Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699970 | XP_024627676.1 | 95.968 | 248 | 9 | 1 | 1 | 247 | 1 | 248 | 9.19e-176 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699970 | A0A072U3V5 | 95.968 | 248 | 9 | 1 | 1 | 247 | 1 | 248 | 4.39e-176 | 493 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090380 | Msa0699970 | 0.803839 | 2.877816e-49 | -8.615850e-47 |
| Msa0617160 | Msa0699970 | 0.906802 | 1.005218e-80 | -8.615850e-47 |
| Msa0656170 | Msa0699970 | 0.898262 | 6.301284e-77 | -8.615850e-47 |
| Msa0699970 | Msa1159170 | 0.803011 | 4.272580e-49 | -8.615850e-47 |
| Msa0699970 | Msa1225580 | 0.807257 | 5.521261e-50 | -8.615850e-47 |
| Msa0699970 | Msa1355510 | 0.801195 | 1.009585e-48 | -8.615850e-47 |
| Msa0699970 | Msa1433410 | 0.802750 | 4.836930e-49 | -8.615850e-47 |
| Msa0264680 | Msa0699970 | 0.802088 | 6.623148e-49 | -8.615850e-47 |
| Msa0302730 | Msa0699970 | 0.804996 | 1.651700e-49 | -8.615850e-47 |
| Msa0562910 | Msa0699970 | 0.881265 | 2.772029e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699970 | MtrunA17_Chr8g0376721 | 95.968 | 248 | 9 | 1 | 1 | 247 | 1 | 248 | 8.45e-180 | 493 |
| Msa0699970 | MtrunA17_Chr2g0285421 | 65.182 | 247 | 84 | 2 | 2 | 247 | 1 | 246 | 1.91e-117 | 335 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATCCAGATTATAGAAAT+TGG | 0.211714 | 4_4:+70776659 | Msa0699970:CDS |
| ATCATACTTCATCATGTTAA+TGG | 0.223361 | 4_4:-70776707 | None:intergenic |
| ATGCAATCCTTGCAATATTT+AGG | 0.247387 | 4_4:+70776518 | Msa0699970:CDS |
| ATCATCCAATTTCTATAATC+TGG | 0.269076 | 4_4:-70776664 | None:intergenic |
| ATATAACATTAGGTAACTTT+TGG | 0.323032 | 4_4:-70776591 | None:intergenic |
| CAAGAGTATCCATGGAAATA+TGG | 0.330050 | 4_4:+70775575 | Msa0699970:CDS |
| TTGCATAGCACAAATCATTA+AGG | 0.358283 | 4_4:-70776501 | None:intergenic |
| ATTTGTGACTATTGAGTTCA+TGG | 0.370041 | 4_4:-70776470 | None:intergenic |
| TGTACTGATACTAGATCATA+TGG | 0.393061 | 4_4:+70775702 | Msa0699970:intron |
| TCCTCACGTGCTGAGAATCT+TGG | 0.396867 | 4_4:+70775531 | Msa0699970:CDS |
| TTTCGAGTGGTATATGTTAG+TGG | 0.405631 | 4_4:+70776733 | Msa0699970:CDS |
| AATTCAGGACTTTGCTTGAA+AGG | 0.417371 | 4_4:+70776568 | Msa0699970:CDS |
| ACATGAATGCATATAACATT+AGG | 0.425221 | 4_4:-70776601 | None:intergenic |
| TGATTATAATGTTCAGATGT+TGG | 0.449350 | 4_4:+70776780 | Msa0699970:CDS |
| GTTTGATTTCATGAATAAGA+TGG | 0.454595 | 4_4:-70775503 | None:intergenic |
| TGATACTAGATCATATGGTT+TGG | 0.460097 | 4_4:+70775707 | Msa0699970:intron |
