AlfalfaGEDB | Msa0224130

M. sativa cultivar zhongmu-4 / Msa0224130

KEGG: K01530
GO: GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791
PFAM: PF16209.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0224130	XP_003597568.1	96.880	1250	13	1	1	1250	1	1224	0.0	2513

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0224130	sp\|Q9LNQ4\|ALA4_ARATH	73.976	1245	279	7	6	1248	5	1206	0.0	1906

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0224130	G7IS39	96.880	1250	13	1	1	1250	1	1224	0.0	2513

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001380	Msa0224130	0.825041	5.818409e-54	-8.615850e-47
Msa0001550	Msa0224130	-0.808487	3.023429e-50	-8.615850e-47
Msa0001830	Msa0224130	0.806264	8.950475e-50	-8.615850e-47
Msa0004480	Msa0224130	0.858123	1.022163e-62	-8.615850e-47
Msa0006060	Msa0224130	0.810325	1.219043e-50	-8.615850e-47
Msa0011050	Msa0224130	0.819903	9.092872e-53	-8.615850e-47
Msa0023060	Msa0224130	0.809761	1.612792e-50	-8.615850e-47
Msa0026630	Msa0224130	0.852206	5.372901e-61	-8.615850e-47
Msa0033840	Msa0224130	-0.807489	4.929063e-50	-8.615850e-47
Msa0043850	Msa0224130	0.838861	2.235589e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0224130	MtrunA17_Chr2g0329991	96.880	1250	13	1	1	1250	1	1224	2513
Msa0224130	MtrunA17_Chr8g0342811	81.621	1246	200	4	6	1249	5	1223	2146
Msa0224130	MtrunA17_Chr4g0062251	55.170	1238	485	9	8	1231	6	1187	1375
Msa0224130	MtrunA17_Chr8g0368691	54.104	1255	501	12	10	1241	8	1210	1370
Msa0224130	MtrunA17_Chr6g0450601	54.076	1239	487	9	8	1216	6	1192	1343
Msa0224130	MtrunA17_Chr0c05g0492131	53.376	1244	503	12	7	1234	1	1183	1322
Msa0224130	MtrunA17_Chr3g0091611	54.050	1210	478	12	10	1203	5	1152	1315
Msa0224130	MtrunA17_Chr5g0415271	43.401	1182	582	15	35	1200	19	1129	954
Msa0224130	MtrunA17_Chr8g0363911	43.423	1186	578	18	35	1202	39	1149	944
Msa0224130	MtrunA17_Chr7g0244991	35.004	1217	643	26	40	1199	142	1267	655

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0224130	AT1G17500.2	73.976	1245	279	7	6	1248	5	1206	1906
Msa0224130	AT1G17500.1	73.976	1245	279	7	6	1248	5	1206	1906
Msa0224130	AT1G54280.2	72.603	1241	308	5	14	1248	13	1227	1883
Msa0224130	AT1G54280.3	72.603	1241	308	5	14	1248	13	1227	1883
Msa0224130	AT1G54280.1	72.603	1241	308	5	14	1248	13	1227	1883
Msa0224130	AT1G72700.1	73.012	1245	303	6	6	1248	5	1218	1881
Msa0224130	AT1G72700.3	73.012	1245	303	6	6	1248	5	1218	1881
Msa0224130	AT1G72700.2	73.012	1245	303	6	6	1248	5	1218	1881
Msa0224130	AT3G13900.1	72.669	1244	300	7	14	1248	13	1225	1865
Msa0224130	AT3G13900.2	75.026	945	221	7	14	949	13	951	1444

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Find 345 sgRNAs with CRISPR-Local

