Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562910 | XP_024627676.1 | 93.548 | 248 | 9 | 1 | 1 | 241 | 1 | 248 | 1.84e-169 | 477 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562910 | A0A072U3V5 | 93.548 | 248 | 9 | 1 | 1 | 241 | 1 | 248 | 8.81e-170 | 477 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0562910 | Msa0699970 | 0.881265 | 2.772029e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562910 | MtrunA17_Chr8g0376721 | 93.548 | 248 | 9 | 1 | 1 | 241 | 1 | 248 | 1.70e-173 | 477 |
| Msa0562910 | MtrunA17_Chr2g0285421 | 69.196 | 224 | 67 | 2 | 2 | 224 | 1 | 223 | 3.51e-114 | 327 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCAGGCCTTTGCTTAA+AGG | 0.202937 | 4_1:+63173413 | Msa0562910:CDS |
| TAAATCCAGATTATAGAAAT+TGG | 0.211714 | 4_1:+63173505 | Msa0562910:CDS |
| ATCATACTTCATCATGTTAA+TGG | 0.223361 | 4_1:-63173553 | None:intergenic |
| ATGCAATCCTTGCAATATTT+AGG | 0.247387 | 4_1:+63173364 | Msa0562910:CDS |
| ATCATCCAATTTCTATAATC+TGG | 0.269076 | 4_1:-63173510 | None:intergenic |
| AATTCAGGCCTTTGCTTAAA+GGG | 0.281424 | 4_1:+63173414 | Msa0562910:CDS |
| CAAGAGTATCCATGGAAATA+TGG | 0.330050 | 4_1:+63172602 | Msa0562910:CDS |
| TTGCATAGCACAAATCATTA+AGG | 0.358283 | 4_1:-63173347 | None:intergenic |
| ATTTGTGACTATTGAGTTCA+TGG | 0.370041 | 4_1:-63173316 | None:intergenic |
| ACATGAATGCATACAACATT+AGG | 0.391046 | 4_1:-63173447 | None:intergenic |
| TGTACTGATACTAGATCATA+TGG | 0.393061 | 4_1:+63172729 | Msa0562910:intron |
| TCCTCACGTGCTGAGAATCT+TGG | 0.396867 | 4_1:+63172558 | Msa0562910:CDS |
| TTTCGAGTGGTATATGTTAG+TGG | 0.405631 | 4_1:+63173579 | Msa0562910:CDS |
| GTTTGATTTCATGAATAAGA+TGG | 0.454595 | 4_1:-63172530 | None:intergenic |
| TGATACTAGATCATATGGTT+TGG | 0.460097 | 4_1:+63172734 | Msa0562910:intron |
| AAAACGGTCTTATGATGAAA+AGG | 0.477023 | 4_1:+63172766 | Msa0562910:CDS |
| ATGGAGAACCGTTCAAGATA+AGG | 0.494548 | 4_1:-63173534 | None:intergenic |
| TATTTCCTCAATGCATATGC+TGG | 0.506807 | 4_1:+63173240 | Msa0562910:CDS |
| GGATGATTCCTTATCTTGAA+CGG | 0.529425 | 4_1:+63173526 | Msa0562910:CDS |
| GCTAATGCATGTAACAAGAA+TGG | 0.535827 | 4_1:+63173200 | Msa0562910:CDS |
| AGATCATATGGTTTGGAGCA+TGG | 0.539450 | 4_1:+63172741 | Msa0562910:intron |
| ATTCTCCAGCATATGCATTG+AGG | 0.539548 | 4_1:-63173245 | None:intergenic |
| TGGTCAACAATTACTACAGT+TGG | 0.545716 | 4_1:-63172510 | None:intergenic |
| TGTAACAAGAATGGCTGTCT+TGG | 0.548408 | 4_1:+63173209 | Msa0562910:CDS |
| TCTATACTCAAGAGTATCCA+TGG | 0.558936 | 4_1:+63172594 | Msa0562910:CDS |
| ATATATATACCATATTTCCA+TGG | 0.601472 | 4_1:-63172611 | None:intergenic |
| AACGTGACCTAAATATTGCA+AGG | 0.604286 | 4_1:-63173371 | None:intergenic |
| AATGAAGAAGAGAGTAGACA+TGG | 0.628824 | 4_1:+63173633 | Msa0562910:CDS |