| AAAACGGTCTTATGATGAAA+AGG | 0.477023 | 4_4:+70775739 | Msa0699970:CDS |
| ATGGAGAACCGTTCAAGATA+AGG | 0.494548 | 4_4:-70776688 | None:intergenic |
| TATTTCCTCAATGCATATGC+TGG | 0.506807 | 4_4:+70776394 | Msa0699970:CDS |
| GGATGATTCCTTATCTTGAA+CGG | 0.529425 | 4_4:+70776680 | Msa0699970:CDS |
| GCTAATGCATGTAACAAGAA+TGG | 0.535827 | 4_4:+70776354 | Msa0699970:CDS |
| AGATCATATGGTTTGGAGCA+TGG | 0.539450 | 4_4:+70775714 | Msa0699970:intron |
| ATTCTCCAGCATATGCATTG+AGG | 0.539548 | 4_4:-70776399 | None:intergenic |
| TGGTCAACAATTACTACAGT+TGG | 0.545716 | 4_4:-70775483 | None:intergenic |
| TGTAACAAGAATGGCTGTCT+TGG | 0.548408 | 4_4:+70776363 | Msa0699970:CDS |
| TCTATACTCAAGAGTATCCA+TGG | 0.558936 | 4_4:+70775567 | Msa0699970:CDS |
| ATATATATACCATATTTCCA+TGG | 0.601472 | 4_4:-70775584 | None:intergenic |
| AACGTGACCTAAATATTGCA+AGG | 0.604286 | 4_4:-70776525 | None:intergenic |
| AATGAAGAAGAGAGTAGACA+TGG | 0.612945 | 4_4:+70776805 | Msa0699970:CDS |
| ATCTGAACATTATAATCACA+AGG | 0.647029 | 4_4:-70776775 | None:intergenic |
| ATGTTATATGCATTCATGTG+TGG | 0.651979 | 4_4:+70776605 | Msa0699970:CDS |
| ACCAAGATTCTCAGCACGTG+AGG | 0.657985 | 4_4:-70775532 | None:intergenic |
| TATGCTGGAGAATCAAGAGA+TGG | 0.661834 | 4_4:+70776409 | Msa0699970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAGATTATATATACTTTA+TGG | - | chr4_4:70776003-70776022 | None:intergenic | 15.0% |
| !! | GATAGATTATATATACTTTA+TGG | - | chr4_4:70776003-70776022 | None:intergenic | 15.0% |
| !! | ATATATATACCATATTTCCA+TGG | - | chr4_4:70775587-70775606 | None:intergenic | 20.0% |
| !!! | GTTTAAGTTTTCTTGTATTT+TGG | + | chr4_4:70775659-70775678 | Msa0699970:intron | 20.0% |
| !! | GAAAGAATATTAAATTTCCT+TGG | - | chr4_4:70776142-70776161 | None:intergenic | 20.0% |
| !! | TTTAGATATTCTGTCATATT+AGG | - | chr4_4:70776227-70776246 | None:intergenic | 20.0% |
| !!! | TCAACTATAAATTTTAGTAC+AGG | + | chr4_4:70776436-70776455 | Msa0699970:CDS | 20.0% |
| !!! | ATATAACATTAGGTAACTTT+TGG | - | chr4_4:70776594-70776613 | None:intergenic | 20.0% |
| !! | TAAATCCAGATTATAGAAAT+TGG | + | chr4_4:70776659-70776678 | Msa0699970:CDS | 20.0% |
| !! | ATATATATACCATATTTCCA+TGG | - | chr4_4:70775587-70775606 | None:intergenic | 20.0% |
| !!! | GTTTAAGTTTTCTTGTATTT+TGG | + | chr4_4:70775659-70775678 | Msa0699970:intron | 20.0% |
| !! | GAAAGAATATTAAATTTCCT+TGG | - | chr4_4:70776142-70776161 | None:intergenic | 20.0% |
| !! | TTTAGATATTCTGTCATATT+AGG | - | chr4_4:70776227-70776246 | None:intergenic | 20.0% |