Find 552 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCCAAGTGAAATGAC+AGG	0.594056	2_1:+73887922	None:intergenic
AAAAGAAGGGTAAAGCGCCA+TGG	0.579312	2_1:-73891729	Msa0224130:CDS
AAAAGCTCCATCATTATCAA+GGG	0.594733	2_1:+73892524	None:intergenic
AAACATAATAGCATTGTATT+TGG	0.263696	2_1:+73892968	None:intergenic
AAACCAAATCCCTTTATGGC+AGG	0.543947	2_1:+73891634	None:intergenic
AAAGAAGGGTAAAGCGCCAT+GGG	0.570699	2_1:-73891728	Msa0224130:CDS
AAAGAGAGTTGATTCTTGTT+GGG	0.393775	2_1:-73890561	Msa0224130:CDS
AAAGCGCCATGGGAAAATGT+TGG	0.592260	2_1:-73891718	Msa0224130:CDS
AAAGGAGCAATCATGCTCAG+TGG	0.685530	2_1:+73892849	None:intergenic
AAAGGGGCGCGTGAATGTAT+TGG	0.490707	2_1:+73893936	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGAAAAATTGGGAAAACA+CGG	+	chr2_1:73886698-73886717	None:intergenic	30.0%
ACTAATCTGCAGGAAATTAA+GGG	+	chr2_1:73886878-73886897	None:intergenic	30.0%
TACTAATCTGCAGGAAATTA+AGG	+	chr2_1:73886879-73886898	None:intergenic	30.0%
TTTCCTAGGGGAAAATATTT+AGG	-	chr2_1:73887634-73887653	Msa0224130:CDS	30.0%
GATTAACCTTAACATCTTGA+AGG	+	chr2_1:73888123-73888142	None:intergenic	30.0%
GGATATAGTGAAAGTAGAAA+AGG	-	chr2_1:73888213-73888232	Msa0224130:CDS	30.0%
AAAAGCTCCATCATTATCAA+GGG	+	chr2_1:73888368-73888387	None:intergenic	30.0%
TAAAAGCTCCATCATTATCA+AGG	+	chr2_1:73888369-73888388	None:intergenic	30.0%
AAGTGTAAAGATTGGGATTT+GGG	+	chr2_1:73888423-73888442	None:intergenic	30.0%
AAAGTGTAAAGATTGGGATT+TGG	+	chr2_1:73888424-73888443	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	73886663	73894248	73886663	ID=Msa0224130;Name=Msa0224130
chr2_1	mRNA	73886663	73894248	73886663	ID=Msa0224130-mRNA-1;Parent=Msa0224130;Name=Msa0224130-mRNA-1;_AED=0.05;_eAED=0.05;_QI=548\|0.9\|0.90\|1\|0.9\|0.81\|11\|477\|1250
chr2_1	exon	73886663	73887802	73886663	ID=Msa0224130-mRNA-1:exon:21799;Parent=Msa0224130-mRNA-1
chr2_1	exon	73887888	73888079	73887888	ID=Msa0224130-mRNA-1:exon:21798;Parent=Msa0224130-mRNA-1
chr2_1	exon	73888170	73888346	73888170	ID=Msa0224130-mRNA-1:exon:21797;Parent=Msa0224130-mRNA-1
chr2_1	exon	73889215	73889340	73889215	ID=Msa0224130-mRNA-1:exon:21796;Parent=Msa0224130-mRNA-1
chr2_1	exon	73889848	73890057	73889848	ID=Msa0224130-mRNA-1:exon:21795;Parent=Msa0224130-mRNA-1
chr2_1	exon	73890143	73890230	73890143	ID=Msa0224130-mRNA-1:exon:21794;Parent=Msa0224130-mRNA-1
chr2_1	exon	73890357	73890445	73890357	ID=Msa0224130-mRNA-1:exon:21793;Parent=Msa0224130-mRNA-1
chr2_1	exon	73890528	73890804	73890528	ID=Msa0224130-mRNA-1:exon:21792;Parent=Msa0224130-mRNA-1
chr2_1	exon	73891104	73891214	73891104	ID=Msa0224130-mRNA-1:exon:21791;Parent=Msa0224130-mRNA-1
chr2_1	exon	73891367	73893320	73891367	ID=Msa0224130-mRNA-1:exon:21790;Parent=Msa0224130-mRNA-1
chr2_1	exon	73893835	73894248	73893835	ID=Msa0224130-mRNA-1:exon:21789;Parent=Msa0224130-mRNA-1
chr2_1	five_prime_UTR	73893835	73894248	73893835	ID=Msa0224130-mRNA-1:five_prime_utr;Parent=Msa0224130-mRNA-1
chr2_1	five_prime_UTR	73893187	73893320	73893187	ID=Msa0224130-mRNA-1:five_prime_utr;Parent=Msa0224130-mRNA-1
chr2_1	CDS	73891367	73893186	73891367	ID=Msa0224130-mRNA-1:cds;Parent=Msa0224130-mRNA-1
chr2_1	CDS	73891104	73891214	73891104	ID=Msa0224130-mRNA-1:cds;Parent=Msa0224130-mRNA-1
chr2_1	CDS	73890528	73890804	73890528	ID=Msa0224130-mRNA-1:cds;Parent=Msa0224130-mRNA-1
chr2_1	CDS	73890357	73890445	73890357	ID=Msa0224130-mRNA-1:cds;Parent=Msa0224130-mRNA-1
chr2_1	CDS	73890143	73890230	73890143	ID=Msa0224130-mRNA-1:cds;Parent=Msa0224130-mRNA-1
chr2_1	CDS	73889848	73890057	73889848	ID=Msa0224130-mRNA-1:cds;Parent=Msa0224130-mRNA-1
chr2_1	CDS	73889215	73889340	73889215	ID=Msa0224130-mRNA-1:cds;Parent=Msa0224130-mRNA-1
chr2_1	CDS	73888170	73888346	73888170	ID=Msa0224130-mRNA-1:cds;Parent=Msa0224130-mRNA-1
chr2_1	CDS	73887888	73888079	73887888	ID=Msa0224130-mRNA-1:cds;Parent=Msa0224130-mRNA-1
chr2_1	CDS	73887140	73887802	73887140	ID=Msa0224130-mRNA-1:cds;Parent=Msa0224130-mRNA-1
chr2_1	three_prime_UTR	73886663	73887139	73886663	ID=Msa0224130-mRNA-1:three_prime_utr;Parent=Msa0224130-mRNA-1

