514 | None:intergenic |
| CTCATCGAGTAATGGAAATT+AGG | 0.322097 | 4_1:-61556152 | None:intergenic |
| TTACCTGCAACCACTTGATT+TGG | 0.325403 | 4_1:-61555675 | None:intergenic |
| TGGGGAGAGTTATTATCTTC+TGG | 0.329534 | 4_1:-61555645 | None:intergenic |
| TTTGTTTATGGTTGTGTAGT+TGG | 0.331934 | 4_1:-61555989 | None:intergenic |
| CAGCAGTTGTCCCACATAAT+AGG | 0.332222 | 4_1:+61557417 | Msa0561900:CDS |
| GAGATTGAGGCAATTCTCTA+AGG | 0.339121 | 4_1:-61556274 | None:intergenic |
| AGCTGTCACATGAAGCCTTT+TGG | 0.351110 | 4_1:+61556998 | Msa0561900:CDS |
| CTTGAGTTGTCTGAGCCTAT+TGG | 0.353217 | 4_1:-61556191 | None:intergenic |
| AACATTGCACAACAAAATCT+TGG | 0.361426 | 4_1:+61555843 | Msa0561900:CDS |
| GGACCCTAGTGCTCAGGATA+TGG | 0.374887 | 4_1:+61555941 | Msa0561900:CDS |
| TTGGAACTTAACCATGTTGC+AGG | 0.378869 | 4_1:+61557181 | Msa0561900:CDS |
| TTGCTTGCTGTTTGTTTCCA+AGG | 0.384323 | 4_1:+61557141 | Msa0561900:CDS |
| TATCAACCTTGCTATTGAAC+AGG | 0.396384 | 4_1:-61557231 | Msa0561910:intron |
| TTGGTGGTATTCTTGGTGAT+TGG | 0.402907 | 4_1:-61555970 | None:intergenic |
| ATGAGGGTCTTGAATGGTTG+AGG | 0.403582 | 4_1:-61556021 | None:intergenic |
| TTTATTGTTATTTACTTTGG+TGG | 0.406527 | 4_1:-61556522 | None:intergenic |
| CAAAATATGCATGAGCAAAC+TGG | 0.407375 | 4_1:+61555579 | Msa0561900:CDS |
| CAAAATCTTGGTTTGAACAT+AGG | 0.414981 | 4_1:+61555855 | Msa0561900:CDS |
| TGGTGAAGATTTAGTACATC+TGG | 0.421373 | 4_1:-61556053 | None:intergenic |
| ATGGAGGGAGATGGAGGTAT+GGG | 0.422492 | 4_1:+61556362 | Msa0561900:CDS |
| GGGGATGAGATGGAGGGAGA+TGG | 0.422522 | 4_1:+61556353 | Msa0561900:CDS |
| ATGCAAGTGCTATAGCAAAC+AGG | 0.424664 | 4_1:+61557366 | Msa0561900:CDS |
| ATAGATGAAGCTGAGGATCT+AGG | 0.426468 | 4_1:-61556080 | None:intergenic |
| GATGGAGGGAGATGGAGGTA+TGG | 0.426821 | 4_1:+61556361 | Msa0561900:CDS |
| ATGCCAAATCAAGTGGTTGC+AGG | 0.427884 | 4_1:+61555672 | Msa0561900:CDS |
| TTTCTTGGAGACCTTCCAAT+AGG | 0.433519 | 4_1:+61556176 | Msa0561900:CDS |
| AGTTGGGGTTGTGAGGCAAA+TGG | 0.435483 | 4_1:-61556120 | None:intergenic |
| AAAATCTTGGTTTGAACATA+GGG | 0.440034 | 4_1:+61555856 | Msa0561900:CDS |
| AAACAGGGTGATTGATGTTC+TGG | 0.444364 | 4_1:+61557382 | Msa0561900:CDS |
| TGGTGGAGGGGATGAGATGG+AGG | 0.452096 | 4_1:+61556346 | Msa0561900:CDS |
| GATGTCTCCACTTATACAAA+TGG | 0.460153 | 4_1:+61555801 | Msa0561900:CDS |
| GAGGTCCTTATGCTTCCATC+TGG | 0.463883 | 4_1:-61557025 | None:intergenic |
| AGTGAATCCATTTGTATAAG+TGG | 0.466255 | 4_1:-61555808 | None:intergenic |
| AGACATCTTCAAGGTGTTGT+GGG | 0.477092 | 4_1:-61555785 | None:intergenic |
| ACAACCTACATCCTATTATG+TGG | 0.478099 | 4_1:-61557428 | Msa0561910:intron |
| GATGAGATGGAGGGAGATGG+AGG | 0.485707 | 4_1:+61556356 | Msa0561900:CDS |
| CAAACTGTTTCAGAGAAAGA+AGG | 0.486584 | 4_1:+61557114 | Msa0561900:CDS |
| AACTGTGCAGGAAGGTTCAT+AGG | 0.487200 | 4_1:-61556245 | None:intergenic |
| AACACCTTCTGCCATTGTGT+TGG | 0.495842 | 4_1:-61555613 | None:intergenic |
| ACAAAGAAGAGAGCAATTGA+AGG | 0.497369 | 4_1:+61556463 | Msa0561900:CDS |
| GTTGTGAGGCAAATGGTGGA+TGG | 0.499696 | 4_1:-61556113 | None:intergenic |
| CTAAGGGCCGGAAACTGTGC+AGG | 0.501150 | 4_1:-61556257 | None:intergenic |
| TGAGGGTCTTGAATGGTTGA+GGG | 0.501208 | 4_1:-61556020 | None:intergenic |
| CAAGAAAACTCATCGAGTAA+TGG | 0.504530 | 4_1:-61556160 | None:intergenic |
| TGCAACCACTTGATTTGGCA+TGG | 0.510199 | 4_1:-61555670 | None:intergenic |
| CTTCCATCTGGATCACCAAA+AGG | 0.510562 | 4_1:-61557013 | None:intergenic |
| AGATGGAGGTATGGGAGTGT+CGG | 0.512294 | 4_1:+61556370 | Msa0561900:CDS |
| GGAAGGTTCATAGGAAATAG+AGG | 0.514568 | 4_1:-61556236 | None:intergenic |
| GAGACATCTTCAAGGTGTTG+TGG | 0.514897 | 4_1:-61555786 | None:intergenic |
| CTGAAGTTCCTCCAAAACCT+TGG | 0.519653 | 4_1:-61557158 | Msa0561910:CDS |
| TAGTTTCCTGTTCAATAGCA+AGG | 0.522557 | 4_1:+61557225 | Msa0561900:CDS |
| ACGAGAACCATTCCTTGAGT+TGG | 0.523595 | 4_1:-61556321 | None:intergenic |
| TCTCCTGAAACTGAACTCAT+TGG | 0.525396 | 4_1:-61555552 | None:intergenic |
| AGTGAATGAGCTGAAACTAT+TGG | 0.528670 | 4_1:+61556910 | Msa0561900:CDS |
| GGTGTATCAGAATTCGAGTT+GGG | 0.534079 | 4_1:+61555920 | Msa0561900:CDS |
| TGGGGTTGTGAGGCAAATGG+TGG | 0.535440 | 4_1:-61556117 | None:intergenic |
| TAGTCCATATCCTGAGCACT+AGG | 0.537172 | 4_1:-61555945 | None:intergenic |
| GTTTATGGTTGTGTAGTTGG+TGG | 0.542610 | 4_1:-61555986 | None:intergenic |
| AGAGAATTTCAGGCCTTCTG+TGG | 0.547008 | 4_1:+61555716 | Msa0561900:CDS |
| TAGACGTGAGGGAGAGATTG+AGG | 0.548170 | 4_1:-61556287 | None:intergenic |
| TATAAGTGGAGACATCTTCA+AGG | 0.550747 | 4_1:-61555794 | None:intergenic |
| AAGACAGTGAGGTTGATGTT+CGG | 0.551962 | 4_1:+61557068 | Msa0561900:CDS |