| !!! | TCAACTATAAATTTTAGTAC+AGG | + | chr4_4:70776436-70776455 | Msa0699970:CDS | 20.0% |
| !!! | ATATAACATTAGGTAACTTT+TGG | - | chr4_4:70776594-70776613 | None:intergenic | 20.0% |
| !! | TAAATCCAGATTATAGAAAT+TGG | + | chr4_4:70776659-70776678 | Msa0699970:CDS | 20.0% |
| !! | GTTTGATTTCATGAATAAGA+TGG | - | chr4_4:70775506-70775525 | None:intergenic | 25.0% |
| ! | AAAACTAGAGAAATGAAAGA+TGG | - | chr4_4:70775612-70775631 | None:intergenic | 25.0% |
| ! | TAAACAGTATACTTAGAAGT+TGG | - | chr4_4:70775644-70775663 | None:intergenic | 25.0% |
| ! | GTACATAAAAAGTCTACTTT+AGG | - | chr4_4:70775841-70775860 | None:intergenic | 25.0% |
| !!! | TGAGGAATGTTACTTATTTT+TGG | + | chr4_4:70775875-70775894 | Msa0699970:intron | 25.0% |
| !!! | TTACTTATTTTTGGTCATGA+GGG | + | chr4_4:70775884-70775903 | Msa0699970:intron | 25.0% |
| ! | ACATGAATGCATATAACATT+AGG | - | chr4_4:70776604-70776623 | None:intergenic | 25.0% |
| ! | ATCATCCAATTTCTATAATC+TGG | - | chr4_4:70776667-70776686 | None:intergenic | 25.0% |
| ! | ATCATACTTCATCATGTTAA+TGG | - | chr4_4:70776710-70776729 | None:intergenic | 25.0% |
| ! | ATCTGAACATTATAATCACA+AGG | - | chr4_4:70776778-70776797 | None:intergenic | 25.0% |
| ! | TGATTATAATGTTCAGATGT+TGG | + | chr4_4:70776780-70776799 | Msa0699970:CDS | 25.0% |
| !! | GTTTGATTTCATGAATAAGA+TGG | - | chr4_4:70775506-70775525 | None:intergenic | 25.0% |
| ! | AAAACTAGAGAAATGAAAGA+TGG | - | chr4_4:70775612-70775631 | None:intergenic | 25.0% |
| ! | TAAACAGTATACTTAGAAGT+TGG | - | chr4_4:70775644-70775663 | None:intergenic | 25.0% |
| ! | GTACATAAAAAGTCTACTTT+AGG | - | chr4_4:70775841-70775860 | None:intergenic | 25.0% |
| !!! | TGAGGAATGTTACTTATTTT+TGG | + | chr4_4:70775875-70775894 | Msa0699970:intron | 25.0% |
| !!! | TTACTTATTTTTGGTCATGA+GGG | + | chr4_4:70775884-70775903 | Msa0699970:intron | 25.0% |
| ! | ACATGAATGCATATAACATT+AGG | - | chr4_4:70776604-70776623 | None:intergenic | 25.0% |
| ! | ATCATCCAATTTCTATAATC+TGG | - | chr4_4:70776667-70776686 | None:intergenic | 25.0% |
| ! | ATCATACTTCATCATGTTAA+TGG | - | chr4_4:70776710-70776729 | None:intergenic | 25.0% |
| ! | ATCTGAACATTATAATCACA+AGG | - | chr4_4:70776778-70776797 | None:intergenic | 25.0% |
| ! | TGATTATAATGTTCAGATGT+TGG | + | chr4_4:70776780-70776799 | Msa0699970:CDS | 25.0% |
| !! | AGATTTTAGCAACAAGGATT+TGG | + | chr4_4:70775437-70775456 | Msa0699970:CDS | 30.0% |
| ! | TGTACTGATACTAGATCATA+TGG | + | chr4_4:70775702-70775721 | Msa0699970:intron | 30.0% |
| TGATACTAGATCATATGGTT+TGG | + | chr4_4:70775707-70775726 | Msa0699970:intron | 30.0% | |
