Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561970 | ACJ84249.1 | 89.785 | 372 | 35 | 2 | 1 | 369 | 1 | 372 | 0.0 | 630 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561970 | sp|O23006|LYM2_ARATH | 43.697 | 357 | 182 | 7 | 7 | 360 | 1 | 341 | 7.31e-89 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561970 | B7FHM0 | 89.785 | 372 | 35 | 2 | 1 | 369 | 1 | 372 | 0.0 | 630 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092410 | Msa0561970 | 0.807524 | 4.845749e-50 | -8.615850e-47 |
| Msa0224130 | Msa0561970 | 0.808679 | 2.750620e-50 | -8.615850e-47 |
| Msa0265270 | Msa0561970 | 0.808555 | 2.924570e-50 | -8.615850e-47 |
| Msa0561970 | Msa1364080 | 0.800879 | 1.171675e-48 | -8.615850e-47 |
| Msa0561970 | Msa1430550 | 0.807421 | 5.096493e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561970 | MtrunA17_Chr4g0052691 | 89.785 | 372 | 35 | 2 | 1 | 369 | 1 | 372 | 0.0 | 629 |
| Msa0561970 | MtrunA17_Chr3g0114621 | 34.122 | 296 | 176 | 11 | 36 | 323 | 28 | 312 | 5.60e-39 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561970 | AT2G17120.1 | 43.697 | 357 | 182 | 7 | 7 | 360 | 1 | 341 | 7.43e-90 | 274 |
| Msa0561970 | AT1G21880.1 | 32.075 | 318 | 199 | 9 | 10 | 320 | 8 | 315 | 2.66e-39 | 142 |
| Msa0561970 | AT1G21880.2 | 32.326 | 331 | 205 | 10 | 10 | 331 | 8 | 328 | 3.68e-39 | 144 |
| Msa0561970 | AT1G77630.1 | 31.845 | 336 | 205 | 11 | 5 | 331 | 5 | 325 | 1.21e-35 | 135 |
Find 125 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTGATGTTCCCCTTCC+AGG | 0.233486 | 4_1:-61626176 | Msa0561970:intron |
| GGTTCCGGTGATTCAGATTC+AGG | 0.253482 | 4_1:-61625045 | Msa0561970:CDS |
| TCTTCTATTTAGTGCTTGTT+TGG | 0.281345 | 4_1:-61624819 | Msa0561970:three_prime_UTR |
| GAATCTATTGCTCAAGAATA+TGG | 0.284679 | 4_1:-61626266 | Msa0561970:CDS |
| ACATACTATGTTACAAATAT+TGG | 0.287591 | 4_1:+61624725 | None:intergenic |
| ATCTAAAACCGATAAATAAT+TGG | 0.306172 | 4_1:-61625338 | Msa0561970:CDS |
| TATGCACATATTGTTCCAAT+AGG | 0.319611 | 4_1:-61626299 | Msa0561970:CDS |
| GAGGGTTCGGTTTGCGGGTT+TGG | 0.320109 | 4_1:-61626447 | Msa0561970:CDS |
| GAACACTTGAAGTTTGCTTC+TGG | 0.322262 | 4_1:+61626818 | None:intergenic |
| TGTTCCCTACGCTCATGTTT+TGG | 0.333621 | 4_1:+61626912 | None:intergenic |
| CTGGAATCTTATTTGCCGTT+TGG | 0.341300 | 4_1:+61626408 | None:intergenic |
| CAAACCGACCAATTATTTAT+CGG | 0.342832 | 4_1:+61625330 | None:intergenic |
| GTCTATGATGGTGATGAAAA+AGG | 0.344207 | 4_1:+61627168 | None:intergenic |
| ATAGCGAGGGTTCGGTTTGC+GGG | 0.352754 | 4_1:-61626452 | Msa0561970:CDS |
| TGTTCCGTTACTACATTTGC+AGG | 0.366257 | 4_1:+61626610 | None:intergenic |
| CAATCTTGTACTTGGGTACA+TGG | 0.382662 | 4_1:+61626498 | None:intergenic |
| TTGGTCGGTTTGTCCGTCTA+TGG | 0.383787 | 4_1:-61625319 | Msa0561970:CDS |
| CAAGGTTGCTATTTCCTTCA+AGG | 0.384247 | 4_1:+61626739 | None:intergenic |
| TAACTGTTGTTGGTGTTGCT+TGG | 0.394321 | 4_1:+61626671 | None:intergenic |
| AACTGTTGTTGGTGTTGCTT+GGG | 0.395737 | 4_1:+61626672 | None:intergenic |
| GATTCAATACTACTCCCTAT+TGG | 0.402734 | 4_1:+61626284 | None:intergenic |
| CAATCACCACACACAAAGAT+AGG | 0.403847 | 4_1:-61626969 | Msa0561970:five_prime_UTR |
| TAACTGCTGGTGCTACCATT+TGG | 0.408386 | 4_1:-61626373 | Msa0561970:CDS |
| ATTAACTTTGTAACTGTTGT+TGG | 0.409815 | 4_1:+61626661 | None:intergenic |
| TTTGCCTTGTAGCTGTGATC+AGG | 0.415056 | 4_1:-61626345 | Msa0561970:CDS |
| ATCTTTGTGTGTGGTGATTG+AGG | 0.428552 | 4_1:+61626972 | None:intergenic |
| GCAGTTATATTATTAGCATC+TGG | 0.430813 | 4_1:+61626389 | None:intergenic |