| GAGTTGGGACCCTAGTGCTC+AGG | 0.552970 | 4_1:+61555935 | Msa0561900:CDS |
| GTGATCCAGATGGAAGCATA+AGG | 0.554959 | 4_1:+61557020 | Msa0561900:CDS |
| ACATCTGGTGAAGGATAATG+AGG | 0.556346 | 4_1:-61556038 | None:intergenic |
| GGTGGAGGGGATGAGATGGA+GGG | 0.559231 | 4_1:+61556347 | Msa0561900:CDS |
| GGAGAAGAAAAGACACGAGA+TGG | 0.559458 | 4_1:+61556934 | Msa0561900:CDS |
| TGAGGCAATTCTCTAAGGGC+CGG | 0.565775 | 4_1:-61556269 | None:intergenic |
| ACTTGATTTGGCATGGTTTG+GGG | 0.567633 | 4_1:-61555663 | None:intergenic |
| GAACCATTCCTTGAGTTGGT+AGG | 0.569140 | 4_1:-61556317 | None:intergenic |
| ATGGAAGCATAAGGACCTCA+TGG | 0.569401 | 4_1:+61557029 | Msa0561900:CDS |
| TCACTTATGCAGGTAACTGA+AGG | 0.570501 | 4_1:+61557332 | Msa0561900:intron |
| GAGAATTTCAGGCCTTCTGT+GGG | 0.572554 | 4_1:+61555717 | Msa0561900:CDS |
| TCAAAATCTCTTCCCACAGA+AGG | 0.573360 | 4_1:-61555729 | None:intergenic |
| CCAAACCATGCCAAATCAAG+TGG | 0.578899 | 4_1:+61555665 | Msa0561900:CDS |
| TGTCCCACATAATAGGATGT+AGG | 0.580034 | 4_1:+61557424 | Msa0561900:CDS |
| AGGATAATGAGGGTCTTGAA+TGG | 0.581908 | 4_1:-61556027 | None:intergenic |
| GATTCCAACACAATGGCAGA+AGG | 0.582517 | 4_1:+61555609 | Msa0561900:CDS |
| CAACCTACATCCTATTATGT+GGG | 0.595003 | 4_1:-61557427 | Msa0561910:intron |
| ATGCCTACCAACTCAAGGAA+TGG | 0.597546 | 4_1:+61556314 | Msa0561900:CDS |
| CAAAGAAGAGAGCAATTGAA+GGG | 0.598165 | 4_1:+61556464 | Msa0561900:CDS |
| TAAGGACCTCATGGCTGCAG+AGG | 0.598266 | 4_1:+61557038 | Msa0561900:CDS |
| TGATTTCCTCTGCAGCCATG+AGG | 0.604351 | 4_1:-61557044 | None:intergenic |
| AAGCTGAGGATCTAGGAAAG+TGG | 0.606657 | 4_1:-61556073 | None:intergenic |
| GAACTTAACCATGTTGCAGG+TGG | 0.608004 | 4_1:+61557184 | Msa0561900:CDS |
| AGATTGAGGCAATTCTCTAA+GGG | 0.609395 | 4_1:-61556273 | None:intergenic |
| AGTTGTCTGAGCCTATTGGA+AGG | 0.611422 | 4_1:-61556187 | None:intergenic |
| ACAGGATGACAGAGCATCAG+TGG | 0.612086 | 4_1:+61556847 | Msa0561900:intron |
| CAACATGTCCACCTGCAACA+TGG | 0.612887 | 4_1:-61557192 | Msa0561910:CDS |
| CATGTTGCAGGTGGACATGT+TGG | 0.614636 | 4_1:+61557193 | Msa0561900:CDS |
| TGCAAGTGCTATAGCAAACA+GGG | 0.617014 | 4_1:+61557367 | Msa0561900:CDS |
| ATAGCATGCCTACCAACTCA+AGG | 0.617097 | 4_1:+61556309 | Msa0561900:CDS |
| TGTGAGAATAGATGAAGCTG+AGG | 0.619586 | 4_1:-61556087 | None:intergenic |
| AGATTTAGTACATCTGGTGA+AGG | 0.621346 | 4_1:-61556047 | None:intergenic |
| GAATGAGCTGAAACTATTGG+TGG | 0.621989 | 4_1:+61556913 | Msa0561900:CDS |
| AGGTGTATCAGAATTCGAGT+TGG | 0.627894 | 4_1:+61555919 | Msa0561900:CDS |
| AGGGAAGATACAAAATCTTG+AGG | 0.628748 | 4_1:+61556483 | Msa0561900:CDS |
| ATAGGCTCAGACAACTCAAG+TGG | 0.630249 | 4_1:+61556194 | Msa0561900:CDS |
| ATCGAGTAATGGAAATTAGG+TGG | 0.631613 | 4_1:-61556149 | None:intergenic |
| GATGACAGAGCATCAGTGGT+CGG | 0.636237 | 4_1:+61556851 | Msa0561900:CDS |
| GGGCCGGAAACTGTGCAGGA+AGG | 0.638113 | 4_1:-61556253 | None:intergenic |
| AGTCCATATCCTGAGCACTA+GGG | 0.638599 | 4_1:-61555944 | None:intergenic |
| GGGAGTGTCGGAATTCAACA+AGG | 0.647586 | 4_1:+61556382 | Msa0561900:CDS |
| TAGGCATGCTATAGACGTGA+GGG | 0.648613 | 4_1:-61556298 | None:intergenic |
| AGCTACAGAACATTTGACAA+CGG | 0.658358 | 4_1:+61556436 | Msa0561900:CDS |
| GTAGGCATGCTATAGACGTG+AGG | 0.659082 | 4_1:-61556299 | None:intergenic |
| TTGCTTTGATTCCAACACAA+TGG | 0.661550 | 4_1:+61555602 | Msa0561900:CDS |
| CATCTGGTGAAGGATAATGA+GGG | 0.694690 | 4_1:-61556037 | None:intergenic |
| GAACTACTACTACAACAACA+TGG | 0.699767 | 4_1:+61555878 | Msa0561900:CDS |
| GAGGAAATCAAAAGACAGTG+AGG | 0.707672 | 4_1:+61557057 | Msa0561900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATTGTTATTTACTT+TGG | - | chr4_1:61556528-61556547 | None:intergenic | 10.0% |
| !!! | AATTTTATAAAGTATTTACT+TGG | - | chr4_1:61557260-61557279 | Msa0561910:intron | 10.0% |
| !!! | TTATTTATTGTTATTTACTT+TGG | - | chr4_1:61556528-61556547 | None:intergenic | 10.0% |
| !!! | AATTTTATAAAGTATTTACT+TGG | - | chr4_1:61557260-61557279 | Msa0561910:intron | 10.0% |
| !! | TTCATAGATATAATTAGATA+TGG | - | chr4_1:61556571-61556590 | None:intergenic | 15.0% |
| !!! | TTAAATCTTGAATTATTTTG+AGG | + | chr4_1:61556632-61556651 | Msa0561900:intron | 15.0% |
| !! | GTTAAAAATGACATTATTAT+TGG | + | chr4_1:61556705-61556724 | Msa0561900:intron | 15.0% |
| !! | ATAAGATTCAAATCATTATT+TGG | + | chr4_1:61556749-61556768 | Msa0561900:intron | 15.0% |
| !! | ACCATGATTTAAATAATTAA+CGG | + | chr4_1:61556808-61556827 | Msa0561900:intron | 15.0% |
| !! | TAGATTTATTACATTTGATT+TGG | + | chr4_1:61557286-61557305 | Msa0561900:intron | 15.0% |
