Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655420 | RHN62931.1 | 94.898 | 490 | 18 | 2 | 1 | 490 | 1 | 483 | 0.0 | 960 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655420 | sp|Q84TK1|BH010_ARATH | 35.135 | 518 | 219 | 15 | 15 | 488 | 12 | 456 | 4.09e-72 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655420 | A0A396IDL8 | 94.898 | 490 | 18 | 2 | 1 | 490 | 1 | 483 | 0.0 | 960 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0655420 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0561900 | Msa0655420 | 0.828555 | 8.421807e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655420 | MtrunA17_Chr4g0052821 | 94.898 | 490 | 18 | 2 | 1 | 490 | 1 | 483 | 0.0 | 960 |
| Msa0655420 | MtrunA17_Chr4g0052841 | 75.649 | 501 | 89 | 8 | 1 | 487 | 1 | 482 | 0.0 | 673 |
| Msa0655420 | MtrunA17_Chr3g0131691 | 27.801 | 241 | 139 | 6 | 263 | 475 | 243 | 476 | 2.95e-17 | 84.3 |
| Msa0655420 | MtrunA17_Chr0c01g0489461 | 25.641 | 195 | 128 | 3 | 298 | 477 | 197 | 389 | 3.30e-14 | 74.3 |
| Msa0655420 | MtrunA17_Chr1g0185621 | 31.613 | 155 | 97 | 4 | 290 | 438 | 463 | 614 | 2.78e-12 | 69.3 |
| Msa0655420 | MtrunA17_Chr8g0366751 | 29.677 | 155 | 104 | 2 | 291 | 442 | 456 | 608 | 3.91e-11 | 65.5 |
| Msa0655420 | MtrunA17_Chr5g0411341 | 28.571 | 196 | 124 | 5 | 291 | 476 | 487 | 676 | 6.16e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655420 | AT2G31220.1 | 35.203 | 517 | 218 | 15 | 16 | 488 | 2 | 445 | 2.80e-73 | 239 |
| Msa0655420 | AT2G31220.2 | 35.135 | 518 | 219 | 15 | 15 | 488 | 12 | 456 | 4.16e-73 | 238 |
| Msa0655420 | AT2G31210.1 | 33.728 | 507 | 224 | 15 | 11 | 487 | 1 | 425 | 4.85e-71 | 232 |
| Msa0655420 | AT1G06170.2 | 40.278 | 360 | 152 | 9 | 144 | 488 | 100 | 411 | 9.96e-71 | 231 |
| Msa0655420 | AT1G06170.1 | 40.278 | 360 | 152 | 9 | 144 | 488 | 100 | 411 | 9.96e-71 | 231 |
| Msa0655420 | AT1G32640.1 | 29.814 | 161 | 86 | 5 | 291 | 442 | 446 | 588 | 5.50e-14 | 75.1 |
| Msa0655420 | AT5G46760.1 | 32.903 | 155 | 92 | 4 | 291 | 442 | 409 | 554 | 2.46e-12 | 69.7 |
| Msa0655420 | AT4G17880.1 | 30.921 | 152 | 95 | 2 | 291 | 442 | 410 | 551 | 5.25e-12 | 68.6 |
| Msa0655420 | AT3G24140.1 | 25.373 | 201 | 133 | 4 | 298 | 482 | 199 | 398 | 5.90e-12 | 67.8 |
| Msa0655420 | AT3G24140.2 | 25.373 | 201 | 133 | 4 | 298 | 482 | 199 | 398 | 7.23e-12 | 67.4 |
| Msa0655420 | AT1G12860.2 | 25.882 | 170 | 108 | 3 | 296 | 458 | 266 | 424 | 1.66e-11 | 66.6 |
| Msa0655420 | AT5G65640.1 | 29.480 | 173 | 104 | 4 | 290 | 462 | 171 | 325 | 2.00e-11 | 65.9 |
| Msa0655420 | AT1G12860.1 | 25.253 | 198 | 127 | 5 | 296 | 485 | 266 | 450 | 4.79e-11 | 65.1 |
| Msa0655420 | AT3G26744.1 | 25.616 | 203 | 124 | 6 | 296 | 485 | 306 | 494 | 6.00e-11 | 65.1 |
| Msa0655420 | AT3G26744.4 | 25.616 | 203 | 124 | 6 | 296 | 485 | 306 | 494 | 6.00e-11 | 65.1 |
| Msa0655420 | AT3G26744.2 | 25.616 | 203 | 124 | 6 | 296 | 485 | 306 | 494 | 6.00e-11 | 65.1 |
| Msa0655420 | AT2G31215.1 | 50.725 | 69 | 33 | 1 | 289 | 357 | 16 | 83 | 6.52e-11 | 60.5 |
Find 123 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTTACTTTGGTGGAATT+TGG | 0.152678 | 4_3:-64045602 | Msa0655410:intron |
| CAGTTTGCTCATGCATATTT+TGG | 0.176939 | 4_3:-64044665 | Msa0655410:intron |
| AGGGATTGTAGCTTTGTTTA+TGG | 0.188979 | 4_3:-64045088 | Msa0655410:intron |
| CACTTGATTTGGCATGGTTT+GGG | 0.215941 | 4_3:-64044751 | Msa0655410:intron |
| CAACAACATGGATAACATTT+TGG | 0.230373 | 4_3:+64044977 | Msa0655420:CDS |
| GAACCTTCCTGCACAGTTTC+CGG | 0.273029 | 4_3:+64045337 | Msa0655420:CDS |
| CCACTTGATTTGGCATGGTT+TGG | 0.275899 | 4_3:-64044752 | Msa0655410:intron |
| TGTGTAGTTGGTGGTATTCT+TGG | 0.280012 | 4_3:-64045064 | Msa0655410:intron |
| GCTGTTTGTTTCCAAGGTTT+TGG | 0.282123 | 4_3:+64046232 | Msa0655420:CDS |
| ATAGCATTGAAGAGAATTTC+AGG | 0.287093 | 4_3:+64044793 | Msa0655420:CDS |
| TCAAGGAATGGTTCTCGTTT+TGG | 0.293055 | 4_3:+64045413 | Msa0655420:CDS |
| AGACCAATGAGTTCAGTTTC+AGG | 0.294029 | 4_3:+64044636 | None:intergenic |
| TATTTACTTTGGTGGAATTT+GGG | 0.298058 | 4_3:-64045601 | Msa0655410:intron |
| CTCATCGAGTAATGGAAATT+AGG | 0.322097 | 4_3:-64045239 | Msa0655410:intron |
| TTACCTGCAACCACTTGATT+TGG | 0.325403 | 4_3:-64044762 | Msa0655410:intron |
| TGGGGAGAGTTATTATCTTC+TGG | 0.329534 | 4_3:-64044732 | Msa0655410:intron |
| TTTGTTTATGGTTGTGTAGT+TGG | 0.331934 | 4_3:-64045076 | Msa0655410:intron |
| CAGCAGTTGTCCCACATAAT+AGG | 0.332222 | 4_3:+64046502 | Msa0655420:CDS |
| GAGATTGAGGCAATTCTCTA+AGG | 0.339121 | 4_3:-64045361 | Msa0655410:intron |
| AGCTGTCACATGAAGCCTTT+TGG | 0.351110 | 4_3:+64046083 | Msa0655420:CDS |
| CTTGAGTTGTCTGAGCCTAT+TGG | 0.353217 | 4_3:-64045278 | Msa0655410:intron |
| AACATTGCACAACAAAATCT+TGG | 0.361426 | 4_3:+64044930 | Msa0655420:CDS |
| GGACCCTAGTGCTCAGGATA+TGG | 0.374887 | 4_3:+64045028 | Msa0655420:CDS |
| TTGGAACTTAACCATGTTGC+AGG | 0.378869 | 4_3:+64046266 | Msa0655420:CDS |
| TTGCTTGCTGTTTGTTTCCA+AGG | 0.384323 | 4_3:+64046226 | Msa0655420:CDS |
| TATCAACCTTGCTATTGAAC+AGG | 0.396384 | 4_3:-64046316 | Msa0655410:intron |
| TTGGTGGTATTCTTGGTGAT+TGG | 0.402907 | 4_3:-64045057 | Msa0655410:intron |