| ACAGTGCCACCTAGTGGTTC+CGG | 0.432003 | 4_1:-61625060 | Msa0561970:intron |
| AATAGCGAGGGTTCGGTTTG+CGG | 0.432989 | 4_1:-61626453 | Msa0561970:CDS |
| TTGTGTGTGGTGATTGAGGT+TGG | 0.433597 | 4_1:+61626976 | None:intergenic |
| TGTACGACTACACGAATTTG+TGG | 0.439919 | 4_1:+61625260 | None:intergenic |
| CAAGGTTGTTGCGTTTGTGC+TGG | 0.440828 | 4_1:+61626757 | None:intergenic |
| GAGTATCAAAAGTGATTCAT+TGG | 0.441298 | 4_1:-61625472 | Msa0561970:CDS |
| ATGCACATATTGTTCCAATA+GGG | 0.447055 | 4_1:-61626298 | Msa0561970:CDS |
| AAGGAAATAGCAACCTTGTT+CGG | 0.447627 | 4_1:-61626734 | Msa0561970:CDS |
| CTAGGAGCATGTTGAATGGC+TGG | 0.448470 | 4_1:-61625017 | Msa0561970:CDS |
| CACAAACGCAACAACCTTGA+AGG | 0.449829 | 4_1:-61626753 | Msa0561970:CDS |
| TGTTAGCTCCTAGCAGGTCT+AGG | 0.453766 | 4_1:+61626699 | None:intergenic |
| ACCCGGTACAATCTTGTACT+TGG | 0.454063 | 4_1:+61626490 | None:intergenic |
| AAGCACTAGCAGTGTGGAAT+GGG | 0.459397 | 4_1:+61627087 | None:intergenic |
| TGGATGCAATAGCGAGGGTT+CGG | 0.465399 | 4_1:-61626460 | Msa0561970:CDS |
| TGCAAATGTAGTAACGGAAC+AGG | 0.465594 | 4_1:-61626608 | Msa0561970:intron |
| GGAACCTTGATGACTTGGTT+GGG | 0.472297 | 4_1:+61626638 | None:intergenic |
| CAAACAAGTCACATAGATGC+AGG | 0.476305 | 4_1:+61627202 | None:intergenic |
| GGAGGTTGTTAGCTCCTAGC+AGG | 0.476611 | 4_1:+61626693 | None:intergenic |
| TGTCCGTCTATGGAATGCTC+CGG | 0.477070 | 4_1:-61625309 | Msa0561970:CDS |
| TTGCAGTAGTAGCAAGTGTT+GGG | 0.480370 | 4_1:-61626862 | Msa0561970:CDS |
| TACAAGATTGTACCGGGTGA+TGG | 0.483742 | 4_1:-61626485 | Msa0561970:CDS |
| TAACTCTCCTGGATGGATCA+TGG | 0.484461 | 4_1:+61627258 | None:intergenic |
| GTTGCATTTGGCACAAGGAA+TGG | 0.486915 | 4_1:+61625444 | None:intergenic |
| TTACTACATTTGCAGGGGAA+TGG | 0.490191 | 4_1:+61626617 | None:intergenic |
| TTGACTTTGACTTATAAAGT+TGG | 0.491522 | 4_1:+61627132 | None:intergenic |
| GCTCCGGGAGTGTGATGCTT+GGG | 0.496795 | 4_1:-61625293 | Msa0561970:CDS |
| ATTCAGATTCAGGGGCATCT+AGG | 0.497537 | 4_1:-61625035 | Msa0561970:CDS |
| TCTAGACACCATAACTCTCC+TGG | 0.498178 | 4_1:+61627247 | None:intergenic |
| GATTGTACCGGGTGATGGGC+TGG | 0.502517 | 4_1:-61626480 | Msa0561970:CDS |
| GTGTAGAAATATGTTGCATT+TGG | 0.504690 | 4_1:+61625432 | None:intergenic |
| AAGGGAAGGTTTAACTAAGT+GGG | 0.507553 | 4_1:+61627009 | None:intergenic |
| TGATCCATCCAGGAGAGTTA+TGG | 0.508455 | 4_1:-61627255 | Msa0561970:five_prime_UTR |
| AGACAAATAAGACGAGAAAG+TGG | 0.511768 | 4_1:+61624968 | None:intergenic |
| TGCGTTTGTGCTGGTGTAGT+CGG | 0.516449 | 4_1:+61626766 | None:intergenic |
| CCCGGTACAATCTTGTACTT+GGG | 0.517809 | 4_1:+61626491 | None:intergenic |
| AGAAGAAGAATAGTCTATGA+TGG | 0.520804 | 4_1:+61627156 | None:intergenic |
| GGAACAAGATGGTCACTGTA+TGG | 0.521397 | 4_1:-61626895 | Msa0561970:CDS |
| GTTCCGGTGATTCAGATTCA+GGG | 0.521820 | 4_1:-61625044 | Msa0561970:CDS |
| ACAAGATTGTACCGGGTGAT+GGG | 0.522910 | 4_1:-61626484 | Msa0561970:CDS |
| TGCTCCGGGAGTGTGATGCT+TGG | 0.525368 | 4_1:-61625294 | Msa0561970:CDS |
| TGTAGCTGTGATCAGGCGGA+TGG | 0.526869 | 4_1:-61626338 | Msa0561970:CDS |
| TGAATTCACATTATGAGTTG+AGG | 0.527925 | 4_1:+61627046 | None:intergenic |
| AAATGTAAATGCGACTCTAC+TGG | 0.530306 | 4_1:-61625393 | Msa0561970:CDS |
| TAGGAGCATGTTGAATGGCT+GGG | 0.530960 | 4_1:-61625016 | Msa0561970:CDS |
| TAAGGGAAGGTTTAACTAAG+TGG | 0.531836 | 4_1:+61627008 | None:intergenic |
| TGCCCCTGAATCTGAATCAC+CGG | 0.533305 | 4_1:+61625041 | None:intergenic |
| TGTTGTTGGTGTTGCTTGGG+AGG | 0.535135 | 4_1:+61626675 | None:intergenic |