| TCTTCTTCATTATAATCACA+AGG | 0.636274 | 4_1:-63173621 | None:intergenic |
| ACCAAGATTCTCAGCACGTG+AGG | 0.657985 | 4_1:-63172559 | None:intergenic |
| TATGCTGGAGAATCAAGAGA+TGG | 0.661834 | 4_1:+63173255 | Msa0562910:CDS |
| ATGTTGTATGCATTCATGTG+TGG | 0.683428 | 4_1:+63173451 | Msa0562910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGATATTCTGTAATATT+AGG | - | chr4_1:63173120-63173139 | None:intergenic | 15.0% |
| !! | TATAGATATTCTGTAATATT+AGG | - | chr4_1:63173120-63173139 | None:intergenic | 15.0% |
| !! | ATATATATACCATATTTCCA+TGG | - | chr4_1:63172614-63172633 | None:intergenic | 20.0% |
| !! | AAAACTAGAGAAATTAAAGA+TGG | - | chr4_1:63172639-63172658 | None:intergenic | 20.0% |
| !!! | GTTTAAGTTTTCTTGTATTT+TGG | + | chr4_1:63172686-63172705 | Msa0562910:intron | 20.0% |
| !!! | GAAAGAATATTAATTTTCGT+TGG | - | chr4_1:63173029-63173048 | None:intergenic | 20.0% |
| !!! | TCAACTATAAATTTTAGTAC+AGG | + | chr4_1:63173282-63173301 | Msa0562910:CDS | 20.0% |
| !! | TAAATCCAGATTATAGAAAT+TGG | + | chr4_1:63173505-63173524 | Msa0562910:CDS | 20.0% |
| !! | ATATATATACCATATTTCCA+TGG | - | chr4_1:63172614-63172633 | None:intergenic | 20.0% |
| !! | AAAACTAGAGAAATTAAAGA+TGG | - | chr4_1:63172639-63172658 | None:intergenic | 20.0% |
| !!! | GTTTAAGTTTTCTTGTATTT+TGG | + | chr4_1:63172686-63172705 | Msa0562910:intron | 20.0% |
| !!! | GAAAGAATATTAATTTTCGT+TGG | - | chr4_1:63173029-63173048 | None:intergenic | 20.0% |
| !!! | TCAACTATAAATTTTAGTAC+AGG | + | chr4_1:63173282-63173301 | Msa0562910:CDS | 20.0% |
| !! | TAAATCCAGATTATAGAAAT+TGG | + | chr4_1:63173505-63173524 | Msa0562910:CDS | 20.0% |
| !! | GTTTGATTTCATGAATAAGA+TGG | - | chr4_1:63172533-63172552 | None:intergenic | 25.0% |
| ! | TAAACAGTATACTTAGAAGT+TGG | - | chr4_1:63172671-63172690 | None:intergenic | 25.0% |
| ! | AAAGTCTACTTTAAACAAGA+AGG | - | chr4_1:63172854-63172873 | None:intergenic | 25.0% |
| !!! | TGAGGAATGTTACTTATTTT+TGG | + | chr4_1:63172896-63172915 | Msa0562910:intron | 25.0% |
| ! | ATCATCCAATTTCTATAATC+TGG | - | chr4_1:63173513-63173532 | None:intergenic | 25.0% |
| ! | ATCATACTTCATCATGTTAA+TGG | - | chr4_1:63173556-63173575 | None:intergenic | 25.0% |
| ! | TCTTCTTCATTATAATCACA+AGG | - | chr4_1:63173624-63173643 | None:intergenic | 25.0% |
| !! | GTTTGATTTCATGAATAAGA+TGG | - | chr4_1:63172533-63172552 | None:intergenic | 25.0% |
| ! | TAAACAGTATACTTAGAAGT+TGG | - | chr4_1:63172671-63172690 | None:intergenic | 25.0% |
| ! | AAAGTCTACTTTAAACAAGA+AGG | - | chr4_1:63172854-63172873 | None:intergenic | 25.0% |
| !!! | TGAGGAATGTTACTTATTTT+TGG | + | chr4_1:63172896-63172915 | Msa0562910:intron | 25.0% |