| ATGAGGGTCTTGAATGGTTG+AGG | 0.403582 | 4_3:-64045108 | Msa0655410:intron |
| TTTATTGTTATTTACTTTGG+TGG | 0.406527 | 4_3:-64045609 | Msa0655410:intron |
| CAAAATATGCATGAGCAAAC+TGG | 0.407375 | 4_3:+64044666 | Msa0655420:CDS |
| CAAAATCTTGGTTTGAACAT+AGG | 0.414981 | 4_3:+64044942 | Msa0655420:CDS |
| TGGTGAAGATTTAGTACATC+TGG | 0.421373 | 4_3:-64045140 | Msa0655410:intron |
| ATGGAGGGAGATGGAGGTAT+GGG | 0.422492 | 4_3:+64045449 | Msa0655420:CDS |
| GGGGATGAGATGGAGGGAGA+TGG | 0.422522 | 4_3:+64045440 | Msa0655420:CDS |
| ATGCAAGTGCTATAGCAAAC+AGG | 0.424664 | 4_3:+64046451 | Msa0655420:CDS |
| ATAGATGAAGCTGAGGATCT+AGG | 0.426468 | 4_3:-64045167 | Msa0655410:intron |
| GATGGAGGGAGATGGAGGTA+TGG | 0.426821 | 4_3:+64045448 | Msa0655420:CDS |
| ATGCCAAATCAAGTGGTTGC+AGG | 0.427884 | 4_3:+64044759 | Msa0655420:CDS |
| TTTCTTGGAGACCTTCCAAT+AGG | 0.433519 | 4_3:+64045263 | Msa0655420:CDS |
| AAAATCTTGGTTTGAACATA+GGG | 0.440034 | 4_3:+64044943 | Msa0655420:CDS |
| AAACAGGGTGATTGATGTTC+TGG | 0.444364 | 4_3:+64046467 | Msa0655420:CDS |
| TGGTGGAGGGGATGAGATGG+AGG | 0.452096 | 4_3:+64045433 | Msa0655420:CDS |
| GATGTCTCCACTTATACAAA+TGG | 0.460153 | 4_3:+64044888 | Msa0655420:CDS |
| GAGGTCCTTATGCTTCCATC+TGG | 0.463883 | 4_3:-64046110 | Msa0655410:intron |
| AGTGAATCCATTTGTATAAG+TGG | 0.466255 | 4_3:-64044895 | Msa0655410:intron |
| AGACATCTTCAAGGTGTTGT+GGG | 0.477092 | 4_3:-64044872 | Msa0655410:intron |
| ACAACCTACATCCTATTATG+TGG | 0.478099 | 4_3:-64046513 | Msa0655410:intron |
| GATGAGATGGAGGGAGATGG+AGG | 0.485707 | 4_3:+64045443 | Msa0655420:CDS |
| CAAACTGTTTCAGAGAAAGA+AGG | 0.486584 | 4_3:+64046199 | Msa0655420:CDS |
| AACTGTGCAGGAAGGTTCAT+AGG | 0.487200 | 4_3:-64045332 | Msa0655410:intron |
| AGTTGGGGTTGTGATGCAAA+TGG | 0.488283 | 4_3:-64045207 | Msa0655410:intron |
| ACAAAGAAGAGAGCAATTGA+AGG | 0.497369 | 4_3:+64045550 | Msa0655420:CDS |
| CTAAGGGCCGGAAACTGTGC+AGG | 0.501150 | 4_3:-64045344 | Msa0655410:intron |
| TGAGGGTCTTGAATGGTTGA+GGG | 0.501208 | 4_3:-64045107 | Msa0655410:intron |
| CAAGAAAACTCATCGAGTAA+TGG | 0.504530 | 4_3:-64045247 | Msa0655410:intron |
| TGCAACCACTTGATTTGGCA+TGG | 0.510199 | 4_3:-64044757 | Msa0655410:intron |
| CTTCCATCTGGATCACCAAA+AGG | 0.510562 | 4_3:-64046098 | Msa0655410:intron |
| AGATGGAGGTATGGGAGTGT+CGG | 0.512294 | 4_3:+64045457 | Msa0655420:CDS |
| GGAAGGTTCATAGGAAATAG+AGG | 0.514568 | 4_3:-64045323 | Msa0655410:intron |
| GAGACATCTTCAAGGTGTTG+TGG | 0.514897 | 4_3:-64044873 | Msa0655410:intron |
| CTGAAGTTCCTCCAAAACCT+TGG | 0.519653 | 4_3:-64046243 | Msa0655410:intron |
| TAGTTTCCTGTTCAATAGCA+AGG | 0.522557 | 4_3:+64046310 | Msa0655420:CDS |
| ACGAGAACCATTCCTTGAGT+TGG | 0.523595 | 4_3:-64045408 | Msa0655410:intron |
| TCTCCTGAAACTGAACTCAT+TGG | 0.525396 | 4_3:-64044639 | Msa0655410:intron |
| AGTGAATGAGCTGAAACTAT+TGG | 0.528670 | 4_3:+64045995 | Msa0655420:CDS |
| GGTGTATCAGAATTCGAGTT+GGG | 0.534079 | 4_3:+64045007 | Msa0655420:CDS |
| TAGTCCATATCCTGAGCACT+AGG | 0.537172 | 4_3:-64045032 | Msa0655410:intron |
| GTTTATGGTTGTGTAGTTGG+TGG | 0.542610 | 4_3:-64045073 | Msa0655410:intron |
| AGAGAATTTCAGGCCTTCTG+TGG | 0.547008 | 4_3:+64044803 | Msa0655420:CDS |
| TAGACGTGAGGGAGAGATTG+AGG | 0.548170 | 4_3:-64045374 | Msa0655410:intron |
| GTTGTGATGCAAATGGTGGA+TGG | 0.549380 | 4_3:-64045200 | Msa0655410:intron |
| TATAAGTGGAGACATCTTCA+AGG | 0.550747 | 4_3:-64044881 | Msa0655410:intron |
| AAGACAGTGAGGTTGATGTT+CGG | 0.551962 | 4_3:+64046153 | Msa0655420:CDS |
| GAGTTGGGACCCTAGTGCTC+AGG | 0.552970 | 4_3:+64045022 | Msa0655420:CDS |
| AACACCTTCTGCCATTGTGT+CGG | 0.553819 | 4_3:-64044700 | Msa0655410:intron |
| GTGATCCAGATGGAAGCATA+AGG | 0.554959 | 4_3:+64046105 | Msa0655420:CDS |
| ACATCTGGTGAAGGATAATG+AGG | 0.556346 | 4_3:-64045125 | Msa0655410:intron |
| GGTGGAGGGGATGAGATGGA+GGG | 0.559231 | 4_3:+64045434 | Msa0655420:CDS |
| GGAGAAGAAAAGACACGAGA+TGG | 0.559458 | 4_3:+64046019 | Msa0655420:CDS |
| TGAGGCAATTCTCTAAGGGC+CGG | 0.565775 | 4_3:-64045356 | Msa0655410:intron |
| ACTTGATTTGGCATGGTTTG+GGG | 0.567633 | 4_3:-64044750 | Msa0655410:intron |
| GAACCATTCCTTGAGTTGGT+AGG | 0.569140 | 4_3:-64045404 | Msa0655410:intron |
| ATGGAAGCATAAGGACCTCA+TGG | 0.569401 | 4_3:+64046114 | Msa0655420:CDS |
| TCACTTATGCAGGTAACTGA+AGG | 0.570501 | 4_3:+64046417 | Msa0655420:intron |
| GAGAATTTCAGGCCTTCTGT+GGG | 0.572554 | 4_3:+64044804 | Msa0655420:CDS |
| TCAAAATCTCTTCCCACAGA+AGG | 0.573360 | 4_3:-64044816 | Msa0655410:intron |
| CCAAACCATGCCAAATCAAG+TGG | 0.578899 | 4_3:+64044752 | Msa0655420:CDS |
| TGTCCCACATAATAGGATGT+AGG | 0.580034 | 4_3:+64046509 | Msa0655420:CDS |
| AGGATAATGAGGGTCTTGAA+TGG | 0.581908 | 4_3:-64045114 | Msa0655410:intron |
| TGGGGTTGTGATGCAAATGG+TGG | 0.587727 | 4_3:-64045204 | Msa0655410:intron |
| CAACCTACATCCTATTATGT+GGG | 0.595003 | 4_3:-64046512 | Msa0655410:intron |
| GATTCCGACACAATGGCAGA+AGG | 0.597510 | 4_3:+64044696 | Msa0655420:CDS |
| ATGCCTACCAACTCAAGGAA+TGG | 0.597546 | 4_3:+64045401 | Msa0655420:CDS |
| CAAAGAAGAGAGCAATTGAA+GGG | 0.598165 | 4_3:+64045551 | Msa0655420:CDS |
| TAAGGACCTCATGGCTGCAG+AGG | 0.598266 | 4_3:+64046123 | Msa0655420:CDS |
| TGATTTCCTCTGCAGCCATG+AGG | 0.604351 | 4_3:-64046129 | Msa0655410:intron |