| !! | TTCATAGATATAATTAGATA+TGG | - | chr4_1:61556571-61556590 | None:intergenic | 15.0% |
| !!! | TTAAATCTTGAATTATTTTG+AGG | + | chr4_1:61556632-61556651 | Msa0561900:intron | 15.0% |
| !! | GTTAAAAATGACATTATTAT+TGG | + | chr4_1:61556705-61556724 | Msa0561900:intron | 15.0% |
| !! | ATAAGATTCAAATCATTATT+TGG | + | chr4_1:61556749-61556768 | Msa0561900:intron | 15.0% |
| !! | ACCATGATTTAAATAATTAA+CGG | + | chr4_1:61556808-61556827 | Msa0561900:intron | 15.0% |
| !! | TAGATTTATTACATTTGATT+TGG | + | chr4_1:61557286-61557305 | Msa0561900:intron | 15.0% |
| !!! | TTTATTGTTATTTACTTTGG+TGG | - | chr4_1:61556525-61556544 | None:intergenic | 20.0% |
| !! | CCATGATTTAAATAATTAAC+GGG | + | chr4_1:61556809-61556828 | Msa0561900:intron | 20.0% |
| !! | TTGGTTATATATTAACTATG+AGG | + | chr4_1:61557305-61557324 | Msa0561900:intron | 20.0% |
| !!! | TTTATTGTTATTTACTTTGG+TGG | - | chr4_1:61556525-61556544 | None:intergenic | 20.0% |
| !! | CCATGATTTAAATAATTAAC+GGG | + | chr4_1:61556809-61556828 | Msa0561900:intron | 20.0% |
| !! | TTGGTTATATATTAACTATG+AGG | + | chr4_1:61557305-61557324 | Msa0561900:intron | 20.0% |
| !! | AAAATCTTGGTTTGAACATA+GGG | + | chr4_1:61555856-61555875 | Msa0561900:CDS | 25.0% |
| ! | TATTTACTTTGGTGGAATTT+GGG | - | chr4_1:61556517-61556536 | None:intergenic | 25.0% |
| ! | TTATTTACTTTGGTGGAATT+TGG | - | chr4_1:61556518-61556537 | None:intergenic | 25.0% |
| ! | CCCGTTAATTATTTAAATCA+TGG | - | chr4_1:61556812-61556831 | None:intergenic | 25.0% |
| !! | AAAATCTTGGTTTGAACATA+GGG | + | chr4_1:61555856-61555875 | Msa0561900:CDS | 25.0% |
| ! | TATTTACTTTGGTGGAATTT+GGG | - | chr4_1:61556517-61556536 | None:intergenic | 25.0% |
| ! | TTATTTACTTTGGTGGAATT+TGG | - | chr4_1:61556518-61556537 | None:intergenic | 25.0% |
| ! | CCCGTTAATTATTTAAATCA+TGG | - | chr4_1:61556812-61556831 | None:intergenic | 25.0% |
| ! | ATAGCATTGAAGAGAATTTC+AGG | + | chr4_1:61555706-61555725 | Msa0561900:CDS | 30.0% |
| AGTGAATCCATTTGTATAAG+TGG | - | chr4_1:61555811-61555830 | None:intergenic | 30.0% | |
| AACATTGCACAACAAAATCT+TGG | + | chr4_1:61555843-61555862 | Msa0561900:CDS | 30.0% | |
| ! | CAAAATCTTGGTTTGAACAT+AGG | + | chr4_1:61555855-61555874 | Msa0561900:CDS | 30.0% |
| ! | CAACAACATGGATAACATTT+TGG | + | chr4_1:61555890-61555909 | Msa0561900:CDS | 30.0% |
| TTTGTTTATGGTTGTGTAGT+TGG | - | chr4_1:61555992-61556011 | None:intergenic | 30.0% | |
| ATCTAATGACAAAAGCAAAG+TGG | - | chr4_1:61556605-61556624 | None:intergenic | 30.0% | |
| ! | TTGTTATGTCACTTGTAGTT+TGG | + | chr4_1:61556683-61556702 | Msa0561900:intron | 30.0% |
| ! | ATAGCATTGAAGAGAATTTC+AGG | + | chr4_1:61555706-61555725 | Msa0561900:CDS | 30.0% |
| AGTGAATCCATTTGTATAAG+TGG | - | chr4_1:61555811-61555830 | None:intergenic | 30.0% | |
| AACATTGCACAACAAAATCT+TGG | + | chr4_1:61555843-61555862 | Msa0561900:CDS | 30.0% | |
| ! | CAAAATCTTGGTTTGAACAT+AGG | + | chr4_1:61555855-61555874 | Msa0561900:CDS | 30.0% |
| ! | CAACAACATGGATAACATTT+TGG | + | chr4_1:61555890-61555909 | Msa0561900:CDS | 30.0% |
| TTTGTTTATGGTTGTGTAGT+TGG | - | chr4_1:61555992-61556011 | None:intergenic | 30.0% | |
| ATCTAATGACAAAAGCAAAG+TGG | - | chr4_1:61556605-61556624 | None:intergenic | 30.0% | |
| ! | TTGTTATGTCACTTGTAGTT+TGG | + | chr4_1:61556683-61556702 | Msa0561900:intron | 30.0% |
| !! | CAGTTTGCTCATGCATATTT+TGG | - | chr4_1:61555581-61555600 | None:intergenic | 35.0% |
| CAAAATATGCATGAGCAAAC+TGG | + | chr4_1:61555579-61555598 | Msa0561900:CDS | 35.0% | |
| TTGCTTTGATTCCAACACAA+TGG | + | chr4_1:61555602-61555621 | Msa0561900:CDS | 35.0% | |
| !! | TGTGGGAAGAGATTTTGATA+AGG | + | chr4_1:61555734-61555753 | Msa0561900:CDS | 35.0% |
| TATAAGTGGAGACATCTTCA+AGG | - | chr4_1:61555797-61555816 | None:intergenic | 35.0% | |
| GATGTCTCCACTTATACAAA+TGG | + | chr4_1:61555801-61555820 | Msa0561900:CDS | 35.0% | |
| ! | TGTGCAATGTTTTCTGATGA+GGG | - | chr4_1:61555834-61555853 | None:intergenic | 35.0% |
| ! | TTGTGCAATGTTTTCTGATG+AGG | - | chr4_1:61555835-61555854 | None:intergenic | 35.0% |
| GAACTACTACTACAACAACA+TGG | + | chr4_1:61555878-61555897 | Msa0561900:CDS | 35.0% | |
| !! | AGGGATTGTAGCTTTGTTTA+TGG | - | chr4_1:61556004-61556023 | None:intergenic | 35.0% |
| AGATTTAGTACATCTGGTGA+AGG | - | chr4_1:61556050-61556069 | None:intergenic | 35.0% | |
| TGGTGAAGATTTAGTACATC+TGG | - | chr4_1:61556056-61556075 | None:intergenic | 35.0% | |
| !!! | AATTAGGTGGCTTTTGAGTT+GGG | - | chr4_1:61556139-61556158 | None:intergenic | 35.0% |
| !! | AAATTAGGTGGCTTTTGAGT+TGG | - | chr4_1:61556140-61556159 | None:intergenic | 35.0% |
| ! | ATCGAGTAATGGAAATTAGG+TGG | - | chr4_1:61556152-61556171 | None:intergenic | 35.0% |