| CTTGTACTTGGGTACATGGT+TGG | 0.536258 | 4_1:+61626502 | None:intergenic |
| GTCCGTCTATGGAATGCTCC+GGG | 0.536673 | 4_1:-61625308 | Msa0561970:CDS |
| AAAGCACTAGCAGTGTGGAA+TGG | 0.539267 | 4_1:+61627086 | None:intergenic |
| TTGTAAGAAATTACCTGGAA+GGG | 0.540901 | 4_1:+61626163 | None:intergenic |
| GATGCTAATAATATAACTGC+TGG | 0.541523 | 4_1:-61626386 | Msa0561970:CDS |
| GCAATTTCCATGATCCATCC+AGG | 0.543445 | 4_1:-61627265 | None:intergenic |
| GTTGCAGTAGTAGCAAGTGT+TGG | 0.544877 | 4_1:-61626863 | Msa0561970:CDS |
| GTTCCCAAGCATCACACTCC+CGG | 0.546087 | 4_1:+61625290 | None:intergenic |
| TAATCCCAACCAAGTCATCA+AGG | 0.555223 | 4_1:-61626642 | Msa0561970:CDS |
| GGAATGGAACCTTGATGACT+TGG | 0.557647 | 4_1:+61626633 | None:intergenic |
| CTCCCGGAGCATTCCATAGA+CGG | 0.560810 | 4_1:+61625306 | None:intergenic |
| AATATGTTGCATTTGGCACA+AGG | 0.563072 | 4_1:+61625439 | None:intergenic |
| TGTAAGAAATTACCTGGAAG+GGG | 0.571154 | 4_1:+61626164 | None:intergenic |
| GCATCTAGGAGCATGTTGAA+TGG | 0.571353 | 4_1:-61625021 | Msa0561970:CDS |
| ACAAGGCAAAGGAATCCAAA+TGG | 0.573212 | 4_1:+61626358 | None:intergenic |
| GTTGTAAGAAATTACCTGGA+AGG | 0.576069 | 4_1:+61626162 | None:intergenic |
| AACACCAAAACATGAGCGTA+GGG | 0.577240 | 4_1:-61626916 | Msa0561970:exon |
| CGTACAATTTGTGATTACAC+TGG | 0.577678 | 4_1:-61625243 | Msa0561970:CDS |
| AAAACCGATAAATAATTGGT+CGG | 0.580244 | 4_1:-61625334 | Msa0561970:CDS |
| ACCCAAGTACAAGATTGTAC+CGG | 0.581624 | 4_1:-61626492 | Msa0561970:CDS |
| TCCGCCTGATCACAGCTACA+AGG | 0.581971 | 4_1:+61626341 | None:intergenic |
| GTTCCGTTACTACATTTGCA+GGG | 0.582825 | 4_1:+61626611 | None:intergenic |
| CCCAAGTACAAGATTGTACC+GGG | 0.582853 | 4_1:-61626491 | Msa0561970:CDS |
| AACACTTGCTACTACTGCAA+CGG | 0.583006 | 4_1:+61626865 | None:intergenic |
| GAACACCAAAACATGAGCGT+AGG | 0.583823 | 4_1:-61626917 | Msa0561970:exon |
| GTAGCTGTGATCAGGCGGAT+GGG | 0.585028 | 4_1:-61626337 | Msa0561970:CDS |
| TGGTTTCCTATCTTTGTGTG+TGG | 0.590687 | 4_1:+61626963 | None:intergenic |
| TGGAACCTTGATGACTTGGT+TGG | 0.596529 | 4_1:+61626637 | None:intergenic |
| GAAGTATCAACAGATCCAAA+CGG | 0.598179 | 4_1:-61626423 | Msa0561970:CDS |
| TTCCCCTGCAAATGTAGTAA+CGG | 0.598287 | 4_1:-61626614 | Msa0561970:CDS |
| GCCTTGTAGCTGTGATCAGG+CGG | 0.600681 | 4_1:-61626342 | Msa0561970:CDS |
| GACACCATAACTCTCCTGGA+TGG | 0.602502 | 4_1:+61627251 | None:intergenic |
| ACTACTCAGAACACTTGTGC+CGG | 0.606361 | 4_1:-61625189 | Msa0561970:intron |
| TCTGAATCACCGGAACCACT+AGG | 0.612532 | 4_1:+61625051 | None:intergenic |
| AGTGTTCTGAGTAGTAAGAG+TGG | 0.614784 | 4_1:+61625197 | None:intergenic |
| TTCCGTTACTACATTTGCAG+GGG | 0.619937 | 4_1:+61626612 | None:intergenic |
| TGATCACAGCTACAAGGCAA+AGG | 0.620145 | 4_1:+61626347 | None:intergenic |
| TTCCGGTGATTCAGATTCAG+GGG | 0.622806 | 4_1:-61625043 | Msa0561970:CDS |
| TAACAACAACTTACAATGTG+AGG | 0.626182 | 4_1:-61625367 | Msa0561970:CDS |
| AAACACTTCCTAGACCTGCT+AGG | 0.629608 | 4_1:-61626707 | Msa0561970:CDS |
| ATTGCATCCAGCCCATCACC+CGG | 0.634313 | 4_1:+61626473 | None:intergenic |
| AGGGAAGGTTTAACTAAGTG+GGG | 0.634556 | 4_1:+61627010 | None:intergenic |
| AAACAAGTCACATAGATGCA+GGG | 0.649414 | 4_1:+61627203 | None:intergenic |
| ATGGGCTGGATGCAATAGCG+AGG | 0.663816 | 4_1:-61626466 | Msa0561970:CDS |
| TGTAAATGCGACTCTACTGG+TGG | 0.668242 | 4_1:-61625390 | Msa0561970:CDS |
| TGGGCTGGATGCAATAGCGA+GGG | 0.675874 | 4_1:-61626465 | Msa0561970:CDS |
| CATGAGCGTAGGGAACAAGA+TGG | 0.678380 | 4_1:-61626906 | Msa0561970:CDS |