| AAGCTGAGGATCTAGGAAAG+TGG | 0.606657 | 4_3:-64045160 | Msa0655410:intron |
| GAACTTAACCATGTTGCAGG+TGG | 0.608004 | 4_3:+64046269 | Msa0655420:CDS |
| AGATTGAGGCAATTCTCTAA+GGG | 0.609395 | 4_3:-64045360 | Msa0655410:intron |
| AGTTGTCTGAGCCTATTGGA+AGG | 0.611422 | 4_3:-64045274 | Msa0655410:intron |
| ACAGGATGACAGAGCATCAG+TGG | 0.612086 | 4_3:+64045932 | Msa0655420:intron |
| CAACATGTCCACCTGCAACA+TGG | 0.612887 | 4_3:-64046277 | Msa0655410:intron |
| CATGTTGCAGGTGGACATGT+TGG | 0.614636 | 4_3:+64046278 | Msa0655420:CDS |
| TGCAAGTGCTATAGCAAACA+GGG | 0.617014 | 4_3:+64046452 | Msa0655420:CDS |
| ATAGCATGCCTACCAACTCA+AGG | 0.617097 | 4_3:+64045396 | Msa0655420:CDS |
| TGTGAGAATAGATGAAGCTG+AGG | 0.619586 | 4_3:-64045174 | Msa0655410:intron |
| AGATTTAGTACATCTGGTGA+AGG | 0.621346 | 4_3:-64045134 | Msa0655410:intron |
| GAATGAGCTGAAACTATTGG+TGG | 0.621989 | 4_3:+64045998 | Msa0655420:CDS |
| AGGTGTATCAGAATTCGAGT+TGG | 0.627894 | 4_3:+64045006 | Msa0655420:CDS |
| AGGGAAGATACAAAATCTTG+AGG | 0.628748 | 4_3:+64045570 | Msa0655420:CDS |
| ATAGGCTCAGACAACTCAAG+TGG | 0.630249 | 4_3:+64045281 | Msa0655420:CDS |
| ATCGAGTAATGGAAATTAGG+TGG | 0.631613 | 4_3:-64045236 | Msa0655410:intron |
| GATGACAGAGCATCAGTGGT+CGG | 0.636237 | 4_3:+64045936 | Msa0655420:CDS |
| GGGCCGGAAACTGTGCAGGA+AGG | 0.638113 | 4_3:-64045340 | Msa0655410:intron |
| AGTCCATATCCTGAGCACTA+GGG | 0.638599 | 4_3:-64045031 | Msa0655410:intron |
| GGGAGTGTCGGAATTCAACA+AGG | 0.647586 | 4_3:+64045469 | Msa0655420:CDS |
| TAGGCATGCTATAGACGTGA+GGG | 0.648613 | 4_3:-64045385 | Msa0655410:intron |
| AGCTACAGAACATTTGACAA+CGG | 0.658358 | 4_3:+64045523 | Msa0655420:CDS |
| GTAGGCATGCTATAGACGTG+AGG | 0.659082 | 4_3:-64045386 | Msa0655410:intron |
| TTGCTTTGATTCCGACACAA+TGG | 0.659636 | 4_3:+64044689 | Msa0655420:CDS |
| CATCTGGTGAAGGATAATGA+GGG | 0.694690 | 4_3:-64045124 | Msa0655410:intron |
| GAACTACTACTACAACAACA+TGG | 0.699767 | 4_3:+64044965 | Msa0655420:CDS |
| GAGGAAATCAAAAGACAGTG+AGG | 0.707672 | 4_3:+64046142 | Msa0655420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATTGTTATTTACTT+TGG | - | chr4_3:64045615-64045634 | Msa0655410:intron | 10.0% |
| !!! | AATTTTATAAAGTATTTACT+TGG | - | chr4_3:64046345-64046364 | Msa0655410:intron | 10.0% |
| !!! | TTATTTATTGTTATTTACTT+TGG | - | chr4_3:64045615-64045634 | Msa0655410:intron | 10.0% |
| !!! | AATTTTATAAAGTATTTACT+TGG | - | chr4_3:64046345-64046364 | Msa0655410:intron | 10.0% |
| !! | TTCATAGATATAATTAGATA+TGG | - | chr4_3:64045657-64045676 | Msa0655410:intron | 15.0% |
| !!! | TTAAATCTTGAATTATTTTG+AGG | + | chr4_3:64045718-64045737 | Msa0655420:intron | 15.0% |
| !! | GTTAAAAATGACATTATTAT+TGG | + | chr4_3:64045791-64045810 | Msa0655420:intron | 15.0% |
| !! | ATAAGATTCAAATCATTATT+TGG | + | chr4_3:64045835-64045854 | Msa0655420:intron | 15.0% |
| !! | ACCATGATTTAAATAATTAA+CGG | + | chr4_3:64045893-64045912 | Msa0655420:intron | 15.0% |
| !! | TAGATTTATTACATTTGATT+TGG | + | chr4_3:64046371-64046390 | Msa0655420:intron | 15.0% |
| !! | TTCATAGATATAATTAGATA+TGG | - | chr4_3:64045657-64045676 | Msa0655410:intron | 15.0% |
| !!! | TTAAATCTTGAATTATTTTG+AGG | + | chr4_3:64045718-64045737 | Msa0655420:intron | 15.0% |
| !! | GTTAAAAATGACATTATTAT+TGG | + | chr4_3:64045791-64045810 | Msa0655420:intron | 15.0% |
| !! | ATAAGATTCAAATCATTATT+TGG | + | chr4_3:64045835-64045854 | Msa0655420:intron | 15.0% |
| !! | ACCATGATTTAAATAATTAA+CGG | + | chr4_3:64045893-64045912 | Msa0655420:intron | 15.0% |
| !! | TAGATTTATTACATTTGATT+TGG | + | chr4_3:64046371-64046390 | Msa0655420:intron | 15.0% |
| !!! | TTTATTGTTATTTACTTTGG+TGG | - | chr4_3:64045612-64045631 | Msa0655410:intron | 20.0% |
| !! | CCATGATTTAAATAATTAAC+GGG | + | chr4_3:64045894-64045913 | Msa0655420:intron | 20.0% |
| !! | TTGGTTATATATTAACTATG+AGG | + | chr4_3:64046390-64046409 | Msa0655420:intron | 20.0% |
| !!! | TTTATTGTTATTTACTTTGG+TGG | - | chr4_3:64045612-64045631 | Msa0655410:intron | 20.0% |
| !! | CCATGATTTAAATAATTAAC+GGG | + | chr4_3:64045894-64045913 | Msa0655420:intron | 20.0% |
| !! | TTGGTTATATATTAACTATG+AGG | + | chr4_3:64046390-64046409 | Msa0655420:intron | 20.0% |
| !! | AAAATCTTGGTTTGAACATA+GGG | + | chr4_3:64044943-64044962 | Msa0655420:CDS | 25.0% |
| ! | TATTTACTTTGGTGGAATTT+GGG | - | chr4_3:64045604-64045623 | Msa0655410:intron | 25.0% |
| ! | TTATTTACTTTGGTGGAATT+TGG | - | chr4_3:64045605-64045624 | Msa0655410:intron | 25.0% |
| ! | CCCGTTAATTATTTAAATCA+TGG | - | chr4_3:64045897-64045916 | Msa0655410:intron | 25.0% |
| !! | AAAATCTTGGTTTGAACATA+GGG | + | chr4_3:64044943-64044962 | Msa0655420:CDS | 25.0% |
| ! | TATTTACTTTGGTGGAATTT+GGG | - | chr4_3:64045604-64045623 | Msa0655410:intron | 25.0% |
| ! | TTATTTACTTTGGTGGAATT+TGG | - | chr4_3:64045605-64045624 | Msa0655410:intron | 25.0% |
| ! | CCCGTTAATTATTTAAATCA+TGG | - | chr4_3:64045897-64045916 | Msa0655410:intron | 25.0% |
| ! | ATAGCATTGAAGAGAATTTC+AGG | + | chr4_3:64044793-64044812 | Msa0655420:CDS | 30.0% |
| AGTGAATCCATTTGTATAAG+TGG | - | chr4_3:64044898-64044917 | Msa0655410:intron | 30.0% | |
| AACATTGCACAACAAAATCT+TGG | + | chr4_3:64044930-64044949 | Msa0655420:CDS | 30.0% | |