| ! | CTCATCGAGTAATGGAAATT+AGG | - | chr4_1:61556155-61556174 | None:intergenic | 35.0% |
| CAAGAAAACTCATCGAGTAA+TGG | - | chr4_1:61556163-61556182 | None:intergenic | 35.0% | |
| ! | CATTACTCGATGAGTTTTCT+TGG | + | chr4_1:61556161-61556180 | Msa0561900:CDS | 35.0% |
| AGATTGAGGCAATTCTCTAA+GGG | - | chr4_1:61556276-61556295 | None:intergenic | 35.0% | |
| AGCTACAGAACATTTGACAA+CGG | + | chr4_1:61556436-61556455 | Msa0561900:CDS | 35.0% | |
| ACAAAGAAGAGAGCAATTGA+AGG | + | chr4_1:61556463-61556482 | Msa0561900:CDS | 35.0% | |
| CAAAGAAGAGAGCAATTGAA+GGG | + | chr4_1:61556464-61556483 | Msa0561900:CDS | 35.0% | |
| AGGGAAGATACAAAATCTTG+AGG | + | chr4_1:61556483-61556502 | Msa0561900:CDS | 35.0% | |
| AGTGAATGAGCTGAAACTAT+TGG | + | chr4_1:61556910-61556929 | Msa0561900:CDS | 35.0% | |
| CAAACTGTTTCAGAGAAAGA+AGG | + | chr4_1:61557114-61557133 | Msa0561900:CDS | 35.0% | |
| TAGTTTCCTGTTCAATAGCA+AGG | + | chr4_1:61557225-61557244 | Msa0561900:CDS | 35.0% | |
| !! | TATCAACCTTGCTATTGAAC+AGG | - | chr4_1:61557234-61557253 | Msa0561910:intron | 35.0% |
| !! | CAGTTTGCTCATGCATATTT+TGG | - | chr4_1:61555581-61555600 | None:intergenic | 35.0% |
| CAAAATATGCATGAGCAAAC+TGG | + | chr4_1:61555579-61555598 | Msa0561900:CDS | 35.0% | |
| TTGCTTTGATTCCAACACAA+TGG | + | chr4_1:61555602-61555621 | Msa0561900:CDS | 35.0% | |
| !! | TGTGGGAAGAGATTTTGATA+AGG | + | chr4_1:61555734-61555753 | Msa0561900:CDS | 35.0% |
| TATAAGTGGAGACATCTTCA+AGG | - | chr4_1:61555797-61555816 | None:intergenic | 35.0% | |
| GATGTCTCCACTTATACAAA+TGG | + | chr4_1:61555801-61555820 | Msa0561900:CDS | 35.0% | |
| ! | TGTGCAATGTTTTCTGATGA+GGG | - | chr4_1:61555834-61555853 | None:intergenic | 35.0% |
| ! | TTGTGCAATGTTTTCTGATG+AGG | - | chr4_1:61555835-61555854 | None:intergenic | 35.0% |
| GAACTACTACTACAACAACA+TGG | + | chr4_1:61555878-61555897 | Msa0561900:CDS | 35.0% | |
| !! | AGGGATTGTAGCTTTGTTTA+TGG | - | chr4_1:61556004-61556023 | None:intergenic | 35.0% |
| AGATTTAGTACATCTGGTGA+AGG | - | chr4_1:61556050-61556069 | None:intergenic | 35.0% | |
| TGGTGAAGATTTAGTACATC+TGG | - | chr4_1:61556056-61556075 | None:intergenic | 35.0% | |
| !!! | AATTAGGTGGCTTTTGAGTT+GGG | - | chr4_1:61556139-61556158 | None:intergenic | 35.0% |
| !! | AAATTAGGTGGCTTTTGAGT+TGG | - | chr4_1:61556140-61556159 | None:intergenic | 35.0% |
| ! | ATCGAGTAATGGAAATTAGG+TGG | - | chr4_1:61556152-61556171 | None:intergenic | 35.0% |
| ! | CTCATCGAGTAATGGAAATT+AGG | - | chr4_1:61556155-61556174 | None:intergenic | 35.0% |
| CAAGAAAACTCATCGAGTAA+TGG | - | chr4_1:61556163-61556182 | None:intergenic | 35.0% | |
| ! | CATTACTCGATGAGTTTTCT+TGG | + | chr4_1:61556161-61556180 | Msa0561900:CDS | 35.0% |
| AGATTGAGGCAATTCTCTAA+GGG | - | chr4_1:61556276-61556295 | None:intergenic | 35.0% | |
| AGCTACAGAACATTTGACAA+CGG | + | chr4_1:61556436-61556455 | Msa0561900:CDS | 35.0% | |
| ACAAAGAAGAGAGCAATTGA+AGG | + | chr4_1:61556463-61556482 | Msa0561900:CDS | 35.0% | |
| CAAAGAAGAGAGCAATTGAA+GGG | + | chr4_1:61556464-61556483 | Msa0561900:CDS | 35.0% | |
| AGGGAAGATACAAAATCTTG+AGG | + | chr4_1:61556483-61556502 | Msa0561900:CDS | 35.0% | |
| AGTGAATGAGCTGAAACTAT+TGG | + | chr4_1:61556910-61556929 | Msa0561900:CDS | 35.0% | |
| CAAACTGTTTCAGAGAAAGA+AGG | + | chr4_1:61557114-61557133 | Msa0561900:CDS | 35.0% | |
| TAGTTTCCTGTTCAATAGCA+AGG | + | chr4_1:61557225-61557244 | Msa0561900:CDS | 35.0% | |
| !! | TATCAACCTTGCTATTGAAC+AGG | - | chr4_1:61557234-61557253 | Msa0561910:intron | 35.0% |
| TGGGGAGAGTTATTATCTTC+TGG | - | chr4_1:61555648-61555667 | None:intergenic | 40.0% | |
| !! | ACTTGATTTGGCATGGTTTG+GGG | - | chr4_1:61555666-61555685 | None:intergenic | 40.0% |
| !! | CACTTGATTTGGCATGGTTT+GGG | - | chr4_1:61555667-61555686 | None:intergenic | 40.0% |
| TTACCTGCAACCACTTGATT+TGG | - | chr4_1:61555678-61555697 | None:intergenic | 40.0% | |
| TCAAAATCTCTTCCCACAGA+AGG | - | chr4_1:61555732-61555751 | None:intergenic | 40.0% | |
| !! | GGGAAGAGATTTTGATAAGG+AGG | + | chr4_1:61555737-61555756 | Msa0561900:CDS | 40.0% |
| !! | AGACATCTTCAAGGTGTTGT+GGG | - | chr4_1:61555788-61555807 | None:intergenic | 40.0% |
| !!! | GGATAACATTTTGGAGCAAG+AGG | + | chr4_1:61555899-61555918 | Msa0561900:CDS | 40.0% |
| AGGTGTATCAGAATTCGAGT+TGG | + | chr4_1:61555919-61555938 | Msa0561900:CDS | 40.0% | |
| ! | GGTGTATCAGAATTCGAGTT+GGG | + | chr4_1:61555920-61555939 | Msa0561900:CDS | 40.0% |
| ! | TTGGTGGTATTCTTGGTGAT+TGG | - | chr4_1:61555973-61555992 | None:intergenic | 40.0% |
| !! | TGTGTAGTTGGTGGTATTCT+TGG | - | chr4_1:61555980-61555999 | None:intergenic | 40.0% |
| GTTTATGGTTGTGTAGTTGG+TGG | - | chr4_1:61555989-61556008 | None:intergenic | 40.0% | |