| GATGGAAAGCACTAGCAGTG+TGG | 0.684622 | 4_1:+61627081 | None:intergenic |
| GGGAAGGTTTAACTAAGTGG+GGG | 0.709363 | 4_1:+61627011 | None:intergenic |
| GAATCACCGGAACCACTAGG+TGG | 0.733462 | 4_1:+61625054 | None:intergenic |
| GTCGGCTAAACTACGACACG+TGG | 0.738036 | 4_1:+61626784 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTAATTGTTAATTTGT+TGG | + | chr4_1:61625401-61625420 | None:intergenic | 15.0% |
| !!! | ACAATTTATTTTTCTTTGTT+GGG | + | chr4_1:61626192-61626211 | None:intergenic | 15.0% |
| !!! | AACAATTTATTTTTCTTTGT+TGG | + | chr4_1:61626193-61626212 | None:intergenic | 15.0% |
| !! | AAAGAAAAATAAATTGTTTC+TGG | - | chr4_1:61626195-61626214 | Msa0561970:CDS | 15.0% |
| !! | TTAGTTACAAATTATGTATT+TGG | - | chr4_1:61626801-61626820 | Msa0561970:CDS | 15.0% |
| !!! | TTTTTCTTTTTTTCTTTCTA+TGG | - | chr4_1:61627040-61627059 | Msa0561970:five_prime_UTR | 15.0% |
| !! | GTATTACATTCTTTCAATTA+CGG | - | chr4_1:61625970-61625989 | Msa0561970:intron | 20.0% |
| !! | ATTGATTAGAAATGAATGTA+TGG | - | chr4_1:61626260-61626279 | Msa0561970:CDS | 20.0% |
| !! | TAGCTATATTTATTTACCTT+AGG | + | chr4_1:61626303-61626322 | None:intergenic | 20.0% |
| !!! | ATCTAAAACCGATAAATAAT+TGG | - | chr4_1:61626613-61626632 | Msa0561970:CDS | 20.0% |
| !! | ACATACTATGTTACAAATAT+TGG | + | chr4_1:61627229-61627248 | None:intergenic | 20.0% |
| ! | GAATCAAAGACTAAAAATGT+TGG | - | chr4_1:61624725-61624744 | Msa0561970:three_prime_UTR | 25.0% |
| !! | TTGACTTTGACTTATAAAGT+TGG | + | chr4_1:61624822-61624841 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTTTTATAAGGGA+AGG | + | chr4_1:61624959-61624978 | None:intergenic | 25.0% |
| !!! | GAGGTTGGTTTTTTTTATAA+GGG | + | chr4_1:61624963-61624982 | None:intergenic | 25.0% |
| !!! | TGAGGTTGGTTTTTTTTATA+AGG | + | chr4_1:61624964-61624983 | None:intergenic | 25.0% |
| !!! | TTTCTGTTTTTTCTACTGTT+TGG | + | chr4_1:61625011-61625030 | None:intergenic | 25.0% |
| ! | ATTAACTTTGTAACTGTTGT+TGG | + | chr4_1:61625293-61625312 | None:intergenic | 25.0% |
| ! | TTGATTGAATTTATAGTGCT+TGG | - | chr4_1:61625931-61625950 | Msa0561970:intron | 25.0% |
| ! | AAGATAACTAAAAGTCTGTT+TGG | + | chr4_1:61626115-61626134 | None:intergenic | 25.0% |
| !!! | AACAGACTTTTAGTTATCTT+AGG | - | chr4_1:61626115-61626134 | Msa0561970:intron | 25.0% |
| ! | CTAATTGAACTAGAAACATA+GGG | + | chr4_1:61626406-61626425 | None:intergenic | 25.0% |
| ! | TCTAATTGAACTAGAAACAT+AGG | + | chr4_1:61626407-61626426 | None:intergenic | 25.0% |
| !!! | TTTGATTTGTGTGATGATAT+TGG | - | chr4_1:61626443-61626462 | Msa0561970:CDS | 25.0% |
| ! | AAAACCGATAAATAATTGGT+CGG | - | chr4_1:61626617-61626636 | Msa0561970:CDS | 25.0% |
| ! | TAACTAACAAACTAACTAAC+CGG | + | chr4_1:61626784-61626803 | None:intergenic | 25.0% |
| AGAAGAAGAATAGTCTATGA+TGG | + | chr4_1:61624798-61624817 | None:intergenic | 30.0% | |
| !!! | CATTATGAGTTGAGGTTTTT+TGG | + | chr4_1:61624900-61624919 | None:intergenic | 30.0% |
| TGAATTCACATTATGAGTTG+AGG | + | chr4_1:61624908-61624927 | None:intergenic | 30.0% | |
| GCAGTTATATTATTAGCATC+TGG | + | chr4_1:61625565-61625584 | None:intergenic | 30.0% | |
| GATGCTAATAATATAACTGC+TGG | - | chr4_1:61625565-61625584 | Msa0561970:intron | 30.0% | |
| TATGCACATATTGTTCCAAT+AGG | - | chr4_1:61625652-61625671 | Msa0561970:intron | 30.0% | |
| ATGCACATATTGTTCCAATA+GGG | - | chr4_1:61625653-61625672 | Msa0561970:intron | 30.0% | |
| GAATCTATTGCTCAAGAATA+TGG | - | chr4_1:61625685-61625704 | Msa0561970:intron | 30.0% | |