| ! | CAAAATCTTGGTTTGAACAT+AGG | + | chr4_3:64044942-64044961 | Msa0655420:CDS | 30.0% |
| ! | CAACAACATGGATAACATTT+TGG | + | chr4_3:64044977-64044996 | Msa0655420:CDS | 30.0% |
| TTTGTTTATGGTTGTGTAGT+TGG | - | chr4_3:64045079-64045098 | Msa0655410:intron | 30.0% | |
| ATCTAATGACAAAAGCAAAG+TGG | - | chr4_3:64045691-64045710 | Msa0655410:intron | 30.0% | |
| ! | TTGTTATGTCACTTGTAGTT+TGG | + | chr4_3:64045769-64045788 | Msa0655420:intron | 30.0% |
| ! | ATAGCATTGAAGAGAATTTC+AGG | + | chr4_3:64044793-64044812 | Msa0655420:CDS | 30.0% |
| AGTGAATCCATTTGTATAAG+TGG | - | chr4_3:64044898-64044917 | Msa0655410:intron | 30.0% | |
| AACATTGCACAACAAAATCT+TGG | + | chr4_3:64044930-64044949 | Msa0655420:CDS | 30.0% | |
| ! | CAAAATCTTGGTTTGAACAT+AGG | + | chr4_3:64044942-64044961 | Msa0655420:CDS | 30.0% |
| ! | CAACAACATGGATAACATTT+TGG | + | chr4_3:64044977-64044996 | Msa0655420:CDS | 30.0% |
| TTTGTTTATGGTTGTGTAGT+TGG | - | chr4_3:64045079-64045098 | Msa0655410:intron | 30.0% | |
| ATCTAATGACAAAAGCAAAG+TGG | - | chr4_3:64045691-64045710 | Msa0655410:intron | 30.0% | |
| ! | TTGTTATGTCACTTGTAGTT+TGG | + | chr4_3:64045769-64045788 | Msa0655420:intron | 30.0% |
| !! | CAGTTTGCTCATGCATATTT+TGG | - | chr4_3:64044668-64044687 | Msa0655410:intron | 35.0% |
| CAAAATATGCATGAGCAAAC+TGG | + | chr4_3:64044666-64044685 | Msa0655420:CDS | 35.0% | |
| !! | TGTGGGAAGAGATTTTGATA+AGG | + | chr4_3:64044821-64044840 | Msa0655420:CDS | 35.0% |
| TATAAGTGGAGACATCTTCA+AGG | - | chr4_3:64044884-64044903 | Msa0655410:intron | 35.0% | |
| GATGTCTCCACTTATACAAA+TGG | + | chr4_3:64044888-64044907 | Msa0655420:CDS | 35.0% | |
| ! | TGTGCAATGTTTTCTGATGA+GGG | - | chr4_3:64044921-64044940 | Msa0655410:intron | 35.0% |
| ! | TTGTGCAATGTTTTCTGATG+AGG | - | chr4_3:64044922-64044941 | Msa0655410:intron | 35.0% |
| GAACTACTACTACAACAACA+TGG | + | chr4_3:64044965-64044984 | Msa0655420:CDS | 35.0% | |
| !! | AGGGATTGTAGCTTTGTTTA+TGG | - | chr4_3:64045091-64045110 | Msa0655410:intron | 35.0% |
| AGATTTAGTACATCTGGTGA+AGG | - | chr4_3:64045137-64045156 | Msa0655410:intron | 35.0% | |
| TGGTGAAGATTTAGTACATC+TGG | - | chr4_3:64045143-64045162 | Msa0655410:intron | 35.0% | |
| !!! | AATTAGGTGGCTTTTGAGTT+GGG | - | chr4_3:64045226-64045245 | Msa0655410:intron | 35.0% |
| !! | AAATTAGGTGGCTTTTGAGT+TGG | - | chr4_3:64045227-64045246 | Msa0655410:intron | 35.0% |
| ! | ATCGAGTAATGGAAATTAGG+TGG | - | chr4_3:64045239-64045258 | Msa0655410:intron | 35.0% |
| ! | CTCATCGAGTAATGGAAATT+AGG | - | chr4_3:64045242-64045261 | Msa0655410:intron | 35.0% |
| CAAGAAAACTCATCGAGTAA+TGG | - | chr4_3:64045250-64045269 | Msa0655410:intron | 35.0% | |
| ! | CATTACTCGATGAGTTTTCT+TGG | + | chr4_3:64045248-64045267 | Msa0655420:CDS | 35.0% |
| AGATTGAGGCAATTCTCTAA+GGG | - | chr4_3:64045363-64045382 | Msa0655410:intron | 35.0% | |
| AGCTACAGAACATTTGACAA+CGG | + | chr4_3:64045523-64045542 | Msa0655420:CDS | 35.0% | |
| ACAAAGAAGAGAGCAATTGA+AGG | + | chr4_3:64045550-64045569 | Msa0655420:CDS | 35.0% | |
| CAAAGAAGAGAGCAATTGAA+GGG | + | chr4_3:64045551-64045570 | Msa0655420:CDS | 35.0% | |
| AGGGAAGATACAAAATCTTG+AGG | + | chr4_3:64045570-64045589 | Msa0655420:CDS | 35.0% | |
| AGTGAATGAGCTGAAACTAT+TGG | + | chr4_3:64045995-64046014 | Msa0655420:CDS | 35.0% | |
| CAAACTGTTTCAGAGAAAGA+AGG | + | chr4_3:64046199-64046218 | Msa0655420:CDS | 35.0% | |
| TAGTTTCCTGTTCAATAGCA+AGG | + | chr4_3:64046310-64046329 | Msa0655420:CDS | 35.0% | |
| !! | TATCAACCTTGCTATTGAAC+AGG | - | chr4_3:64046319-64046338 | Msa0655410:intron | 35.0% |
| !! | CAGTTTGCTCATGCATATTT+TGG | - | chr4_3:64044668-64044687 | Msa0655410:intron | 35.0% |
| CAAAATATGCATGAGCAAAC+TGG | + | chr4_3:64044666-64044685 | Msa0655420:CDS | 35.0% | |
| !! | TGTGGGAAGAGATTTTGATA+AGG | + | chr4_3:64044821-64044840 | Msa0655420:CDS | 35.0% |
| TATAAGTGGAGACATCTTCA+AGG | - | chr4_3:64044884-64044903 | Msa0655410:intron | 35.0% | |
| GATGTCTCCACTTATACAAA+TGG | + | chr4_3:64044888-64044907 | Msa0655420:CDS | 35.0% | |
| ! | TGTGCAATGTTTTCTGATGA+GGG | - | chr4_3:64044921-64044940 | Msa0655410:intron | 35.0% |
| ! | TTGTGCAATGTTTTCTGATG+AGG | - | chr4_3:64044922-64044941 | Msa0655410:intron | 35.0% |
| GAACTACTACTACAACAACA+TGG | + | chr4_3:64044965-64044984 | Msa0655420:CDS | 35.0% | |
| !! | AGGGATTGTAGCTTTGTTTA+TGG | - | chr4_3:64045091-64045110 | Msa0655410:intron | 35.0% |
| AGATTTAGTACATCTGGTGA+AGG | - | chr4_3:64045137-64045156 | Msa0655410:intron | 35.0% | |
| TGGTGAAGATTTAGTACATC+TGG | - | chr4_3:64045143-64045162 | Msa0655410:intron | 35.0% | |
| !!! | AATTAGGTGGCTTTTGAGTT+GGG | - | chr4_3:64045226-64045245 | Msa0655410:intron | 35.0% |
| !! | AAATTAGGTGGCTTTTGAGT+TGG | - | chr4_3:64045227-64045246 | Msa0655410:intron | 35.0% |
| ! | ATCGAGTAATGGAAATTAGG+TGG | - | chr4_3:64045239-64045258 | Msa0655410:intron | 35.0% |
| ! | CTCATCGAGTAATGGAAATT+AGG | - | chr4_3:64045242-64045261 | Msa0655410:intron | 35.0% |
| CAAGAAAACTCATCGAGTAA+TGG | - | chr4_3:64045250-64045269 | Msa0655410:intron | 35.0% | |
| ! | CATTACTCGATGAGTTTTCT+TGG | + | chr4_3:64045248-64045267 | Msa0655420:CDS | 35.0% |