| ! | ATCATCCAATTTCTATAATC+TGG | - | chr4_1:63173513-63173532 | None:intergenic | 25.0% |
| ! | ATCATACTTCATCATGTTAA+TGG | - | chr4_1:63173556-63173575 | None:intergenic | 25.0% |
| ! | TCTTCTTCATTATAATCACA+AGG | - | chr4_1:63173624-63173643 | None:intergenic | 25.0% |
| !! | AGATTTTAGCAACAAGGATT+TGG | + | chr4_1:63172464-63172483 | Msa0562910:CDS | 30.0% |
| ! | TGTACTGATACTAGATCATA+TGG | + | chr4_1:63172729-63172748 | Msa0562910:intron | 30.0% |
| TGATACTAGATCATATGGTT+TGG | + | chr4_1:63172734-63172753 | Msa0562910:intron | 30.0% | |
| ! | AAAACGGTCTTATGATGAAA+AGG | + | chr4_1:63172766-63172785 | Msa0562910:CDS | 30.0% |
| TAAATGTGAAGTAGTAGTGA+GGG | - | chr4_1:63172823-63172842 | None:intergenic | 30.0% | |
| ATAAATGTGAAGTAGTAGTG+AGG | - | chr4_1:63172824-63172843 | None:intergenic | 30.0% | |
| !!! | GTTACTTATTTTTGGTCATG+AGG | + | chr4_1:63172904-63172923 | Msa0562910:intron | 30.0% |
| TCCCTCATATTAAGATGTTA+GGG | - | chr4_1:63172958-63172977 | None:intergenic | 30.0% | |
| AAAATGTCCATAAAGAGATG+TGG | - | chr4_1:63172988-63173007 | None:intergenic | 30.0% | |
| ATTTGTGACTATTGAGTTCA+TGG | - | chr4_1:63173319-63173338 | None:intergenic | 30.0% | |
| TTGCATAGCACAAATCATTA+AGG | - | chr4_1:63173350-63173369 | None:intergenic | 30.0% | |
| ATGCAATCCTTGCAATATTT+AGG | + | chr4_1:63173364-63173383 | Msa0562910:CDS | 30.0% | |
| ! | TGAATTTTTGCCCTCTATTT+GGG | - | chr4_1:63173400-63173419 | None:intergenic | 30.0% |
| ACATGAATGCATACAACATT+AGG | - | chr4_1:63173450-63173469 | None:intergenic | 30.0% | |
| !!! | GAAGTATGATATTTTTCGAG+TGG | + | chr4_1:63173566-63173585 | Msa0562910:CDS | 30.0% |
| !! | AGATTTTAGCAACAAGGATT+TGG | + | chr4_1:63172464-63172483 | Msa0562910:CDS | 30.0% |
| ! | TGTACTGATACTAGATCATA+TGG | + | chr4_1:63172729-63172748 | Msa0562910:intron | 30.0% |
| TGATACTAGATCATATGGTT+TGG | + | chr4_1:63172734-63172753 | Msa0562910:intron | 30.0% | |
| ! | AAAACGGTCTTATGATGAAA+AGG | + | chr4_1:63172766-63172785 | Msa0562910:CDS | 30.0% |
| TAAATGTGAAGTAGTAGTGA+GGG | - | chr4_1:63172823-63172842 | None:intergenic | 30.0% | |
| ATAAATGTGAAGTAGTAGTG+AGG | - | chr4_1:63172824-63172843 | None:intergenic | 30.0% | |
| !!! | GTTACTTATTTTTGGTCATG+AGG | + | chr4_1:63172904-63172923 | Msa0562910:intron | 30.0% |
| TCCCTCATATTAAGATGTTA+GGG | - | chr4_1:63172958-63172977 | None:intergenic | 30.0% | |
| AAAATGTCCATAAAGAGATG+TGG | - | chr4_1:63172988-63173007 | None:intergenic | 30.0% | |
| ATTTGTGACTATTGAGTTCA+TGG | - | chr4_1:63173319-63173338 | None:intergenic | 30.0% | |
| TTGCATAGCACAAATCATTA+AGG | - | chr4_1:63173350-63173369 | None:intergenic | 30.0% | |
| ATGCAATCCTTGCAATATTT+AGG | + | chr4_1:63173364-63173383 | Msa0562910:CDS | 30.0% | |
| ! | TGAATTTTTGCCCTCTATTT+GGG | - | chr4_1:63173400-63173419 | None:intergenic | 30.0% |