| AGGATAATGAGGGTCTTGAA+TGG | - | chr4_1:61556030-61556049 | None:intergenic | 40.0% | |
| CATCTGGTGAAGGATAATGA+GGG | - | chr4_1:61556040-61556059 | None:intergenic | 40.0% | |
| ACATCTGGTGAAGGATAATG+AGG | - | chr4_1:61556041-61556060 | None:intergenic | 40.0% | |
| ATAGATGAAGCTGAGGATCT+AGG | - | chr4_1:61556083-61556102 | None:intergenic | 40.0% | |
| TGTGAGAATAGATGAAGCTG+AGG | - | chr4_1:61556090-61556109 | None:intergenic | 40.0% | |
| !!! | ATTAGGTGGCTTTTGAGTTG+GGG | - | chr4_1:61556138-61556157 | None:intergenic | 40.0% |
| TTTCTTGGAGACCTTCCAAT+AGG | + | chr4_1:61556176-61556195 | Msa0561900:CDS | 40.0% | |
| GGAAGGTTCATAGGAAATAG+AGG | - | chr4_1:61556239-61556258 | None:intergenic | 40.0% | |
| GAGATTGAGGCAATTCTCTA+AGG | - | chr4_1:61556277-61556296 | None:intergenic | 40.0% | |
| ! | TCAAGGAATGGTTCTCGTTT+TGG | + | chr4_1:61556326-61556345 | Msa0561900:CDS | 40.0% |
| !! | AACAAGGTCACTGCTTTTGT+TGG | + | chr4_1:61556398-61556417 | Msa0561900:CDS | 40.0% |
| ! | GCTTTTGTTGGCAAAGGAAA+AGG | + | chr4_1:61556410-61556429 | Msa0561900:CDS | 40.0% |
| !! | GGGCAGTTTTGATCTAATAC+AGG | + | chr4_1:61556829-61556848 | Msa0561900:intron | 40.0% |
| GAATGAGCTGAAACTATTGG+TGG | + | chr4_1:61556913-61556932 | Msa0561900:CDS | 40.0% | |
| GAGGAAATCAAAAGACAGTG+AGG | + | chr4_1:61557057-61557076 | Msa0561900:CDS | 40.0% | |
| !! | AAGACAGTGAGGTTGATGTT+CGG | + | chr4_1:61557068-61557087 | Msa0561900:CDS | 40.0% |
| !! | TTGCTTGCTGTTTGTTTCCA+AGG | + | chr4_1:61557141-61557160 | Msa0561900:CDS | 40.0% |
| ! | GCTGTTTGTTTCCAAGGTTT+TGG | + | chr4_1:61557147-61557166 | Msa0561900:CDS | 40.0% |
| !! | GTTTGTTTCCAAGGTTTTGG+AGG | + | chr4_1:61557150-61557169 | Msa0561900:CDS | 40.0% |
| TTGGAACTTAACCATGTTGC+AGG | + | chr4_1:61557181-61557200 | Msa0561900:CDS | 40.0% | |
| ! | ATGAGGTGTTTCACTTATGC+AGG | + | chr4_1:61557322-61557341 | Msa0561900:intron | 40.0% |
| TCACTTATGCAGGTAACTGA+AGG | + | chr4_1:61557332-61557351 | Msa0561900:intron | 40.0% | |
| ATGCAAGTGCTATAGCAAAC+AGG | + | chr4_1:61557366-61557385 | Msa0561900:CDS | 40.0% | |
| TGCAAGTGCTATAGCAAACA+GGG | + | chr4_1:61557367-61557386 | Msa0561900:CDS | 40.0% | |
| AAACAGGGTGATTGATGTTC+TGG | + | chr4_1:61557382-61557401 | Msa0561900:CDS | 40.0% | |
| TGGGGAGAGTTATTATCTTC+TGG | - | chr4_1:61555648-61555667 | None:intergenic | 40.0% | |
| !! | ACTTGATTTGGCATGGTTTG+GGG | - | chr4_1:61555666-61555685 | None:intergenic | 40.0% |
| !! | CACTTGATTTGGCATGGTTT+GGG | - | chr4_1:61555667-61555686 | None:intergenic | 40.0% |
| TTACCTGCAACCACTTGATT+TGG | - | chr4_1:61555678-61555697 | None:intergenic | 40.0% | |
| TCAAAATCTCTTCCCACAGA+AGG | - | chr4_1:61555732-61555751 | None:intergenic | 40.0% | |
| !! | GGGAAGAGATTTTGATAAGG+AGG | + | chr4_1:61555737-61555756 | Msa0561900:CDS | 40.0% |
| !! | AGACATCTTCAAGGTGTTGT+GGG | - | chr4_1:61555788-61555807 | None:intergenic | 40.0% |
| !!! | GGATAACATTTTGGAGCAAG+AGG | + | chr4_1:61555899-61555918 | Msa0561900:CDS | 40.0% |
| AGGTGTATCAGAATTCGAGT+TGG | + | chr4_1:61555919-61555938 | Msa0561900:CDS | 40.0% | |
| ! | GGTGTATCAGAATTCGAGTT+GGG | + | chr4_1:61555920-61555939 | Msa0561900:CDS | 40.0% |
| ! | TTGGTGGTATTCTTGGTGAT+TGG | - | chr4_1:61555973-61555992 | None:intergenic | 40.0% |
| !! | TGTGTAGTTGGTGGTATTCT+TGG | - | chr4_1:61555980-61555999 | None:intergenic | 40.0% |
| GTTTATGGTTGTGTAGTTGG+TGG | - | chr4_1:61555989-61556008 | None:intergenic | 40.0% | |
| AGGATAATGAGGGTCTTGAA+TGG | - | chr4_1:61556030-61556049 | None:intergenic | 40.0% | |
| CATCTGGTGAAGGATAATGA+GGG | - | chr4_1:61556040-61556059 | None:intergenic | 40.0% | |
| ACATCTGGTGAAGGATAATG+AGG | - | chr4_1:61556041-61556060 | None:intergenic | 40.0% | |
| ATAGATGAAGCTGAGGATCT+AGG | - | chr4_1:61556083-61556102 | None:intergenic | 40.0% | |
| TGTGAGAATAGATGAAGCTG+AGG | - | chr4_1:61556090-61556109 | None:intergenic | 40.0% | |
| !!! | ATTAGGTGGCTTTTGAGTTG+GGG | - | chr4_1:61556138-61556157 | None:intergenic | 40.0% |
| TTTCTTGGAGACCTTCCAAT+AGG | + | chr4_1:61556176-61556195 | Msa0561900:CDS | 40.0% | |
| GGAAGGTTCATAGGAAATAG+AGG | - | chr4_1:61556239-61556258 | None:intergenic | 40.0% | |
| GAGATTGAGGCAATTCTCTA+AGG | - | chr4_1:61556277-61556296 | None:intergenic | 40.0% | |
| ! | TCAAGGAATGGTTCTCGTTT+TGG | + | chr4_1:61556326-61556345 | Msa0561900:CDS | 40.0% |
| !! | AACAAGGTCACTGCTTTTGT+TGG | + | chr4_1:61556398-61556417 | Msa0561900:CDS | 40.0% |
| ! | GCTTTTGTTGGCAAAGGAAA+AGG | + | chr4_1:61556410-61556429 | Msa0561900:CDS | 40.0% |
| !! | GGGCAGTTTTGATCTAATAC+AGG | + | chr4_1:61556829-61556848 | Msa0561900:intron | 40.0% |