| AGATTGAGGCAATTCTCTAA+GGG | - | chr4_3:64045363-64045382 | Msa0655410:intron | 35.0% | |
| AGCTACAGAACATTTGACAA+CGG | + | chr4_3:64045523-64045542 | Msa0655420:CDS | 35.0% | |
| ACAAAGAAGAGAGCAATTGA+AGG | + | chr4_3:64045550-64045569 | Msa0655420:CDS | 35.0% | |
| CAAAGAAGAGAGCAATTGAA+GGG | + | chr4_3:64045551-64045570 | Msa0655420:CDS | 35.0% | |
| AGGGAAGATACAAAATCTTG+AGG | + | chr4_3:64045570-64045589 | Msa0655420:CDS | 35.0% | |
| AGTGAATGAGCTGAAACTAT+TGG | + | chr4_3:64045995-64046014 | Msa0655420:CDS | 35.0% | |
| CAAACTGTTTCAGAGAAAGA+AGG | + | chr4_3:64046199-64046218 | Msa0655420:CDS | 35.0% | |
| TAGTTTCCTGTTCAATAGCA+AGG | + | chr4_3:64046310-64046329 | Msa0655420:CDS | 35.0% | |
| !! | TATCAACCTTGCTATTGAAC+AGG | - | chr4_3:64046319-64046338 | Msa0655410:intron | 35.0% |
| TTGCTTTGATTCCGACACAA+TGG | + | chr4_3:64044689-64044708 | Msa0655420:CDS | 40.0% | |
| TGGGGAGAGTTATTATCTTC+TGG | - | chr4_3:64044735-64044754 | Msa0655410:intron | 40.0% | |
| !! | ACTTGATTTGGCATGGTTTG+GGG | - | chr4_3:64044753-64044772 | Msa0655410:intron | 40.0% |
| !! | CACTTGATTTGGCATGGTTT+GGG | - | chr4_3:64044754-64044773 | Msa0655410:intron | 40.0% |
| TTACCTGCAACCACTTGATT+TGG | - | chr4_3:64044765-64044784 | Msa0655410:intron | 40.0% | |
| TCAAAATCTCTTCCCACAGA+AGG | - | chr4_3:64044819-64044838 | Msa0655410:intron | 40.0% | |
| !! | GGGAAGAGATTTTGATAAGG+AGG | + | chr4_3:64044824-64044843 | Msa0655420:CDS | 40.0% |
| !! | AGACATCTTCAAGGTGTTGT+GGG | - | chr4_3:64044875-64044894 | Msa0655410:intron | 40.0% |
| !!! | GGATAACATTTTGGAGCAAG+AGG | + | chr4_3:64044986-64045005 | Msa0655420:CDS | 40.0% |
| AGGTGTATCAGAATTCGAGT+TGG | + | chr4_3:64045006-64045025 | Msa0655420:CDS | 40.0% | |
| ! | GGTGTATCAGAATTCGAGTT+GGG | + | chr4_3:64045007-64045026 | Msa0655420:CDS | 40.0% |
| ! | TTGGTGGTATTCTTGGTGAT+TGG | - | chr4_3:64045060-64045079 | Msa0655410:intron | 40.0% |
| !! | TGTGTAGTTGGTGGTATTCT+TGG | - | chr4_3:64045067-64045086 | Msa0655410:intron | 40.0% |
| GTTTATGGTTGTGTAGTTGG+TGG | - | chr4_3:64045076-64045095 | Msa0655410:intron | 40.0% | |
| AGGATAATGAGGGTCTTGAA+TGG | - | chr4_3:64045117-64045136 | Msa0655410:intron | 40.0% | |
| CATCTGGTGAAGGATAATGA+GGG | - | chr4_3:64045127-64045146 | Msa0655410:intron | 40.0% | |
| ACATCTGGTGAAGGATAATG+AGG | - | chr4_3:64045128-64045147 | Msa0655410:intron | 40.0% | |
| ATAGATGAAGCTGAGGATCT+AGG | - | chr4_3:64045170-64045189 | Msa0655410:intron | 40.0% | |
| TGTGAGAATAGATGAAGCTG+AGG | - | chr4_3:64045177-64045196 | Msa0655410:intron | 40.0% | |
| !!! | ATTAGGTGGCTTTTGAGTTG+GGG | - | chr4_3:64045225-64045244 | Msa0655410:intron | 40.0% |
| TTTCTTGGAGACCTTCCAAT+AGG | + | chr4_3:64045263-64045282 | Msa0655420:CDS | 40.0% | |
| GGAAGGTTCATAGGAAATAG+AGG | - | chr4_3:64045326-64045345 | Msa0655410:intron | 40.0% | |
| GAGATTGAGGCAATTCTCTA+AGG | - | chr4_3:64045364-64045383 | Msa0655410:intron | 40.0% | |
| ! | TCAAGGAATGGTTCTCGTTT+TGG | + | chr4_3:64045413-64045432 | Msa0655420:CDS | 40.0% |
| !! | AACAAGGTCACTGCTTTTGT+TGG | + | chr4_3:64045485-64045504 | Msa0655420:CDS | 40.0% |
| ! | GCTTTTGTTGGCAAAGGAAA+AGG | + | chr4_3:64045497-64045516 | Msa0655420:CDS | 40.0% |
| !! | GGGCAGTTTTGATCTAATAC+AGG | + | chr4_3:64045914-64045933 | Msa0655420:intron | 40.0% |
| GAATGAGCTGAAACTATTGG+TGG | + | chr4_3:64045998-64046017 | Msa0655420:CDS | 40.0% | |
| GAGGAAATCAAAAGACAGTG+AGG | + | chr4_3:64046142-64046161 | Msa0655420:CDS | 40.0% | |
| !! | AAGACAGTGAGGTTGATGTT+CGG | + | chr4_3:64046153-64046172 | Msa0655420:CDS | 40.0% |
| !! | TTGCTTGCTGTTTGTTTCCA+AGG | + | chr4_3:64046226-64046245 | Msa0655420:CDS | 40.0% |
| ! | GCTGTTTGTTTCCAAGGTTT+TGG | + | chr4_3:64046232-64046251 | Msa0655420:CDS | 40.0% |
| !! | GTTTGTTTCCAAGGTTTTGG+AGG | + | chr4_3:64046235-64046254 | Msa0655420:CDS | 40.0% |
| TTGGAACTTAACCATGTTGC+AGG | + | chr4_3:64046266-64046285 | Msa0655420:CDS | 40.0% | |
| ! | ATGAGGTGTTTCACTTATGC+AGG | + | chr4_3:64046407-64046426 | Msa0655420:intron | 40.0% |
| TCACTTATGCAGGTAACTGA+AGG | + | chr4_3:64046417-64046436 | Msa0655420:intron | 40.0% | |
| ATGCAAGTGCTATAGCAAAC+AGG | + | chr4_3:64046451-64046470 | Msa0655420:CDS | 40.0% | |
| TGCAAGTGCTATAGCAAACA+GGG | + | chr4_3:64046452-64046471 | Msa0655420:CDS | 40.0% | |
| AAACAGGGTGATTGATGTTC+TGG | + | chr4_3:64046467-64046486 | Msa0655420:CDS | 40.0% | |
| TTGCTTTGATTCCGACACAA+TGG | + | chr4_3:64044689-64044708 | Msa0655420:CDS | 40.0% | |
| TGGGGAGAGTTATTATCTTC+TGG | - | chr4_3:64044735-64044754 | Msa0655410:intron | 40.0% | |
| !! | ACTTGATTTGGCATGGTTTG+GGG | - | chr4_3:64044753-64044772 | Msa0655410:intron | 40.0% |
| !! | CACTTGATTTGGCATGGTTT+GGG | - | chr4_3:64044754-64044773 | Msa0655410:intron | 40.0% |
| TTACCTGCAACCACTTGATT+TGG | - | chr4_3:64044765-64044784 | Msa0655410:intron | 40.0% | |
| TCAAAATCTCTTCCCACAGA+AGG | - | chr4_3:64044819-64044838 | Msa0655410:intron | 40.0% | |
| !! | GGGAAGAGATTTTGATAAGG+AGG | + | chr4_3:64044824-64044843 | Msa0655420:CDS | 40.0% |
| !! | AGACATCTTCAAGGTGTTGT+GGG | - | chr4_3:64044875-64044894 | Msa0655410:intron | 40.0% |
| !!! | GGATAACATTTTGGAGCAAG+AGG | + | chr4_3:64044986-64045005 | Msa0655420:CDS | 40.0% |