| ! | AAAACGGTCTTATGATGAAA+AGG | + | chr4_4:70775739-70775758 | Msa0699970:CDS | 30.0% |
| ATAAATGTGAAGTAGTAGTG+AGG | - | chr4_4:70775797-70775816 | None:intergenic | 30.0% | |
| !! | TACTTTAGGACTAAACAAGA+AGG | - | chr4_4:70775827-70775846 | None:intergenic | 30.0% |
| ATAAGTAACATTCCTCATCA+CGG | - | chr4_4:70775872-70775891 | None:intergenic | 30.0% | |
| !!! | GTTACTTATTTTTGGTCATG+AGG | + | chr4_4:70775883-70775902 | Msa0699970:intron | 30.0% |
| ATAGCCCTTAACATCTTAAT+AGG | + | chr4_4:70776063-70776082 | Msa0699970:intron | 30.0% | |
| AAAATGTCCATAAAGAGATG+TGG | - | chr4_4:70776101-70776120 | None:intergenic | 30.0% | |
| ! | TCTAAAACTGACACATTAAC+TGG | + | chr4_4:70776241-70776260 | Msa0699970:intron | 30.0% |
| ATTTGTGACTATTGAGTTCA+TGG | - | chr4_4:70776473-70776492 | None:intergenic | 30.0% | |
| TTGCATAGCACAAATCATTA+AGG | - | chr4_4:70776504-70776523 | None:intergenic | 30.0% | |
| ATGCAATCCTTGCAATATTT+AGG | + | chr4_4:70776518-70776537 | Msa0699970:CDS | 30.0% | |
| ! | TCACGTTTTTCACAAATAGA+AGG | + | chr4_4:70776541-70776560 | Msa0699970:CDS | 30.0% |
| CAAATAGAAGGCAAAAATTC+AGG | + | chr4_4:70776553-70776572 | Msa0699970:CDS | 30.0% | |
| ATGTTATATGCATTCATGTG+TGG | + | chr4_4:70776605-70776624 | Msa0699970:CDS | 30.0% | |
| !!! | GAAGTATGATATTTTTCGAG+TGG | + | chr4_4:70776720-70776739 | Msa0699970:CDS | 30.0% |
| !! | AGATTTTAGCAACAAGGATT+TGG | + | chr4_4:70775437-70775456 | Msa0699970:CDS | 30.0% |
| ! | TGTACTGATACTAGATCATA+TGG | + | chr4_4:70775702-70775721 | Msa0699970:intron | 30.0% |
| TGATACTAGATCATATGGTT+TGG | + | chr4_4:70775707-70775726 | Msa0699970:intron | 30.0% | |
| ! | AAAACGGTCTTATGATGAAA+AGG | + | chr4_4:70775739-70775758 | Msa0699970:CDS | 30.0% |
| ATAAATGTGAAGTAGTAGTG+AGG | - | chr4_4:70775797-70775816 | None:intergenic | 30.0% | |
| !! | TACTTTAGGACTAAACAAGA+AGG | - | chr4_4:70775827-70775846 | None:intergenic | 30.0% |
| ATAAGTAACATTCCTCATCA+CGG | - | chr4_4:70775872-70775891 | None:intergenic | 30.0% | |
| !!! | GTTACTTATTTTTGGTCATG+AGG | + | chr4_4:70775883-70775902 | Msa0699970:intron | 30.0% |
| ATAGCCCTTAACATCTTAAT+AGG | + | chr4_4:70776063-70776082 | Msa0699970:intron | 30.0% | |
| AAAATGTCCATAAAGAGATG+TGG | - | chr4_4:70776101-70776120 | None:intergenic | 30.0% | |
| ! | TCTAAAACTGACACATTAAC+TGG | + | chr4_4:70776241-70776260 | Msa0699970:intron | 30.0% |
| ATTTGTGACTATTGAGTTCA+TGG | - | chr4_4:70776473-70776492 | None:intergenic | 30.0% | |
| TTGCATAGCACAAATCATTA+AGG | - | chr4_4:70776504-70776523 | None:intergenic | 30.0% | |