| ACATGAATGCATACAACATT+AGG | - | chr4_1:63173450-63173469 | None:intergenic | 30.0% | |
| !!! | GAAGTATGATATTTTTCGAG+TGG | + | chr4_1:63173566-63173585 | Msa0562910:CDS | 30.0% |
| !! | CTGCATAGATTTTAGCAACA+AGG | + | chr4_1:63172458-63172477 | Msa0562910:CDS | 35.0% |
| TGGTCAACAATTACTACAGT+TGG | - | chr4_1:63172513-63172532 | None:intergenic | 35.0% | |
| !! | TCTATACTCAAGAGTATCCA+TGG | + | chr4_1:63172594-63172613 | Msa0562910:CDS | 35.0% |
| !! | CAAGAGTATCCATGGAAATA+TGG | + | chr4_1:63172602-63172621 | Msa0562910:CDS | 35.0% |
| AAATGTGAAGTAGTAGTGAG+GGG | - | chr4_1:63172822-63172841 | None:intergenic | 35.0% | |
| AGCCCTAACATCTTAATATG+AGG | + | chr4_1:63172953-63172972 | Msa0562910:intron | 35.0% | |
| GCCCTAACATCTTAATATGA+GGG | + | chr4_1:63172954-63172973 | Msa0562910:intron | 35.0% | |
| GTCCCTCATATTAAGATGTT+AGG | - | chr4_1:63172959-63172978 | None:intergenic | 35.0% | |
| CTTTGATCCACATCTCTTTA+TGG | + | chr4_1:63172978-63172997 | Msa0562910:intron | 35.0% | |
| GTTGGCATGACTTAATACAT+GGG | - | chr4_1:63173011-63173030 | None:intergenic | 35.0% | |
| GGAAAGTAGAAATGCAAAAC+AGG | - | chr4_1:63173099-63173118 | None:intergenic | 35.0% | |
| GCTAATGCATGTAACAAGAA+TGG | + | chr4_1:63173200-63173219 | Msa0562910:CDS | 35.0% | |
| TATTTCCTCAATGCATATGC+TGG | + | chr4_1:63173240-63173259 | Msa0562910:CDS | 35.0% | |
| AACGTGACCTAAATATTGCA+AGG | - | chr4_1:63173374-63173393 | None:intergenic | 35.0% | |
| ! | TCACGTTTTTCCCAAATAGA+GGG | + | chr4_1:63173387-63173406 | Msa0562910:CDS | 35.0% |
| ! | CTGAATTTTTGCCCTCTATT+TGG | - | chr4_1:63173401-63173420 | None:intergenic | 35.0% |
| CAAATAGAGGGCAAAAATTC+AGG | + | chr4_1:63173399-63173418 | Msa0562910:CDS | 35.0% | |
| AAATTCAGGCCTTTGCTTAA+AGG | + | chr4_1:63173413-63173432 | Msa0562910:CDS | 35.0% | |
| AATTCAGGCCTTTGCTTAAA+GGG | + | chr4_1:63173414-63173433 | Msa0562910:CDS | 35.0% | |
| ! | ACTTTTGACCCTTTAAGCAA+AGG | - | chr4_1:63173425-63173444 | None:intergenic | 35.0% |
| ATGTTGTATGCATTCATGTG+TGG | + | chr4_1:63173451-63173470 | Msa0562910:CDS | 35.0% | |
| !!! | CACTACAGTTTTGTTACTCA+TGG | + | chr4_1:63173478-63173497 | Msa0562910:CDS | 35.0% |
| GGATGATTCCTTATCTTGAA+CGG | + | chr4_1:63173526-63173545 | Msa0562910:CDS | 35.0% | |
| ! | TTTCGAGTGGTATATGTTAG+TGG | + | chr4_1:63173579-63173598 | Msa0562910:CDS | 35.0% |
| AATGAAGAAGAGAGTAGACA+TGG | + | chr4_1:63173633-63173652 | Msa0562910:CDS | 35.0% | |
| !! | CTGCATAGATTTTAGCAACA+AGG | + | chr4_1:63172458-63172477 | Msa0562910:CDS | 35.0% |
| TGGTCAACAATTACTACAGT+TGG | - | chr4_1:63172513-63172532 | None:intergenic | 35.0% | |
| !! | TCTATACTCAAGAGTATCCA+TGG | + | chr4_1:63172594-63172613 | Msa0562910:CDS | 35.0% |