| GAATGAGCTGAAACTATTGG+TGG | + | chr4_1:61556913-61556932 | Msa0561900:CDS | 40.0% | |
| GAGGAAATCAAAAGACAGTG+AGG | + | chr4_1:61557057-61557076 | Msa0561900:CDS | 40.0% | |
| !! | AAGACAGTGAGGTTGATGTT+CGG | + | chr4_1:61557068-61557087 | Msa0561900:CDS | 40.0% |
| !! | TTGCTTGCTGTTTGTTTCCA+AGG | + | chr4_1:61557141-61557160 | Msa0561900:CDS | 40.0% |
| ! | GCTGTTTGTTTCCAAGGTTT+TGG | + | chr4_1:61557147-61557166 | Msa0561900:CDS | 40.0% |
| !! | GTTTGTTTCCAAGGTTTTGG+AGG | + | chr4_1:61557150-61557169 | Msa0561900:CDS | 40.0% |
| TTGGAACTTAACCATGTTGC+AGG | + | chr4_1:61557181-61557200 | Msa0561900:CDS | 40.0% | |
| ! | ATGAGGTGTTTCACTTATGC+AGG | + | chr4_1:61557322-61557341 | Msa0561900:intron | 40.0% |
| TCACTTATGCAGGTAACTGA+AGG | + | chr4_1:61557332-61557351 | Msa0561900:intron | 40.0% | |
| ATGCAAGTGCTATAGCAAAC+AGG | + | chr4_1:61557366-61557385 | Msa0561900:CDS | 40.0% | |
| TGCAAGTGCTATAGCAAACA+GGG | + | chr4_1:61557367-61557386 | Msa0561900:CDS | 40.0% | |
| AAACAGGGTGATTGATGTTC+TGG | + | chr4_1:61557382-61557401 | Msa0561900:CDS | 40.0% | |
| GATTCCAACACAATGGCAGA+AGG | + | chr4_1:61555609-61555628 | Msa0561900:CDS | 45.0% | |
| AACACCTTCTGCCATTGTGT+TGG | - | chr4_1:61555616-61555635 | None:intergenic | 45.0% | |
| !! | CCACTTGATTTGGCATGGTT+TGG | - | chr4_1:61555668-61555687 | None:intergenic | 45.0% |
| CCAAACCATGCCAAATCAAG+TGG | + | chr4_1:61555665-61555684 | Msa0561900:CDS | 45.0% | |
| !! | TGCAACCACTTGATTTGGCA+TGG | - | chr4_1:61555673-61555692 | None:intergenic | 45.0% |
| ATGCCAAATCAAGTGGTTGC+AGG | + | chr4_1:61555672-61555691 | Msa0561900:CDS | 45.0% | |
| AGAGAATTTCAGGCCTTCTG+TGG | + | chr4_1:61555716-61555735 | Msa0561900:CDS | 45.0% | |
| GAGAATTTCAGGCCTTCTGT+GGG | + | chr4_1:61555717-61555736 | Msa0561900:CDS | 45.0% | |
| !! | GAGACATCTTCAAGGTGTTG+TGG | - | chr4_1:61555789-61555808 | None:intergenic | 45.0% |
| AGTCCATATCCTGAGCACTA+GGG | - | chr4_1:61555947-61555966 | None:intergenic | 45.0% | |
| TAGTCCATATCCTGAGCACT+AGG | - | chr4_1:61555948-61555967 | None:intergenic | 45.0% | |
| TGAGGGTCTTGAATGGTTGA+GGG | - | chr4_1:61556023-61556042 | None:intergenic | 45.0% | |
| ATGAGGGTCTTGAATGGTTG+AGG | - | chr4_1:61556024-61556043 | None:intergenic | 45.0% | |
| AAGCTGAGGATCTAGGAAAG+TGG | - | chr4_1:61556076-61556095 | None:intergenic | 45.0% | |
| AGTTGTCTGAGCCTATTGGA+AGG | - | chr4_1:61556190-61556209 | None:intergenic | 45.0% | |
| ! | CTTGAGTTGTCTGAGCCTAT+TGG | - | chr4_1:61556194-61556213 | None:intergenic | 45.0% |
| ATAGGCTCAGACAACTCAAG+TGG | + | chr4_1:61556194-61556213 | Msa0561900:CDS | 45.0% | |
| AACTGTGCAGGAAGGTTCAT+AGG | - | chr4_1:61556248-61556267 | None:intergenic | 45.0% | |
| TAGGCATGCTATAGACGTGA+GGG | - | chr4_1:61556301-61556320 | None:intergenic | 45.0% | |
| ATAGCATGCCTACCAACTCA+AGG | + | chr4_1:61556309-61556328 | Msa0561900:CDS | 45.0% | |
| ATGCCTACCAACTCAAGGAA+TGG | + | chr4_1:61556314-61556333 | Msa0561900:CDS | 45.0% | |
| !! | GAACCATTCCTTGAGTTGGT+AGG | - | chr4_1:61556320-61556339 | None:intergenic | 45.0% |
| ACGAGAACCATTCCTTGAGT+TGG | - | chr4_1:61556324-61556343 | None:intergenic | 45.0% | |
| ! | AGGAATGGTTCTCGTTTTGG+TGG | + | chr4_1:61556329-61556348 | Msa0561900:CDS | 45.0% |
| !! | AATGGTTCTCGTTTTGGTGG+AGG | + | chr4_1:61556332-61556351 | Msa0561900:CDS | 45.0% |
| !! | ATGGTTCTCGTTTTGGTGGA+GGG | + | chr4_1:61556333-61556352 | Msa0561900:CDS | 45.0% |
| !! | GTCACTGCTTTTGTTGGCAA+AGG | + | chr4_1:61556404-61556423 | Msa0561900:CDS | 45.0% |
| GGAGAAGAAAAGACACGAGA+TGG | + | chr4_1:61556934-61556953 | Msa0561900:CDS | 45.0% | |
| ! | AGCTGTCACATGAAGCCTTT+TGG | + | chr4_1:61556998-61557017 | Msa0561900:CDS | 45.0% |
| !! | AAGCCTTTTGGTGATCCAGA+TGG | + | chr4_1:61557010-61557029 | Msa0561900:CDS | 45.0% |
| CTTCCATCTGGATCACCAAA+AGG | - | chr4_1:61557016-61557035 | None:intergenic | 45.0% | |
| ! | GTGATCCAGATGGAAGCATA+AGG | + | chr4_1:61557020-61557039 | Msa0561900:CDS | 45.0% |
| ! | ATGGAAGCATAAGGACCTCA+TGG | + | chr4_1:61557029-61557048 | Msa0561900:CDS | 45.0% |
| CTGAAGTTCCTCCAAAACCT+TGG | - | chr4_1:61557161-61557180 | Msa0561910:CDS | 45.0% | |
| !!! | GGTTTTGGAGGAACTTCAGT+TGG | + | chr4_1:61557162-61557181 | Msa0561900:CDS | 45.0% |
| GAACTTAACCATGTTGCAGG+TGG | + | chr4_1:61557184-61557203 | Msa0561900:CDS | 45.0% | |
| CAGCAGTTGTCCCACATAAT+AGG | + | chr4_1:61557417-61557436 | Msa0561900:CDS | 45.0% | |
| GATTCCAACACAATGGCAGA+AGG | + | chr4_1:61555609-61555628 | Msa0561900:CDS | 45.0% | |
| AACACCTTCTGCCATTGTGT+TGG | - | chr4_1:61555616-61555635 | None:intergenic | 45.0% | |