| TTGTAAGAAATTACCTGGAA+GGG | + | chr4_1:61625791-61625810 | None:intergenic | 30.0% | |
| AGCTGTTAGTTGGTTATATT+AGG | - | chr4_1:61625854-61625873 | Msa0561970:intron | 30.0% | |
| !! | GTTATATTAGGCTTTGTTAG+TGG | - | chr4_1:61625866-61625885 | Msa0561970:intron | 30.0% |
| TTGAATTTATAGTGCTTGGT+AGG | - | chr4_1:61625935-61625954 | Msa0561970:intron | 30.0% | |
| TTCTTTCAATTACGGTAACA+TGG | - | chr4_1:61625978-61625997 | Msa0561970:intron | 30.0% | |
| TCTTTCAATTACGGTAACAT+GGG | - | chr4_1:61625979-61625998 | Msa0561970:intron | 30.0% | |
| !! | TGTATGGTCATTTTATACAG+TGG | - | chr4_1:61626276-61626295 | Msa0561970:CDS | 30.0% |
| GAGTATCAAAAGTGATTCAT+TGG | - | chr4_1:61626479-61626498 | Msa0561970:CDS | 30.0% | |
| GTGTAGAAATATGTTGCATT+TGG | + | chr4_1:61626522-61626541 | None:intergenic | 30.0% | |
| TAACAACAACTTACAATGTG+AGG | - | chr4_1:61626584-61626603 | Msa0561970:intron | 30.0% | |
| CAAACCGACCAATTATTTAT+CGG | + | chr4_1:61626624-61626643 | None:intergenic | 30.0% | |
| AGAAAAAGAACAAAGATGCA+GGG | + | chr4_1:61627027-61627046 | None:intergenic | 30.0% | |
| AAGAAAAAGAACAAAGATGC+AGG | + | chr4_1:61627028-61627047 | None:intergenic | 30.0% | |
| TCTTCTATTTAGTGCTTGTT+TGG | - | chr4_1:61627132-61627151 | Msa0561970:five_prime_UTR | 30.0% | |
| AAACAAGTCACATAGATGCA+GGG | + | chr4_1:61624751-61624770 | None:intergenic | 35.0% | |
| ! | GTCTATGATGGTGATGAAAA+AGG | + | chr4_1:61624786-61624805 | None:intergenic | 35.0% |
| !!! | TTGAGGTTTTTTGGTTTGGA+TGG | + | chr4_1:61624891-61624910 | None:intergenic | 35.0% |
| !!! | TGAGTTGAGGTTTTTTGGTT+TGG | + | chr4_1:61624895-61624914 | None:intergenic | 35.0% |
| AAGGGAAGGTTTAACTAAGT+GGG | + | chr4_1:61624945-61624964 | None:intergenic | 35.0% | |
| TAAGGGAAGGTTTAACTAAG+TGG | + | chr4_1:61624946-61624965 | None:intergenic | 35.0% | |
| AAGGAAATAGCAACCTTGTT+CGG | - | chr4_1:61625217-61625236 | Msa0561970:CDS | 35.0% | |
| ! | GAAGTATCAACAGATCCAAA+CGG | - | chr4_1:61625528-61625547 | Msa0561970:intron | 35.0% |
| GATTCAATACTACTCCCTAT+TGG | + | chr4_1:61625670-61625689 | None:intergenic | 35.0% | |
| TGTAAGAAATTACCTGGAAG+GGG | + | chr4_1:61625790-61625809 | None:intergenic | 35.0% | |
| GTTGTAAGAAATTACCTGGA+AGG | + | chr4_1:61625792-61625811 | None:intergenic | 35.0% | |
| ACTACCATGTACAGTACAAT+CGG | + | chr4_1:61625816-61625835 | None:intergenic | 35.0% | |
| ! | AGTTGTGATTAGCTGTTAGT+TGG | - | chr4_1:61625844-61625863 | Msa0561970:intron | 35.0% |
| ! | CATTTTATACAGTGGTCCTA+AGG | - | chr4_1:61626284-61626303 | Msa0561970:CDS | 35.0% |
| AATATGTTGCATTTGGCACA+AGG | + | chr4_1:61626515-61626534 | None:intergenic | 35.0% | |
| AAATGTAAATGCGACTCTAC+TGG | - | chr4_1:61626558-61626577 | Msa0561970:intron | 35.0% | |
| CGTACAATTTGTGATTACAC+TGG | - | chr4_1:61626708-61626727 | Msa0561970:CDS | 35.0% | |
| AGACAAATAAGACGAGAAAG+TGG | + | chr4_1:61626986-61627005 | None:intergenic | 35.0% | |
| CAAACAAGTCACATAGATGC+AGG | + | chr4_1:61624752-61624771 | None:intergenic | 40.0% | |
| AGGGAAGGTTTAACTAAGTG+GGG | + | chr4_1:61624944-61624963 | None:intergenic | 40.0% | |
| ATCTTTGTGTGTGGTGATTG+AGG | + | chr4_1:61624982-61625001 | None:intergenic | 40.0% | |
| CAATCACCACACACAAAGAT+AGG | - | chr4_1:61624982-61625001 | Msa0561970:CDS | 40.0% | |
| TGGTTTCCTATCTTTGTGTG+TGG | + | chr4_1:61624991-61625010 | None:intergenic | 40.0% | |
| AACACCAAAACATGAGCGTA+GGG | - | chr4_1:61625035-61625054 | Msa0561970:CDS | 40.0% | |
| ! | AACACTTGCTACTACTGCAA+CGG | + | chr4_1:61625089-61625108 | None:intergenic | 40.0% |