| !! | CAAGAGTATCCATGGAAATA+TGG | + | chr4_1:63172602-63172621 | Msa0562910:CDS | 35.0% |
| AAATGTGAAGTAGTAGTGAG+GGG | - | chr4_1:63172822-63172841 | None:intergenic | 35.0% | |
| AGCCCTAACATCTTAATATG+AGG | + | chr4_1:63172953-63172972 | Msa0562910:intron | 35.0% | |
| GCCCTAACATCTTAATATGA+GGG | + | chr4_1:63172954-63172973 | Msa0562910:intron | 35.0% | |
| GTCCCTCATATTAAGATGTT+AGG | - | chr4_1:63172959-63172978 | None:intergenic | 35.0% | |
| CTTTGATCCACATCTCTTTA+TGG | + | chr4_1:63172978-63172997 | Msa0562910:intron | 35.0% | |
| GTTGGCATGACTTAATACAT+GGG | - | chr4_1:63173011-63173030 | None:intergenic | 35.0% | |
| GGAAAGTAGAAATGCAAAAC+AGG | - | chr4_1:63173099-63173118 | None:intergenic | 35.0% | |
| GCTAATGCATGTAACAAGAA+TGG | + | chr4_1:63173200-63173219 | Msa0562910:CDS | 35.0% | |
| TATTTCCTCAATGCATATGC+TGG | + | chr4_1:63173240-63173259 | Msa0562910:CDS | 35.0% | |
| AACGTGACCTAAATATTGCA+AGG | - | chr4_1:63173374-63173393 | None:intergenic | 35.0% | |
| ! | TCACGTTTTTCCCAAATAGA+GGG | + | chr4_1:63173387-63173406 | Msa0562910:CDS | 35.0% |
| ! | CTGAATTTTTGCCCTCTATT+TGG | - | chr4_1:63173401-63173420 | None:intergenic | 35.0% |
| CAAATAGAGGGCAAAAATTC+AGG | + | chr4_1:63173399-63173418 | Msa0562910:CDS | 35.0% | |
| AAATTCAGGCCTTTGCTTAA+AGG | + | chr4_1:63173413-63173432 | Msa0562910:CDS | 35.0% | |
| AATTCAGGCCTTTGCTTAAA+GGG | + | chr4_1:63173414-63173433 | Msa0562910:CDS | 35.0% | |
| ! | ACTTTTGACCCTTTAAGCAA+AGG | - | chr4_1:63173425-63173444 | None:intergenic | 35.0% |
| ATGTTGTATGCATTCATGTG+TGG | + | chr4_1:63173451-63173470 | Msa0562910:CDS | 35.0% | |
| !!! | CACTACAGTTTTGTTACTCA+TGG | + | chr4_1:63173478-63173497 | Msa0562910:CDS | 35.0% |
| GGATGATTCCTTATCTTGAA+CGG | + | chr4_1:63173526-63173545 | Msa0562910:CDS | 35.0% | |
| ! | TTTCGAGTGGTATATGTTAG+TGG | + | chr4_1:63173579-63173598 | Msa0562910:CDS | 35.0% |
| AATGAAGAAGAGAGTAGACA+TGG | + | chr4_1:63173633-63173652 | Msa0562910:CDS | 35.0% | |
| ! | AGATCATATGGTTTGGAGCA+TGG | + | chr4_1:63172741-63172760 | Msa0562910:intron | 40.0% |
| AGATGTTAGGGCTATATCGA+CGG | - | chr4_1:63172946-63172965 | None:intergenic | 40.0% | |
| CGTTGGCATGACTTAATACA+TGG | - | chr4_1:63173012-63173031 | None:intergenic | 40.0% | |
| !! | AGCATTGATAGCTGTAAGAG+AGG | - | chr4_1:63173183-63173202 | None:intergenic | 40.0% |
| TGTAACAAGAATGGCTGTCT+TGG | + | chr4_1:63173209-63173228 | Msa0562910:CDS | 40.0% | |
| ATTCTCCAGCATATGCATTG+AGG | - | chr4_1:63173248-63173267 | None:intergenic | 40.0% | |
| TATGCTGGAGAATCAAGAGA+TGG | + | chr4_1:63173255-63173274 | Msa0562910:CDS | 40.0% | |
| ! | GTCACGTTTTTCCCAAATAG+AGG | + | chr4_1:63173386-63173405 | Msa0562910:CDS | 40.0% |