Gene Sequence

>Msa0224130

ATGCCACGGGTGAGGAGGATTAGGGCAAAGCTCCGGTGGAGCAATCTTTACACGTTTGGTTGTCTTCGGCCGAATACTGCCGATGAGGTGCCTCATCCACTTCAAGGTCCCGGTTACTCGAGAACCGTGTATTGCAACCAGCCTCAAATCCATGAAAAGAAATCTTTATTTTACTGCAAGAATAATATATCAACGACCAAATACAATGCTATTATGTTTTTTCCTAAGGCGCTGTTTGAACAGTTTCGAAGGGTTGCTAATATATACTTCCTTTTGGCTGCTTGCCTCTCGTTATCGCCAATTTCACCTTTCAGTCCACTGAGCATGATTGCTCCTTTGGCTTTTGTTGTGGGGCTTAGTATGGCAAAGGAAGCACTGGAGGATTCACGTAGGTTCCTTCAAGATGTTAAGGTTAATCGCCGGAAAGCTAGTTTCCATAAAGGCAATGGCGTTTTTGGTCTCAAGTCGTGGCAGAAAATTATGGTTGGGGATATAGTGAAAGTAGAAAAGGATCAATTTTTTCCAGCTGACTTGCTTCTATTGTCTTCAAGTTACGAGGATGGGATATGCTATGTGGAAACCATGAATTTAGATGGAGAGACCAACTTGAAGGTGAAAAGATCATTGGAGGCTACCTTTTCCCTTGATAATGATGGAGCTTTTAAGGATTTCTCTGGAACAATACGTTGCGAAGACCCAAATCCCAATCTTTACACTTTTGTTGGGAACTTTGAGTACGAACGTCAGGTTTATCCTCTTGATCCTGGTCATATACTCCTCCGAGATTCAAAGCTCAGGAACACAGAGTATGTCTATGGGGTGGTCATTTTCACTGGCCACGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGAAGCAGAATAGAGAAAAAGATGGATTATATCATATACACTCTTTTCTCTGTCCTTATAGCGATATCATTTATTAGTTCAGTAGGATTTGTTGTTAAGACTAAGTATGAGACCCCAAAGTGGTGGTATTTACGGCCCGACCAGATTGAATATCAGTATGATCCTAAGAAACTTGGATTTGCTGGGATGAGCCATCTGATCACTGCTCTTATTCTTTATGGATATTTGATACCCATCTCTCTCTATGTTTCAATTGAGGTTGTGAAGGTATTACAGGCCAGGTTCATTAACCAAGACCTTCACATGTATGATGAAGAAACCGGGACTCCTGCTGAAGCACGGACGTCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACCATCCTCTCTGATAAAACTGGAACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCCATTGCTGGAACTTCCTATGGTGTACGTTCCAGTGAAGTTGAACTTGCTGCAGCAAAGCAGATGGCTACTGATCTTGAGGAGGAAGATTTTGATCTCTCTAATTTCCCCATGCAAAAGAAGGGTAAAGCGCCATGGGAAAATGTTGGAAGAGCTGAAGAAATTGAACTTGAGACAGTTGTTACTTCTAAGGATGGTGAGGATCAAAGGCCTGCCATAAAGGGATTTGGTTTTGATGACAGCCGGCTCATGAATGGTAATTGGTCGAAAGATCCCAATGCTGAAGTCATTTTGTTGTTTTTCCGGATACTAGCTGTTTGCCATACTGCCATTCCCGAGCTTAATGAGGAGAGCAACAGCTGTACTTATGAAGCTGAATCACCTGATGAAGGGGCTTTTCTTGTAGCTGCTAGAGAATTTGGTTTTCAATTTTGTAGAAGAACCCAATCAAGTGTTGTCGTACGCGAAAGAATTTCTGCTTCTGGACAAGTGGTTGAAAGAGAGTATAAAATACTGAATCTGCTGGAATTTACTAGCAAAAGAAAGCGTATGTCAGTGATTGTACGTGATGAGGAGGGAAACATTATTCTTTTCTGCAAAGGAGCTGACAGTATCATATTTGATAGATTATCTAAGAATGGAAAGAAGTATTTGGAGACTACTTCTAGGCATTTGAATGAATATGGAGAGGTGGGTTTGAGAACATTAGCCCTGGCTTACAGAAAGCTTGATGAACAAGAGTACTCTGATTGGAACAACGAGTTTCAGAAAGCTAAGACAGCTGTTGGGCCTGATAGAGAGGCAATGCTTGAGAAGGTATCAGATAGTATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCTGTGGAAGACAAGCTGCAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCAAGCTGGTCTCAAGATCTGGGTCTTGACAGGGGATAAGATGGAAACTGCAATCAACATCGGATTTGCATGTAGTTTACTTCGACAGGGCATGAAGCAAATCTGTATCTCTACTACAAATTCAGAATCAGTGATCAATGATGGGAAAGAGGCAATCAAAAGCAACATCTTGACTCAAATCACCAATGCCTCACAATTGATGAATCTGGAGAAGGACCCACATGCCGCTTTTGCATTAATTATTGACGGAAAAACTCTAACATATGCTTTAGAAGATGATATCAAACACCAATTTTTGGGATTAGCTGTTAATTGTGCATCTGTCATTTGCTGCCGTGTATCTCCCAAGCAAAAGGCCCTGGTAACAAGGTTAGTGAAAGAAGGGACTGGGAAGACCACTTTAGCAATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCTGACATTGGTGTTGGAATCAGCGGGGTTGAAGGTATGCAGGCGGTGATGGCTAGTGACTTTTCCATTGCTCAATTTCGGTTTTTGGAGCGGCTTCTGGTAGTCCATGGACACTGGTGTTACAAGAGAATTGCACAAATGGTAATTGGCATATGCATCTTAAATCTTGATTGTTATTCTCAGATTTTGAATGTCTTTCCTGCTTGTGCTGCTCATCCTATATGTTATTTCTTCTACAAAAATATAGCATTTGGCCTCACAATATTCTATTTTGAGGCCTTTGCGGGCTTCTCTGGTCAATCGGTTTATAATGATTGGTACATGATATTGTTTAACGTCATTCTTACATCGTTGCCTGTCATTTCACTTGGAGTTTTTGAACAAGATGTGCCATCTGAAGTTTGCTTACAGTTTCCTGCACTATATCAGCAAGGACCCAAAAATTTGTTCTTTGACTGGTATAGAATATTGGGATGGATGGGGAATGGTCTGTACTCCTCCCTCGCCATCTTCTTCCTTGTCATCATCATCTTCCATGACCAAGCATTTCGTCTGAATGGCCAGACTGCAGACATGGCTGCTGTTGGTACCACAATGTTCACCTGCATTATCTGGGCTGTCAACTGCCAGATTGCCTTGACAATGAGCCATTTTACATGGATACAACACCTCTTTGTGTGGGGCAGCATAGCCAGTTGGTACCTGTTTCTCTTATTATATGGCATGCTTTCTCCACATTATTCCATGACTGCGTACCAAATATTGGTTGAAGTGCTTGCTCCCGCTCCTATTTATTGGACAGCAACCATTTTAGTAACTGTTACATGCAATCTTCCTTATCTTGCCCACATATCGTTCCAAAGGTGTTTTAATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTACAAGAAGGACGTTGAAGATCAACACATGTGGACGAGGGAGCGGTCTAAAGCAAGACAAGAAACAAAGATTGGATTCACAGCAAGAGTGGAAGCAACGATCAGGCAGCTGAAGGGGAAGTTGCAGAAGAAGCAAACATCAGGAGGGGTTTTTTCCCCATCATGA