| AGGTGTATCAGAATTCGAGT+TGG | + | chr4_3:64045006-64045025 | Msa0655420:CDS | 40.0% | |
| ! | GGTGTATCAGAATTCGAGTT+GGG | + | chr4_3:64045007-64045026 | Msa0655420:CDS | 40.0% |
| ! | TTGGTGGTATTCTTGGTGAT+TGG | - | chr4_3:64045060-64045079 | Msa0655410:intron | 40.0% |
| !! | TGTGTAGTTGGTGGTATTCT+TGG | - | chr4_3:64045067-64045086 | Msa0655410:intron | 40.0% |
| GTTTATGGTTGTGTAGTTGG+TGG | - | chr4_3:64045076-64045095 | Msa0655410:intron | 40.0% | |
| AGGATAATGAGGGTCTTGAA+TGG | - | chr4_3:64045117-64045136 | Msa0655410:intron | 40.0% | |
| CATCTGGTGAAGGATAATGA+GGG | - | chr4_3:64045127-64045146 | Msa0655410:intron | 40.0% | |
| ACATCTGGTGAAGGATAATG+AGG | - | chr4_3:64045128-64045147 | Msa0655410:intron | 40.0% | |
| ATAGATGAAGCTGAGGATCT+AGG | - | chr4_3:64045170-64045189 | Msa0655410:intron | 40.0% | |
| TGTGAGAATAGATGAAGCTG+AGG | - | chr4_3:64045177-64045196 | Msa0655410:intron | 40.0% | |
| !!! | ATTAGGTGGCTTTTGAGTTG+GGG | - | chr4_3:64045225-64045244 | Msa0655410:intron | 40.0% |
| TTTCTTGGAGACCTTCCAAT+AGG | + | chr4_3:64045263-64045282 | Msa0655420:CDS | 40.0% | |
| GGAAGGTTCATAGGAAATAG+AGG | - | chr4_3:64045326-64045345 | Msa0655410:intron | 40.0% | |
| GAGATTGAGGCAATTCTCTA+AGG | - | chr4_3:64045364-64045383 | Msa0655410:intron | 40.0% | |
| ! | TCAAGGAATGGTTCTCGTTT+TGG | + | chr4_3:64045413-64045432 | Msa0655420:CDS | 40.0% |
| !! | AACAAGGTCACTGCTTTTGT+TGG | + | chr4_3:64045485-64045504 | Msa0655420:CDS | 40.0% |
| ! | GCTTTTGTTGGCAAAGGAAA+AGG | + | chr4_3:64045497-64045516 | Msa0655420:CDS | 40.0% |
| !! | GGGCAGTTTTGATCTAATAC+AGG | + | chr4_3:64045914-64045933 | Msa0655420:intron | 40.0% |
| GAATGAGCTGAAACTATTGG+TGG | + | chr4_3:64045998-64046017 | Msa0655420:CDS | 40.0% | |
| GAGGAAATCAAAAGACAGTG+AGG | + | chr4_3:64046142-64046161 | Msa0655420:CDS | 40.0% | |
| !! | AAGACAGTGAGGTTGATGTT+CGG | + | chr4_3:64046153-64046172 | Msa0655420:CDS | 40.0% |
| !! | TTGCTTGCTGTTTGTTTCCA+AGG | + | chr4_3:64046226-64046245 | Msa0655420:CDS | 40.0% |
| ! | GCTGTTTGTTTCCAAGGTTT+TGG | + | chr4_3:64046232-64046251 | Msa0655420:CDS | 40.0% |
| !! | GTTTGTTTCCAAGGTTTTGG+AGG | + | chr4_3:64046235-64046254 | Msa0655420:CDS | 40.0% |
| TTGGAACTTAACCATGTTGC+AGG | + | chr4_3:64046266-64046285 | Msa0655420:CDS | 40.0% | |
| ! | ATGAGGTGTTTCACTTATGC+AGG | + | chr4_3:64046407-64046426 | Msa0655420:intron | 40.0% |
| TCACTTATGCAGGTAACTGA+AGG | + | chr4_3:64046417-64046436 | Msa0655420:intron | 40.0% | |
| ATGCAAGTGCTATAGCAAAC+AGG | + | chr4_3:64046451-64046470 | Msa0655420:CDS | 40.0% | |
| TGCAAGTGCTATAGCAAACA+GGG | + | chr4_3:64046452-64046471 | Msa0655420:CDS | 40.0% | |
| AAACAGGGTGATTGATGTTC+TGG | + | chr4_3:64046467-64046486 | Msa0655420:CDS | 40.0% | |
| AACACCTTCTGCCATTGTGT+CGG | - | chr4_3:64044703-64044722 | Msa0655410:intron | 45.0% | |
| !! | CCACTTGATTTGGCATGGTT+TGG | - | chr4_3:64044755-64044774 | Msa0655410:intron | 45.0% |
| CCAAACCATGCCAAATCAAG+TGG | + | chr4_3:64044752-64044771 | Msa0655420:CDS | 45.0% | |
| !! | TGCAACCACTTGATTTGGCA+TGG | - | chr4_3:64044760-64044779 | Msa0655410:intron | 45.0% |
| ATGCCAAATCAAGTGGTTGC+AGG | + | chr4_3:64044759-64044778 | Msa0655420:CDS | 45.0% | |
| AGAGAATTTCAGGCCTTCTG+TGG | + | chr4_3:64044803-64044822 | Msa0655420:CDS | 45.0% | |
| GAGAATTTCAGGCCTTCTGT+GGG | + | chr4_3:64044804-64044823 | Msa0655420:CDS | 45.0% | |
| !! | GAGACATCTTCAAGGTGTTG+TGG | - | chr4_3:64044876-64044895 | Msa0655410:intron | 45.0% |
| AGTCCATATCCTGAGCACTA+GGG | - | chr4_3:64045034-64045053 | Msa0655410:intron | 45.0% | |
| TAGTCCATATCCTGAGCACT+AGG | - | chr4_3:64045035-64045054 | Msa0655410:intron | 45.0% | |
| TGAGGGTCTTGAATGGTTGA+GGG | - | chr4_3:64045110-64045129 | Msa0655410:intron | 45.0% | |
| ATGAGGGTCTTGAATGGTTG+AGG | - | chr4_3:64045111-64045130 | Msa0655410:intron | 45.0% | |
| AAGCTGAGGATCTAGGAAAG+TGG | - | chr4_3:64045163-64045182 | Msa0655410:intron | 45.0% | |
| ! | GTTGTGATGCAAATGGTGGA+TGG | - | chr4_3:64045203-64045222 | Msa0655410:intron | 45.0% |
| AGTTGGGGTTGTGATGCAAA+TGG | - | chr4_3:64045210-64045229 | Msa0655410:intron | 45.0% | |
| AGTTGTCTGAGCCTATTGGA+AGG | - | chr4_3:64045277-64045296 | Msa0655410:intron | 45.0% | |
| ! | CTTGAGTTGTCTGAGCCTAT+TGG | - | chr4_3:64045281-64045300 | Msa0655410:intron | 45.0% |
| ATAGGCTCAGACAACTCAAG+TGG | + | chr4_3:64045281-64045300 | Msa0655420:CDS | 45.0% | |
| AACTGTGCAGGAAGGTTCAT+AGG | - | chr4_3:64045335-64045354 | Msa0655410:intron | 45.0% | |
| TAGGCATGCTATAGACGTGA+GGG | - | chr4_3:64045388-64045407 | Msa0655410:intron | 45.0% | |
| ATAGCATGCCTACCAACTCA+AGG | + | chr4_3:64045396-64045415 | Msa0655420:CDS | 45.0% | |
| ATGCCTACCAACTCAAGGAA+TGG | + | chr4_3:64045401-64045420 | Msa0655420:CDS | 45.0% | |
| !! | GAACCATTCCTTGAGTTGGT+AGG | - | chr4_3:64045407-64045426 | Msa0655410:intron | 45.0% |
| ACGAGAACCATTCCTTGAGT+TGG | - | chr4_3:64045411-64045430 | Msa0655410:intron | 45.0% | |
| ! | AGGAATGGTTCTCGTTTTGG+TGG | + | chr4_3:64045416-64045435 | Msa0655420:CDS | 45.0% |
| !! | AATGGTTCTCGTTTTGGTGG+AGG | + | chr4_3:64045419-64045438 | Msa0655420:CDS | 45.0% |