| TTGCAGTAGTAGCAAGTGTT+GGG | - | chr4_1:61625089-61625108 | Msa0561970:intron | 40.0% | |
| ! | GAACACTTGAAGTTTGCTTC+TGG | + | chr4_1:61625136-61625155 | None:intergenic | 40.0% |
| !! | CAAGGTTGCTATTTCCTTCA+AGG | + | chr4_1:61625215-61625234 | None:intergenic | 40.0% |
| !! | GAAGTGTTTTACACCGAACA+AGG | + | chr4_1:61625233-61625252 | None:intergenic | 40.0% |
| !! | AACTGTTGTTGGTGTTGCTT+GGG | + | chr4_1:61625282-61625301 | None:intergenic | 40.0% |
| !! | TAACTGTTGTTGGTGTTGCT+TGG | + | chr4_1:61625283-61625302 | None:intergenic | 40.0% |
| TAATCCCAACCAAGTCATCA+AGG | - | chr4_1:61625309-61625328 | Msa0561970:CDS | 40.0% | |
| TTACTACATTTGCAGGGGAA+TGG | + | chr4_1:61625337-61625356 | None:intergenic | 40.0% | |
| TTCCCCTGCAAATGTAGTAA+CGG | - | chr4_1:61625337-61625356 | Msa0561970:CDS | 40.0% | |
| TTCCGTTACTACATTTGCAG+GGG | + | chr4_1:61625342-61625361 | None:intergenic | 40.0% | |
| GTTCCGTTACTACATTTGCA+GGG | + | chr4_1:61625343-61625362 | None:intergenic | 40.0% | |
| TGTTCCGTTACTACATTTGC+AGG | + | chr4_1:61625344-61625363 | None:intergenic | 40.0% | |
| ! | TGCAAATGTAGTAACGGAAC+AGG | - | chr4_1:61625343-61625362 | Msa0561970:CDS | 40.0% |
| CTAACATTGACCGTTTCAAC+AGG | - | chr4_1:61625421-61625440 | Msa0561970:CDS | 40.0% | |
| GTTGGATGTACCTGTTGAAA+CGG | + | chr4_1:61625434-61625453 | None:intergenic | 40.0% | |
| CAATCTTGTACTTGGGTACA+TGG | + | chr4_1:61625456-61625475 | None:intergenic | 40.0% | |
| ACCCAAGTACAAGATTGTAC+CGG | - | chr4_1:61625459-61625478 | Msa0561970:CDS | 40.0% | |
| ! | CTGGAATCTTATTTGCCGTT+TGG | + | chr4_1:61625546-61625565 | None:intergenic | 40.0% |
| ACAAGGCAAAGGAATCCAAA+TGG | + | chr4_1:61625596-61625615 | None:intergenic | 40.0% | |
| ! | GACCAGCTTGAAGCTTTTTA+GGG | + | chr4_1:61625753-61625772 | None:intergenic | 40.0% |
| ! | TGACCAGCTTGAAGCTTTTT+AGG | + | chr4_1:61625754-61625773 | None:intergenic | 40.0% |
| CGGAGTTGTAAGAAATTACC+TGG | + | chr4_1:61625796-61625815 | None:intergenic | 40.0% | |
| AACTCCGATTGTACTGTACA+TGG | - | chr4_1:61625809-61625828 | Msa0561970:intron | 40.0% | |
| TCTTAGGATGATCTCTTCAC+TGG | - | chr4_1:61626131-61626150 | Msa0561970:intron | 40.0% | |
| TGTACGACTACACGAATTTG+TGG | + | chr4_1:61626694-61626713 | None:intergenic | 40.0% | |
| ! | AGTGTTCTGAGTAGTAAGAG+TGG | + | chr4_1:61626757-61626776 | None:intergenic | 40.0% |
| ! | TTTTAAACAGTGCCACCTAG+TGG | - | chr4_1:61626885-61626904 | Msa0561970:CDS | 40.0% |
| TAACTCTCCTGGATGGATCA+TGG | + | chr4_1:61624696-61624715 | None:intergenic | 45.0% | |
| TGATCCATCCAGGAGAGTTA+TGG | - | chr4_1:61624696-61624715 | Msa0561970:three_prime_UTR | 45.0% | |
| TCTAGACACCATAACTCTCC+TGG | + | chr4_1:61624707-61624726 | None:intergenic | 45.0% | |
| AAGCACTAGCAGTGTGGAAT+GGG | + | chr4_1:61624867-61624886 | None:intergenic | 45.0% | |
| ! | AAAGCACTAGCAGTGTGGAA+TGG | + | chr4_1:61624868-61624887 | None:intergenic | 45.0% |
| !! | TTTAACTAAGTGGGGGCGTT+GGG | + | chr4_1:61624936-61624955 | None:intergenic | 45.0% |
| GGGAAGGTTTAACTAAGTGG+GGG | + | chr4_1:61624943-61624962 | None:intergenic | 45.0% | |
| TTGTGTGTGGTGATTGAGGT+TGG | + | chr4_1:61624978-61624997 | None:intergenic | 45.0% | |
| GAACACCAAAACATGAGCGT+AGG | - | chr4_1:61625034-61625053 | Msa0561970:CDS | 45.0% | |
| ! | TGTTCCCTACGCTCATGTTT+TGG | + | chr4_1:61625042-61625061 | None:intergenic | 45.0% |
| GGAACAAGATGGTCACTGTA+TGG | - | chr4_1:61625056-61625075 | Msa0561970:CDS | 45.0% | |
| GTTGCAGTAGTAGCAAGTGT+TGG | - | chr4_1:61625088-61625107 | Msa0561970:intron | 45.0% | |