| ATGGAGAACCGTTCAAGATA+AGG | - | chr4_1:63173537-63173556 | None:intergenic | 40.0% | |
| ! | AGATCATATGGTTTGGAGCA+TGG | + | chr4_1:63172741-63172760 | Msa0562910:intron | 40.0% |
| AGATGTTAGGGCTATATCGA+CGG | - | chr4_1:63172946-63172965 | None:intergenic | 40.0% | |
| CGTTGGCATGACTTAATACA+TGG | - | chr4_1:63173012-63173031 | None:intergenic | 40.0% | |
| !! | AGCATTGATAGCTGTAAGAG+AGG | - | chr4_1:63173183-63173202 | None:intergenic | 40.0% |
| TGTAACAAGAATGGCTGTCT+TGG | + | chr4_1:63173209-63173228 | Msa0562910:CDS | 40.0% | |
| ATTCTCCAGCATATGCATTG+AGG | - | chr4_1:63173248-63173267 | None:intergenic | 40.0% | |
| TATGCTGGAGAATCAAGAGA+TGG | + | chr4_1:63173255-63173274 | Msa0562910:CDS | 40.0% | |
| ! | GTCACGTTTTTCCCAAATAG+AGG | + | chr4_1:63173386-63173405 | Msa0562910:CDS | 40.0% |
| ATGGAGAACCGTTCAAGATA+AGG | - | chr4_1:63173537-63173556 | None:intergenic | 40.0% | |
| ! | GGTTTGGAGCATGGCAAAAA+CGG | + | chr4_1:63172750-63172769 | Msa0562910:CDS | 45.0% |
| AGTGAGGGGTCATACTTACA+AGG | - | chr4_1:63172808-63172827 | None:intergenic | 45.0% | |
| GTGCTTCTACAACTGTGATG+AGG | + | chr4_1:63172878-63172897 | Msa0562910:intron | 45.0% | |
| ! | GGTTTGGAGCATGGCAAAAA+CGG | + | chr4_1:63172750-63172769 | Msa0562910:CDS | 45.0% |
| AGTGAGGGGTCATACTTACA+AGG | - | chr4_1:63172808-63172827 | None:intergenic | 45.0% | |
| GTGCTTCTACAACTGTGATG+AGG | + | chr4_1:63172878-63172897 | Msa0562910:intron | 45.0% | |
| TCCTCACGTGCTGAGAATCT+TGG | + | chr4_1:63172558-63172577 | Msa0562910:CDS | 50.0% | |
| ACCAAGATTCTCAGCACGTG+AGG | - | chr4_1:63172562-63172581 | None:intergenic | 50.0% | |
| TCCTCACGTGCTGAGAATCT+TGG | + | chr4_1:63172558-63172577 | Msa0562910:CDS | 50.0% | |
| ACCAAGATTCTCAGCACGTG+AGG | - | chr4_1:63172562-63172581 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 63172447 | 63173674 | 63172447 | ID=Msa0562910;Name=Msa0562910 |
| chr4_1 | mRNA | 63172447 | 63173674 | 63172447 | ID=Msa0562910-mRNA-1;Parent=Msa0562910;Name=Msa0562910-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|3|0|241 |
| chr4_1 | exon | 63172447 | 63172623 | 63172447 | ID=Msa0562910-mRNA-1:exon:19984;Parent=Msa0562910-mRNA-1 |
| chr4_1 | exon | 63172743 | 63172808 | 63172743 | ID=Msa0562910-mRNA-1:exon:19985;Parent=Msa0562910-mRNA-1 |
| chr4_1 | exon | 63173192 | 63173674 | 63173192 | ID=Msa0562910-mRNA-1:exon:19986;Parent=Msa0562910-mRNA-1 |
| chr4_1 | CDS | 63172447 | 63172623 | 63172447 | ID=Msa0562910-mRNA-1:cds;Parent=Msa0562910-mRNA-1 |
| chr4_1 | CDS | 63172743 | 63172808 | 63172743 | ID=Msa0562910-mRNA-1:cds;Parent=Msa0562910-mRNA-1 |
| chr4_1 | CDS | 63173192 | 63173674 | 63173192 | ID=Msa0562910-mRNA-1:cds;Parent=Msa0562910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