| !! | CCACTTGATTTGGCATGGTT+TGG | - | chr4_1:61555668-61555687 | None:intergenic | 45.0% |
| CCAAACCATGCCAAATCAAG+TGG | + | chr4_1:61555665-61555684 | Msa0561900:CDS | 45.0% | |
| !! | TGCAACCACTTGATTTGGCA+TGG | - | chr4_1:61555673-61555692 | None:intergenic | 45.0% |
| ATGCCAAATCAAGTGGTTGC+AGG | + | chr4_1:61555672-61555691 | Msa0561900:CDS | 45.0% | |
| AGAGAATTTCAGGCCTTCTG+TGG | + | chr4_1:61555716-61555735 | Msa0561900:CDS | 45.0% | |
| GAGAATTTCAGGCCTTCTGT+GGG | + | chr4_1:61555717-61555736 | Msa0561900:CDS | 45.0% | |
| !! | GAGACATCTTCAAGGTGTTG+TGG | - | chr4_1:61555789-61555808 | None:intergenic | 45.0% |
| AGTCCATATCCTGAGCACTA+GGG | - | chr4_1:61555947-61555966 | None:intergenic | 45.0% | |
| TAGTCCATATCCTGAGCACT+AGG | - | chr4_1:61555948-61555967 | None:intergenic | 45.0% | |
| TGAGGGTCTTGAATGGTTGA+GGG | - | chr4_1:61556023-61556042 | None:intergenic | 45.0% | |
| ATGAGGGTCTTGAATGGTTG+AGG | - | chr4_1:61556024-61556043 | None:intergenic | 45.0% | |
| AAGCTGAGGATCTAGGAAAG+TGG | - | chr4_1:61556076-61556095 | None:intergenic | 45.0% | |
| AGTTGTCTGAGCCTATTGGA+AGG | - | chr4_1:61556190-61556209 | None:intergenic | 45.0% | |
| ! | CTTGAGTTGTCTGAGCCTAT+TGG | - | chr4_1:61556194-61556213 | None:intergenic | 45.0% |
| ATAGGCTCAGACAACTCAAG+TGG | + | chr4_1:61556194-61556213 | Msa0561900:CDS | 45.0% | |
| AACTGTGCAGGAAGGTTCAT+AGG | - | chr4_1:61556248-61556267 | None:intergenic | 45.0% | |
| TAGGCATGCTATAGACGTGA+GGG | - | chr4_1:61556301-61556320 | None:intergenic | 45.0% | |
| ATAGCATGCCTACCAACTCA+AGG | + | chr4_1:61556309-61556328 | Msa0561900:CDS | 45.0% | |
| ATGCCTACCAACTCAAGGAA+TGG | + | chr4_1:61556314-61556333 | Msa0561900:CDS | 45.0% | |
| !! | GAACCATTCCTTGAGTTGGT+AGG | - | chr4_1:61556320-61556339 | None:intergenic | 45.0% |
| ACGAGAACCATTCCTTGAGT+TGG | - | chr4_1:61556324-61556343 | None:intergenic | 45.0% | |
| ! | AGGAATGGTTCTCGTTTTGG+TGG | + | chr4_1:61556329-61556348 | Msa0561900:CDS | 45.0% |
| !! | AATGGTTCTCGTTTTGGTGG+AGG | + | chr4_1:61556332-61556351 | Msa0561900:CDS | 45.0% |
| !! | ATGGTTCTCGTTTTGGTGGA+GGG | + | chr4_1:61556333-61556352 | Msa0561900:CDS | 45.0% |
| !! | GTCACTGCTTTTGTTGGCAA+AGG | + | chr4_1:61556404-61556423 | Msa0561900:CDS | 45.0% |
| GGAGAAGAAAAGACACGAGA+TGG | + | chr4_1:61556934-61556953 | Msa0561900:CDS | 45.0% | |
| ! | AGCTGTCACATGAAGCCTTT+TGG | + | chr4_1:61556998-61557017 | Msa0561900:CDS | 45.0% |
| !! | AAGCCTTTTGGTGATCCAGA+TGG | + | chr4_1:61557010-61557029 | Msa0561900:CDS | 45.0% |
| CTTCCATCTGGATCACCAAA+AGG | - | chr4_1:61557016-61557035 | None:intergenic | 45.0% | |
| ! | GTGATCCAGATGGAAGCATA+AGG | + | chr4_1:61557020-61557039 | Msa0561900:CDS | 45.0% |
| ! | ATGGAAGCATAAGGACCTCA+TGG | + | chr4_1:61557029-61557048 | Msa0561900:CDS | 45.0% |
| CTGAAGTTCCTCCAAAACCT+TGG | - | chr4_1:61557161-61557180 | Msa0561910:CDS | 45.0% | |
| !!! | GGTTTTGGAGGAACTTCAGT+TGG | + | chr4_1:61557162-61557181 | Msa0561900:CDS | 45.0% |
| GAACTTAACCATGTTGCAGG+TGG | + | chr4_1:61557184-61557203 | Msa0561900:CDS | 45.0% | |
| CAGCAGTTGTCCCACATAAT+AGG | + | chr4_1:61557417-61557436 | Msa0561900:CDS | 45.0% | |
| ! | GTTGTGAGGCAAATGGTGGA+TGG | - | chr4_1:61556116-61556135 | None:intergenic | 50.0% |
| AGTTGGGGTTGTGAGGCAAA+TGG | - | chr4_1:61556123-61556142 | None:intergenic | 50.0% | |
| !!! | GCTTTTGAGTTGGGGTTGTG+AGG | - | chr4_1:61556130-61556149 | None:intergenic | 50.0% |
| GAACCTTCCTGCACAGTTTC+CGG | + | chr4_1:61556250-61556269 | Msa0561900:CDS | 50.0% | |
| ! | TGAGGCAATTCTCTAAGGGC+CGG | - | chr4_1:61556272-61556291 | None:intergenic | 50.0% |
| TAGACGTGAGGGAGAGATTG+AGG | - | chr4_1:61556290-61556309 | None:intergenic | 50.0% | |
| GTAGGCATGCTATAGACGTG+AGG | - | chr4_1:61556302-61556321 | None:intergenic | 50.0% | |
| !! | TGGTTCTCGTTTTGGTGGAG+GGG | + | chr4_1:61556334-61556353 | Msa0561900:CDS | 50.0% |
| ! | TTTTGGTGGAGGGGATGAGA+TGG | + | chr4_1:61556343-61556362 | Msa0561900:CDS | 50.0% |
| ! | ATGGAGGGAGATGGAGGTAT+GGG | + | chr4_1:61556362-61556381 | Msa0561900:CDS | 50.0% |
| ! | AGATGGAGGTATGGGAGTGT+CGG | + | chr4_1:61556370-61556389 | Msa0561900:CDS | 50.0% |
| !! | GGGAGTGTCGGAATTCAACA+AGG | + | chr4_1:61556382-61556401 | Msa0561900:CDS | 50.0% |
| ! | ACAGGATGACAGAGCATCAG+TGG | + | chr4_1:61556847-61556866 | Msa0561900:intron | 50.0% |
| ! | GATGACAGAGCATCAGTGGT+CGG | + | chr4_1:61556851-61556870 | Msa0561900:CDS | 50.0% |
| GAGGTCCTTATGCTTCCATC+TGG | - | chr4_1:61557028-61557047 | None:intergenic | 50.0% | |
| TGATTTCCTCTGCAGCCATG+AGG | - | chr4_1:61557047-61557066 | None:intergenic | 50.0% | |
| CAACATGTCCACCTGCAACA+TGG | - | chr4_1:61557195-61557214 | Msa0561910:CDS | 50.0% | |