| ATGCAATCCTTGCAATATTT+AGG | + | chr4_4:70776518-70776537 | Msa0699970:CDS | 30.0% | |
| ! | TCACGTTTTTCACAAATAGA+AGG | + | chr4_4:70776541-70776560 | Msa0699970:CDS | 30.0% |
| CAAATAGAAGGCAAAAATTC+AGG | + | chr4_4:70776553-70776572 | Msa0699970:CDS | 30.0% | |
| ATGTTATATGCATTCATGTG+TGG | + | chr4_4:70776605-70776624 | Msa0699970:CDS | 30.0% | |
| !!! | GAAGTATGATATTTTTCGAG+TGG | + | chr4_4:70776720-70776739 | Msa0699970:CDS | 30.0% |
| !! | CTGCATAGATTTTAGCAACA+AGG | + | chr4_4:70775431-70775450 | Msa0699970:CDS | 35.0% |
| TGGTCAACAATTACTACAGT+TGG | - | chr4_4:70775486-70775505 | None:intergenic | 35.0% | |
| !! | TCTATACTCAAGAGTATCCA+TGG | + | chr4_4:70775567-70775586 | Msa0699970:CDS | 35.0% |
| !! | CAAGAGTATCCATGGAAATA+TGG | + | chr4_4:70775575-70775594 | Msa0699970:CDS | 35.0% |
| CTCTCTTCAATTTAGTGTTC+TGG | + | chr4_4:70775953-70775972 | Msa0699970:intron | 35.0% | |
| CCCTCCTATTAAGATGTTAA+GGG | - | chr4_4:70776070-70776089 | None:intergenic | 35.0% | |
| CCCTTAACATCTTAATAGGA+GGG | + | chr4_4:70776067-70776086 | Msa0699970:intron | 35.0% | |
| TCCCTCCTATTAAGATGTTA+AGG | - | chr4_4:70776071-70776090 | None:intergenic | 35.0% | |
| CTTTGATCCACATCTCTTTA+TGG | + | chr4_4:70776091-70776110 | Msa0699970:intron | 35.0% | |
| CTTGGCATGACTTTATACAT+GGG | - | chr4_4:70776124-70776143 | None:intergenic | 35.0% | |
| GGAAAGTAGAAATGCAAAAC+AGG | - | chr4_4:70776206-70776225 | None:intergenic | 35.0% | |
| GCTAATGCATGTAACAAGAA+TGG | + | chr4_4:70776354-70776373 | Msa0699970:CDS | 35.0% | |
| TATTTCCTCAATGCATATGC+TGG | + | chr4_4:70776394-70776413 | Msa0699970:CDS | 35.0% | |
| AACGTGACCTAAATATTGCA+AGG | - | chr4_4:70776528-70776547 | None:intergenic | 35.0% | |
| AATTCAGGACTTTGCTTGAA+AGG | + | chr4_4:70776568-70776587 | Msa0699970:CDS | 35.0% | |
| !!! | CACTACAGTTTTGTTACTCA+TGG | + | chr4_4:70776632-70776651 | Msa0699970:CDS | 35.0% |
| GGATGATTCCTTATCTTGAA+CGG | + | chr4_4:70776680-70776699 | Msa0699970:CDS | 35.0% | |
| ! | TTTCGAGTGGTATATGTTAG+TGG | + | chr4_4:70776733-70776752 | Msa0699970:CDS | 35.0% |
| AATGAAGAAGAGAGTAGACA+TGG | + | chr4_4:70776805-70776824 | Msa0699970:CDS | 35.0% | |
| !! | CTGCATAGATTTTAGCAACA+AGG | + | chr4_4:70775431-70775450 | Msa0699970:CDS | 35.0% |
| TGGTCAACAATTACTACAGT+TGG | - | chr4_4:70775486-70775505 | None:intergenic | 35.0% | |
| !! | TCTATACTCAAGAGTATCCA+TGG | + | chr4_4:70775567-70775586 | Msa0699970:CDS | 35.0% |
| !! | CAAGAGTATCCATGGAAATA+TGG | + | chr4_4:70775575-70775594 | Msa0699970:CDS | 35.0% |