| !! | ATGGTTCTCGTTTTGGTGGA+GGG | + | chr4_3:64045420-64045439 | Msa0655420:CDS | 45.0% |
| !! | GTCACTGCTTTTGTTGGCAA+AGG | + | chr4_3:64045491-64045510 | Msa0655420:CDS | 45.0% |
| GGAGAAGAAAAGACACGAGA+TGG | + | chr4_3:64046019-64046038 | Msa0655420:CDS | 45.0% | |
| ! | AGCTGTCACATGAAGCCTTT+TGG | + | chr4_3:64046083-64046102 | Msa0655420:CDS | 45.0% |
| !! | AAGCCTTTTGGTGATCCAGA+TGG | + | chr4_3:64046095-64046114 | Msa0655420:CDS | 45.0% |
| CTTCCATCTGGATCACCAAA+AGG | - | chr4_3:64046101-64046120 | Msa0655410:intron | 45.0% | |
| ! | GTGATCCAGATGGAAGCATA+AGG | + | chr4_3:64046105-64046124 | Msa0655420:CDS | 45.0% |
| ! | ATGGAAGCATAAGGACCTCA+TGG | + | chr4_3:64046114-64046133 | Msa0655420:CDS | 45.0% |
| CTGAAGTTCCTCCAAAACCT+TGG | - | chr4_3:64046246-64046265 | Msa0655410:intron | 45.0% | |
| !!! | GGTTTTGGAGGAACTTCAGT+TGG | + | chr4_3:64046247-64046266 | Msa0655420:CDS | 45.0% |
| GAACTTAACCATGTTGCAGG+TGG | + | chr4_3:64046269-64046288 | Msa0655420:CDS | 45.0% | |
| CAGCAGTTGTCCCACATAAT+AGG | + | chr4_3:64046502-64046521 | Msa0655420:CDS | 45.0% | |
| AACACCTTCTGCCATTGTGT+CGG | - | chr4_3:64044703-64044722 | Msa0655410:intron | 45.0% | |
| !! | CCACTTGATTTGGCATGGTT+TGG | - | chr4_3:64044755-64044774 | Msa0655410:intron | 45.0% |
| CCAAACCATGCCAAATCAAG+TGG | + | chr4_3:64044752-64044771 | Msa0655420:CDS | 45.0% | |
| !! | TGCAACCACTTGATTTGGCA+TGG | - | chr4_3:64044760-64044779 | Msa0655410:intron | 45.0% |
| ATGCCAAATCAAGTGGTTGC+AGG | + | chr4_3:64044759-64044778 | Msa0655420:CDS | 45.0% | |
| AGAGAATTTCAGGCCTTCTG+TGG | + | chr4_3:64044803-64044822 | Msa0655420:CDS | 45.0% | |
| GAGAATTTCAGGCCTTCTGT+GGG | + | chr4_3:64044804-64044823 | Msa0655420:CDS | 45.0% | |
| !! | GAGACATCTTCAAGGTGTTG+TGG | - | chr4_3:64044876-64044895 | Msa0655410:intron | 45.0% |
| AGTCCATATCCTGAGCACTA+GGG | - | chr4_3:64045034-64045053 | Msa0655410:intron | 45.0% | |
| TAGTCCATATCCTGAGCACT+AGG | - | chr4_3:64045035-64045054 | Msa0655410:intron | 45.0% | |
| TGAGGGTCTTGAATGGTTGA+GGG | - | chr4_3:64045110-64045129 | Msa0655410:intron | 45.0% | |
| ATGAGGGTCTTGAATGGTTG+AGG | - | chr4_3:64045111-64045130 | Msa0655410:intron | 45.0% | |
| AAGCTGAGGATCTAGGAAAG+TGG | - | chr4_3:64045163-64045182 | Msa0655410:intron | 45.0% | |
| ! | GTTGTGATGCAAATGGTGGA+TGG | - | chr4_3:64045203-64045222 | Msa0655410:intron | 45.0% |
| AGTTGGGGTTGTGATGCAAA+TGG | - | chr4_3:64045210-64045229 | Msa0655410:intron | 45.0% | |
| AGTTGTCTGAGCCTATTGGA+AGG | - | chr4_3:64045277-64045296 | Msa0655410:intron | 45.0% | |
| ! | CTTGAGTTGTCTGAGCCTAT+TGG | - | chr4_3:64045281-64045300 | Msa0655410:intron | 45.0% |
| ATAGGCTCAGACAACTCAAG+TGG | + | chr4_3:64045281-64045300 | Msa0655420:CDS | 45.0% | |
| AACTGTGCAGGAAGGTTCAT+AGG | - | chr4_3:64045335-64045354 | Msa0655410:intron | 45.0% | |
| TAGGCATGCTATAGACGTGA+GGG | - | chr4_3:64045388-64045407 | Msa0655410:intron | 45.0% | |
| ATAGCATGCCTACCAACTCA+AGG | + | chr4_3:64045396-64045415 | Msa0655420:CDS | 45.0% | |
| ATGCCTACCAACTCAAGGAA+TGG | + | chr4_3:64045401-64045420 | Msa0655420:CDS | 45.0% | |
| !! | GAACCATTCCTTGAGTTGGT+AGG | - | chr4_3:64045407-64045426 | Msa0655410:intron | 45.0% |
| ACGAGAACCATTCCTTGAGT+TGG | - | chr4_3:64045411-64045430 | Msa0655410:intron | 45.0% | |
| ! | AGGAATGGTTCTCGTTTTGG+TGG | + | chr4_3:64045416-64045435 | Msa0655420:CDS | 45.0% |
| !! | AATGGTTCTCGTTTTGGTGG+AGG | + | chr4_3:64045419-64045438 | Msa0655420:CDS | 45.0% |
| !! | ATGGTTCTCGTTTTGGTGGA+GGG | + | chr4_3:64045420-64045439 | Msa0655420:CDS | 45.0% |
| !! | GTCACTGCTTTTGTTGGCAA+AGG | + | chr4_3:64045491-64045510 | Msa0655420:CDS | 45.0% |
| GGAGAAGAAAAGACACGAGA+TGG | + | chr4_3:64046019-64046038 | Msa0655420:CDS | 45.0% | |
| ! | AGCTGTCACATGAAGCCTTT+TGG | + | chr4_3:64046083-64046102 | Msa0655420:CDS | 45.0% |
| !! | AAGCCTTTTGGTGATCCAGA+TGG | + | chr4_3:64046095-64046114 | Msa0655420:CDS | 45.0% |
| CTTCCATCTGGATCACCAAA+AGG | - | chr4_3:64046101-64046120 | Msa0655410:intron | 45.0% | |
| ! | GTGATCCAGATGGAAGCATA+AGG | + | chr4_3:64046105-64046124 | Msa0655420:CDS | 45.0% |
| ! | ATGGAAGCATAAGGACCTCA+TGG | + | chr4_3:64046114-64046133 | Msa0655420:CDS | 45.0% |
| CTGAAGTTCCTCCAAAACCT+TGG | - | chr4_3:64046246-64046265 | Msa0655410:intron | 45.0% | |
| !!! | GGTTTTGGAGGAACTTCAGT+TGG | + | chr4_3:64046247-64046266 | Msa0655420:CDS | 45.0% |
| GAACTTAACCATGTTGCAGG+TGG | + | chr4_3:64046269-64046288 | Msa0655420:CDS | 45.0% | |
| CAGCAGTTGTCCCACATAAT+AGG | + | chr4_3:64046502-64046521 | Msa0655420:CDS | 45.0% | |
| GATTCCGACACAATGGCAGA+AGG | + | chr4_3:64044696-64044715 | Msa0655420:CDS | 50.0% | |
| TGGGGTTGTGATGCAAATGG+TGG | - | chr4_3:64045207-64045226 | Msa0655410:intron | 50.0% | |
| GAACCTTCCTGCACAGTTTC+CGG | + | chr4_3:64045337-64045356 | Msa0655420:CDS | 50.0% | |
| ! | TGAGGCAATTCTCTAAGGGC+CGG | - | chr4_3:64045359-64045378 | Msa0655410:intron | 50.0% |
| TAGACGTGAGGGAGAGATTG+AGG | - | chr4_3:64045377-64045396 | Msa0655410:intron | 50.0% | |
| GTAGGCATGCTATAGACGTG+AGG | - | chr4_3:64045389-64045408 | Msa0655410:intron | 50.0% | |
| !! | TGGTTCTCGTTTTGGTGGAG+GGG | + | chr4_3:64045421-64045440 | Msa0655420:CDS | 50.0% |