Protein sequence

>Msa0224130

MPRVRRIRAKLRWSNLYTFGCLRPNTADEVPHPLQGPGYSRTVYCNQPQIHEKKSLFYCKNNISTTKYNAIMFFPKALFEQFRRVANIYFLLAACLSLSPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFLQDVKVNRRKASFHKGNGVFGLKSWQKIMVGDIVKVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLEATFSLDNDGAFKDFSGTIRCEDPNPNLYTFVGNFEYERQVYPLDPGHILLRDSKLRNTEYVYGVVIFTGHDSKVMQNSTKSPSKRSRIEKKMDYIIYTLFSVLIAISFISSVGFVVKTKYETPKWWYLRPDQIEYQYDPKKLGFAGMSHLITALILYGYLIPISLYVSIEVVKVLQARFINQDLHMYDEETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTSYGVRSSEVELAAAKQMATDLEEEDFDLSNFPMQKKGKAPWENVGRAEEIELETVVTSKDGEDQRPAIKGFGFDDSRLMNGNWSKDPNAEVILLFFRILAVCHTAIPELNEESNSCTYEAESPDEGAFLVAAREFGFQFCRRTQSSVVVRERISASGQVVEREYKILNLLEFTSKRKRMSVIVRDEEGNIILFCKGADSIIFDRLSKNGKKYLETTSRHLNEYGEVGLRTLALAYRKLDEQEYSDWNNEFQKAKTAVGPDREAMLEKVSDSMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICISTTNSESVINDGKEAIKSNILTQITNASQLMNLEKDPHAAFALIIDGKTLTYALEDDIKHQFLGLAVNCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMVIGICILNLDCYSQILNVFPACAAHPICYFFYKNIAFGLTIFYFEAFAGFSGQSVYNDWYMILFNVILTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLAIFFLVIIIFHDQAFRLNGQTADMAAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSIASWYLFLLLYGMLSPHYSMTAYQILVEVLAPAPIYWTATILVTVTCNLPYLAHISFQRCFNPMDHHIIQEIKYYKKDVEDQHMWTRERSKARQETKIGFTARVEATIRQLKGKLQKKQTSGGVFSPS*