| CTCTCTTCAATTTAGTGTTC+TGG | + | chr4_4:70775953-70775972 | Msa0699970:intron | 35.0% | |
| CCCTCCTATTAAGATGTTAA+GGG | - | chr4_4:70776070-70776089 | None:intergenic | 35.0% | |
| CCCTTAACATCTTAATAGGA+GGG | + | chr4_4:70776067-70776086 | Msa0699970:intron | 35.0% | |
| TCCCTCCTATTAAGATGTTA+AGG | - | chr4_4:70776071-70776090 | None:intergenic | 35.0% | |
| CTTTGATCCACATCTCTTTA+TGG | + | chr4_4:70776091-70776110 | Msa0699970:intron | 35.0% | |
| CTTGGCATGACTTTATACAT+GGG | - | chr4_4:70776124-70776143 | None:intergenic | 35.0% | |
| GGAAAGTAGAAATGCAAAAC+AGG | - | chr4_4:70776206-70776225 | None:intergenic | 35.0% | |
| GCTAATGCATGTAACAAGAA+TGG | + | chr4_4:70776354-70776373 | Msa0699970:CDS | 35.0% | |
| TATTTCCTCAATGCATATGC+TGG | + | chr4_4:70776394-70776413 | Msa0699970:CDS | 35.0% | |
| AACGTGACCTAAATATTGCA+AGG | - | chr4_4:70776528-70776547 | None:intergenic | 35.0% | |
| AATTCAGGACTTTGCTTGAA+AGG | + | chr4_4:70776568-70776587 | Msa0699970:CDS | 35.0% | |
| !!! | CACTACAGTTTTGTTACTCA+TGG | + | chr4_4:70776632-70776651 | Msa0699970:CDS | 35.0% |
| GGATGATTCCTTATCTTGAA+CGG | + | chr4_4:70776680-70776699 | Msa0699970:CDS | 35.0% | |
| ! | TTTCGAGTGGTATATGTTAG+TGG | + | chr4_4:70776733-70776752 | Msa0699970:CDS | 35.0% |
| AATGAAGAAGAGAGTAGACA+TGG | + | chr4_4:70776805-70776824 | Msa0699970:CDS | 35.0% | |
| ! | AGATCATATGGTTTGGAGCA+TGG | + | chr4_4:70775714-70775733 | Msa0699970:intron | 40.0% |
| ! | AGTGAGGTGTCATACTTACA+AGG | - | chr4_4:70775781-70775800 | None:intergenic | 40.0% |
| !!! | CTTATTTTTGGTCATGAGGG+TGG | + | chr4_4:70775887-70775906 | Msa0699970:intron | 40.0% |
| GCCCTTAACATCTTAATAGG+AGG | + | chr4_4:70776066-70776085 | Msa0699970:intron | 40.0% | |
| CCTTGGCATGACTTTATACA+TGG | - | chr4_4:70776125-70776144 | None:intergenic | 40.0% | |
| CCATGTATAAAGTCATGCCA+AGG | + | chr4_4:70776122-70776141 | Msa0699970:intron | 40.0% | |
| !! | TTAGCATTGATAGCTGCAAG+AGG | - | chr4_4:70776339-70776358 | None:intergenic | 40.0% |
| TGTAACAAGAATGGCTGTCT+TGG | + | chr4_4:70776363-70776382 | Msa0699970:CDS | 40.0% | |
| ATTCTCCAGCATATGCATTG+AGG | - | chr4_4:70776402-70776421 | None:intergenic | 40.0% | |
| TATGCTGGAGAATCAAGAGA+TGG | + | chr4_4:70776409-70776428 | Msa0699970:CDS | 40.0% | |
| ATGGAGAACCGTTCAAGATA+AGG | - | chr4_4:70776691-70776710 | None:intergenic | 40.0% | |
| ! | AGATCATATGGTTTGGAGCA+TGG | + | chr4_4:70775714-70775733 | Msa0699970:intron | 40.0% |
| ! | AGTGAGGTGTCATACTTACA+AGG | - | chr4_4:70775781-70775800 | None:intergenic | 40.0% |