| CACAAACGCAACAACCTTGA+AGG | - | chr4_1:61625198-61625217 | Msa0561970:CDS | 45.0% | |
| AAACACTTCCTAGACCTGCT+AGG | - | chr4_1:61625244-61625263 | Msa0561970:CDS | 45.0% | |
| !! | GGAACCTTGATGACTTGGTT+GGG | + | chr4_1:61625316-61625335 | None:intergenic | 45.0% |
| !! | TGGAACCTTGATGACTTGGT+TGG | + | chr4_1:61625317-61625336 | None:intergenic | 45.0% |
| ! | GGAATGGAACCTTGATGACT+TGG | + | chr4_1:61625321-61625340 | None:intergenic | 45.0% |
| CTTGTACTTGGGTACATGGT+TGG | + | chr4_1:61625452-61625471 | None:intergenic | 45.0% | |
| CCCGGTACAATCTTGTACTT+GGG | + | chr4_1:61625463-61625482 | None:intergenic | 45.0% | |
| CCCAAGTACAAGATTGTACC+GGG | - | chr4_1:61625460-61625479 | Msa0561970:CDS | 45.0% | |
| ACCCGGTACAATCTTGTACT+TGG | + | chr4_1:61625464-61625483 | None:intergenic | 45.0% | |
| TACAAGATTGTACCGGGTGA+TGG | - | chr4_1:61625466-61625485 | Msa0561970:CDS | 45.0% | |
| ACAAGATTGTACCGGGTGAT+GGG | - | chr4_1:61625467-61625486 | Msa0561970:CDS | 45.0% | |
| !! | TAACTGCTGGTGCTACCATT+TGG | - | chr4_1:61625578-61625597 | Msa0561970:intron | 45.0% |
| TGATCACAGCTACAAGGCAA+AGG | + | chr4_1:61625607-61625626 | None:intergenic | 45.0% | |
| TTTGCCTTGTAGCTGTGATC+AGG | - | chr4_1:61625606-61625625 | Msa0561970:intron | 45.0% | |
| GACCCTAAAAAGCTTCAAGC+TGG | - | chr4_1:61625748-61625767 | Msa0561970:intron | 45.0% | |
| GTTGCATTTGGCACAAGGAA+TGG | + | chr4_1:61626510-61626529 | None:intergenic | 45.0% | |
| TGTAAATGCGACTCTACTGG+TGG | - | chr4_1:61626561-61626580 | Msa0561970:intron | 45.0% | |
| ACTACTCAGAACACTTGTGC+CGG | - | chr4_1:61626762-61626781 | Msa0561970:CDS | 45.0% | |
| GTTCCGGTGATTCAGATTCA+GGG | - | chr4_1:61626907-61626926 | Msa0561970:CDS | 45.0% | |
| TTCCGGTGATTCAGATTCAG+GGG | - | chr4_1:61626908-61626927 | Msa0561970:CDS | 45.0% | |
| !! | ATTCAGATTCAGGGGCATCT+AGG | - | chr4_1:61626916-61626935 | Msa0561970:exon | 45.0% |
| ! | GCATCTAGGAGCATGTTGAA+TGG | - | chr4_1:61626930-61626949 | Msa0561970:five_prime_UTR | 45.0% |
| ! | TAGGAGCATGTTGAATGGCT+GGG | - | chr4_1:61626935-61626954 | Msa0561970:five_prime_UTR | 45.0% |
| GACACCATAACTCTCCTGGA+TGG | + | chr4_1:61624703-61624722 | None:intergenic | 50.0% | |
| !! | GATGGAAAGCACTAGCAGTG+TGG | + | chr4_1:61624873-61624892 | None:intergenic | 50.0% |
| ! | GTTTAACTAAGTGGGGGCGT+TGG | + | chr4_1:61624937-61624956 | None:intergenic | 50.0% |
| CATGAGCGTAGGGAACAAGA+TGG | - | chr4_1:61625045-61625064 | Msa0561970:CDS | 50.0% | |
| ! | TGCGTTTGTGCTGGTGTAGT+CGG | + | chr4_1:61625188-61625207 | None:intergenic | 50.0% |
| CAAGGTTGTTGCGTTTGTGC+TGG | + | chr4_1:61625197-61625216 | None:intergenic | 50.0% | |
| TGTTAGCTCCTAGCAGGTCT+AGG | + | chr4_1:61625255-61625274 | None:intergenic | 50.0% | |
| !! | TGTTGTTGGTGTTGCTTGGG+AGG | + | chr4_1:61625279-61625298 | None:intergenic | 50.0% |
| TGGATGCAATAGCGAGGGTT+CGG | - | chr4_1:61625491-61625510 | Msa0561970:intron | 50.0% | |
| ! | AATAGCGAGGGTTCGGTTTG+CGG | - | chr4_1:61625498-61625517 | Msa0561970:intron | 50.0% |
| CTTCTTGATGTTCCCCTTCC+AGG | - | chr4_1:61625775-61625794 | Msa0561970:intron | 50.0% | |
| !! | GCTTCTCGGTTCTGAAGCTA+TGG | + | chr4_1:61626160-61626179 | None:intergenic | 50.0% |
| AGCTTCAGAACCGAGAAGCA+TGG | - | chr4_1:61626161-61626180 | Msa0561970:intron | 50.0% | |
| TTGGGCTCTACCATGCTTCT+CGG | + | chr4_1:61626174-61626193 | None:intergenic | 50.0% | |
| !! | TTGGTCGGTTTGTCCGTCTA+TGG | - | chr4_1:61626632-61626651 | Msa0561970:CDS | 50.0% |
| TGTCCGTCTATGGAATGCTC+CGG | - | chr4_1:61626642-61626661 | Msa0561970:CDS | 50.0% | |