| CATGTTGCAGGTGGACATGT+TGG | + | chr4_1:61557193-61557212 | Msa0561900:CDS | 50.0% | |
| ! | GTTGTGAGGCAAATGGTGGA+TGG | - | chr4_1:61556116-61556135 | None:intergenic | 50.0% |
| AGTTGGGGTTGTGAGGCAAA+TGG | - | chr4_1:61556123-61556142 | None:intergenic | 50.0% | |
| !!! | GCTTTTGAGTTGGGGTTGTG+AGG | - | chr4_1:61556130-61556149 | None:intergenic | 50.0% |
| GAACCTTCCTGCACAGTTTC+CGG | + | chr4_1:61556250-61556269 | Msa0561900:CDS | 50.0% | |
| ! | TGAGGCAATTCTCTAAGGGC+CGG | - | chr4_1:61556272-61556291 | None:intergenic | 50.0% |
| TAGACGTGAGGGAGAGATTG+AGG | - | chr4_1:61556290-61556309 | None:intergenic | 50.0% | |
| GTAGGCATGCTATAGACGTG+AGG | - | chr4_1:61556302-61556321 | None:intergenic | 50.0% | |
| !! | TGGTTCTCGTTTTGGTGGAG+GGG | + | chr4_1:61556334-61556353 | Msa0561900:CDS | 50.0% |
| ! | TTTTGGTGGAGGGGATGAGA+TGG | + | chr4_1:61556343-61556362 | Msa0561900:CDS | 50.0% |
| ! | ATGGAGGGAGATGGAGGTAT+GGG | + | chr4_1:61556362-61556381 | Msa0561900:CDS | 50.0% |
| ! | AGATGGAGGTATGGGAGTGT+CGG | + | chr4_1:61556370-61556389 | Msa0561900:CDS | 50.0% |
| !! | GGGAGTGTCGGAATTCAACA+AGG | + | chr4_1:61556382-61556401 | Msa0561900:CDS | 50.0% |
| ! | ACAGGATGACAGAGCATCAG+TGG | + | chr4_1:61556847-61556866 | Msa0561900:intron | 50.0% |
| ! | GATGACAGAGCATCAGTGGT+CGG | + | chr4_1:61556851-61556870 | Msa0561900:CDS | 50.0% |
| GAGGTCCTTATGCTTCCATC+TGG | - | chr4_1:61557028-61557047 | None:intergenic | 50.0% | |
| TGATTTCCTCTGCAGCCATG+AGG | - | chr4_1:61557047-61557066 | None:intergenic | 50.0% | |
| CAACATGTCCACCTGCAACA+TGG | - | chr4_1:61557195-61557214 | Msa0561910:CDS | 50.0% | |
| CATGTTGCAGGTGGACATGT+TGG | + | chr4_1:61557193-61557212 | Msa0561900:CDS | 50.0% | |
| GGACCCTAGTGCTCAGGATA+TGG | + | chr4_1:61555941-61555960 | Msa0561900:CDS | 55.0% | |
| TGGGGTTGTGAGGCAAATGG+TGG | - | chr4_1:61556120-61556139 | None:intergenic | 55.0% | |
| GATGAGATGGAGGGAGATGG+AGG | + | chr4_1:61556356-61556375 | Msa0561900:CDS | 55.0% | |
| GATGGAGGGAGATGGAGGTA+TGG | + | chr4_1:61556361-61556380 | Msa0561900:CDS | 55.0% | |
| TAAGGACCTCATGGCTGCAG+AGG | + | chr4_1:61557038-61557057 | Msa0561900:CDS | 55.0% | |
| GGACCCTAGTGCTCAGGATA+TGG | + | chr4_1:61555941-61555960 | Msa0561900:CDS | 55.0% | |
| TGGGGTTGTGAGGCAAATGG+TGG | - | chr4_1:61556120-61556139 | None:intergenic | 55.0% | |
| GATGAGATGGAGGGAGATGG+AGG | + | chr4_1:61556356-61556375 | Msa0561900:CDS | 55.0% | |
| GATGGAGGGAGATGGAGGTA+TGG | + | chr4_1:61556361-61556380 | Msa0561900:CDS | 55.0% | |
| TAAGGACCTCATGGCTGCAG+AGG | + | chr4_1:61557038-61557057 | Msa0561900:CDS | 55.0% | |
| GAGTTGGGACCCTAGTGCTC+AGG | + | chr4_1:61555935-61555954 | Msa0561900:CDS | 60.0% | |
| CTAAGGGCCGGAAACTGTGC+AGG | - | chr4_1:61556260-61556279 | None:intergenic | 60.0% | |
| TGGTGGAGGGGATGAGATGG+AGG | + | chr4_1:61556346-61556365 | Msa0561900:CDS | 60.0% | |
| GGTGGAGGGGATGAGATGGA+GGG | + | chr4_1:61556347-61556366 | Msa0561900:CDS | 60.0% | |
| GGGGATGAGATGGAGGGAGA+TGG | + | chr4_1:61556353-61556372 | Msa0561900:CDS | 60.0% | |
| GAGTTGGGACCCTAGTGCTC+AGG | + | chr4_1:61555935-61555954 | Msa0561900:CDS | 60.0% | |
| CTAAGGGCCGGAAACTGTGC+AGG | - | chr4_1:61556260-61556279 | None:intergenic | 60.0% | |
| TGGTGGAGGGGATGAGATGG+AGG | + | chr4_1:61556346-61556365 | Msa0561900:CDS | 60.0% | |
| GGTGGAGGGGATGAGATGGA+GGG | + | chr4_1:61556347-61556366 | Msa0561900:CDS | 60.0% | |
| GGGGATGAGATGGAGGGAGA+TGG | + | chr4_1:61556353-61556372 | Msa0561900:CDS | 60.0% | |
| GGGCCGGAAACTGTGCAGGA+AGG | - | chr4_1:61556256-61556275 | None:intergenic | 65.0% | |
| GGGCCGGAAACTGTGCAGGA+AGG | - | chr4_1:61556256-61556275 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 61555555 | 61557445 | 61555555 | ID=Msa0561900;Name=Msa0561900 |
| chr4_1 | mRNA | 61555555 | 61557445 | 61555555 | ID=Msa0561900-mRNA-1;Parent=Msa0561900;Name=Msa0561900-mRNA-1;_AED=0.01;_eAED=0.03;_QI=0|0.5|0|1|1|1|3|0|490 |
| chr4_1 | exon | 61555555 | 61556529 | 61555555 | ID=Msa0561900-mRNA-1:exon:19315;Parent=Msa0561900-mRNA-1 |
| chr4_1 | exon | 61556851 | 61557246 | 61556851 | ID=Msa0561900-mRNA-1:exon:19316;Parent=Msa0561900-mRNA-1 |
| chr4_1 | exon | 61557344 | 61557445 | 61557344 | ID=Msa0561900-mRNA-1:exon:19317;Parent=Msa0561900-mRNA-1 |
| chr4_1 | CDS | 61555555 | 61556529 | 61555555 | ID=Msa0561900-mRNA-1:cds;Parent=Msa0561900-mRNA-1 |
| chr4_1 | CDS | 61556851 | 61557246 | 61556851 | ID=Msa0561900-mRNA-1:cds;Parent=Msa0561900-mRNA-1 |
| chr4_1 | CDS | 61557344 | 61557445 | 61557344 | ID=Msa0561900-mRNA-1:cds;Parent=Msa0561900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