| !!! | CTTATTTTTGGTCATGAGGG+TGG | + | chr4_4:70775887-70775906 | Msa0699970:intron | 40.0% |
| GCCCTTAACATCTTAATAGG+AGG | + | chr4_4:70776066-70776085 | Msa0699970:intron | 40.0% | |
| CCTTGGCATGACTTTATACA+TGG | - | chr4_4:70776125-70776144 | None:intergenic | 40.0% | |
| CCATGTATAAAGTCATGCCA+AGG | + | chr4_4:70776122-70776141 | Msa0699970:intron | 40.0% | |
| !! | TTAGCATTGATAGCTGCAAG+AGG | - | chr4_4:70776339-70776358 | None:intergenic | 40.0% |
| TGTAACAAGAATGGCTGTCT+TGG | + | chr4_4:70776363-70776382 | Msa0699970:CDS | 40.0% | |
| ATTCTCCAGCATATGCATTG+AGG | - | chr4_4:70776402-70776421 | None:intergenic | 40.0% | |
| TATGCTGGAGAATCAAGAGA+TGG | + | chr4_4:70776409-70776428 | Msa0699970:CDS | 40.0% | |
| ATGGAGAACCGTTCAAGATA+AGG | - | chr4_4:70776691-70776710 | None:intergenic | 40.0% | |
| ! | GGTTTGGAGCATGGCAAAAA+CGG | + | chr4_4:70775723-70775742 | Msa0699970:CDS | 45.0% |
| GTACTTCTACAACCGTGATG+AGG | + | chr4_4:70775857-70775876 | Msa0699970:intron | 45.0% | |
| ! | GGTTTGGAGCATGGCAAAAA+CGG | + | chr4_4:70775723-70775742 | Msa0699970:CDS | 45.0% |
| GTACTTCTACAACCGTGATG+AGG | + | chr4_4:70775857-70775876 | Msa0699970:intron | 45.0% | |
| TCCTCACGTGCTGAGAATCT+TGG | + | chr4_4:70775531-70775550 | Msa0699970:CDS | 50.0% | |
| ACCAAGATTCTCAGCACGTG+AGG | - | chr4_4:70775535-70775554 | None:intergenic | 50.0% | |
| TCCTCACGTGCTGAGAATCT+TGG | + | chr4_4:70775531-70775550 | Msa0699970:CDS | 50.0% | |
| ACCAAGATTCTCAGCACGTG+AGG | - | chr4_4:70775535-70775554 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 70775420 | 70776846 | 70775420 | ID=Msa0699970;Name=Msa0699970 |
| chr4_4 | mRNA | 70775420 | 70776846 | 70775420 | ID=Msa0699970-mRNA-1;Parent=Msa0699970;Name=Msa0699970-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|247 |
| chr4_4 | exon | 70775420 | 70775596 | 70775420 | ID=Msa0699970-mRNA-1:exon:21419;Parent=Msa0699970-mRNA-1 |
| chr4_4 | exon | 70775716 | 70775781 | 70775716 | ID=Msa0699970-mRNA-1:exon:21420;Parent=Msa0699970-mRNA-1 |
| chr4_4 | exon | 70776346 | 70776846 | 70776346 | ID=Msa0699970-mRNA-1:exon:21421;Parent=Msa0699970-mRNA-1 |
| chr4_4 | CDS | 70775420 | 70775596 | 70775420 | ID=Msa0699970-mRNA-1:cds;Parent=Msa0699970-mRNA-1 |
| chr4_4 | CDS | 70775716 | 70775781 | 70775716 | ID=Msa0699970-mRNA-1:cds;Parent=Msa0699970-mRNA-1 |
| chr4_4 | CDS | 70776346 | 70776846 | 70776346 | ID=Msa0699970-mRNA-1:cds;Parent=Msa0699970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