| TCTGAATCACCGGAACCACT+AGG | + | chr4_1:61626903-61626922 | None:intergenic | 50.0% | |
| GGTTCCGGTGATTCAGATTC+AGG | - | chr4_1:61626906-61626925 | Msa0561970:CDS | 50.0% | |
| TGCCCCTGAATCTGAATCAC+CGG | + | chr4_1:61626913-61626932 | None:intergenic | 50.0% | |
| ! | CTAGGAGCATGTTGAATGGC+TGG | - | chr4_1:61626934-61626953 | Msa0561970:five_prime_UTR | 50.0% |
| GTCGGCTAAACTACGACACG+TGG | + | chr4_1:61625170-61625189 | None:intergenic | 55.0% | |
| GGAGGTTGTTAGCTCCTAGC+AGG | + | chr4_1:61625261-61625280 | None:intergenic | 55.0% | |
| ATTGCATCCAGCCCATCACC+CGG | + | chr4_1:61625481-61625500 | None:intergenic | 55.0% | |
| !! | ATGGGCTGGATGCAATAGCG+AGG | - | chr4_1:61625485-61625504 | Msa0561970:CDS | 55.0% |
| ! | TGGGCTGGATGCAATAGCGA+GGG | - | chr4_1:61625486-61625505 | Msa0561970:intron | 55.0% |
| ! | ATAGCGAGGGTTCGGTTTGC+GGG | - | chr4_1:61625499-61625518 | Msa0561970:intron | 55.0% |
| GCCTTGTAGCTGTGATCAGG+CGG | - | chr4_1:61625609-61625628 | Msa0561970:intron | 55.0% | |
| TCCGCCTGATCACAGCTACA+AGG | + | chr4_1:61625613-61625632 | None:intergenic | 55.0% | |
| TGTAGCTGTGATCAGGCGGA+TGG | - | chr4_1:61625613-61625632 | Msa0561970:intron | 55.0% | |
| GTAGCTGTGATCAGGCGGAT+GGG | - | chr4_1:61625614-61625633 | Msa0561970:intron | 55.0% | |
| GTCCGTCTATGGAATGCTCC+GGG | - | chr4_1:61626643-61626662 | Msa0561970:CDS | 55.0% | |
| ! | CTCCCGGAGCATTCCATAGA+CGG | + | chr4_1:61626648-61626667 | None:intergenic | 55.0% |
| GTTCCCAAGCATCACACTCC+CGG | + | chr4_1:61626664-61626683 | None:intergenic | 55.0% | |
| ACAGTGCCACCTAGTGGTTC+CGG | - | chr4_1:61626891-61626910 | Msa0561970:CDS | 55.0% | |
| GAATCACCGGAACCACTAGG+TGG | + | chr4_1:61626900-61626919 | None:intergenic | 55.0% | |
| !! | GATTGTACCGGGTGATGGGC+TGG | - | chr4_1:61625471-61625490 | Msa0561970:CDS | 60.0% |
| ! | GAGGGTTCGGTTTGCGGGTT+TGG | - | chr4_1:61625504-61625523 | Msa0561970:intron | 60.0% |
| ! | TGCTCCGGGAGTGTGATGCT+TGG | - | chr4_1:61626657-61626676 | Msa0561970:CDS | 60.0% |
| ! | GCTCCGGGAGTGTGATGCTT+GGG | - | chr4_1:61626658-61626677 | Msa0561970:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 61624693 | 61627280 | 61624693 | ID=Msa0561970;Name=Msa0561970 |
| chr4_1 | mRNA | 61624693 | 61627280 | 61624693 | ID=Msa0561970-mRNA-1;Parent=Msa0561970;Name=Msa0561970-mRNA-1;_AED=0.05;_eAED=0.05;_QI=353|1|1|1|1|1|4|264|369 |
| chr4_1 | exon | 61624693 | 61625078 | 61624693 | ID=Msa0561970-mRNA-1:exon:19410;Parent=Msa0561970-mRNA-1 |
| chr4_1 | exon | 61625190 | 61625504 | 61625190 | ID=Msa0561970-mRNA-1:exon:19409;Parent=Msa0561970-mRNA-1 |
| chr4_1 | exon | 61626177 | 61626530 | 61626177 | ID=Msa0561970-mRNA-1:exon:19408;Parent=Msa0561970-mRNA-1 |
| chr4_1 | exon | 61626609 | 61627280 | 61626609 | ID=Msa0561970-mRNA-1:exon:19407;Parent=Msa0561970-mRNA-1 |
| chr4_1 | five_prime_UTR | 61626928 | 61627280 | 61626928 | ID=Msa0561970-mRNA-1:five_prime_utr;Parent=Msa0561970-mRNA-1 |
| chr4_1 | CDS | 61626609 | 61626927 | 61626609 | ID=Msa0561970-mRNA-1:cds;Parent=Msa0561970-mRNA-1 |
| chr4_1 | CDS | 61626177 | 61626530 | 61626177 | ID=Msa0561970-mRNA-1:cds;Parent=Msa0561970-mRNA-1 |
| chr4_1 | CDS | 61625190 | 61625504 | 61625190 | ID=Msa0561970-mRNA-1:cds;Parent=Msa0561970-mRNA-1 |
| chr4_1 | CDS | 61624957 | 61625078 | 61624957 | ID=Msa0561970-mRNA-1:cds;Parent=Msa0561970-mRNA-1 |
| chr4_1 | three_prime_UTR | 61624693 | 61624956 | 61624693 | ID=Msa0561970-mRNA-1:three_prime_utr;Parent=Msa0561970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