| ! | TTTTGGTGGAGGGGATGAGA+TGG | + | chr4_3:64045430-64045449 | Msa0655420:CDS | 50.0% |
| ! | ATGGAGGGAGATGGAGGTAT+GGG | + | chr4_3:64045449-64045468 | Msa0655420:CDS | 50.0% |
| ! | AGATGGAGGTATGGGAGTGT+CGG | + | chr4_3:64045457-64045476 | Msa0655420:CDS | 50.0% |
| !! | GGGAGTGTCGGAATTCAACA+AGG | + | chr4_3:64045469-64045488 | Msa0655420:CDS | 50.0% |
| ! | ACAGGATGACAGAGCATCAG+TGG | + | chr4_3:64045932-64045951 | Msa0655420:intron | 50.0% |
| ! | GATGACAGAGCATCAGTGGT+CGG | + | chr4_3:64045936-64045955 | Msa0655420:CDS | 50.0% |
| GAGGTCCTTATGCTTCCATC+TGG | - | chr4_3:64046113-64046132 | Msa0655410:intron | 50.0% | |
| TGATTTCCTCTGCAGCCATG+AGG | - | chr4_3:64046132-64046151 | Msa0655410:intron | 50.0% | |
| CAACATGTCCACCTGCAACA+TGG | - | chr4_3:64046280-64046299 | Msa0655410:intron | 50.0% | |
| CATGTTGCAGGTGGACATGT+TGG | + | chr4_3:64046278-64046297 | Msa0655420:CDS | 50.0% | |
| GATTCCGACACAATGGCAGA+AGG | + | chr4_3:64044696-64044715 | Msa0655420:CDS | 50.0% | |
| TGGGGTTGTGATGCAAATGG+TGG | - | chr4_3:64045207-64045226 | Msa0655410:intron | 50.0% | |
| GAACCTTCCTGCACAGTTTC+CGG | + | chr4_3:64045337-64045356 | Msa0655420:CDS | 50.0% | |
| ! | TGAGGCAATTCTCTAAGGGC+CGG | - | chr4_3:64045359-64045378 | Msa0655410:intron | 50.0% |
| TAGACGTGAGGGAGAGATTG+AGG | - | chr4_3:64045377-64045396 | Msa0655410:intron | 50.0% | |
| GTAGGCATGCTATAGACGTG+AGG | - | chr4_3:64045389-64045408 | Msa0655410:intron | 50.0% | |
| !! | TGGTTCTCGTTTTGGTGGAG+GGG | + | chr4_3:64045421-64045440 | Msa0655420:CDS | 50.0% |
| ! | TTTTGGTGGAGGGGATGAGA+TGG | + | chr4_3:64045430-64045449 | Msa0655420:CDS | 50.0% |
| ! | ATGGAGGGAGATGGAGGTAT+GGG | + | chr4_3:64045449-64045468 | Msa0655420:CDS | 50.0% |
| ! | AGATGGAGGTATGGGAGTGT+CGG | + | chr4_3:64045457-64045476 | Msa0655420:CDS | 50.0% |
| !! | GGGAGTGTCGGAATTCAACA+AGG | + | chr4_3:64045469-64045488 | Msa0655420:CDS | 50.0% |
| ! | ACAGGATGACAGAGCATCAG+TGG | + | chr4_3:64045932-64045951 | Msa0655420:intron | 50.0% |
| ! | GATGACAGAGCATCAGTGGT+CGG | + | chr4_3:64045936-64045955 | Msa0655420:CDS | 50.0% |
| GAGGTCCTTATGCTTCCATC+TGG | - | chr4_3:64046113-64046132 | Msa0655410:intron | 50.0% | |
| TGATTTCCTCTGCAGCCATG+AGG | - | chr4_3:64046132-64046151 | Msa0655410:intron | 50.0% | |
| CAACATGTCCACCTGCAACA+TGG | - | chr4_3:64046280-64046299 | Msa0655410:intron | 50.0% | |
| CATGTTGCAGGTGGACATGT+TGG | + | chr4_3:64046278-64046297 | Msa0655420:CDS | 50.0% | |
| GGACCCTAGTGCTCAGGATA+TGG | + | chr4_3:64045028-64045047 | Msa0655420:CDS | 55.0% | |
| GATGAGATGGAGGGAGATGG+AGG | + | chr4_3:64045443-64045462 | Msa0655420:CDS | 55.0% | |
| GATGGAGGGAGATGGAGGTA+TGG | + | chr4_3:64045448-64045467 | Msa0655420:CDS | 55.0% | |
| TAAGGACCTCATGGCTGCAG+AGG | + | chr4_3:64046123-64046142 | Msa0655420:CDS | 55.0% | |
| GGACCCTAGTGCTCAGGATA+TGG | + | chr4_3:64045028-64045047 | Msa0655420:CDS | 55.0% | |
| GATGAGATGGAGGGAGATGG+AGG | + | chr4_3:64045443-64045462 | Msa0655420:CDS | 55.0% | |
| GATGGAGGGAGATGGAGGTA+TGG | + | chr4_3:64045448-64045467 | Msa0655420:CDS | 55.0% | |
| TAAGGACCTCATGGCTGCAG+AGG | + | chr4_3:64046123-64046142 | Msa0655420:CDS | 55.0% | |
| GAGTTGGGACCCTAGTGCTC+AGG | + | chr4_3:64045022-64045041 | Msa0655420:CDS | 60.0% | |
| CTAAGGGCCGGAAACTGTGC+AGG | - | chr4_3:64045347-64045366 | Msa0655410:intron | 60.0% | |
| TGGTGGAGGGGATGAGATGG+AGG | + | chr4_3:64045433-64045452 | Msa0655420:CDS | 60.0% | |
| GGTGGAGGGGATGAGATGGA+GGG | + | chr4_3:64045434-64045453 | Msa0655420:CDS | 60.0% | |
| GGGGATGAGATGGAGGGAGA+TGG | + | chr4_3:64045440-64045459 | Msa0655420:CDS | 60.0% | |
| GAGTTGGGACCCTAGTGCTC+AGG | + | chr4_3:64045022-64045041 | Msa0655420:CDS | 60.0% | |
| CTAAGGGCCGGAAACTGTGC+AGG | - | chr4_3:64045347-64045366 | Msa0655410:intron | 60.0% | |
| TGGTGGAGGGGATGAGATGG+AGG | + | chr4_3:64045433-64045452 | Msa0655420:CDS | 60.0% | |
| GGTGGAGGGGATGAGATGGA+GGG | + | chr4_3:64045434-64045453 | Msa0655420:CDS | 60.0% | |
| GGGGATGAGATGGAGGGAGA+TGG | + | chr4_3:64045440-64045459 | Msa0655420:CDS | 60.0% | |
| GGGCCGGAAACTGTGCAGGA+AGG | - | chr4_3:64045343-64045362 | Msa0655410:intron | 65.0% | |
| GGGCCGGAAACTGTGCAGGA+AGG | - | chr4_3:64045343-64045362 | Msa0655410:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 64044642 | 64046530 | 64044642 | ID=Msa0655420;Name=Msa0655420 |
| chr4_3 | mRNA | 64044642 | 64046530 | 64044642 | ID=Msa0655420-mRNA-1;Parent=Msa0655420;Name=Msa0655420-mRNA-1;_AED=0.01;_eAED=0.05;_QI=0|0.5|0|1|1|1|3|0|490 |
| chr4_3 | exon | 64044642 | 64045616 | 64044642 | ID=Msa0655420-mRNA-1:exon:18022;Parent=Msa0655420-mRNA-1 |
| chr4_3 | exon | 64045936 | 64046331 | 64045936 | ID=Msa0655420-mRNA-1:exon:18023;Parent=Msa0655420-mRNA-1 |
| chr4_3 | exon | 64046429 | 64046530 | 64046429 | ID=Msa0655420-mRNA-1:exon:18024;Parent=Msa0655420-mRNA-1 |
| chr4_3 | CDS | 64044642 | 64045616 | 64044642 | ID=Msa0655420-mRNA-1:cds;Parent=Msa0655420-mRNA-1 |
| chr4_3 | CDS | 64045936 | 64046331 | 64045936 | ID=Msa0655420-mRNA-1:cds;Parent=Msa0655420-mRNA-1 |
| chr4_3 | CDS | 64046429 | 64046530 | 64046429 | ID=Msa0655420-mRNA-1:cds;Parent=Msa0655420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
